Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TANGO6	0	genome.wustl.edu	37	16	68894239	68894239	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	16	68894239	68894239	G	T	SNP	TANGO6	ENST00000261778	human	ensembl	74_37	+1	known	missense	c.547	p.V183L	0.525	NULL	pfam_DUF2435,pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TANGO6	HGNC	ENSG00000103047	tier1	-	-	90	0	0.00	40	6	13.04
DOCK10	0	genome.wustl.edu	37	2	225738817	225738817	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	2	225738817	225738817	G	T	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.1153	p.P385T	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	tier1	-	-	57	0	0.00	42	4	8.70
ANK3	0	genome.wustl.edu	37	10	61833769	61833769	+	Silent	SNP	C	C	G			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	10	61833769	61833769	C	G	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	silent	c.6870	p.L2290	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	tier1	-	-	76	0	0.00	25	6	19.35
ITGA5	0	genome.wustl.edu	37	12	54798668	54798668	+	Silent	SNP	G	G	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	12	54798668	54798668	G	T	SNP	ITGA5	ENST00000293379	human	ensembl	74_37	-1	known	silent	c.1236	p.I412	0.903	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA5	HGNC	ENSG00000161638	tier1	-	-	22	0	0.00	18	4	18.18
IL17RA	0	genome.wustl.edu	37	22	17590484	17590484	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	22	17590484	17590484	C	A	SNP	IL17RA	ENST00000319363	human	ensembl	74_37	+1	known	missense	c.2375	p.S792Y	0.999	NULL	pfam_SEFIR	-	no_errors	IL17RA	HGNC	ENSG00000177663	tier1	-	-	39	0	0.00	26	22	45.83
CIDEA	0	genome.wustl.edu	37	18	12254562	12254563	+	Frame_Shift_Ins	INS	-	-	CCGCGCACACACCCAT			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	18	12254562	12254563	-	CCGCGCACACACCCAT	INS	CIDEA	ENST00000522713	human	ensembl	74_37	+1	known	frame_shift_ins	c.180_181	p.H64fs	0.077:0.122	NULL	NULL	-	no_errors	CIDEA	HGNC	ENSG00000176194	tier1			NA	NA	NA	NA	NA	NA
NSD1	0	genome.wustl.edu	37	5	176673790	176673790	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	5	176673790	176673790	G	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.4490	p.G1497V	0.000	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	tier1	-	-	48	0	0.00	56	5	8.20
CRY1	0	genome.wustl.edu	37	12	107395061	107395061	+	Missense_Mutation	SNP	T	T	A			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	12	107395061	107395061	T	A	SNP	CRY1	ENST00000008527	human	ensembl	74_37	-1	known	missense	c.681	p.R227S	1.000	pfam_Photolyase_FAD-bd/Cryptochr_C,superfamily_Photolyase_FAD-bd/Cryptochr_C	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY1	HGNC	ENSG00000008405	tier1	-	-	12	0	0.00	10	5	33.33
PHF19	0	genome.wustl.edu	37	9	123632017	123632017	+	Frame_Shift_Del	DEL	A	A	-			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	9	123632017	123632017	A	-	DEL	PHF19	ENST00000312189	human	ensembl	74_37	-1	known	frame_shift_del	c.571	p.W191fs	0.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD	-	no_errors	PHF19	HGNC	ENSG00000119403	tier1			28	0	0.00	17	2	10.53
GNPAT	0	genome.wustl.edu	37	1	231411035	231411035	+	Silent	SNP	C	C	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	1	231411035	231411035	C	T	SNP	GNPAT	ENST00000366647	human	ensembl	74_37	+1	known	silent	c.1812	p.V604	0.782	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	GNPAT	HGNC	ENSG00000116906	tier1	-	-	70	0	0.00	46	37	44.58
