Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SLC29A4	0	genome.wustl.edu	37	7	5336737	5336737	+	Silent	SNP	C	C	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	7	5336737	5336737	C	A	SNP	SLC29A4	ENST00000297195	human	ensembl	74_37	+1	known	silent	c.790	p.R264	0.822	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638	tier1	-	-	97	0	0.00	36	21	36.84
BRWD3	0	genome.wustl.edu	37	X	80064059	80064059	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	X	80064059	80064059	G	C	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	missense	c.159	p.H53Q	0.998	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	tier1	-	-	32	0	0.00	87	14	13.86
CETN1	0	genome.wustl.edu	37	18	580481	580481	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	18	580481	580481	C	A	SNP	CETN1	ENST00000327228	human	ensembl	74_37	+1	known	missense	c.73	p.L25I	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CETN1	HGNC	ENSG00000177143	tier1	-	-	22	0	0.00	6	10	62.50
CCDC144CP	0	genome.wustl.edu	37	17	20224677	20224677	+	RNA	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	17	20224677	20224677	G	A	SNP	CCDC144CP	ENST00000340196	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CCDC144CP	HGNC	ENSG00000154898	tier1	-	-	117	0	0.00	216	34	13.60
RUFY2	0	genome.wustl.edu	37	10	70156583	70156583	+	Frame_Shift_Del	DEL	T	T	-			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	10	70156583	70156583	T	-	DEL	RUFY2	ENST00000388768	human	ensembl	74_37	-1	known	frame_shift_del	c.457	p.M153fs	0.996	pfam_Run,smart_Run,pfscan_Run	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	RUFY2	HGNC	ENSG00000204130	tier1			22	0	0.00	22	3	12.00
ANKRD26P1	0	genome.wustl.edu	37	16	46584447	46584447	+	Splice_Site	SNP	C	C	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	16	46584447	46584447	C	A	SNP	ANKRD26P1	ENST00000566201	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	0.003	-	-	-	no_errors	ANKRD26P1	HGNC	ENSG00000261239	tier1	-	-	64	0	0.00	27	3	10.00
MAGI2	0	genome.wustl.edu	37	7	77797353	77797353	+	Missense_Mutation	SNP	C	C	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	7	77797353	77797353	C	G	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	missense	c.2476	p.V826L	0.981	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391	tier1	-	-	88	0	0.00	83	37	30.83
TIPIN	0	genome.wustl.edu	37	15	66671819	66671819	+	RNA	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	15	66671819	66671819	G	A	SNP	TIPIN	ENST00000561773	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.961	-	-	-	no_errors	TIPIN	HGNC	ENSG00000075131	tier1	-	-	139	0	0.00	128	17	11.72
PPP6R2	0	genome.wustl.edu	37	22	50870702	50870702	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	22	50870702	50870702	G	C	SNP	PPP6R2	ENST00000216061	human	ensembl	74_37	+1	known	missense	c.1344	p.Q448H	1.000	pfam_SAPS	pfam_SAPS,superfamily_ARM-type_fold	-	no_errors	PPP6R2	HGNC	ENSG00000100239	tier1	-	-	96	0	0.00	29	22	43.14
MAP4	0	genome.wustl.edu	37	3	47950560	47950560	+	Missense_Mutation	SNP	T	T	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	3	47950560	47950560	T	C	SNP	MAP4	ENST00000264724	human	ensembl	74_37	-1	known	missense	c.1172	p.E391G	0.971	NULL	pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849	tier1	-	-	116	0	0.00	134	23	14.65
FOXS1	0	genome.wustl.edu	37	20	30433004	30433004	+	Silent	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	20	30433004	30433004	G	A	SNP	FOXS1	ENST00000375978	human	ensembl	74_37	-1	known	silent	c.342	p.F114	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXS1	HGNC	ENSG00000179772	tier1	-	-	103	0	0.00	79	41	34.17
PATL1	0	genome.wustl.edu	37	11	59426412	59426412	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	11	59426412	59426412	G	C	SNP	PATL1	ENST00000300146	human	ensembl	74_37	-1	known	missense	c.353	p.P118R	1.000	pfam_Topo_II-assoc_PAT1	pfam_Topo_II-assoc_PAT1	-	no_errors	PATL1	HGNC	ENSG00000166889	tier1	-	-	24	0	0.00	27	10	27.03
CTNND2	0	genome.wustl.edu	37	5	11236827	11236827	+	Silent	SNP	A	A	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	5	11236827	11236827	A	G	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	silent	c.1737	p.F579	0.952	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	tier1	-	-	27	0	0.00	62	24	27.91
