Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PLXND1	0	genome.wustl.edu	37	3	129290655	129290655	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	3	129290655	129290655	G	A	SNP	PLXND1	ENST00000324093	human	ensembl	74_37	-1	known	missense	c.3110	p.P1037L	0.991	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXND1	HGNC	ENSG00000004399	tier1	-	-	58	0	0.00	39	8	17.02
CCDC88A	0	genome.wustl.edu	37	2	55561568	55561570	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	2	55561568	55561570	GCA	-	DEL	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	in_frame_del	c.2389_2387	p.LQKNL796in_frame_del*	1.000:1.000:1.000	superfamily_Prefoldin	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	tier1			64	0	0.00	18	2	10.00
CSRNP1	0	genome.wustl.edu	37	3	39185356	39185356	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	3	39185356	39185356	T	-	DEL	CSRNP1	ENST00000273153	human	ensembl	74_37	-1	known	frame_shift_del	c.960	p.S322fs	0.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP1	HGNC	ENSG00000144655	tier1			52	0	0.00	17	2	10.53
CACNA1F	0	genome.wustl.edu	37	X	49063082	49063082	+	Silent	SNP	G	G	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	X	49063082	49063082	G	T	SNP	CACNA1F	ENST00000376265	human	ensembl	74_37	-1	known	silent	c.5395	p.R1799	0.054	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	tier1	-	-	81	0	0.00	33	4	10.81
COL1A1	0	genome.wustl.edu	37	17	48274395	48274395	+	Silent	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	17	48274395	48274395	G	A	SNP	COL1A1	ENST00000225964	human	ensembl	74_37	-1	known	silent	c.780	p.G260	0.992	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821	tier1	-	-	113	0	0.00	59	6	9.23
ENSG00000248840	0	genome.wustl.edu	37	4	3314559	3314559	+	RNA	SNP	A	A	G			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	4	3314559	3314559	A	G	SNP	ENSG00000248840	ENST00000600073	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-357G3.2	Clone_based_vega_gene	ENSG00000248840	tier1	-	-	29	0	0.00	23	3	11.54
COL4A2	0	genome.wustl.edu	37	13	111114646	111114646	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	13	111114646	111114646	T	C	SNP	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	missense	c.1691	p.V564A	0.733	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	tier1	-	-	115	0	0.00	54	6	10.00
KHNYN	0	genome.wustl.edu	37	14	24900739	24900739	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	14	24900739	24900739	T	A	SNP	KHNYN	ENST00000251343	human	ensembl	74_37	+1	known	missense	c.272	p.I91N	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	KHNYN	HGNC	ENSG00000100441	tier1	-	-	60	0	0.00	20	11	35.48
NPIPB15	0	genome.wustl.edu	37	16	74425621	74425622	+	In_Frame_Ins	INS	-	-	CCTCTTCCACCCTCT			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	16	74425621	74425622	-	CCTCTTCCACCCTCT	INS	NPIPB15	ENST00000429990	human	ensembl	74_37	+1	known	in_frame_ins	c.975_976	p.329in_frame_insSPLPP	0.002:0.007	NULL	NULL	-	no_errors	NPIPB15	HGNC	ENSG00000196436	tier1			NA	NA	NA	NA	NA	NA
AFAP1L2	0	genome.wustl.edu	37	10	116055237	116055251	+	RNA	DEL	GATGGTTTTACAGAT	GATGGTTTTACAGAT	-			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	GATGGTTTTACAGAT	GATGGTTTTACAGAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	10	116055237	116055251	GATGGTTTTACAGAT	-	DEL	AFAP1L2	ENST00000491814	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.001:0.073:0.083:0.092:0.099:0.105:0.115:0.112:0.108:0.103	-	-	-	no_errors	AFAP1L2	HGNC	ENSG00000169129	tier1			NA	NA	NA	NA	NA	NA
SYNPO2L	0	genome.wustl.edu	37	10	75407274	75407274	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	10	75407274	75407274	C	A	SNP	SYNPO2L	ENST00000394810	human	ensembl	74_37	-1	known	missense	c.2136	p.K712N	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317	tier1	-	-	15	0	0.00	19	6	24.00
APBA1	0	genome.wustl.edu	37	9	72131055	72131055	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	9	72131055	72131055	C	G	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	missense	c.1072	p.E358Q	1.000	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	tier1	-	-	68	0	0.00	27	19	41.30