SERPINA10	0	genome.wustl.edu	37	14	94756550	94756567	+	In_Frame_Del	DEL	CCCTCTCTTGATCTGGGT	CCCTCTCTTGATCTGGGT	-			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	CCCTCTCTTGATCTGGGT	CCCTCTCTTGATCTGGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	14	94756550	94756567	CCCTCTCTTGATCTGGGT	-	DEL	SERPINA10	ENST00000261994	human	ensembl	74_37	-1	known	in_frame_del	c.381_364	p.TQIKRG122in_frame_del	0.000:0.001:0.005:0.000:0.000:0.000:0.000:0.006:0.004:0.020:0.889:0.896:0.983:0.984:0.952:0.432:0.014:0.001	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA10	HGNC	ENSG00000140093	tier1			NA	NA	NA	NA	NA	NA
ENSG00000261505	0	genome.wustl.edu	37	16	1371423	1371431	+	RNA	DEL	CTGAGGGGT	CTGAGGGGT	-			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	CTGAGGGGT	CTGAGGGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	16	1371423	1371431	CTGAGGGGT	-	DEL	ENSG00000261505	ENST00000568106	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.001:0.000:0.001:0.001:0.000	-	-	-	no_errors	LA16c-358B7.3	Clone_based_vega_gene	ENSG00000261505	tier1			NA	NA	NA	NA	NA	NA
BCORL1	0	genome.wustl.edu	37	X	129168446	129168446	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	X	129168446	129168446	G	T	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	missense	c.4322	p.S1441I	0.875	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	tier1	-	-	27	0	0.00	15	3	16.67
SLC6A12	0	genome.wustl.edu	37	12	306031	306031	+	Missense_Mutation	SNP	T	T	C			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	12	306031	306031	T	C	SNP	SLC6A12	ENST00000359674	human	ensembl	74_37	-1	known	missense	c.1093	p.I365V	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_betaine	-	no_errors	SLC6A12	HGNC	ENSG00000111181	tier1	-	-	48	0	0.00	26	5	16.13
ENSG00000234613	0	genome.wustl.edu	37	X	45772969	45772969	+	RNA	SNP	A	A	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	X	45772969	45772969	A	T	SNP	ENSG00000234613	ENST00000420585	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.988	-	-	-	no_errors	RP5-1158E12.1	Clone_based_vega_gene	ENSG00000234613	tier1	-	-	9	0	0.00	0	8	100.00
ARHGAP5	0	genome.wustl.edu	37	14	32561313	32561313	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	14	32561313	32561313	C	T	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	nonsense	c.1438	p.R480*	1.000	superfamily_FF_domain,smart_FF_domain	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	tier1	rs201986816	-	52	0	0.00	46	5	9.80
RGS2	0	genome.wustl.edu	37	1	192778205	192778205	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	1	192778205	192778205	C	T	SNP	RGS2	ENST00000235382	human	ensembl	74_37	+1	known	nonsense	c.4	p.Q2*	1.000	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS2	HGNC	ENSG00000116741	tier1	-	-	60	0	0.00	42	12	22.22
ENSG00000234722	0	genome.wustl.edu	37	7	153109949	153109949	+	RNA	SNP	A	A	G			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	7	153109949	153109949	A	G	SNP	ENSG00000234722	ENST00000416982	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.044	-	-	-	no_errors	AC073236.3	Clone_based_vega_gene	ENSG00000234722	tier1	-	-	30	0	0.00	31	7	18.42
MEF2A	0	genome.wustl.edu	37	15	100252710	100252715	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	CAGCAG	CAGCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	15	100252710	100252715	CAGCAG	-	DEL	MEF2A	ENST00000338042	human	ensembl	74_37	+1	known	in_frame_del	c.1255_1260	p.QQ422in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2A	HGNC	ENSG00000068305	tier1			NA	NA	NA	NA	NA	NA
BCLAF1	0	genome.wustl.edu	37	6	136599100	136599100	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	6	136599100	136599100	G	A	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.919	p.P307S	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363	tier1	-	-	255	0	0.00	196	42	17.65