ABCC12	0	genome.wustl.edu	37	16	48122490	48122490	+	Silent	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	16	48122490	48122490	C	T	SNP	ABCC12	ENST00000311303	human	ensembl	74_37	-1	known	silent	c.3441	p.G1147	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC12	HGNC	ENSG00000140798	tier1	-	-	68	0	0.00	27	11	28.95
DCHS1	0	genome.wustl.edu	37	11	6652903	6652903	+	Missense_Mutation	SNP	T	T	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	11	6652903	6652903	T	C	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	missense	c.3619	p.N1207D	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	tier1	-	-	45	0	0.00	3	7	70.00
HTR3A	0	genome.wustl.edu	37	11	113857756	113857756	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	11	113857756	113857756	G	T	SNP	HTR3A	ENST00000355556	human	ensembl	74_37	+1	known	missense	c.1240	p.D414Y	0.582	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A,prints_5HT3_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	HTR3A	HGNC	ENSG00000166736	tier1	-	-	53	0	0.00	42	37	46.84
TIPIN	0	genome.wustl.edu	37	15	66671738	66671738	+	RNA	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	15	66671738	66671738	G	A	SNP	TIPIN	ENST00000561773	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TIPIN	HGNC	ENSG00000075131	tier1	-	-	125	0	0.00	121	14	10.37
FUT1	0	genome.wustl.edu	37	19	49254184	49254184	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	19	49254184	49254184	C	T	SNP	FUT1	ENST00000310160	human	ensembl	74_37	-1	known	missense	c.355	p.A119T	0.000	pfam_Glyco_trans_11	pfam_Glyco_trans_11	-	no_errors	FUT1	HGNC	ENSG00000174951	tier1	-	-	104	0	0.00	59	33	34.74
ENSG00000236432	0	genome.wustl.edu	37	2	228110634	228110634	+	RNA	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	2	228110634	228110634	G	A	SNP	ENSG00000236432	ENST00000396588	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC097662.2	Clone_based_vega_gene	ENSG00000236432	tier1	-	-	64	0	0.00	72	21	22.58
NBEA	0	genome.wustl.edu	37	13	36241588	36241588	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	13	36241588	36241588	C	T	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	missense	c.8479	p.R2827C	0.978	superfamily_WD40_repeat_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	tier1	rs200699050	-	76	0	0.00	11	19	63.33
FAM86B1	0	genome.wustl.edu	37	8	12044262	12044262	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	8	12044262	12044262	G	A	SNP	FAM86B1	ENST00000321602	human	ensembl	74_37	-1	known	missense	c.5	p.P2L	0.966	NULL	NULL	-	no_errors	FAM86B1	HGNC	ENSG00000186523	tier1	-	-	13	0	0.00	17	17	50.00
SLC12A5	0	genome.wustl.edu	37	20	44685180	44685180	+	Silent	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	20	44685180	44685180	C	T	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	silent	c.3156	p.I1052	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	tier1	-	-	54	0	0.00	69	14	16.87
OR1B1	0	genome.wustl.edu	37	9	125391322	125391322	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	9	125391322	125391322	C	T	SNP	OR1B1	ENST00000304833	human	ensembl	74_37	-1	known	missense	c.493	p.V165I	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1B1	HGNC	ENSG00000171484	tier1	-	-	32	0	0.00	47	7	12.96
DNAJC13	0	genome.wustl.edu	37	3	132186035	132186035	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	3	132186035	132186035	A	G	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.2086	p.K696E	1.000	superfamily_ARM-type_fold	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246	tier1	-	-	37	0	0.00	15	4	21.05
IRAK2	0	genome.wustl.edu	37	3	10261427	10261427	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	3	10261427	10261427	G	A	SNP	IRAK2	ENST00000256458	human	ensembl	74_37	+1	known	missense	c.967	p.V323I	0.029	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IRAK2	HGNC	ENSG00000134070	tier1	rs200632552	GMAF=0.0005	93	0	0.00	64	8	11.11
LAMA5	0	genome.wustl.edu	37	20	60937454	60937454	+	Splice_Site	SNP	A	A	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	20	60937454	60937454	A	T	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	splice_site	c.450+2	e2+2	1.000	-	-	-	no_errors	LAMA5	HGNC	ENSG00000130702	tier1	-	-	66	0	0.00	67	30	30.30
