Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ENSG00000221104	0	genome.wustl.edu	37	12	8519353	8519353	+	RNA	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	12	8519353	8519353	C	A	SNP	ENSG00000221104	ENST00000408177	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.342	-	-	-	no_errors	AC092865.1	Clone_based_ensembl_gene	ENSG00000221104	tier1	-	-	188	0	0.00	188	17	8.29
FAM120C	0	genome.wustl.edu	37	X	54160395	54160395	+	Silent	SNP	A	A	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	X	54160395	54160395	A	T	SNP	FAM120C	ENST00000375180	human	ensembl	74_37	-1	known	silent	c.1701	p.T567	0.075	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	tier1	-	-	54	0	0.00	45	19	29.69
NPBWR2	0	genome.wustl.edu	37	20	62737859	62737859	+	Missense_Mutation	SNP	T	T	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	20	62737859	62737859	T	G	SNP	NPBWR2	ENST00000369768	human	ensembl	74_37	-1	known	missense	c.326	p.Y109S	0.976	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	-	no_errors	NPBWR2	HGNC	ENSG00000125522	tier1	-	-	59	0	0.00	37	29	43.94
PMP22	0	genome.wustl.edu	37	17	15134197	15134197	+	Missense_Mutation	SNP	T	T	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	15134197	15134197	T	C	SNP	PMP22	ENST00000494511	human	ensembl	74_37	-1	novel	missense	c.341	p.H114R	0.000	NULL	NULL	-	no_errors	PMP22	HGNC	ENSG00000109099	tier1	-	-	26	0	0.00	34	6	15.00
TCHH	0	genome.wustl.edu	37	1	152080272	152080272	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	1	152080272	152080272	C	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.5421	p.R1807S	0.014	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450	tier1	-	-	80	0	0.00	59	14	19.18
MYBBP1A	0	genome.wustl.edu	37	17	4448396	4448396	+	Missense_Mutation	SNP	C	C	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	4448396	4448396	C	G	SNP	MYBBP1A	ENST00000381556	human	ensembl	74_37	-1	known	missense	c.2235	p.E745D	1.000	pfam_DNA_pol_V,superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382	tier1	-	-	56	0	0.00	61	10	14.08
FAM71F1	0	genome.wustl.edu	37	7	128356956	128356956	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	7	128356956	128356956	C	A	SNP	FAM71F1	ENST00000485070	human	ensembl	74_37	+1	putative	missense	c.103	p.P35T	0.988	NULL	pfam_DUF3699	-	no_errors	FAM71F1	HGNC	ENSG00000135248	tier1	-	-	24	0	0.00	37	18	32.73
DYTN	0	genome.wustl.edu	37	2	207564924	207564924	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	207564924	207564924	C	T	SNP	DYTN	ENST00000452335	human	ensembl	74_37	-1	known	missense	c.500	p.G167E	0.959	pfam_EF-hand_dom_typ2	pfam_EF-hand_dom_typ2,pfam_EF-hand_dom_typ1,pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	DYTN	HGNC	ENSG00000232125	tier1	-	-	23	0	0.00	11	6	35.29
LRP2	0	genome.wustl.edu	37	2	170089920	170089920	+	Splice_Site	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	170089920	170089920	C	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	splice_site	c.5098+1	e30+1	0.966	-	-	-	no_errors	LRP2	HGNC	ENSG00000081479	tier1	-	-	80	0	0.00	58	8	12.12
CACNA1G	0	genome.wustl.edu	37	17	48703577	48703577	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	48703577	48703577	C	A	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.6599	p.P2200Q	0.001	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	tier1	-	-	75	0	0.00	85	17	16.67
TCEB3CL	0	genome.wustl.edu	37	18	44549187	44549187	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	18	44549187	44549187	G	A	SNP	TCEB3CL	ENST00000451265	human	ensembl	74_37	-1	known	missense	c.1112	p.T371M	0.212	pfam_RNA_pol_II_trans_fac_SIII_A	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3CL	HGNC	ENSG00000234298	tier1	-	-	160	0	0.00	115	12	9.45
HERC2	0	genome.wustl.edu	37	15	28380807	28380807	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	15	28380807	28380807	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.12047	p.R4016K	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	tier1	-	-	22	0	0.00	29	6	17.14
WIPF1	0	genome.wustl.edu	37	2	175436734	175436734	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	175436734	175436734	G	T	SNP	WIPF1	ENST00000272746	human	ensembl	74_37	-1	known	missense	c.799	p.P267T	0.764	NULL	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF1	HGNC	ENSG00000115935	tier1	-	-	45	0	0.00	40	9	18.37
SP140	0	genome.wustl.edu	37	2	231152614	231152614	+	Silent	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	231152614	231152614	G	A	SNP	SP140	ENST00000392045	human	ensembl	74_37	+1	known	silent	c.1653	p.K551	0.004	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263	tier1	-	-	27	0	0.00	22	15	40.54
BET1	0	genome.wustl.edu	37	7	93605309	93605309	+	Silent	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	7	93605309	93605309	C	T	SNP	BET1	ENST00000357520	human	ensembl	74_37	-1	known	silent	c.339	p.R113	0.002	NULL	pfam_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	BET1	HGNC	ENSG00000105829	tier1	-	-	38	0	0.00	43	25	36.76
SYMPK	0	genome.wustl.edu	37	19	46351034	46351034	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	19	46351034	46351034	G	A	SNP	SYMPK	ENST00000245934	human	ensembl	74_37	-1	known	missense	c.652	p.R218C	0.963	pfam_DUF3453,superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	tier1	-	-	42	0	0.00	38	13	25.49
ENSG00000226738	0	genome.wustl.edu	37	22	50986016	50986016	+	RNA	SNP	T	T	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	22	50986016	50986016	T	A	SNP	ENSG00000226738	ENST00000434237	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	CTA-384D8.31	Clone_based_vega_gene	ENSG00000226738	tier1	-	-	31	0	0.00	12	4	25.00
USP6	0	genome.wustl.edu	37	17	5041559	5041559	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	5041559	5041559	C	T	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	missense	c.1069	p.P357S	1.000	NULL	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204	tier1	-	-	171	0	0.00	171	24	12.31