PLOD3	0	genome.wustl.edu	37	7	100854936	100854936	+	Frame_Shift_Del	DEL	G	G	-			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	7	100854936	100854936	G	-	DEL	PLOD3	ENST00000223127	human	ensembl	74_37	-1	known	frame_shift_del	c.1294	p.L432fs	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397	tier1			118	0	0.00	55	36	39.56
ENSG00000237452	0	genome.wustl.edu	37	19	46265047	46265048	+	In_Frame_Ins	INS	-	-	TCCAGC			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	19	46265047	46265048	-	TCCAGC	INS	ENSG00000237452	ENST00000457052	human	ensembl	74_37	+1	putative	in_frame_ins	c.1356_1357	p.456in_frame_insSS	0.000:0.004	NULL	pfam_HMG_box_dom,pfam_bHLH_dom,superfamily_HMG_box_dom,superfamily_bHLH_dom,smart_HMG_box_dom,pfscan_bHLH_dom,pfscan_HMG_box_dom	-	no_errors	AC074212.3	Clone_based_vega_gene	ENSG00000237452	tier1			NA	NA	NA	NA	NA	NA
INTS3	0	genome.wustl.edu	37	1	153734135	153734135	+	Missense_Mutation	SNP	C	C	G			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	1	153734135	153734135	C	G	SNP	INTS3	ENST00000318967	human	ensembl	74_37	+1	known	missense	c.1499	p.P500R	1.000	NULL	pfam_Int_cplx_su3	-	no_errors	INTS3	HGNC	ENSG00000143624	tier1	-	-	35	0	0.00	32	16	33.33
PLD5	0	genome.wustl.edu	37	1	242253161	242253161	+	Missense_Mutation	SNP	C	C	G			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	1	242253161	242253161	C	G	SNP	PLD5	ENST00000536534	human	ensembl	74_37	-1	known	missense	c.1606	p.V536L	0.013	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	tier1	-	-	141	0	0.00	65	70	51.85
ACADSB	0	genome.wustl.edu	37	10	124800090	124800090	+	Missense_Mutation	SNP	T	T	G			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	10	124800090	124800090	T	G	SNP	ACADSB	ENST00000358776	human	ensembl	74_37	+1	known	missense	c.412	p.F138V	0.000	pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADSB	HGNC	ENSG00000196177	tier1	-	-	102	0	0.00	12	42	77.78
ENSG00000259668	0	genome.wustl.edu	37	15	51751092	51751097	+	RNA	DEL	AGCAGC	AGCAGC	-			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	AGCAGC	AGCAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	15	51751092	51751097	AGCAGC	-	DEL	ENSG00000259668	ENST00000559173	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994:0.992:0.991:0.990:0.990:0.990	-	-	-	no_errors	RP11-707P17.2	Clone_based_vega_gene	ENSG00000259668	tier1			NA	NA	NA	NA	NA	NA
CEP170B	0	genome.wustl.edu	37	14	105352885	105352890	+	In_Frame_Del	DEL	GCAGGA	GCAGGA	-			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	GCAGGA	GCAGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	14	105352885	105352890	GCAGGA	-	DEL	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	in_frame_del	c.2312_2317	p.RS772in_frame_del	0.001:0.000:0.000:0.003:0.103:0.181	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814	tier1			NA	NA	NA	NA	NA	NA
ENSG00000224671	0	genome.wustl.edu	37	1	203121710	203121728	+	RNA	DEL	TTTTTCCTGTCCCACGGGA	TTTTTCCTGTCCCACGGGA	-			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	TTTTTCCTGTCCCACGGGA	TTTTTCCTGTCCCACGGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	1	203121710	203121728	TTTTTCCTGTCCCACGGGA	-	DEL	ENSG00000224671	ENST00000434265	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.027:0.036:0.047:0.024:0.003:0.003:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.002:0.160:0.554	-	-	-	no_errors	RP11-335O13.8	Clone_based_vega_gene	ENSG00000224671	tier1			NA	NA	NA	NA	NA	NA