PIGS	0	genome.wustl.edu	37	17	26883895	26883895	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	17	26883895	26883895	C	T	SNP	PIGS	ENST00000308360	human	ensembl	74_37	-1	known	missense	c.1030	p.A344T	0.292	pfam_PtdIno-glycan_biosynth_class_S	pfam_PtdIno-glycan_biosynth_class_S	-	no_errors	PIGS	HGNC	ENSG00000087111	tier1	-	-	51	0	0.00	35	6	14.63
KRBOX1	0	genome.wustl.edu	37	3	42984102	42984102	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	3	42984102	42984102	G	A	SNP	KRBOX1	ENST00000426937	human	ensembl	74_37	+1	putative	missense	c.350	p.R117Q	0.000	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	KRBOX1	HGNC	ENSG00000240747	tier1	-	-	181	0	0.00	64	6	8.57
TRAPPC9	0	genome.wustl.edu	37	8	141461086	141461086	+	Silent	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	8	141461086	141461086	G	A	SNP	TRAPPC9	ENST00000389328	human	ensembl	74_37	-1	known	silent	c.681	p.R227	0.837	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	tier1	-	-	54	0	0.00	51	8	13.56
ZSCAN12	0	genome.wustl.edu	37	6	28358731	28358731	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	6	28358731	28358731	C	G	SNP	ZSCAN12	ENST00000361028	human	ensembl	74_37	-1	known	missense	c.1336	p.E446Q	0.900	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN12	HGNC	ENSG00000158691	tier1	-	-	34	0	0.00	20	5	20.00
KIAA0513	0	genome.wustl.edu	37	16	85114948	85114948	+	Silent	SNP	C	C	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	16	85114948	85114948	C	A	SNP	KIAA0513	ENST00000258180	human	ensembl	74_37	+1	known	silent	c.930	p.A310	0.963	pfam_SBF2	pfam_SBF2	-	no_errors	KIAA0513	HGNC	ENSG00000135709	tier1	-	-	57	0	0.00	40	4	9.09
LOC283299	0	genome.wustl.edu	37	11	7904519	7904519	+	RNA	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	11	7904519	7904519	C	T	SNP	LOC283299	ENST00000529488	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP11-494M8.4	Clone_based_vega_gene	ENSG00000254951	tier1	-	-	34	0	0.00	16	3	15.79
DSG2	0	genome.wustl.edu	37	18	29126561	29126561	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	18	29126561	29126561	C	A	SNP	DSG2	ENST00000261590	human	ensembl	74_37	+1	known	missense	c.3212	p.A1071D	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG2	HGNC	ENSG00000046604	tier1	-	-	68	0	0.00	36	4	10.00
RTKN	0	genome.wustl.edu	37	2	74654698	74654698	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	2	74654698	74654698	C	A	SNP	RTKN	ENST00000272430	human	ensembl	74_37	-1	known	nonsense	c.1108	p.E370*	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN	HGNC	ENSG00000114993	tier1	-	-	56	0	0.00	33	4	10.81
VWA5A	0	genome.wustl.edu	37	11	123989074	123989074	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	11	123989074	123989074	G	T	SNP	VWA5A	ENST00000392748	human	ensembl	74_37	+1	known	missense	c.425	p.R142L	1.000	NULL	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA5A	HGNC	ENSG00000110002	tier1	-	-	48	0	0.00	15	3	16.67
SFXN5	0	genome.wustl.edu	37	2	73171852	73171852	+	RNA	SNP	G	G	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	2	73171852	73171852	G	T	SNP	SFXN5	ENST00000461352	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.627	-	-	-	no_errors	SFXN5	HGNC	ENSG00000144040	tier1	-	-	72	0	0.00	48	5	9.43
ENSG00000258230	0	genome.wustl.edu	37	12	102167086	102167096	+	RNA	DEL	CATGCTCTCCA	CATGCTCTCCA	-			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	CATGCTCTCCA	CATGCTCTCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	12	102167086	102167096	CATGCTCTCCA	-	DEL	ENSG00000258230	ENST00000600133	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.356:0.345:0.330:0.331:0.328:0.320:0.307:0.287:0.261:0.225:0.174	-	-	-	no_errors	RP11-511H9.3	Clone_based_vega_gene	ENSG00000258230	tier1			NA	NA	NA	NA	NA	NA
DMD	0	genome.wustl.edu	37	X	32328228	32328228	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	X	32328228	32328228	C	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.6088	p.D2030Y	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	tier1	-	-	94	0	0.00	23	11	32.35
TSPYL6	0	genome.wustl.edu	37	2	54482087	54482087	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	2	54482087	54482087	A	G	SNP	TSPYL6	ENST00000317802	human	ensembl	74_37	-1	known	missense	c.1202	p.I401T	0.613	NULL	pfam_NAP_family	-	no_errors	TSPYL6	HGNC	ENSG00000178021	tier1	-	-	90	0	0.00	38	22	36.67