HSPG2	0	genome.wustl.edu	37	1	22203080	22203080	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	1	22203080	22203080	G	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.2751	p.N917K	1.000	pfam_EGF_laminin,smart_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798	tier1	-	-	56	0	0.00	32	4	11.11
SCN9A	0	genome.wustl.edu	37	2	167159809	167159809	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	167159809	167159809	A	G	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.695	p.L232P	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	tier1	-	-	28	0	0.00	15	8	34.78
FRG1B	0	genome.wustl.edu	37	20	29624093	29624093	+	Splice_Site	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	20	29624093	29624093	G	T	SNP	FRG1B	ENST00000278882	human	ensembl	74_37	+1	known	splice_site	c.116+1	e2+1	1.000	-	-	-	no_errors	FRG1B	HGNC	ENSG00000149531	tier1	rs75468660	-	52	0	0.00	57	8	12.31
ADCY2	0	genome.wustl.edu	37	5	7820784	7820784	+	Silent	SNP	A	A	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	5	7820784	7820784	A	C	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	silent	c.3105	p.G1035	0.741	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	tier1	-	-	47	0	0.00	28	10	26.32
FABP5P3	0	genome.wustl.edu	37	7	152140121	152140121	+	RNA	DEL	T	T	-			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	7	152140121	152140121	T	-	DEL	FABP5P3	ENST00000477993	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.764	-	-	-	no_errors	FABP5P3	HGNC	ENSG00000241735	tier1			13	0	0.00	11	3	21.43
BIRC6	0	genome.wustl.edu	37	2	32605333	32605333	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	32605333	32605333	C	T	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.620	p.T207I	1.000	superfamily_WD40_repeat_dom	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	tier1	-	-	28	0	0.00	24	5	17.24
CPSF1	0	genome.wustl.edu	37	8	145621845	145621845	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	8	145621845	145621845	G	A	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.2794	p.R932C	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	tier1	-	-	24	0	0.00	5	15	75.00
GLE1	0	genome.wustl.edu	37	9	131296042	131296042	+	Silent	SNP	A	A	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	9	131296042	131296042	A	G	SNP	GLE1	ENST00000309971	human	ensembl	74_37	+1	known	silent	c.1458	p.K486	1.000	pfam_GLE1	pfam_GLE1	-	no_errors	GLE1	HGNC	ENSG00000119392	tier1	-	-	62	0	0.00	59	6	9.23
P2RX3	0	genome.wustl.edu	37	11	57135558	57135558	+	Silent	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	11	57135558	57135558	C	T	SNP	P2RX3	ENST00000263314	human	ensembl	74_37	+1	known	silent	c.918	p.D306	0.782	pfam_P2X_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X3_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX3	HGNC	ENSG00000109991	tier1	-	-	35	0	0.00	16	12	42.86
GPR98	0	genome.wustl.edu	37	5	89968475	89968475	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	5	89968475	89968475	A	G	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.4865	p.Y1622C	1.000	pfam_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	tier1	-	-	48	0	0.00	36	8	18.18
MUC7	0	genome.wustl.edu	37	4	71346984	71346984	+	Missense_Mutation	SNP	A	A	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	4	71346984	71346984	A	T	SNP	MUC7	ENST00000304887	human	ensembl	74_37	+1	known	missense	c.523	p.T175S	0.000	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195	tier1	-	-	137	0	0.00	102	28	21.54
BRINP3	0	genome.wustl.edu	37	1	190067919	190067919	+	Silent	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	1	190067919	190067919	G	T	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	silent	c.1530	p.V510	0.998	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670	tier1	-	-	35	0	0.00	35	7	16.67
BRINP3	0	genome.wustl.edu	37	1	190067918	190067918	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	1	190067918	190067918	G	T	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.1531	p.H511N	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670	tier1	-	-	37	0	0.00	36	7	16.28
STK11IP	0	genome.wustl.edu	37	2	220473312	220473312	+	Silent	SNP	C	C	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	220473312	220473312	C	G	SNP	STK11IP	ENST00000456909	human	ensembl	74_37	+1	novel	silent	c.1611	p.L537	0.986	NULL	NULL	-	no_errors	STK11IP	HGNC	ENSG00000144589	tier1	-	-	45	0	0.00	32	6	15.79
ENSG00000259037	0	genome.wustl.edu	37	14	105055650	105055650	+	RNA	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	14	105055650	105055650	C	T	SNP	ENSG00000259037	ENST00000556073	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-614O9.1	Clone_based_vega_gene	ENSG00000259037	tier1	-	-	27	0	0.00	27	7	20.59
ITGA2B	0	genome.wustl.edu	37	17	42461715	42461715	+	Silent	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	42461715	42461715	G	A	SNP	ITGA2B	ENST00000262407	human	ensembl	74_37	-1	known	silent	c.855	p.V285	0.080	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961	tier1	-	-	47	0	0.00	41	25	37.88
FAM135B	0	genome.wustl.edu	37	8	139164708	139164708	+	Silent	SNP	T	T	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	8	139164708	139164708	T	A	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	silent	c.2010	p.S670	0.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	tier1	-	-	45	0	0.00	36	10	21.28
KRT76	0	genome.wustl.edu	37	12	53164948	53164948	+	Missense_Mutation	SNP	A	A	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	12	53164948	53164948	A	T	SNP	KRT76	ENST00000332411	human	ensembl	74_37	-1	known	missense	c.1319	p.L440H	1.000	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT76	HGNC	ENSG00000185069	tier1	-	-	74	0	0.00	63	19	23.17