ZNF300P1	0	genome.wustl.edu	37	5	150323571	150323571	+	RNA	SNP	T	T	C			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	5	150323571	150323571	T	C	SNP	ZNF300P1	ENST00000520773	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF300P1	HGNC	ENSG00000197083	tier1	-	-	10	0	0.00	5	7	58.33
GC	0	genome.wustl.edu	37	4	72620173	72620173	+	Missense_Mutation	SNP	A	A	C			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	4	72620173	72620173	A	C	SNP	GC	ENST00000273951	human	ensembl	74_37	-1	known	missense	c.1217	p.L406R	0.950	pfam_VitD-bind_III,superfamily_Serum_albumin-like,prints_VitD-bd	pfam_Serum_albumin_N,pfam_VitD-bind_III,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_VitD-bd,prints_ALB/AFP/VDB	-	no_errors	GC	HGNC	ENSG00000145321	tier1	-	-	82	0	0.00	41	30	42.25
MCM3AP-AS1	0	genome.wustl.edu	37	21	47662900	47662900	+	RNA	DEL	A	A	-			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	21	47662900	47662900	A	-	DEL	MCM3AP-AS1	ENST00000421927	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MCM3AP-AS1	HGNC	ENSG00000215424	tier1			12	0	0.00	6	8	57.14
COL27A1	0	genome.wustl.edu	37	9	117031280	117031281	+	RNA	INS	-	-	TGGTGT			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	9	117031280	117031281	-	TGGTGT	INS	COL27A1	ENST00000477421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010:0.009	-	-	-	no_errors	COL27A1	HGNC	ENSG00000196739	tier1			NA	NA	NA	NA	NA	NA
DNM1P46	0	genome.wustl.edu	37	15	100347042	100347042	+	RNA	SNP	A	A	G			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	15	100347042	100347042	A	G	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.637	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397	tier1	-	-	16	0	0.00	20	7	25.93
PSMG4	0	genome.wustl.edu	37	6	3263936	3263936	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	6	3263936	3263936	A	G	SNP	PSMG4	ENST00000419065	human	ensembl	74_37	+1	known	missense	c.193	p.T65A	0.998	NULL	NULL	-	no_errors	PSMG4	HGNC	ENSG00000180822	tier1	-	-	87	0	0.00	37	26	40.62
OR5G5P	0	genome.wustl.edu	37	11	56569579	56569579	+	RNA	SNP	G	G	A			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	11	56569579	56569579	G	A	SNP	OR5G5P	ENST00000378368	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	OR5G5P	HGNC	ENSG00000205025	tier1	rs137945535	GMAF=0.0005	25	0	0.00	20	4	16.67
C22orf29	0	genome.wustl.edu	37	22	19839506	19839506	+	Silent	SNP	C	C	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	22	19839506	19839506	C	T	SNP	C22orf29	ENST00000328554	human	ensembl	74_37	-1	known	silent	c.279	p.R93	0.031	NULL	NULL	-	no_errors	C22orf29	HGNC	ENSG00000215012	tier1	-	-	33	0	0.00	10	15	60.00
NCOR2	0	genome.wustl.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	12	124824721	124824722	-	GCCGCTGCT	INS	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	in_frame_ins	c.5539_5538	p.1846in_frame_insSSG	1.000:0.999	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	tier1			NA	NA	NA	NA	NA	NA
DHX58	0	genome.wustl.edu	37	17	40259674	40259674	+	Silent	SNP	G	G	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	17	40259674	40259674	G	T	SNP	DHX58	ENST00000251642	human	ensembl	74_37	-1	known	silent	c.945	p.V315	0.638	superfamily_P-loop_NTPase	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX58	HGNC	ENSG00000108771	tier1	-	-	51	0	0.00	41	4	8.89
SHANK3	0	genome.wustl.edu	37	22	51121777	51121777	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	22	51121777	51121777	G	T	SNP	SHANK3	ENST00000262795	human	ensembl	74_37	+1	known	missense	c.895	p.A299S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322	tier1	-	-	33	0	0.00	40	4	9.09