C1RL	0	genome.wustl.edu	37	12	7252338	7252338	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	12	7252338	7252338	G	A	SNP	C1RL	ENST00000266542	human	ensembl	74_37	-1	known	missense	c.635	p.T212I	0.000	superfamily_Sushi_SCR_CCP	pfam_Peptidase_S1,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	C1RL	HGNC	ENSG00000139178	tier1	-	-	120	0	0.00	45	9	16.67
PSMB8	0	genome.wustl.edu	37	6	32808751	32808751	+	Silent	SNP	C	C	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	6	32808751	32808751	C	G	SNP	PSMB8	ENST00000374882	human	ensembl	74_37	-1	known	silent	c.816	p.R272	0.772	NULL	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB8	HGNC	ENSG00000204264	tier1	-	-	57	0	0.00	30	25	45.45
SPG11	0	genome.wustl.edu	37	15	44876713	44876713	+	Nonsense_Mutation	SNP	G	G	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	15	44876713	44876713	G	T	SNP	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	nonsense	c.5165	p.S1722*	0.871	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133	tier1	-	-	23	0	0.00	43	8	15.69
NPTX2	0	genome.wustl.edu	37	7	98256505	98256505	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	7	98256505	98256505	A	G	SNP	NPTX2	ENST00000265634	human	ensembl	74_37	+1	known	missense	c.917	p.D306G	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX2	HGNC	ENSG00000106236	tier1	-	-	71	0	0.00	54	35	39.33
TP53	0	genome.wustl.edu	37	17	7578208	7578208	+	Missense_Mutation	SNP	T	T	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	17	7578208	7578208	T	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.641	p.H214R	0.999	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	51	0	0.00	7	37	84.09
PLEKHM1P	0	genome.wustl.edu	37	17	62788544	62788544	+	RNA	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	17	62788544	62788544	C	T	SNP	PLEKHM1P	ENST00000578036	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.393	-	-	-	no_errors	PLEKHM1P	HGNC	ENSG00000214176	tier1	-	-	45	0	0.00	47	11	18.97
PARP4	0	genome.wustl.edu	37	13	25021323	25021323	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	13	25021323	25021323	A	G	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	missense	c.3116	p.I1039T	1.000	pfam_VWF_A,pfscan_VWF_A	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	tier1	rs73172125	-	33	0	0.00	15	8	34.78
ALPK1	0	genome.wustl.edu	37	4	113332167	113332167	+	RNA	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	4	113332167	113332167	G	A	SNP	ALPK1	ENST00000505912	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ALPK1	HGNC	ENSG00000073331	tier1	-	-	53	0	0.00	28	6	17.65
POTEE	0	genome.wustl.edu	37	2	131976101	131976101	+	Silent	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	2	131976101	131976101	C	T	SNP	POTEE	ENST00000356920	human	ensembl	74_37	+1	known	silent	c.126	p.N42	0.028	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEE	HGNC	ENSG00000188219	tier1	-	-	214	0	0.00	62	57	47.90
CCDC103	0	genome.wustl.edu	37	17	42978925	42978925	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	17	42978925	42978925	C	T	SNP	CCDC103	ENST00000410006	human	ensembl	74_37	+1	known	missense	c.181	p.R61W	0.742	NULL	NULL	-	no_errors	CCDC103	HGNC	ENSG00000167131	tier1	-	-	64	0	0.00	36	10	21.74
KEL	0	genome.wustl.edu	37	7	142643361	142643361	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	7	142643361	142643361	G	A	SNP	KEL	ENST00000355265	human	ensembl	74_37	-1	known	missense	c.1247	p.T416M	0.208	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	KEL	HGNC	ENSG00000197993	tier1	-	-	51	0	0.00	43	14	24.56
MAGEB1	0	genome.wustl.edu	37	X	30269231	30269231	+	Silent	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	X	30269231	30269231	G	A	SNP	MAGEB1	ENST00000378981	human	ensembl	74_37	+1	known	silent	c.621	p.V207	0.091	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	tier1	-	-	18	0	0.00	20	17	45.95
ENSG00000236432	0	genome.wustl.edu	37	2	228110799	228110799	+	RNA	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	2	228110799	228110799	G	A	SNP	ENSG00000236432	ENST00000396588	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC097662.2	Clone_based_vega_gene	ENSG00000236432	tier1	-	-	43	0	0.00	38	9	19.15