C19orf57	0	genome.wustl.edu	37	19	14000757	14000757	+	Silent	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	19	14000757	14000757	C	T	SNP	C19orf57	ENST00000454313	human	ensembl	74_37	-1	known	silent	c.912	p.V304	0.000	NULL	NULL	-	no_errors	C19orf57	HGNC	ENSG00000132016	tier1	rs139071536	GMAF=0.0005	47	0	0.00	57	18	24.00
MCM9	0	genome.wustl.edu	37	6	119137161	119137161	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	6	119137161	119137161	C	T	SNP	MCM9	ENST00000316316	human	ensembl	74_37	-1	known	missense	c.2258	p.S753N	0.000	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,prints_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	-	no_errors	MCM9	HGNC	ENSG00000111877	tier1	-	-	38	0	0.00	42	6	12.50
INF2	0	genome.wustl.edu	37	14	105178793	105178793	+	Nonsense_Mutation	SNP	C	C	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	14	105178793	105178793	C	G	SNP	INF2	ENST00000392634	human	ensembl	74_37	+1	known	nonsense	c.2513	p.S838*	0.120	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_WH2_dom,superfamily_ARM-type_fold,smart_FH2_Formin,pfscan_WH2_dom	-	no_errors	INF2	HGNC	ENSG00000203485	tier1	-	-	77	0	0.00	42	34	44.74
ENSG00000242111	0	genome.wustl.edu	37	9	107038454	107038454	+	RNA	SNP	T	T	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	9	107038454	107038454	T	A	SNP	ENSG00000242111	ENST00000493279	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.043	-	-	-	no_errors	RP11-86L19.2	Clone_based_vega_gene	ENSG00000242111	tier1	-	-	22	0	0.00	15	11	42.31
PM20D1	0	genome.wustl.edu	37	1	205814604	205814604	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	1	205814604	205814604	G	A	SNP	PM20D1	ENST00000367136	human	ensembl	74_37	-1	known	missense	c.338	p.S113L	0.998	NULL	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors	PM20D1	HGNC	ENSG00000162877	tier1	rs189235498	GMAF=0.0005	58	0	0.00	37	12	24.49
SPHKAP	0	genome.wustl.edu	37	2	228884539	228884539	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	228884539	228884539	G	T	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.1031	p.A344D	0.016	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	tier1	-	-	55	0	0.00	44	9	16.98
BOD1L1	0	genome.wustl.edu	37	4	13602177	13602177	+	Missense_Mutation	SNP	T	T	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	4	13602177	13602177	T	A	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.6347	p.E2116V	0.987	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219	tier1	-	-	40	0	0.00	27	16	37.21
DNAJC22	0	genome.wustl.edu	37	12	49745369	49745369	+	RNA	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	12	49745369	49745369	C	T	SNP	DNAJC22	ENST00000552651	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNAJC22	HGNC	ENSG00000178401	tier1	-	-	19	0	0.00	11	5	31.25
CTSE	0	genome.wustl.edu	37	1	206327499	206327499	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	1	206327499	206327499	G	A	SNP	CTSE	ENST00000361052	human	ensembl	74_37	+1	known	missense	c.703	p.E235K	0.997	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	CTSE	HGNC	ENSG00000196188	tier1	-	-	99	0	0.00	63	27	30.00
TMEM2	0	genome.wustl.edu	37	9	74319671	74319671	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	9	74319671	74319671	G	A	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	nonsense	c.3034	p.R1012*	0.995	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048	tier1	-	-	41	0	0.00	28	7	20.00
CPXCR1	0	genome.wustl.edu	37	X	88009153	88009153	+	Silent	SNP	T	T	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	X	88009153	88009153	T	C	SNP	CPXCR1	ENST00000276127	human	ensembl	74_37	+1	known	silent	c.738	p.S246	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	CPXCR1	HGNC	ENSG00000147183	tier1	-	-	112	0	0.00	52	11	17.46
C3AR1	0	genome.wustl.edu	37	12	8211888	8211888	+	Silent	SNP	A	A	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	12	8211888	8211888	A	G	SNP	C3AR1	ENST00000307637	human	ensembl	74_37	-1	known	silent	c.894	p.P298	0.000	pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Anaphtx_C3AR1,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Formyl_pep_rcpt,prints_Anaphtx_C5AR1/C5AR2	-	no_errors	C3AR1	HGNC	ENSG00000171860	tier1	-	-	24	0	0.00	22	6	21.43
TRIM66	0	genome.wustl.edu	37	11	8665970	8665970	+	RNA	SNP	T	T	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	11	8665970	8665970	T	C	SNP	TRIM66	ENST00000531498	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.871	-	-	-	no_errors	TRIM66	HGNC	ENSG00000166436	tier1	-	-	24	0	0.00	16	6	27.27
CTNND2	0	genome.wustl.edu	37	5	11236855	11236855	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	5	11236855	11236855	G	A	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.1709	p.A570V	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	tier1	-	-	44	0	0.00	36	9	19.57
CHST12	0	genome.wustl.edu	37	7	2473042	2473042	+	Silent	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	7	2473042	2473042	C	A	SNP	CHST12	ENST00000258711	human	ensembl	74_37	+1	known	silent	c.768	p.R256	1.000	pfam_Sulfotransferase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	CHST12	HGNC	ENSG00000136213	tier1	-	-	34	0	0.00	42	20	32.26
ZNF416	0	genome.wustl.edu	37	19	58084054	58084054	+	Silent	SNP	T	T	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	19	58084054	58084054	T	C	SNP	ZNF416	ENST00000196489	human	ensembl	74_37	-1	known	silent	c.1218	p.T406	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF416	HGNC	ENSG00000083817	tier1	-	-	58	0	0.00	71	10	12.35
ACAN	0	genome.wustl.edu	37	15	89402172	89402172	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	15	89402172	89402172	C	T	SNP	ACAN	ENST00000439576	human	ensembl	74_37	+1	known	missense	c.6356	p.A2119V	0.043	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766	tier1	-	-	27	0	0.00	18	18	50.00
ARFGEF1	0	genome.wustl.edu	37	8	68179642	68179642	+	Missense_Mutation	SNP	T	T	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	8	68179642	68179642	T	G	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	missense	c.1608	p.E536D	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	tier1	-	-	33	0	0.00	14	16	53.33