FBN1	0	genome.wustl.edu	37	15	48707925	48707925	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	15	48707925	48707925	G	T	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.7859	p.A2620D	1.000	pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	tier1	-	-	61	0	0.00	35	4	10.26
AMOT	0	genome.wustl.edu	37	X	112022705	112022705	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	X	112022705	112022705	C	T	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	missense	c.2677	p.A893T	0.660	NULL	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	tier1	-	-	23	0	0.00	13	3	18.75
SLC5A2	0	genome.wustl.edu	37	16	31501432	31501432	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	16	31501432	31501432	G	A	SNP	SLC5A2	ENST00000330498	human	ensembl	74_37	+1	known	missense	c.1673	p.R558H	1.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A2	HGNC	ENSG00000140675	tier1	-	-	70	0	0.00	59	6	9.23
GUSBP11	0	genome.wustl.edu	37	22	23980848	23980848	+	RNA	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	22	23980848	23980848	G	A	SNP	GUSBP11	ENST00000422506	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.212	-	-	-	no_errors	GUSBP11	HGNC	ENSG00000228315	tier1	-	-	80	0	0.00	42	14	25.00
LRFN5	0	genome.wustl.edu	37	14	42356845	42356845	+	Silent	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	14	42356845	42356845	C	T	SNP	LRFN5	ENST00000298119	human	ensembl	74_37	+1	known	silent	c.1017	p.N339	0.999	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN5	HGNC	ENSG00000165379	tier1	-	-	112	0	0.00	67	6	8.22
NCOA4	0	genome.wustl.edu	37	10	51585393	51585393	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	10	51585393	51585393	C	T	SNP	NCOA4	ENST00000452682	human	ensembl	74_37	+1	known	missense	c.1540	p.L514F	1.000	NULL	pfam_ARA70	-	no_errors	NCOA4	HGNC	ENSG00000138293	tier1	-	-	121	0	0.00	45	46	50.55
PMS1	0	genome.wustl.edu	37	2	190660493	190660495	+	Splice_Site	DEL	AGG	AGG	-			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	2	190660493	190660495	AGG	-	DEL	PMS1	ENST00000441310	human	ensembl	74_37	+1	known	splice_site_del	c.133-2_133-1	e2-1	0.998:1.000:1.000	-	-	-	no_errors	PMS1	HGNC	ENSG00000064933	tier1			189	0	0.00	105	14	11.76
LOC100506060	0	genome.wustl.edu	37	16	70268960	70268960	+	RNA	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	16	70268960	70268960	G	A	SNP	LOC100506060	ENST00000568855	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-296I10.6	Clone_based_vega_gene	ENSG00000261556	tier1	-	-	496	0	0.00	304	38	11.11
SCN8A	0	genome.wustl.edu	37	12	52162854	52162854	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	12	52162854	52162854	A	C	SNP	SCN8A	ENST00000354534	human	ensembl	74_37	+1	known	missense	c.3107	p.E1036A	1.000	pfam_Na_trans_assoc,prints_Na_channel_a8su	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	tier1	-	-	43	0	0.00	36	6	14.29
NKTR	0	genome.wustl.edu	37	3	42684025	42684025	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	3	42684025	42684025	G	T	SNP	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	missense	c.4079	p.G1360V	0.996	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857	tier1	-	-	79	0	0.00	45	4	8.16
WNT2	0	genome.wustl.edu	37	7	116960808	116960808	+	Silent	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	7	116960808	116960808	G	A	SNP	WNT2	ENST00000265441	human	ensembl	74_37	-1	known	silent	c.123	p.C41	1.000	pfam_Wnt,prints_Wnt2	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2	HGNC	ENSG00000105989	tier1	rs140391205	-	22	0	0.00	10	6	37.50
SYNJ2BP	0	genome.wustl.edu	37	14	70839377	70839377	+	RNA	SNP	C	C	G			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	14	70839377	70839377	C	G	SNP	SYNJ2BP	ENST00000554216	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.479	-	-	-	no_errors	SYNJ2BP	HGNC	ENSG00000213463	tier1	-	-	82	0	0.00	54	12	18.18
RAB42	0	genome.wustl.edu	37	1	28920653	28920653	+	RNA	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	1	28920653	28920653	C	T	SNP	RAB42	ENST00000465518	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RAB42	HGNC	ENSG00000188060	tier1	-	-	66	0	0.00	39	4	9.30
