Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
STOML2	0	genome.wustl.edu	37	9	35100719	35100719	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	9	35100719	35100719	C	T	SNP	STOML2	ENST00000356493	human	ensembl	74_37	-1	known	missense	c.809	p.G270E	1.000	NULL	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	STOML2	HGNC	ENSG00000165283	tier1	-	-	50	0	0.00	24	13	35.14
MALAT1	0	genome.wustl.edu	37	11	65271780	65271780	+	RNA	DEL	T	T	-			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	11	65271780	65271780	T	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	tier1			23	0	0.00	22	5	18.52
HUWE1	0	genome.wustl.edu	37	X	53573735	53573735	+	Missense_Mutation	SNP	C	C	G			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	X	53573735	53573735	C	G	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.10688	p.G3563A	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	tier1	-	-	34	0	0.00	21	7	25.00
KCNV1	0	genome.wustl.edu	37	8	110980696	110980696	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	8	110980696	110980696	G	T	SNP	KCNV1	ENST00000297404	human	ensembl	74_37	-1	known	missense	c.1124	p.T375N	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794	tier1	-	-	36	0	0.00	31	10	24.39
CACNA1S	0	genome.wustl.edu	37	1	201009019	201009019	+	Silent	SNP	G	G	A			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	1	201009019	201009019	G	A	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	silent	c.5562	p.S1854	0.906	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	tier1	-	-	34	0	0.00	31	10	24.39
MAPK8IP3	0	genome.wustl.edu	37	16	1814328	1814328	+	Silent	SNP	G	G	C			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	16	1814328	1814328	G	C	SNP	MAPK8IP3	ENST00000250894	human	ensembl	74_37	+1	known	silent	c.2145	p.L715	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	tier1	-	-	45	0	0.00	24	21	46.67
ITPKA	0	genome.wustl.edu	37	15	41793952	41793952	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	15	41793952	41793952	G	A	SNP	ITPKA	ENST00000260386	human	ensembl	74_37	+1	known	missense	c.706	p.G236S	1.000	NULL	pfam_IPK	-	no_errors	ITPKA	HGNC	ENSG00000137825	tier1	-	-	31	0	0.00	55	16	22.54
ABHD4	0	genome.wustl.edu	37	14	23078791	23078791	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	14	23078791	23078791	G	A	SNP	ABHD4	ENST00000428304	human	ensembl	74_37	+1	known	missense	c.914	p.R305Q	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,prints_AB_hydrolase_1	-	no_errors	ABHD4	HGNC	ENSG00000100439	tier1	-	-	54	0	0.00	17	31	64.58
NRP1	0	genome.wustl.edu	37	10	33510663	33510663	+	Silent	SNP	G	G	A			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	10	33510663	33510663	G	A	SNP	NRP1	ENST00000265371	human	ensembl	74_37	-1	known	silent	c.1266	p.Y422	0.998	pirsf_Neuropilin,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250	tier1	rs2229935	-	96	0	0.00	22	5	18.52
RBP3	0	genome.wustl.edu	37	10	48388773	48388773	+	Frame_Shift_Del	DEL	A	A	-			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	10	48388773	48388773	A	-	DEL	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	frame_shift_del	c.2105	p.F702fs	1.000	NULL	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618	tier1			47	0	0.00	13	2	13.33
HERC2	0	genome.wustl.edu	37	15	28501459	28501459	+	Missense_Mutation	SNP	T	T	G			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	15	28501459	28501459	T	G	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.2522	p.H841P	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	tier1	-	-	116	0	0.00	105	28	20.90
SRPX2	0	genome.wustl.edu	37	X	99905993	99905993	+	RNA	SNP	A	A	G			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	X	99905993	99905993	A	G	SNP	SRPX2	ENST00000481988	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.031	-	-	-	no_errors	SRPX2	HGNC	ENSG00000102359	tier1	-	-	13	0	0.00	7	4	36.36