KCNA1	0	genome.wustl.edu	37	12	5021875	5021875	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	12	5021875	5021875	G	A	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	missense	c.1331	p.R444H	1.000	prints_K_chnl_volt-dep_Kv1.1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	tier1	-	-	28	0	0.00	9	15	62.50
UNC13C	0	genome.wustl.edu	37	15	54590064	54590064	+	Silent	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	15	54590064	54590064	G	A	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	silent	c.4044	p.V1348	1.000	superfamily_C2_dom	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	tier1	-	-	17	0	0.00	11	8	42.11
PCLO	0	genome.wustl.edu	37	7	82545573	82545573	+	Missense_Mutation	SNP	T	T	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	7	82545573	82545573	T	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.11729	p.E3910V	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	tier1	-	-	147	0	0.00	149	93	38.43
TMEM106B	0	genome.wustl.edu	37	7	12271553	12271553	+	Silent	SNP	T	T	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	7	12271553	12271553	T	C	SNP	TMEM106B	ENST00000396667	human	ensembl	74_37	+1	known	silent	c.777	p.Y259	0.982	NULL	pfam_DUF1356_TMEM106	-	no_errors	TMEM106B	HGNC	ENSG00000106460	tier1	rs151183990	GMAF=0.0005	30	0	0.00	20	12	37.50
TUBGCP3	0	genome.wustl.edu	37	13	113213664	113213664	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	13	113213664	113213664	C	T	SNP	TUBGCP3	ENST00000261965	human	ensembl	74_37	-1	known	missense	c.302	p.S101N	1.000	NULL	pfam_TUBGCP	-	no_errors	TUBGCP3	HGNC	ENSG00000126216	tier1	-	-	51	0	0.00	18	14	43.75
C1orf65	0	genome.wustl.edu	37	1	223568250	223568250	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	1	223568250	223568250	C	T	SNP	C1orf65	ENST00000366875	human	ensembl	74_37	+1	known	missense	c.1433	p.A478V	0.997	NULL	NULL	-	no_errors	C1orf65	HGNC	ENSG00000178395	tier1	-	-	17	0	0.00	14	12	46.15
UNC13C	0	genome.wustl.edu	37	15	54590065	54590065	+	Nonsense_Mutation	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	15	54590065	54590065	G	T	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	nonsense	c.4045	p.E1349*	1.000	superfamily_C2_dom	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	tier1	-	-	16	0	0.00	10	8	44.44
MALAT1	0	genome.wustl.edu	37	11	65273644	65273648	+	RNA	DEL	CTTTG	CTTTG	-			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	CTTTG	CTTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	11	65273644	65273648	CTTTG	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	tier1			NA	NA	NA	NA	NA	NA
PCMTD2	0	genome.wustl.edu	37	20	62905090	62905091	+	RNA	INS	-	-	TTC			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	20	62905090	62905091	-	TTC	INS	PCMTD2	ENST00000266078	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PCMTD2	HGNC	ENSG00000203880	tier1			9	0	0.00	6	6	50.00
MYH2	0	genome.wustl.edu	37	17	10443920	10443921	+	Frame_Shift_Ins	INS	-	-	TG			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	10443920	10443921	-	TG	INS	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	frame_shift_ins	c.999_998	p.M333fs	0.990:1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	tier1			50	0	0.00	51	7	12.07
LRRC17	0	genome.wustl.edu	37	7	102584860	102584860	+	Missense_Mutation	SNP	T	T	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	7	102584860	102584860	T	G	SNP	LRRC17	ENST00000339431	human	ensembl	74_37	+1	known	missense	c.1132	p.C378G	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC17	HGNC	ENSG00000128606	tier1	-	-	43	0	0.00	35	30	46.15
PRX	0	genome.wustl.edu	37	19	40900053	40900053	+	Silent	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	19	40900053	40900053	G	T	SNP	PRX	ENST00000324001	human	ensembl	74_37	-1	known	silent	c.4206	p.P1402	0.258	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	tier1	-	-	54	0	0.00	37	5	11.90
TENM1	0	genome.wustl.edu	37	X	123518624	123518624	+	Missense_Mutation	SNP	A	A	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	X	123518624	123518624	A	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.6157	p.F2053I	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694	tier1	-	-	74	0	0.00	49	11	18.33
RBBP7	0	genome.wustl.edu	37	X	16875794	16875794	+	Missense_Mutation	SNP	C	C	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	X	16875794	16875794	C	G	SNP	RBBP7	ENST00000380087	human	ensembl	74_37	-1	known	missense	c.520	p.G174R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Histone-bd_RBBP4_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RBBP7	HGNC	ENSG00000102054	tier1	-	-	60	0	0.00	48	5	9.43
NDST4	0	genome.wustl.edu	37	4	115792054	115792054	+	Nonsense_Mutation	SNP	A	A	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	4	115792054	115792054	A	T	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	nonsense	c.1589	p.L530*	0.536	NULL	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653	tier1	-	-	27	0	0.00	17	7	29.17
SIGLEC7	0	genome.wustl.edu	37	19	51649285	51649285	+	Silent	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	19	51649285	51649285	C	T	SNP	SIGLEC7	ENST00000317643	human	ensembl	74_37	+1	known	silent	c.934	p.L312	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC7	HGNC	ENSG00000168995	tier1	-	-	60	0	0.00	56	16	22.22
CRAT	0	genome.wustl.edu	37	9	131862186	131862186	+	Silent	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	9	131862186	131862186	C	T	SNP	CRAT	ENST00000318080	human	ensembl	74_37	-1	known	silent	c.1044	p.G348	0.275	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321	tier1	-	-	49	0	0.00	49	6	10.91
WFS1	0	genome.wustl.edu	37	4	6293088	6293088	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	4	6293088	6293088	G	A	SNP	WFS1	ENST00000226760	human	ensembl	74_37	+1	known	missense	c.625	p.E209K	0.977	NULL	NULL	-	no_errors	WFS1	HGNC	ENSG00000109501	tier1	-	-	29	0	0.00	19	6	24.00