FMO9P	0	genome.wustl.edu	37	1	166592934	166592934	+	RNA	SNP	G	G	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	1	166592934	166592934	G	T	SNP	FMO9P	ENST00000477875	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	FMO9P	HGNC	ENSG00000215834	tier1	-	-	35	0	0.00	18	3	14.29
ARHGAP5	0	genome.wustl.edu	37	14	32561316	32561316	+	Nonsense_Mutation	SNP	G	G	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	14	32561316	32561316	G	T	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	nonsense	c.1441	p.E481*	1.000	superfamily_FF_domain,smart_FF_domain	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	tier1	rs200628183	-	55	0	0.00	48	5	9.43
AMZ1	0	genome.wustl.edu	37	7	2741852	2741906	+	RNA	DEL	TGTGTGCTACTCTGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTC	TGTGTGCTACTCTGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTC	-			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	TGTGTGCTACTCTGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTC	TGTGTGCTACTCTGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	7	2741852	2741906	TGTGTGCTACTCTGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTC	-	DEL	AMZ1	ENST00000485540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.001:0.002:0.002:0.003:0.004:0.003:0.001:0.000:0.000:0.004:0.003:0.003:0.002:0.002:0.002:0.003:0.003:0.001:0.005:0.071:0.077:0.080:0.076:0.071:0.067:0.056:0.014:0.004:0.001:0.002:0.002:0.000:0.001:0.002:0.003:0.004:0.005:0.002:0.002:0.002:0.002:0.002:0.002:0.003:0.000:0.001:0.001:0.000:0.000:0.000:0.001:0.000:0.000	-	-	-	no_errors	AMZ1	HGNC	ENSG00000174945	tier1			NA	NA	NA	NA	NA	NA
PGM5P2	0	genome.wustl.edu	37	9	69113643	69113643	+	RNA	SNP	C	C	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	9	69113643	69113643	C	T	SNP	PGM5P2	ENST00000591037	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PGM5P2	HGNC	ENSG00000227558	tier1	-	-	118	0	0.00	60	65	52.00
MUC4	0	genome.wustl.edu	37	3	195516546	195516546	+	Silent	SNP	G	G	A			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	3	195516546	195516546	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.1905	p.S635	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	91	0	0.00	43	45	51.14
C19orf45	0	genome.wustl.edu	37	19	7572028	7572028	+	Splice_Site	SNP	G	G	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	19	7572028	7572028	G	T	SNP	C19orf45	ENST00000361664	human	ensembl	74_37	+1	known	splice_site	c.1293+1	e7+1	0.962	-	-	-	no_errors	C19orf45	HGNC	ENSG00000198723	tier1	-	-	48	0	0.00	44	4	8.33
TAF6L	0	genome.wustl.edu	37	11	62543260	62543260	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	11	62543260	62543260	C	T	SNP	TAF6L	ENST00000294168	human	ensembl	74_37	+1	known	missense	c.5	p.S2L	0.970	NULL	pfam_TAF_TATA-bd,pfam_DUF1546,superfamily_Histone-fold,smart_TAF_TATA-bd	-	no_errors	TAF6L	HGNC	ENSG00000162227	tier1	-	-	44	0	0.00	22	12	35.29
E2F4	0	genome.wustl.edu	37	16	67229794	67229796	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	16	67229794	67229796	CAG	-	DEL	E2F4	ENST00000379378	human	ensembl	74_37	+1	known	in_frame_del	c.918_920	p.S310in_frame_del	0.995:0.995:0.995	NULL	pfam_E2F_TDP	-	no_errors	E2F4	HGNC	ENSG00000205250	tier1			73	0	0.00	29	4	12.12
RTN3	0	genome.wustl.edu	37	11	63486877	63486877	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3NJ-01A-11D-A21Q-09	TCGA-FX-A3NJ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	408ed640-75f6-4346-bdd0-3b93c51adae5	5925ff29-ab11-4a35-957f-0e6198757944	11	63486877	63486877	G	T	SNP	RTN3	ENST00000377819	human	ensembl	74_37	+1	known	missense	c.903	p.E301D	0.998	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318	tier1	-	-	42	0	0.00	29	3	9.38