PREX2	0	genome.wustl.edu	37	8	69058476	69058476	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	8	69058476	69058476	C	T	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.4120	p.R1374W	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	tier1	-	-	36	0	0.00	19	10	34.48
FAM74A3	0	genome.wustl.edu	37	9	40715674	40715674	+	RNA	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	9	40715674	40715674	G	A	SNP	FAM74A3	ENST00000604146	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.608	-	-	-	no_errors	FAM74A3	HGNC	ENSG00000204844	tier1	rs200737309	-	15	0	0.00	18	15	45.45
MUC19	0	genome.wustl.edu	37	12	40812989	40812989	+	Silent	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	12	40812989	40812989	C	T	SNP	MUC19	ENST00000425730	human	ensembl	74_37	+1	putative	silent	c.321	p.H107	1.000	NULL	pfam_VWF_type-D	-	no_errors	MUC19	HGNC	ENSG00000205592	tier1	-	-	28	0	0.00	23	5	17.24
USO1	0	genome.wustl.edu	37	4	76655122	76655122	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	4	76655122	76655122	G	T	SNP	USO1	ENST00000538159	human	ensembl	74_37	+1	known	missense	c.173	p.R58L	0.001	superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768	tier1	-	-	45	0	0.00	30	3	9.09
SALL1	0	genome.wustl.edu	37	16	51175551	51175551	+	Silent	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	16	51175551	51175551	G	A	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	silent	c.582	p.N194	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	tier1	-	-	152	0	0.00	46	27	36.99
LACTB	0	genome.wustl.edu	37	15	63419128	63419128	+	Silent	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	15	63419128	63419128	C	T	SNP	LACTB	ENST00000261893	human	ensembl	74_37	+1	known	silent	c.495	p.I165	1.000	pfam_Beta-lactam-related,superfamily_Beta-lactam/transpept-like	pfam_Beta-lactam-related,superfamily_Beta-lactam/transpept-like	-	no_errors	LACTB	HGNC	ENSG00000103642	tier1	-	-	53	0	0.00	57	7	10.94
ZNF177	0	genome.wustl.edu	37	19	9491685	9491685	+	Silent	SNP	T	T	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	19	9491685	9491685	T	A	SNP	ZNF177	ENST00000434737	human	ensembl	74_37	+1	known	silent	c.678	p.P226	0.410	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF177	HGNC	ENSG00000188629	tier1	-	-	55	0	0.00	37	29	43.94
DHX38	0	genome.wustl.edu	37	16	72139995	72139995	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	16	72139995	72139995	C	T	SNP	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	missense	c.2579	p.T860M	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829	tier1	-	-	81	0	0.00	9	33	78.57
ZNF304	0	genome.wustl.edu	37	19	57868276	57868276	+	Missense_Mutation	SNP	A	A	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	19	57868276	57868276	A	T	SNP	ZNF304	ENST00000282286	human	ensembl	74_37	+1	known	missense	c.1039	p.S347C	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF304	HGNC	ENSG00000131845	tier1	-	-	42	0	0.00	23	18	43.90
IQCF1	0	genome.wustl.edu	37	3	51937043	51937043	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	3	51937043	51937043	C	A	SNP	IQCF1	ENST00000310914	human	ensembl	74_37	-1	known	missense	c.66	p.E22D	0.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCF1	HGNC	ENSG00000173389	tier1	-	-	161	0	0.00	160	16	9.09
ENSG00000188971	0	genome.wustl.edu	37	2	69685840	69685841	+	RNA	DEL	CA	CA	-			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	2	69685840	69685841	CA	-	DEL	ENSG00000188971	ENST00000606389	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-427H3.3	Clone_based_vega_gene	ENSG00000188971	tier1			33	0	0.00	32	5	13.51
GTF2A2	0	genome.wustl.edu	37	15	59931102	59931102	+	RNA	SNP	A	A	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	15	59931102	59931102	A	C	SNP	GTF2A2	ENST00000267869	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.919	-	-	-	no_errors	GTF2A2	HGNC	ENSG00000140307	tier1	-	-	19	0	0.00	24	5	17.24
MICAL3	0	genome.wustl.edu	37	22	18273498	18273498	+	Nonstop_Mutation	SNP	T	T	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	22	18273498	18273498	T	C	SNP	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	nonstop	c.6009	p.*2003W	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	tier1	-	-	35	0	0.00	39	7	14.89