PHACTR2	0	genome.wustl.edu	37	6	144104390	144104390	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	6	144104390	144104390	G	A	SNP	PHACTR2	ENST00000440869	human	ensembl	74_37	+1	known	missense	c.1680	p.M560I	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419	tier1	-	-	24	0	0.00	17	7	29.17
NFIB	0	genome.wustl.edu	37	9	14120501	14120501	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	9	14120501	14120501	G	A	SNP	NFIB	ENST00000397581	human	ensembl	74_37	-1	known	missense	c.1183	p.P395S	1.000	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIB	HGNC	ENSG00000147862	tier1	-	-	108	0	0.00	39	29	42.65
GRIPAP1	0	genome.wustl.edu	37	X	48832524	48832524	+	Splice_Site	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	X	48832524	48832524	C	T	SNP	GRIPAP1	ENST00000376441	human	ensembl	74_37	-1	known	splice_site	c.2185-1	e24-1	1.000	-	-	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	tier1	-	-	46	0	0.00	50	8	13.79
DNAH8	0	genome.wustl.edu	37	6	38746237	38746237	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	6	38746237	38746237	A	G	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.1385	p.Q462R	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	tier1	-	-	39	0	0.00	34	8	19.05
DDX60	0	genome.wustl.edu	37	4	169227760	169227760	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	4	169227760	169227760	A	G	SNP	DDX60	ENST00000393743	human	ensembl	74_37	-1	known	missense	c.376	p.C126R	0.990	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628	tier1	-	-	29	0	0.00	40	4	9.09
SASH1	0	genome.wustl.edu	37	6	148869496	148869496	+	Silent	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	6	148869496	148869496	G	T	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	silent	c.3546	p.V1182	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961	tier1	-	-	48	0	0.00	25	16	39.02
TC2N	0	genome.wustl.edu	37	14	92278695	92278695	+	Missense_Mutation	SNP	T	T	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	14	92278695	92278695	T	C	SNP	TC2N	ENST00000340892	human	ensembl	74_37	-1	known	missense	c.262	p.R88G	0.954	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	TC2N	HGNC	ENSG00000165929	tier1	-	-	65	0	0.00	41	10	19.61
PELP1	0	genome.wustl.edu	37	17	4578833	4578833	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	4578833	4578833	G	A	SNP	PELP1	ENST00000301396	human	ensembl	74_37	-1	known	missense	c.1325	p.T442I	0.001	NULL	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456	tier1	-	-	57	0	0.00	68	6	8.11
TNPO1	0	genome.wustl.edu	37	5	72178316	72178316	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	5	72178316	72178316	G	T	SNP	TNPO1	ENST00000337273	human	ensembl	74_37	+1	known	missense	c.943	p.G315C	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312	tier1	-	-	53	0	0.00	40	6	13.04
XIRP2	0	genome.wustl.edu	37	2	168099842	168099842	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	168099842	168099842	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.1940	p.A647V	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092	tier1	-	-	41	0	0.00	30	5	14.29
CSF1R	0	genome.wustl.edu	37	5	149450109	149450109	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	5	149450109	149450109	G	A	SNP	CSF1R	ENST00000286301	human	ensembl	74_37	-1	known	missense	c.1108	p.R370C	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	CSF1R	HGNC	ENSG00000182578	tier1	-	-	62	0	0.00	47	20	29.41
XIRP2	0	genome.wustl.edu	37	2	168099850	168099850	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	168099850	168099850	G	T	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.1948	p.D650Y	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092	tier1	-	-	41	0	0.00	27	5	15.62
DOCK6	0	genome.wustl.edu	37	19	11354335	11354335	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	19	11354335	11354335	G	A	SNP	DOCK6	ENST00000294618	human	ensembl	74_37	-1	known	missense	c.1156	p.R386C	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N	-	no_errors	DOCK6	HGNC	ENSG00000130158	tier1	-	-	19	0	0.00	30	6	16.67
SERINC4	0	genome.wustl.edu	37	15	44088358	44088358	+	Missense_Mutation	SNP	A	A	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	15	44088358	44088358	A	T	SNP	SERINC4	ENST00000249714	human	ensembl	74_37	-1	known	missense	c.403	p.F135I	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC4	HGNC	ENSG00000184716	tier1	-	-	49	0	0.00	36	15	29.41
RBM22	0	genome.wustl.edu	37	5	150078185	150078185	+	Frame_Shift_Del	DEL	G	G	-			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	5	150078185	150078185	G	-	DEL	RBM22	ENST00000199814	human	ensembl	74_37	-1	known	frame_shift_del	c.147	p.R50fs	1.000	superfamily_Znf_CCHC	pfam_RRM_dom,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM22	HGNC	ENSG00000086589	tier1			37	0	0.00	29	5	14.71
PHF3	0	genome.wustl.edu	37	6	64422019	64422019	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	6	64422019	64422019	A	G	SNP	PHF3	ENST00000262043	human	ensembl	74_37	+1	known	missense	c.4535	p.N1512S	0.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	tier1	-	-	28	0	0.00	22	6	21.43
SERPINB3	0	genome.wustl.edu	37	18	61328304	61328304	+	Silent	SNP	A	A	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	18	61328304	61328304	A	C	SNP	SERPINB3	ENST00000283752	human	ensembl	74_37	-1	known	silent	c.147	p.T49	0.970	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB3	HGNC	ENSG00000057149	tier1	-	-	128	0	0.00	78	47	37.60
CLDN1	0	genome.wustl.edu	37	3	190027980	190027980	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	3	190027980	190027980	G	T	SNP	CLDN1	ENST00000295522	human	ensembl	74_37	-1	known	missense	c.451	p.P151T	0.999	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin1,prints_Claudin14	-	no_errors	CLDN1	HGNC	ENSG00000163347	tier1	-	-	38	0	0.00	36	11	23.40
