Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
KIF27	0	genome.wustl.edu	37	9	86518547	86518547	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	9	86518547	86518547	C	T	SNP	KIF27	ENST00000297814	human	ensembl	74_37	-1	known	missense	c.886	p.A296T	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	tier1	-	-	35	0	0.00	15	14	48.28
TSKU	0	genome.wustl.edu	37	11	76506673	76506675	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	11	76506673	76506675	CTG	-	DEL	TSKU	ENST00000333090	human	ensembl	74_37	+1	known	in_frame_del	c.13_15	p.L8in_frame_del	0.997:1.000:0.997	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	TSKU	HGNC	ENSG00000182704	tier1			30	0	0.00	22	3	12.00
ENSG00000253200	0	genome.wustl.edu	37	8	22472255	22472256	+	RNA	INS	-	-	TGCTGCCTTCATCCTGATGGGT			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	8	22472255	22472256	-	TGCTGCCTTCATCCTGATGGGT	INS	ENSG00000253200	ENST00000521025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-582J16.5	Clone_based_vega_gene	ENSG00000253200	tier1			NA	NA	NA	NA	NA	NA
ENSG00000252989	0	genome.wustl.edu	37	3	100364973	100364973	+	RNA	SNP	G	G	A			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	3	100364973	100364973	G	A	SNP	ENSG00000252989	ENST00000517180	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA31	RFAM	ENSG00000252989	tier1	-	-	60	0	0.00	15	4	21.05
RNU6-172P	0	genome.wustl.edu	37	12	102190269	102190270	+	RNA	INS	-	-	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	12	102190269	102190270	-	T	INS	RNU6-172P	ENST00000411000	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.004	-	-	-	no_errors	RNU6-172P	HGNC	ENSG00000222932	tier1			13	0	0.00	7	3	30.00
MYADML	0	genome.wustl.edu	37	2	33952147	33952147	+	RNA	SNP	G	G	A			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	2	33952147	33952147	G	A	SNP	MYADML	ENST00000474610	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	MYADML	HGNC	ENSG00000239649	tier1	-	-	55	0	0.00	36	4	9.76
KANK3	0	genome.wustl.edu	37	19	8398950	8398961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	TCGCTGTCGCCA	-			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	TCGCTGTCGCCA	TCGCTGTCGCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	19	8398950	8398961	TCGCTGTCGCCA	-	DEL	KANK3	ENST00000593649	human	ensembl	74_37	-1	known	in_frame_del	c.1478_1467	p.DGDS489in_frame_del	0.002:0.046:0.028:0.025:0.017:0.004:0.003:0.002:0.000:0.001:0.003:0.001	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	KANK3	HGNC	ENSG00000186994	tier1			NA	NA	NA	NA	NA	NA
CCDC178	0	genome.wustl.edu	37	18	30554563	30554563	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	18	30554563	30554563	G	A	SNP	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	missense	c.2543	p.A848V	0.977	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960	tier1	-	-	25	0	0.00	15	5	25.00
LRMP	0	genome.wustl.edu	37	12	25188658	25188658	+	RNA	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	12	25188658	25188658	G	T	SNP	LRMP	ENST00000555165	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LRMP	HGNC	ENSG00000118308	tier1	-	-	28	0	0.00	28	4	12.50
FAM210A	0	genome.wustl.edu	37	18	13682040	13682040	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	18	13682040	13682040	C	T	SNP	FAM210A	ENST00000322247	human	ensembl	74_37	-1	known	missense	c.37	p.A13T	0.994	NULL	pfam_DUF1279	-	no_errors	FAM210A	HGNC	ENSG00000177150	tier1	-	-	29	0	0.00	11	3	21.43
PRKXP1	0	genome.wustl.edu	37	15	101088125	101088126	+	RNA	INS	-	-	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	15	101088125	101088126	-	T	INS	PRKXP1	ENST00000602585	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-526I2.5	Clone_based_vega_gene	ENSG00000270127	tier1			30	0	0.00	15	2	11.76
VAV2	0	genome.wustl.edu	37	9	136726433	136726433	+	RNA	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	9	136726433	136726433	G	T	SNP	VAV2	ENST00000486113	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	VAV2	HGNC	ENSG00000160293	tier1	-	-	44	0	0.00	33	5	13.16
MIR4668	0	genome.wustl.edu	37	9	114694384	114694385	+	RNA	DEL	AA	AA	-			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	9	114694384	114694385	AA	-	DEL	MIR4668	ENST00000582284	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MIR4668	HGNC	ENSG00000266315	tier1			21	0	0.00	18	2	10.00
NCOR2	0	genome.wustl.edu	37	12	124827641	124827641	+	Silent	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	12	124827641	124827641	G	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	silent	c.4867	p.R1623	0.981	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	tier1	-	-	42	0	0.00	35	4	10.26