STAT5A	0	genome.wustl.edu	37	17	40441970	40441970	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	17	40441970	40441970	C	T	SNP	STAT5A	ENST00000345506	human	ensembl	74_37	+1	known	missense	c.215	p.A72V	1.000	pfam_STAT_TF_prot_interaction,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5A	HGNC	ENSG00000126561	tier1	-	-	34	0	0.00	18	10	35.71
MYH14	0	genome.wustl.edu	37	19	50813026	50813026	+	Silent	SNP	C	C	A			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	19	50813026	50813026	C	A	SNP	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	silent	c.6090	p.S2030	0.001	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	tier1	-	-	35	0	0.00	30	14	31.82
BOD1L1	0	genome.wustl.edu	37	4	13604281	13604281	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	4	13604281	13604281	C	T	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.4243	p.D1415N	0.004	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219	tier1	-	-	116	0	0.00	55	32	36.78
GATA2	0	genome.wustl.edu	37	3	128202738	128202738	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	3	128202738	128202738	G	T	SNP	GATA2	ENST00000341105	human	ensembl	74_37	-1	known	missense	c.982	p.Q328K	1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA2	HGNC	ENSG00000179348	tier1	-	-	61	0	0.00	45	14	23.73
TBC1D8B	0	genome.wustl.edu	37	X	106061981	106061981	+	Missense_Mutation	SNP	A	A	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	X	106061981	106061981	A	T	SNP	TBC1D8B	ENST00000357242	human	ensembl	74_37	+1	known	missense	c.219	p.Q73H	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	tier1	-	-	73	0	0.00	65	25	27.78
EFCAB7	0	genome.wustl.edu	37	1	64036710	64036710	+	Missense_Mutation	SNP	A	A	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	1	64036710	64036710	A	T	SNP	EFCAB7	ENST00000371088	human	ensembl	74_37	+1	known	missense	c.1726	p.I576F	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB7	HGNC	ENSG00000203965	tier1	-	-	62	0	0.00	7	37	84.09
NBPF12	0	genome.wustl.edu	37	1	146408160	146408160	+	Silent	SNP	C	C	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	1	146408160	146408160	C	T	SNP	NBPF12	ENST00000446760	human	ensembl	74_37	+1	known	silent	c.981	p.N327	0.001	NULL	pfam_NBPF_dom	-	no_errors	NBPF12	HGNC	ENSG00000186275	tier1	-	-	180	0	0.00	131	63	32.31
SLC2A2	0	genome.wustl.edu	37	3	170723133	170723133	+	Missense_Mutation	SNP	G	G	C			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	3	170723133	170723133	G	C	SNP	SLC2A2	ENST00000314251	human	ensembl	74_37	-1	known	missense	c.904	p.Q302E	0.986	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_2,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A2	HGNC	ENSG00000163581	tier1	-	-	52	0	0.00	50	10	16.67
HS1BP3	0	genome.wustl.edu	37	2	20840695	20840695	+	Silent	SNP	G	G	A			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	2	20840695	20840695	G	A	SNP	HS1BP3	ENST00000406618	human	ensembl	74_37	-1	putative	silent	c.444	p.P148	0.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	HS1BP3	HGNC	ENSG00000118960	tier1	-	-	68	0	0.00	41	35	46.05
RP1L1	0	genome.wustl.edu	37	8	10480360	10480360	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	8	10480360	10480360	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.352	p.R118W	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	tier1	rs200121539	-	84	0	0.00	53	23	30.26
ENSG00000215954	0	genome.wustl.edu	37	11	112118610	112118619	+	RNA	DEL	ACACACACAC	ACACACACAC	-			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	ACACACACAC	ACACACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	11	112118610	112118619	ACACACACAC	-	DEL	ENSG00000215954	ENST00000401135	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.028:0.021:0.024:0.025:0.042:0.052:0.057:0.059:0.067:0.070	-	-	-	no_errors	AP002884.1	Clone_based_ensembl_gene	ENSG00000215954	tier1			NA	NA	NA	NA	NA	NA