MTMR3	0	genome.wustl.edu	37	22	30387566	30387566	+	Nonsense_Mutation	SNP	A	A	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	22	30387566	30387566	A	T	SNP	MTMR3	ENST00000401950	human	ensembl	74_37	+1	known	nonsense	c.367	p.K123*	1.000	NULL	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330	tier1	-	-	56	0	0.00	33	5	13.16
GABRR1	0	genome.wustl.edu	37	6	89890035	89890035	+	Missense_Mutation	SNP	C	C	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	6	89890035	89890035	C	G	SNP	GABRR1	ENST00000454853	human	ensembl	74_37	-1	known	missense	c.1122	p.R374S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho1_rcpt,prints_Neur_channel,prints_GABAAa_rho_rcpt,tigrfam_Neur_channel	-	no_errors	GABRR1	HGNC	ENSG00000146276	tier1	-	-	63	0	0.00	61	15	19.74
ANKRD20A11P	0	genome.wustl.edu	37	21	15304557	15304557	+	RNA	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	21	15304557	15304557	C	A	SNP	ANKRD20A11P	ENST00000442192	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.156	-	-	-	no_errors	ANKRD20A11P	HGNC	ENSG00000215559	tier1	-	-	107	0	0.00	53	20	27.40
SREK1	0	genome.wustl.edu	37	5	65475111	65475111	+	RNA	SNP	A	A	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	5	65475111	65475111	A	C	SNP	SREK1	ENST00000284041	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	SREK1	HGNC	ENSG00000153914	tier1	-	-	39	0	0.00	31	16	34.04
ENSG00000272268	0	genome.wustl.edu	37	2	6112272	6112272	+	Silent	SNP	T	T	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	6112272	6112272	T	A	SNP	ENSG00000272268	ENST00000391666	human	ensembl	74_37	+1	known	silent	c.216	p.S72	0.003	NULL	NULL	-	no_errors	FLJ30594	Uniprot_gn	ENSG00000272268	tier1	-	-	45	0	0.00	39	11	22.00
GDI1	0	genome.wustl.edu	37	X	153668462	153668462	+	Missense_Mutation	SNP	C	C	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	X	153668462	153668462	C	G	SNP	GDI1	ENST00000447750	human	ensembl	74_37	+1	known	missense	c.563	p.A188G	1.000	pfam_GDP_dissociation_inhibitor,prints_RabGDI	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI1	HGNC	ENSG00000203879	tier1	-	-	57	0	0.00	38	9	19.15
LAMTOR4	0	genome.wustl.edu	37	7	99746558	99746558	+	RNA	SNP	C	C	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	7	99746558	99746558	C	G	SNP	LAMTOR4	ENST00000460732	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	LAMTOR4	HGNC	ENSG00000188186	tier1	-	-	92	0	0.00	81	61	42.96
HTT	0	genome.wustl.edu	37	4	3237472	3237472	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	4	3237472	3237472	G	C	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	missense	c.8752	p.A2918P	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	tier1	-	-	22	0	0.00	13	4	23.53
MPV17	0	genome.wustl.edu	37	2	27535900	27535900	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	27535900	27535900	G	A	SNP	MPV17	ENST00000426513	human	ensembl	74_37	-1	known	missense	c.112	p.P38S	0.993	NULL	NULL	-	no_errors	MPV17	HGNC	ENSG00000115204	tier1	-	-	28	0	0.00	29	4	11.76
SMYD4	0	genome.wustl.edu	37	17	1686394	1686394	+	Silent	SNP	G	G	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	1686394	1686394	G	C	SNP	SMYD4	ENST00000305513	human	ensembl	74_37	-1	known	silent	c.2196	p.R732	0.989	NULL	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532	tier1	-	-	36	0	0.00	31	6	16.22
CNGA3	0	genome.wustl.edu	37	2	99013672	99013672	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	99013672	99013672	G	C	SNP	CNGA3	ENST00000272602	human	ensembl	74_37	+1	known	missense	c.2039	p.G680A	0.000	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191	tier1	-	-	17	0	0.00	10	4	28.57
MYH1	0	genome.wustl.edu	37	17	10404994	10404994	+	Missense_Mutation	SNP	A	A	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	10404994	10404994	A	T	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	missense	c.3265	p.F1089I	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	tier1	-	-	35	0	0.00	65	14	17.72
COL20A1	0	genome.wustl.edu	37	20	61956638	61956638	+	Silent	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	20	61956638	61956638	C	A	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	silent	c.3312	p.P1104	0.855	pfam_Collagen	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	tier1	-	-	26	0	0.00	11	8	42.11
NPAS3	0	genome.wustl.edu	37	14	34243561	34243561	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	14	34243561	34243561	C	T	SNP	NPAS3	ENST00000356141	human	ensembl	74_37	+1	known	missense	c.871	p.R291W	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS3	HGNC	ENSG00000151322	tier1	-	-	55	0	0.00	37	10	20.41
PTPRH	0	genome.wustl.edu	37	19	55711640	55711640	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	19	55711640	55711640	C	A	SNP	PTPRH	ENST00000376350	human	ensembl	74_37	-1	known	missense	c.1384	p.A462S	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031	tier1	-	-	98	0	0.00	86	18	17.31
CNTD1	0	genome.wustl.edu	37	17	40962300	40962300	+	RNA	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	40962300	40962300	G	A	SNP	CNTD1	ENST00000315066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	CNTD1	HGNC	ENSG00000176563	tier1	-	-	26	0	0.00	28	8	22.22
KDM3B	0	genome.wustl.edu	37	5	137756482	137756482	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	5	137756482	137756482	C	T	SNP	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	missense	c.3803	p.P1268L	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733	tier1	-	-	34	0	0.00	50	7	12.28
C5	0	genome.wustl.edu	37	9	123722535	123722535	+	Missense_Mutation	SNP	T	T	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	9	123722535	123722535	T	A	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	missense	c.4669	p.I1557F	1.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804	tier1	-	-	38	0	0.00	16	7	30.43
ARAP2	0	genome.wustl.edu	37	4	36166640	36166640	+	Missense_Mutation	SNP	T	T	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	4	36166640	36166640	T	C	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	missense	c.2069	p.K690R	1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	tier1	-	-	33	0	0.00	39	8	17.02