UBAP1	0	genome.wustl.edu	37	9	34241448	34241449	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	9	34241448	34241449	AG	-	DEL	UBAP1	ENST00000545103	human	ensembl	74_37	+1	known	frame_shift_del	c.617_618	p.K207fs	1.000:1.000	NULL	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP1	HGNC	ENSG00000165006	tier1			22	0	0.00	20	5	20.00
LHX2	0	genome.wustl.edu	37	9	126777694	126777694	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	9	126777694	126777694	C	T	SNP	LHX2	ENST00000373615	human	ensembl	74_37	+1	known	missense	c.617	p.A206V	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX2	HGNC	ENSG00000106689	tier1	-	-	27	0	0.00	14	7	33.33
TEX2	0	genome.wustl.edu	37	17	62290410	62290410	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	17	62290410	62290410	G	C	SNP	TEX2	ENST00000258991	human	ensembl	74_37	-1	known	missense	c.1168	p.L390V	0.080	NULL	pfam_DUF2404	-	no_errors	TEX2	HGNC	ENSG00000136478	tier1	-	-	86	0	0.00	101	16	13.68
NUMBL	0	genome.wustl.edu	37	19	41173893	41173898	+	In_Frame_Del	DEL	TGCTGT	TGCTGT	-			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	TGCTGT	TGCTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	19	41173893	41173898	TGCTGT	-	DEL	NUMBL	ENST00000252891	human	ensembl	74_37	-1	known	in_frame_del	c.1310_1305	p.QQ439in_frame_del	1.000:1.000:1.000:1.000:1.000:0.998	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pirsf_Numb/numb-like,pfscan_PTB/PI_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245	tier1			NA	NA	NA	NA	NA	NA
ITGA8	0	genome.wustl.edu	37	10	15719609	15719609	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	10	15719609	15719609	C	A	SNP	ITGA8	ENST00000378076	human	ensembl	74_37	-1	known	missense	c.658	p.G220W	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943	tier1	-	-	45	0	0.00	30	9	23.08
LINC00273	0	genome.wustl.edu	37	16	33961806	33961806	+	RNA	DEL	C	C	-			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	16	33961806	33961806	C	-	DEL	LINC00273	ENST00000539813	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	LINC00273	HGNC	ENSG00000256642	tier1			51	0	0.00	32	6	15.79
ZCCHC13	0	genome.wustl.edu	37	X	73524388	73524388	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	X	73524388	73524388	G	C	SNP	ZCCHC13	ENST00000339534	human	ensembl	74_37	+1	known	missense	c.287	p.R96T	0.026	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC13	HGNC	ENSG00000187969	tier1	-	-	27	0	0.00	53	9	14.52
MMP10	0	genome.wustl.edu	37	11	102647069	102647069	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	11	102647069	102647069	C	A	SNP	MMP10	ENST00000279441	human	ensembl	74_37	-1	known	missense	c.874	p.A292S	0.000	pirsf_Pept_M10A_Metazoans,superfamily_Hemopexin-like_dom	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP10	HGNC	ENSG00000166670	tier1	-	-	24	0	0.00	26	4	13.33
USO1	0	genome.wustl.edu	37	4	76722251	76722251	+	Missense_Mutation	SNP	T	T	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	4	76722251	76722251	T	G	SNP	USO1	ENST00000538159	human	ensembl	74_37	+1	known	missense	c.1911	p.I637M	1.000	pfam_Vesicle_Uso1_P115_head,superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768	tier1	-	-	26	0	0.00	12	5	29.41
RIPK2	0	genome.wustl.edu	37	8	90796327	90796327	+	Missense_Mutation	SNP	A	A	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	8	90796327	90796327	A	C	SNP	RIPK2	ENST00000220751	human	ensembl	74_37	+1	known	missense	c.989	p.E330A	0.153	pirsf_Rcpt-int_Ser/Thr_kinase-2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CARD,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rcpt-int_Ser/Thr_kinase-2,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_CARD,pfscan_Prot_kinase_dom	-	no_errors	RIPK2	HGNC	ENSG00000104312	tier1	-	-	40	0	0.00	33	8	19.51
CASP12	0	genome.wustl.edu	37	11	104761968	104761968	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	11	104761968	104761968	A	G	SNP	CASP12	ENST00000375726	human	ensembl	74_37	-1	known	missense	c.596	p.I199T	0.759	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP12	HGNC	ENSG00000204403	tier1	-	-	80	0	0.00	77	13	14.44