FAM120A	0	genome.wustl.edu	37	9	96318801	96318801	+	Silent	SNP	G	G	A			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	9	96318801	96318801	G	A	SNP	FAM120A	ENST00000333936	human	ensembl	74_37	+1	known	silent	c.2496	p.G832	0.996	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828	tier1	-	-	57	0	0.00	53	24	31.17
FLCN	0	genome.wustl.edu	37	17	17129630	17129630	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	17	17129630	17129630	G	A	SNP	FLCN	ENST00000285071	human	ensembl	74_37	-1	known	missense	c.256	p.R86W	1.000	NULL	pfam_Folliculin	-	no_errors	FLCN	HGNC	ENSG00000154803	tier1	-	-	68	0	0.00	29	28	49.12
HNF1B	0	genome.wustl.edu	37	17	36091616	36091616	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	17	36091616	36091616	G	T	SNP	HNF1B	ENST00000225893	human	ensembl	74_37	-1	known	missense	c.1015	p.P339T	1.000	pfam_HNF1b_C	pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1B	HGNC	ENSG00000108753	tier1	-	-	65	0	0.00	32	19	37.25
DDX26B	0	genome.wustl.edu	37	X	134713794	134713794	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	X	134713794	134713794	C	T	SNP	DDX26B	ENST00000370752	human	ensembl	74_37	+1	known	missense	c.2090	p.A697V	0.001	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	tier1	-	-	38	0	0.00	43	17	28.33
KIAA1432	0	genome.wustl.edu	37	9	5720614	5720614	+	Frame_Shift_Del	DEL	T	T	-			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	9	5720614	5720614	T	-	DEL	KIAA1432	ENST00000418622	human	ensembl	74_37	+1	known	frame_shift_del	c.347	p.V116fs	1.000	superfamily_WD40_repeat_dom	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036	tier1			53	0	0.00	6	13	68.42
STOM	0	genome.wustl.edu	37	9	124110391	124110391	+	Missense_Mutation	SNP	T	T	C			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	9	124110391	124110391	T	C	SNP	STOM	ENST00000286713	human	ensembl	74_37	-1	known	missense	c.562	p.K188E	1.000	pfam_Band_7,smart_Band_7,prints_Stomatin	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	STOM	HGNC	ENSG00000148175	tier1	-	-	55	0	0.00	50	24	32.43
RABGGTB	0	genome.wustl.edu	37	1	76259678	76259714	+	RNA	DEL	CCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT	CCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT	-			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	CCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT	CCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	1	76259678	76259714	CCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT	-	DEL	RABGGTB	ENST00000459697	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.001:0.001:0.000:0.002:0.005:0.008:0.009:0.007:0.005:0.003:0.003:0.001:0.001:0.002:0.001:0.001:0.001:0.000:0.000:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000	-	-	-	no_errors	RABGGTB	HGNC	ENSG00000137955	tier1			NA	NA	NA	NA	NA	NA
SKIV2L	0	genome.wustl.edu	37	6	31937190	31937190	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	6	31937190	31937190	G	T	SNP	SKIV2L	ENST00000375394	human	ensembl	74_37	+1	known	missense	c.3533	p.R1178L	1.000	pfam_DSH_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351	tier1	-	-	85	0	0.00	23	16	41.03
MAGEC3	0	genome.wustl.edu	37	X	140953333	140953333	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	X	140953333	140953333	G	T	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	missense	c.200	p.R67M	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	tier1	-	-	98	0	0.00	74	35	32.11
CDH26	0	genome.wustl.edu	37	20	58544078	58544078	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	20	58544078	58544078	G	T	SNP	CDH26	ENST00000244047	human	ensembl	74_37	+1	known	missense	c.126	p.K42N	0.003	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	tier1	-	-	79	0	0.00	45	4	8.16