TANGO6	0	genome.wustl.edu	37	16	68894024	68894024	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	16	68894024	68894024	G	A	SNP	TANGO6	ENST00000261778	human	ensembl	74_37	+1	known	missense	c.332	p.R111H	0.000	NULL	pfam_DUF2435,pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TANGO6	HGNC	ENSG00000103047	tier1	rs199965791	-	56	0	0.00	41	15	26.79
TCHH	0	genome.wustl.edu	37	1	152085555	152085555	+	Splice_Site	SNP	C	C	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	1	152085555	152085555	C	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	splice_site	c.139-1	e2-1	0.985	-	-	-	no_errors	TCHH	HGNC	ENSG00000159450	tier1	-	-	35	0	0.00	20	3	13.04
ZNF707	0	genome.wustl.edu	37	8	144776688	144776688	+	Silent	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	8	144776688	144776688	C	T	SNP	ZNF707	ENST00000358656	human	ensembl	74_37	+1	known	silent	c.1104	p.H368	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF707	HGNC	ENSG00000181135	tier1	-	-	99	0	0.00	41	36	46.75
NCOA3	0	genome.wustl.edu	37	20	46279860	46279860	+	Silent	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	20	46279860	46279860	G	A	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	silent	c.3786	p.Q1262	0.996	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151	tier1	rs151060280	-	51	0	0.00	32	5	13.51
GPR124	0	genome.wustl.edu	37	8	37696483	37696483	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	8	37696483	37696483	G	A	SNP	GPR124	ENST00000412232	human	ensembl	74_37	+1	known	missense	c.2269	p.A757T	0.016	pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR124	HGNC	ENSG00000020181	tier1	rs143113584	-	70	0	0.00	50	11	18.03
RAPGEF2	0	genome.wustl.edu	37	4	160264507	160264507	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	4	160264507	160264507	G	T	SNP	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	missense	c.2722	p.G908C	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756	tier1	-	-	40	0	0.00	32	4	11.11
SCN2A	0	genome.wustl.edu	37	2	166245201	166245201	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	2	166245201	166245201	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.4885	p.R1629C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	tier1	-	-	220	0	0.00	132	23	14.84
SLC17A4	0	genome.wustl.edu	37	6	25777120	25777120	+	Silent	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	6	25777120	25777120	C	T	SNP	SLC17A4	ENST00000377905	human	ensembl	74_37	+1	known	silent	c.1201	p.L401	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A4	HGNC	ENSG00000146039	tier1	-	-	38	0	0.00	21	7	25.00
PLA2G4E	0	genome.wustl.edu	37	15	42302375	42302375	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	15	42302375	42302375	G	A	SNP	PLA2G4E	ENST00000413860	human	ensembl	74_37	-1	known	missense	c.71	p.P24L	0.006	NULL	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089	tier1	-	-	161	0	0.00	136	18	11.61
SP140	0	genome.wustl.edu	37	2	231109717	231109717	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	2	231109717	231109717	T	C	SNP	SP140	ENST00000392045	human	ensembl	74_37	+1	known	missense	c.586	p.S196P	0.001	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263	tier1	-	-	58	0	0.00	26	17	39.53
VPS39	0	genome.wustl.edu	37	15	42479973	42479973	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	15	42479973	42479973	C	T	SNP	VPS39	ENST00000348544	human	ensembl	74_37	-1	known	missense	c.457	p.E153K	1.000	pfam_Citron,superfamily_WD40_repeat_dom,smart_Citron	pfam_Citron,pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,smart_Citron	-	no_errors	VPS39	HGNC	ENSG00000166887	tier1	-	-	54	0	0.00	38	4	9.52
TULP2	0	genome.wustl.edu	37	19	49399789	49399789	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	19	49399789	49399789	G	C	SNP	TULP2	ENST00000221399	human	ensembl	74_37	-1	known	missense	c.109	p.R37G	1.000	prints_Tubby_N	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP2	HGNC	ENSG00000104804	tier1	-	-	111	0	0.00	90	27	23.08
POMC	0	genome.wustl.edu	37	2	25384456	25384457	+	In_Frame_Ins	INS	-	-	GCCGCTGCT			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	2	25384456	25384457	-	GCCGCTGCT	INS	POMC	ENST00000264708	human	ensembl	74_37	-1	known	in_frame_ins	c.298_297	p.99in_frame_insSSG	0.404:0.522	NULL	pfam_Mcrtin_ACTH_cent,pfam_Melanocortin_N,pfam_Opioid_neuropept,prints_Mcortin_ACTH	-	no_errors	POMC	HGNC	ENSG00000115138	tier1			NA	NA	NA	NA	NA	NA