EPM2A	0	genome.wustl.edu	37	6	145956349	145956349	+	RNA	SNP	C	C	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	6	145956349	145956349	C	G	SNP	EPM2A	ENST00000489412	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EPM2A	HGNC	ENSG00000112425	tier1	-	-	39	0	0.00	11	11	50.00
MRGPRX3	0	genome.wustl.edu	37	11	18159469	18159469	+	Silent	SNP	C	C	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	11	18159469	18159469	C	G	SNP	MRGPRX3	ENST00000396275	human	ensembl	74_37	+1	known	silent	c.720	p.S240	0.170	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX3	HGNC	ENSG00000179826	tier1	-	-	57	0	0.00	33	24	42.11
NFASC	0	genome.wustl.edu	37	1	204987181	204987181	+	RNA	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	1	204987181	204987181	G	A	SNP	NFASC	ENST00000495396	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NFASC	HGNC	ENSG00000163531	tier1	-	-	27	0	0.00	15	5	25.00
TIPIN	0	genome.wustl.edu	37	15	66671790	66671790	+	RNA	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	15	66671790	66671790	G	A	SNP	TIPIN	ENST00000561773	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TIPIN	HGNC	ENSG00000075131	tier1	-	-	127	0	0.00	124	16	11.35
IRS1	0	genome.wustl.edu	37	2	227662528	227662528	+	Silent	SNP	G	G	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	2	227662528	227662528	G	T	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	silent	c.927	p.T309	0.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047	tier1	-	-	69	0	0.00	82	15	15.46
LRTM2	0	genome.wustl.edu	37	12	1944811	1944811	+	RNA	SNP	G	G	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	12	1944811	1944811	G	T	SNP	LRTM2	ENST00000543730	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	LRTM2	HGNC	ENSG00000166159	tier1	-	-	86	0	0.00	40	8	16.67
CCDC144NL	0	genome.wustl.edu	37	17	20796708	20796708	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	17	20796708	20796708	G	A	SNP	CCDC144NL	ENST00000327925	human	ensembl	74_37	-1	known	missense	c.412	p.P138S	0.299	NULL	NULL	-	no_errors	CCDC144NL	HGNC	ENSG00000205212	tier1	-	-	89	0	0.00	126	39	23.64
CNTNAP3	0	genome.wustl.edu	37	9	39171379	39171379	+	Silent	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	9	39171379	39171379	C	T	SNP	CNTNAP3	ENST00000297668	human	ensembl	74_37	-1	known	silent	c.1320	p.R440	0.001	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	tier1	-	-	178	0	0.00	128	24	15.79
CR1	0	genome.wustl.edu	37	1	207760910	207760910	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	1	207760910	207760910	C	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	nonsense	c.5710	p.R1904*	0.669	pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	tier1	-	-	78	0	0.00	39	15	27.78
ENSG00000264164	0	genome.wustl.edu	37	17	30422196	30422196	+	RNA	SNP	A	A	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	17	30422196	30422196	A	G	SNP	ENSG00000264164	ENST00000358484	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.048	-	-	-	no_errors	RP11-640N20.6	Clone_based_vega_gene	ENSG00000264164	tier1	-	-	51	0	0.00	39	41	51.25
IL32	0	genome.wustl.edu	37	16	3119356	3119356	+	Nonstop_Mutation	SNP	A	A	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	16	3119356	3119356	A	G	SNP	IL32	ENST00000396890	human	ensembl	74_37	+1	known	nonstop	c.705	p.*235W	0.001	NULL	NULL	-	no_errors	IL32	HGNC	ENSG00000008517	tier1	-	-	48	0	0.00	30	4	11.76
GALNT12	0	genome.wustl.edu	37	9	101589137	101589137	+	Silent	SNP	G	G	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	9	101589137	101589137	G	C	SNP	GALNT12	ENST00000375011	human	ensembl	74_37	+1	known	silent	c.645	p.G215	0.934	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT12	HGNC	ENSG00000119514	tier1	-	-	55	0	0.00	31	17	35.42
SLC2A4	0	genome.wustl.edu	37	17	7189830	7189830	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	17	7189830	7189830	C	T	SNP	SLC2A4	ENST00000317370	human	ensembl	74_37	+1	known	missense	c.1412	p.T471I	1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_4,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A4	HGNC	ENSG00000181856	tier1	-	-	70	0	0.00	121	17	12.32