WISP3	0	genome.wustl.edu	37	6	112375434	112375434	+	RNA	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	6	112375434	112375434	G	T	SNP	WISP3	ENST00000483439	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	WISP3	HGNC	ENSG00000112761	tier1	-	-	38	0	0.00	38	4	9.52
CRABP2	0	genome.wustl.edu	37	1	156670772	156670772	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	1	156670772	156670772	C	-	DEL	CRABP2	ENST00000368221	human	ensembl	74_37	-1	known	frame_shift_del	c.143	p.G48fs	0.696	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	CRABP2	HGNC	ENSG00000143320	tier1			16	0	0.00	8	5	38.46
MEG3	0	genome.wustl.edu	37	14	101301191	101301191	+	RNA	SNP	G	G	C			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	14	101301191	101301191	G	C	SNP	MEG3	ENST00000398461	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MEG3	HGNC	ENSG00000214548	tier1	-	-	15	0	0.00	5	8	61.54
ENSG00000267075	0	genome.wustl.edu	37	17	20451533	20451533	+	RNA	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	17	20451533	20451533	G	T	SNP	ENSG00000267075	ENST00000591705	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.947	-	-	-	no_errors	RP11-434D2.3	Clone_based_vega_gene	ENSG00000267075	tier1	-	-	32	0	0.00	18	18	50.00
FRMPD1	0	genome.wustl.edu	37	9	37745028	37745028	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	9	37745028	37745028	C	-	DEL	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	frame_shift_del	c.2999	p.E1003fs	0.000	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601	tier1			42	0	0.00	16	2	11.11
DZIP1	0	genome.wustl.edu	37	13	96282277	96282277	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	13	96282277	96282277	G	T	SNP	DZIP1	ENST00000347108	human	ensembl	74_37	-1	known	missense	c.776	p.A259D	0.822	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DZIP1	HGNC	ENSG00000134874	tier1	-	-	40	0	0.00	28	3	9.68
HSP90AA4P	0	genome.wustl.edu	37	4	190395838	190395839	+	RNA	INS	-	-	A			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	4	190395838	190395839	-	A	INS	HSP90AA4P	ENST00000378770	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	HSP90AA4P	HGNC	ENSG00000205100	tier1			54	0	0.00	32	4	11.11
SF3A1	0	genome.wustl.edu	37	22	30736341	30736341	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	22	30736341	30736341	G	T	SNP	SF3A1	ENST00000215793	human	ensembl	74_37	-1	known	missense	c.1219	p.P407T	1.000	pfam_PRP21-like	pfam_PRP21-like,pfam_Surp,pfam_Ubiquitin_dom,superfamily_Surp,smart_Surp,smart_Ubiquitin_dom,pfscan_Surp,pfscan_Ubiquitin_supergroup	-	no_errors	SF3A1	HGNC	ENSG00000099995	tier1	-	-	33	0	0.00	22	4	15.38
IQUB	0	genome.wustl.edu	37	7	123143075	123143075	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	7	123143075	123143075	C	A	SNP	IQUB	ENST00000324698	human	ensembl	74_37	-1	known	nonsense	c.790	p.E264*	1.000	NULL	pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675	tier1	-	-	51	0	0.00	16	3	15.79
RHBDF1	0	genome.wustl.edu	37	16	110229	110229	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	16	110229	110229	G	T	SNP	RHBDF1	ENST00000262316	human	ensembl	74_37	-1	known	missense	c.1707	p.D569E	1.000	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384	tier1	-	-	40	0	0.00	32	4	11.11
AXL	0	genome.wustl.edu	37	19	41754471	41754471	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	19	41754471	41754471	G	T	SNP	AXL	ENST00000301178	human	ensembl	74_37	+1	known	missense	c.1590	p.M530I	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601	tier1	-	-	33	0	0.00	18	3	14.29
ROM1	0	genome.wustl.edu	37	11	62381084	62381084	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	11	62381084	62381084	G	-	DEL	ROM1	ENST00000278833	human	ensembl	74_37	+1	known	frame_shift_del	c.331	p.L114fs	0.023	pfam_Tetraspanin/Peripherin,prints_Peripherin/rom-1	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Peripherin/rom-1	-	no_errors	ROM1	HGNC	ENSG00000149489	tier1			56	0	0.00	46	4	8.00
FAM135A	0	genome.wustl.edu	37	6	71234535	71234535	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	6	71234535	71234535	C	T	SNP	FAM135A	ENST00000418814	human	ensembl	74_37	+1	known	missense	c.1748	p.T583I	1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269	tier1	-	-	70	0	0.00	40	4	9.09
EEF2	0	genome.wustl.edu	37	19	3980914	3980914	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	19	3980914	3980914	G	A	SNP	EEF2	ENST00000309311	human	ensembl	74_37	-1	known	missense	c.1075	p.P359S	1.000	superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658	tier1	-	-	41	0	0.00	34	4	10.53