HERC4	0	genome.wustl.edu	37	10	69832687	69832687	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	10	69832687	69832687	C	T	SNP	HERC4	ENST00000395198	human	ensembl	74_37	-1	known	missense	c.179	p.C60Y	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC4	HGNC	ENSG00000148634	tier1	-	-	93	0	0.00	42	4	8.70
VCPKMT	0	genome.wustl.edu	37	14	50579351	50579351	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	14	50579351	50579351	G	T	SNP	VCPKMT	ENST00000395860	human	ensembl	74_37	-1	known	nonsense	c.657	p.Y219*	1.000	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	VCPKMT	HGNC	ENSG00000100483	tier1	-	-	32	0	0.00	23	4	14.81
GBX2	0	genome.wustl.edu	37	2	237074887	237074887	+	Silent	SNP	G	G	A			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	2	237074887	237074887	G	A	SNP	GBX2	ENST00000306318	human	ensembl	74_37	-1	known	silent	c.717	p.G239	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GBX2	HGNC	ENSG00000168505	tier1	-	-	36	0	0.00	21	16	43.24
STARD9	0	genome.wustl.edu	37	15	42979512	42979512	+	Missense_Mutation	SNP	A	A	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	15	42979512	42979512	A	T	SNP	STARD9	ENST00000290607	human	ensembl	74_37	+1	known	missense	c.5736	p.E1912D	0.001	NULL	pfam_Kinesin_motor_dom,pfam_START_lipid-bd_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_START_lipid-bd_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	STARD9	HGNC	ENSG00000159433	tier1	-	-	28	0	0.00	61	16	20.78
OR2B3	0	genome.wustl.edu	37	6	29054540	29054540	+	Silent	SNP	C	C	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	6	29054540	29054540	C	T	SNP	OR2B3	ENST00000377173	human	ensembl	74_37	-1	known	silent	c.486	p.L162	0.010	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2B3	HGNC	ENSG00000204703	tier1	-	-	21	0	0.00	10	3	23.08
RIMBP3	0	genome.wustl.edu	37	22	20458608	20458608	+	Silent	SNP	C	C	A			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	22	20458608	20458608	C	A	SNP	RIMBP3	ENST00000426804	human	ensembl	74_37	-1	known	silent	c.2694	p.P898	0.841	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	RIMBP3	HGNC	ENSG00000196622	tier1	-	-	171	0	0.00	180	31	14.69
TP53	0	genome.wustl.edu	37	17	7574019	7574020	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	17	7574019	7574020	CT	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.1008_1007	p.E336fs	0.004:0.009	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			26	0	0.00	3	11	78.57
SRGAP1	0	genome.wustl.edu	37	12	64491140	64491140	+	Missense_Mutation	SNP	C	C	G			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	12	64491140	64491140	C	G	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	missense	c.1798	p.L600V	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	tier1	-	-	42	0	0.00	33	20	37.74
ZZEF1	0	genome.wustl.edu	37	17	4007959	4007959	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	17	4007959	4007959	G	T	SNP	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	missense	c.1541	p.A514E	0.999	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	tier1	-	-	55	0	0.00	51	5	8.93
SLC27A4	0	genome.wustl.edu	37	9	131107639	131107639	+	Silent	SNP	C	C	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	9	131107639	131107639	C	T	SNP	SLC27A4	ENST00000300456	human	ensembl	74_37	+1	known	silent	c.367	p.L123	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A4	HGNC	ENSG00000167114	tier1	-	-	78	0	0.00	57	29	33.72
ITGA9	0	genome.wustl.edu	37	3	37574815	37574815	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A4EI-01A-11D-A24N-09	TCGA-IE-A4EI-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	522dc834-8367-4f49-b93b-fcba91a2de7e	9f3e9eb7-1873-4f33-a9c8-671eae8cc921	3	37574815	37574815	G	T	SNP	ITGA9	ENST00000264741	human	ensembl	74_37	+1	known	missense	c.1384	p.V462F	1.000	pfam_Integrin_alpha-2,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668	tier1	-	-	94	0	0.00	56	5	8.20