CNTNAP2	0	genome.wustl.edu	37	7	148113753	148113753	+	RNA	SNP	T	T	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	7	148113753	148113753	T	C	SNP	CNTNAP2	ENST00000463592	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	tier1	-	-	43	0	0.00	41	9	18.00
MVB12B	0	genome.wustl.edu	37	9	129268634	129268635	+	RNA	INS	-	-	GA			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	9	129268634	129268635	-	GA	INS	MVB12B	ENST00000485886	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MVB12B	HGNC	ENSG00000196814	tier1			57	0	0.00	34	4	10.53
PORCN	0	genome.wustl.edu	37	X	48374461	48374461	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	X	48374461	48374461	G	A	SNP	PORCN	ENST00000326194	human	ensembl	74_37	+1	known	missense	c.1100	p.R367H	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312	tier1	-	-	51	0	0.00	20	98	80.99
SRPK2	0	genome.wustl.edu	37	7	104946954	104946954	+	Missense_Mutation	SNP	T	T	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	7	104946954	104946954	T	C	SNP	SRPK2	ENST00000465112	human	ensembl	74_37	-1	known	missense	c.136	p.K46E	0.072	NULL	NULL	-	no_errors	SRPK2	HGNC	ENSG00000135250	tier1	-	-	45	0	0.00	21	16	43.24
EPHA6	0	genome.wustl.edu	37	3	97198209	97198209	+	Splice_Site	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	3	97198209	97198209	G	A	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	splice_site	c.2074+1	e9+1	1.000	-	-	-	no_errors	EPHA6	HGNC	ENSG00000080224	tier1	-	-	54	0	0.00	7	8	53.33
ADD1	0	genome.wustl.edu	37	4	2929906	2929906	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	4	2929906	2929906	C	T	SNP	ADD1	ENST00000264758	human	ensembl	74_37	+1	known	missense	c.1963	p.P655S	0.981	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD1	HGNC	ENSG00000087274	tier1	-	-	48	0	0.00	35	4	10.26
PCDHA3	0	genome.wustl.edu	37	5	140180904	140180904	+	Missense_Mutation	SNP	A	A	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	5	140180904	140180904	A	T	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.122	p.H41L	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	tier1	-	-	105	0	0.00	83	42	33.33
ABCA6	0	genome.wustl.edu	37	17	67109805	67109805	+	Missense_Mutation	SNP	T	T	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	17	67109805	67109805	T	G	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	missense	c.1856	p.Q619P	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	tier1	-	-	70	0	0.00	49	24	32.88
WIF1	0	genome.wustl.edu	37	12	65456299	65456299	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	12	65456299	65456299	A	G	SNP	WIF1	ENST00000286574	human	ensembl	74_37	-1	known	missense	c.788	p.I263T	1.000	smart_EG-like_dom	pfam_WIF,pfam_EGF_extracell,smart_WIF,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_WIF,prints_Wnt-inh	-	no_errors	WIF1	HGNC	ENSG00000156076	tier1	-	-	49	0	0.00	30	20	40.00
CTNND1	0	genome.wustl.edu	37	11	57575922	57575922	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	11	57575922	57575922	C	T	SNP	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	missense	c.2152	p.L718F	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561	tier1	-	-	72	0	0.00	61	14	18.67
PPP1CA	0	genome.wustl.edu	37	11	67168488	67168488	+	RNA	SNP	G	G	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	11	67168488	67168488	G	C	SNP	PPP1CA	ENST00000529724	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	PPP1CA	HGNC	ENSG00000172531	tier1	-	-	50	0	0.00	9	45	83.33
ANP32BP1	0	genome.wustl.edu	37	15	75614967	75614971	+	RNA	DEL	GCGGC	GCGGC	-			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	GCGGC	GCGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	15	75614967	75614971	GCGGC	-	DEL	ANP32BP1	ENST00000564205	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012:0.007:0.001:0.002:0.000	-	-	-	no_errors	ANP32BP1	HGNC	ENSG00000259790	tier1			NA	NA	NA	NA	NA	NA
SEZ6L	0	genome.wustl.edu	37	22	26707840	26707840	+	Silent	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	22	26707840	26707840	C	T	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	silent	c.1788	p.P596	0.327	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095	tier1	rs150994059	-	28	0	0.00	26	9	25.71