DNM1P47	0	genome.wustl.edu	37	15	102291831	102291831	+	RNA	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	15	102291831	102291831	C	A	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	-	-	209	0	0.00	208	29	12.24
GPC4	0	genome.wustl.edu	37	X	132458181	132458181	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	X	132458181	132458181	C	A	SNP	GPC4	ENST00000370828	human	ensembl	74_37	-1	known	missense	c.703	p.V235F	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC4	HGNC	ENSG00000076716	tier1	-	-	26	0	0.00	20	4	16.67
GPR128	0	genome.wustl.edu	37	3	100356177	100356177	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	3	100356177	100356177	A	G	SNP	GPR128	ENST00000273352	human	ensembl	74_37	+1	known	missense	c.629	p.Q210R	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820	tier1	-	-	39	0	0.00	33	4	10.81
PITPNM3	0	genome.wustl.edu	37	17	6367059	6367059	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	6367059	6367059	C	A	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	missense	c.2299	p.V767F	1.000	pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622	tier1	-	-	42	0	0.00	48	20	29.41
PEG3	0	genome.wustl.edu	37	19	57333112	57333112	+	Silent	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	19	57333112	57333112	C	T	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	silent	c.576	p.P192	0.038	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	tier1	-	-	42	0	0.00	31	9	22.50
TMEM132C	0	genome.wustl.edu	37	12	129190514	129190514	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	12	129190514	129190514	G	A	SNP	TMEM132C	ENST00000435159	human	ensembl	74_37	+1	known	missense	c.3001	p.G1001R	0.996	NULL	NULL	-	no_errors	TMEM132C	HGNC	ENSG00000181234	tier1	-	-	52	0	0.00	41	20	32.79
ANK3	0	genome.wustl.edu	37	10	61932115	61932115	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	10	61932115	61932115	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.2429	p.S810L	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	tier1	-	-	41	0	0.00	9	19	67.86
EML5	0	genome.wustl.edu	37	14	89202895	89202895	+	Missense_Mutation	SNP	T	T	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	14	89202895	89202895	T	A	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	missense	c.862	p.S288C	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	tier1	-	-	36	0	0.00	20	6	22.22
PCDHB4	0	genome.wustl.edu	37	5	140502563	140502563	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	5	140502563	140502563	G	T	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	missense	c.983	p.G328V	0.879	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818	tier1	-	-	15	0	0.00	14	5	26.32
TMEM99	0	genome.wustl.edu	37	17	38991131	38991131	+	Silent	SNP	T	T	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	38991131	38991131	T	C	SNP	TMEM99	ENST00000301665	human	ensembl	74_37	+1	known	silent	c.363	p.H121	0.073	NULL	NULL	-	no_errors	TMEM99	HGNC	ENSG00000167920	tier1	-	-	42	0	0.00	27	8	22.86
ENSG00000226145	0	genome.wustl.edu	37	17	16725652	16725652	+	RNA	SNP	A	A	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	16725652	16725652	A	T	SNP	ENSG00000226145	ENST00000417510	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.778	-	-	-	no_errors	AC022596.6	Clone_based_vega_gene	ENSG00000226145	tier1	-	-	180	0	0.00	386	46	10.60
RIOK2	0	genome.wustl.edu	37	5	96512975	96512975	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	5	96512975	96512975	C	T	SNP	RIOK2	ENST00000283109	human	ensembl	74_37	-1	known	missense	c.343	p.E115K	1.000	pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase	pfam_RIO-like_kinase,pfam_RIO2_kinase_winged_hlx_N,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase	-	no_errors	RIOK2	HGNC	ENSG00000058729	tier1	-	-	39	0	0.00	20	13	39.39
AGTR2	0	genome.wustl.edu	37	X	115303840	115303840	+	Missense_Mutation	SNP	T	T	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	X	115303840	115303840	T	A	SNP	AGTR2	ENST00000371906	human	ensembl	74_37	+1	known	missense	c.307	p.Y103N	0.986	pfam_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Brdyknn_rcpt,prints_Chemokine_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_ATII_AT2_rcpt,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Brdyknn_rcpt,prints_Chemokine_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	AGTR2	HGNC	ENSG00000180772	tier1	-	-	57	0	0.00	22	10	31.25
TENM1	0	genome.wustl.edu	37	X	123780640	123780640	+	Missense_Mutation	SNP	T	T	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	X	123780640	123780640	T	A	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.1600	p.T534S	0.997	pfam_EGF_extracell,smart_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694	tier1	-	-	35	0	0.00	22	13	37.14
IRS1	0	genome.wustl.edu	37	2	227660538	227660538	+	Missense_Mutation	SNP	C	C	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	227660538	227660538	C	G	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	missense	c.2917	p.A973P	0.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047	tier1	-	-	28	0	0.00	35	7	16.67
PRSS35	0	genome.wustl.edu	37	6	84234250	84234250	+	Missense_Mutation	SNP	C	C	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	6	84234250	84234250	C	G	SNP	PRSS35	ENST00000369700	human	ensembl	74_37	+1	known	missense	c.1090	p.R364G	1.000	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	PRSS35	HGNC	ENSG00000146250	tier1	-	-	26	0	0.00	13	8	38.10
MUS81	0	genome.wustl.edu	37	11	65633285	65633285	+	Silent	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	11	65633285	65633285	C	T	SNP	MUS81	ENST00000308110	human	ensembl	74_37	+1	known	silent	c.1509	p.L503	0.966	NULL	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_DNA_pol_b-like_N,smart_ERCC4_domain	-	no_errors	MUS81	HGNC	ENSG00000172732	tier1	-	-	26	0	0.00	28	4	12.50