IPO9	0	genome.wustl.edu	37	1	201844297	201844297	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	1	201844297	201844297	G	T	SNP	IPO9	ENST00000361565	human	ensembl	74_37	+1	known	missense	c.2956	p.D986Y	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO9	HGNC	ENSG00000198700	tier1	-	-	63	0	0.00	41	4	8.89
ABTB2	0	genome.wustl.edu	37	11	34194817	34194817	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	11	34194817	34194817	G	A	SNP	ABTB2	ENST00000435224	human	ensembl	74_37	-1	known	missense	c.1282	p.R428C	1.000	NULL	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016	tier1	-	-	93	0	0.00	57	16	21.92
LOC401127	0	genome.wustl.edu	37	4	39482041	39482041	+	RNA	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	4	39482041	39482041	C	T	SNP	LOC401127	ENST00000513652	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	RP11-472B18.1	Clone_based_vega_gene	ENSG00000224097	tier1	-	-	23	0	0.00	27	5	15.62
HIST1H3C	0	genome.wustl.edu	37	6	26045798	26045798	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	6	26045798	26045798	C	T	SNP	HIST1H3C	ENST00000540144	human	ensembl	74_37	+1	known	missense	c.160	p.R54C	1.000	superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3C	HGNC	ENSG00000196532	tier1	-	-	91	0	0.00	58	13	18.31
WNK1	0	genome.wustl.edu	37	12	970296	970297	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	12	970296	970297	-	A	INS	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	frame_shift_ins	c.1738_1739	p.K584fs	1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	tier1			58	0	0.00	31	3	8.82
KMT2C	0	genome.wustl.edu	37	7	151833996	151833996	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	7	151833996	151833996	T	G	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.14828	p.Y4943S	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609	tier1	-	-	44	0	0.00	34	4	10.53
ALKBH3	0	genome.wustl.edu	37	11	43908185	43908185	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	11	43908185	43908185	C	A	SNP	ALKBH3	ENST00000302708	human	ensembl	74_37	+1	known	nonsense	c.248	p.S83*	0.924	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH3	HGNC	ENSG00000166199	tier1	-	-	112	0	0.00	46	4	8.00
TBC1D4	0	genome.wustl.edu	37	13	75915685	75915685	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	13	75915685	75915685	G	T	SNP	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	missense	c.1447	p.H483N	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	tier1	-	-	37	0	0.00	14	3	17.65
ARMCX1	0	genome.wustl.edu	37	X	100808828	100808828	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	X	100808828	100808828	G	T	SNP	ARMCX1	ENST00000372829	human	ensembl	74_37	+1	known	missense	c.915	p.Q305H	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947	tier1	-	-	53	0	0.00	22	3	12.00
KIAA1009	0	genome.wustl.edu	37	6	84928931	84928931	+	Silent	SNP	G	G	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	6	84928931	84928931	G	T	SNP	KIAA1009	ENST00000435955	human	ensembl	74_37	-1	known	silent	c.174	p.G58	0.006	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315	tier1	-	-	63	0	0.00	32	4	10.81
CCDC82	0	genome.wustl.edu	37	11	96116635	96116635	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	11	96116635	96116635	G	T	SNP	CCDC82	ENST00000278520	human	ensembl	74_37	-1	known	missense	c.789	p.D263E	0.998	NULL	NULL	-	no_errors	CCDC82	HGNC	ENSG00000149231	tier1	-	-	62	0	0.00	11	3	21.43
LAMA1	0	genome.wustl.edu	37	18	7015825	7015825	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	18	7015825	7015825	C	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.3022	p.D1008Y	1.000	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	tier1	-	-	45	0	0.00	35	4	10.26
EMC1	0	genome.wustl.edu	37	1	19545484	19545485	+	RNA	INS	-	-	AAAAC			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	1	19545484	19545485	-	AAAAC	INS	EMC1	ENST00000461353	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	EMC1	HGNC	ENSG00000127463	tier1			NA	NA	NA	NA	NA	NA