ATP2A3	0	genome.wustl.edu	37	17	3839703	3839703	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	17	3839703	3839703	C	T	SNP	ATP2A3	ENST00000359983	human	ensembl	74_37	-1	known	nonsense	c.2382	p.W794*	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_IIA	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A3	HGNC	ENSG00000074370	tier1	-	-	139	0	0.00	227	34	12.98
LOC101929232	0	genome.wustl.edu	37	15	29037119	29037119	+	RNA	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	15	29037119	29037119	G	A	SNP	LOC101929232	ENST00000562423	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.997	-	-	-	no_errors	RP11-578F21.12	Clone_based_vega_gene	ENSG00000261377	tier1	-	-	47	0	0.00	35	16	31.37
RNU7-1	0	genome.wustl.edu	37	12	7053350	7053378	+	RNA	DEL	TAGTCAAGGCATAGGCTGCTGGCCTGGGG	TAGTCAAGGCATAGGCTGCTGGCCTGGGG	-			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	TAGTCAAGGCATAGGCTGCTGGCCTGGGG	TAGTCAAGGCATAGGCTGCTGGCCTGGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	12	7053350	7053378	TAGTCAAGGCATAGGCTGCTGGCCTGGGG	-	DEL	RNU7-1	ENST00000607421	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.018:0.080:0.087:0.094:0.101:0.107:0.113:0.119:0.125:0.130:0.136:0.141:0.146:0.151:0.155:0.160:0.164:0.169:0.173	-	-	-	no_errors	U47924.31	Clone_based_vega_gene	ENSG00000272173	tier1			NA	NA	NA	NA	NA	NA
ARMC8	0	genome.wustl.edu	37	3	137991910	137991910	+	Silent	SNP	G	G	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	3	137991910	137991910	G	T	SNP	ARMC8	ENST00000469044	human	ensembl	74_37	+1	known	silent	c.1581	p.V527	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC8	HGNC	ENSG00000114098	tier1	-	-	40	0	0.00	33	14	29.79
ENO2	0	genome.wustl.edu	37	12	7026257	7026257	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	12	7026257	7026257	G	C	SNP	ENO2	ENST00000229277	human	ensembl	74_37	+1	known	missense	c.296	p.G99A	1.000	pfam_Enolase_N,pirsf_Enolase,tigrfam_Enolase	pfam_Enolase_C,pfam_Enolase_N,pfam_MeAsp_NH4-lyase_C,pirsf_Enolase,prints_Enolase,tigrfam_Enolase	-	no_errors	ENO2	HGNC	ENSG00000111674	tier1	-	-	40	0	0.00	11	22	66.67
FANCA	0	genome.wustl.edu	37	16	89837022	89837022	+	Silent	SNP	C	C	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	16	89837022	89837022	C	T	SNP	FANCA	ENST00000389301	human	ensembl	74_37	-1	known	silent	c.2172	p.T724	0.287	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741	tier1	-	-	82	0	0.00	6	17	73.91
NLRP1	0	genome.wustl.edu	37	17	5418160	5418160	+	Frame_Shift_Del	DEL	G	G	-			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	17	5418160	5418160	G	-	DEL	NLRP1	ENST00000572272	human	ensembl	74_37	-1	known	frame_shift_del	c.4336	p.Q1446fs	0.924	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	tier1			127	0	0.00	152	27	15.08
PDLIM5	0	genome.wustl.edu	37	4	95508214	95508214	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	4	95508214	95508214	G	A	SNP	PDLIM5	ENST00000380180	human	ensembl	74_37	+1	known	missense	c.686	p.R229H	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDLIM5	HGNC	ENSG00000163110	tier1	-	-	60	0	0.00	15	18	54.55
C1RL	0	genome.wustl.edu	37	12	7252337	7252337	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	12	7252337	7252337	G	C	SNP	C1RL	ENST00000544702	human	ensembl	74_37	-1	putative	missense	c.683	p.P228R	0.000	NULL	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	-	no_errors	C1RL	HGNC	ENSG00000139178	tier1	-	-	119	0	0.00	45	6	11.76
HERC4	0	genome.wustl.edu	37	10	69832684	69832684	+	Missense_Mutation	SNP	T	T	C			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	10	69832684	69832684	T	C	SNP	HERC4	ENST00000395198	human	ensembl	74_37	-1	known	missense	c.182	p.N61S	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC4	HGNC	ENSG00000148634	tier1	-	-	92	0	0.00	20	23	53.49
FZR1	0	genome.wustl.edu	37	19	3534432	3534432	+	Missense_Mutation	SNP	A	A	T			TCGA-FX-A3TO-01A-11D-A228-09	TCGA-FX-A3TO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1c07e88-920e-4b30-8c6d-207e72f77f25	fcdad24d-eab3-4b5d-98a2-470456e019cf	19	3534432	3534432	A	T	SNP	FZR1	ENST00000395095	human	ensembl	74_37	+1	known	missense	c.1361	p.D454V	0.998	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FZR1	HGNC	ENSG00000105325	tier1	-	-	90	0	0.00	46	37	44.58