OR4A5	0	genome.wustl.edu	37	11	51412386	51412386	+	Missense_Mutation	SNP	T	T	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	11	51412386	51412386	T	A	SNP	OR4A5	ENST00000319760	human	ensembl	74_37	-1	known	missense	c.10	p.N4Y	0.129	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840	tier1	-	-	18	0	0.00	14	6	30.00
VPS37B	0	genome.wustl.edu	37	12	123351947	123351947	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	12	123351947	123351947	G	C	SNP	VPS37B	ENST00000267202	human	ensembl	74_37	-1	known	missense	c.574	p.P192A	0.960	NULL	pfam_Mod_r	-	no_errors	VPS37B	HGNC	ENSG00000139722	tier1	-	-	16	0	0.00	18	11	37.93
TFAP2A	0	genome.wustl.edu	37	6	10400725	10400725	+	Missense_Mutation	SNP	A	A	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	6	10400725	10400725	A	T	SNP	TFAP2A	ENST00000379604	human	ensembl	74_37	-1	known	missense	c.981	p.D327E	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_alpha_N	-	no_errors	TFAP2A	HGNC	ENSG00000137203	tier1	-	-	43	0	0.00	31	7	18.42
CRB1	0	genome.wustl.edu	37	1	197398674	197398674	+	Silent	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	1	197398674	197398674	G	A	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	silent	c.2772	p.E924	0.020	NULL	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	tier1	-	-	59	0	0.00	47	9	16.07
CEACAM18	0	genome.wustl.edu	37	19	51981777	51981777	+	Silent	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	19	51981777	51981777	C	T	SNP	CEACAM18	ENST00000451626	human	ensembl	74_37	+1	known	silent	c.64	p.L22	0.002	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM18	HGNC	ENSG00000213822	tier1	-	-	57	0	0.00	55	14	20.29
PVRL3	0	genome.wustl.edu	37	3	110912071	110912071	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	3	110912071	110912071	G	C	SNP	PVRL3	ENST00000493615	human	ensembl	74_37	+1	putative	missense	c.1309	p.D437H	0.985	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	PVRL3	HGNC	ENSG00000177707	tier1	-	-	52	0	0.00	40	5	11.11
PIEZO2	0	genome.wustl.edu	37	18	10789250	10789250	+	Nonsense_Mutation	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	18	10789250	10789250	C	A	SNP	PIEZO2	ENST00000582913	human	ensembl	74_37	-1	known	nonsense	c.1996	p.E666*	0.647	NULL	NULL	-	no_errors	PIEZO2	HGNC	ENSG00000154864	tier1	-	-	91	0	0.00	60	35	36.84
BANK1	0	genome.wustl.edu	37	4	102791783	102791783	+	Silent	SNP	A	A	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	4	102791783	102791783	A	T	SNP	BANK1	ENST00000322953	human	ensembl	74_37	+1	known	silent	c.885	p.S295	0.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	BANK1	HGNC	ENSG00000153064	tier1	-	-	46	0	0.00	16	14	46.67
SPOCD1	0	genome.wustl.edu	37	1	32256805	32256805	+	Missense_Mutation	SNP	T	T	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	1	32256805	32256805	T	A	SNP	SPOCD1	ENST00000360482	human	ensembl	74_37	-1	known	missense	c.3050	p.K1017M	0.396	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,superfamily_TFIIS_cen_dom,smart_TFS2M	-	no_errors	SPOCD1	HGNC	ENSG00000134668	tier1	-	-	30	0	0.00	3	7	70.00
NINL	0	genome.wustl.edu	37	20	25457263	25457263	+	Silent	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	20	25457263	25457263	C	T	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	silent	c.2664	p.T888	0.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004	tier1	-	-	27	0	0.00	13	9	40.91
CAMTA2	0	genome.wustl.edu	37	17	4884615	4884615	+	Missense_Mutation	SNP	T	T	C			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	17	4884615	4884615	T	C	SNP	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	missense	c.674	p.E225G	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509	tier1	-	-	70	0	0.00	81	10	10.99
WDFY2	0	genome.wustl.edu	37	13	52277758	52277758	+	Silent	SNP	C	C	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	13	52277758	52277758	C	T	SNP	WDFY2	ENST00000298125	human	ensembl	74_37	+1	known	silent	c.306	p.N102	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY2	HGNC	ENSG00000139668	tier1	-	-	48	0	0.00	9	9	50.00
APOB	0	genome.wustl.edu	37	2	21228405	21228405	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	21228405	21228405	A	G	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.11335	p.F3779L	1.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	tier1	-	-	24	0	0.00	10	10	50.00
ANKRD36C	0	genome.wustl.edu	37	2	96648006	96648006	+	Silent	SNP	G	G	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	2	96648006	96648006	G	A	SNP	ANKRD36C	ENST00000456556	human	ensembl	74_37	-1	known	silent	c.591	p.G197	0.078	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36C	HGNC	ENSG00000174501	tier1	-	-	70	0	0.00	71	7	8.97
ZMAT1	0	genome.wustl.edu	37	X	101153192	101153192	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	X	101153192	101153192	C	A	SNP	ZMAT1	ENST00000372782	human	ensembl	74_37	-1	known	missense	c.230	p.G77V	1.000	smart_Znf_U1,smart_Znf_C2H2-like	superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT1	HGNC	ENSG00000166432	tier1	-	-	47	0	0.00	24	6	20.00
SLC1A3	0	genome.wustl.edu	37	5	36677165	36677165	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	5	36677165	36677165	G	T	SNP	SLC1A3	ENST00000265113	human	ensembl	74_37	+1	known	missense	c.739	p.V247F	1.000	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A3	HGNC	ENSG00000079215	tier1	-	-	71	0	0.00	68	7	9.33
P2RX2	0	genome.wustl.edu	37	12	133197082	133197082	+	Missense_Mutation	SNP	C	C	G			TCGA-FX-A3RE-01A-11D-A228-09	TCGA-FX-A3RE-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cdbbd701-9c05-4f9e-923d-06039dd8a04d	833ec0aa-f61e-49fc-acf0-ddd1a0a1f5c4	12	133197082	133197082	C	G	SNP	P2RX2	ENST00000343948	human	ensembl	74_37	+1	known	missense	c.687	p.H229Q	0.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X2_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX2	HGNC	ENSG00000187848	tier1	-	-	30	0	0.00	38	7	15.56