ENSG00000228157	0	genome.wustl.edu	37	17	18997160	18997182	+	Frame_Shift_Del	DEL	GGGGTAAAGCCAGAGCCGGGCCC	GGGGTAAAGCCAGAGCCGGGCCC	-			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	GGGGTAAAGCCAGAGCCGGGCCC	GGGGTAAAGCCAGAGCCGGGCCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	17	18997160	18997182	GGGGTAAAGCCAGAGCCGGGCCC	-	DEL	ENSG00000228157	ENST00000428928	human	ensembl	74_37	+1	known	frame_shift_del	c.498_504	p.G167fs	0.000:0.000:0.001:0.000:0.000:0.001:0.003	NULL	NULL	-	no_errors	AC007952.5	Clone_based_vega_gene	ENSG00000228157	tier1			NA	NA	NA	NA	NA	NA
LINC00922	0	genome.wustl.edu	37	16	65397135	65397135	+	RNA	SNP	T	T	G			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	16	65397135	65397135	T	G	SNP	LINC00922	ENST00000564041	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.377	-	-	-	no_errors	LINC00922	HGNC	ENSG00000261742	tier1	-	-	69	0	0.00	29	39	57.35
ATXN2	0	genome.wustl.edu	37	12	112036781	112036785	+	Frame_Shift_Del	DEL	GTTGC	GTTGC	-			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	GTTGC	GTTGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	12	112036781	112036785	GTTGC	-	DEL	ATXN2	ENST00000377617	human	ensembl	74_37	-1	known	frame_shift_del	c.538_534	p.Q179fs	0.009:0.008:0.017:0.025:0.032	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	tier1			NA	NA	NA	NA	NA	NA
MYO15A	0	genome.wustl.edu	37	17	18045519	18045519	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	17	18045519	18045519	C	T	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.5776	p.R1926C	1.000	superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	tier1	-	-	53	0	0.00	36	4	10.00
IGFN1	0	genome.wustl.edu	37	1	201177421	201177421	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	1	201177421	201177421	G	T	SNP	IGFN1	ENST00000335211	human	ensembl	74_37	+1	known	missense	c.3400	p.G1134W	0.352	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGFN1	HGNC	ENSG00000163395	tier1	-	-	24	0	0.00	22	4	15.38
DLG4	0	genome.wustl.edu	37	17	7096278	7096278	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	17	7096278	7096278	C	T	SNP	DLG4	ENST00000399510	human	ensembl	74_37	-1	known	missense	c.1981	p.E661K	1.000	pirsf_M-assoc_guanylate_kinase,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pirsf_M-assoc_guanylate_kinase,pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,pfam_L27_1,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG4	HGNC	ENSG00000132535	tier1	-	-	34	0	0.00	38	4	9.52
CNTLN	0	genome.wustl.edu	37	9	17394809	17394809	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	9	17394809	17394809	A	T	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	missense	c.2357	p.N786I	0.998	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	tier1	-	-	40	0	0.00	18	11	37.93
ABL1	0	genome.wustl.edu	37	9	133738153	133738156	+	Frame_Shift_Del	DEL	TACG	TACG	-			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	TACG	TACG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	9	133738153	133738156	TACG	-	DEL	ABL1	ENST00000372348	human	ensembl	74_37	+1	known	frame_shift_del	c.610_613	p.Y204fs	1.000:1.000:1.000:1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007	tier1			22	0	0.00	11	10	47.62
MT-ND5	0	genome.wustl.edu	37	MT	13589	13589	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	MT	13589	13589	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.1253	p.L418P	NULL	tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786	tier1	-	-	32	0	0.00	7	2	22.22
DDHD2	0	genome.wustl.edu	37	8	38099572	38099572	+	RNA	DEL	A	A	-			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	8	38099572	38099572	A	-	DEL	DDHD2	ENST00000528888	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	DDHD2	HGNC	ENSG00000085788	tier1			10	0	0.00	6	3	33.33
RPP38	0	genome.wustl.edu	37	10	15145497	15145497	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	10	15145497	15145497	G	T	SNP	RPP38	ENST00000378197	human	ensembl	74_37	+1	known	missense	c.184	p.D62Y	0.027	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	RPP38	HGNC	ENSG00000152464	tier1	-	-	33	0	0.00	14	4	22.22
PTPRJ	0	genome.wustl.edu	37	11	48142635	48142635	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	11	48142635	48142635	G	T	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	missense	c.433	p.A145S	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	tier1	-	-	56	0	0.00	35	4	10.26
