Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NGRN	0	genome.wustl.edu	37	15	90814896	90814896	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	15	90814896	90814896	C	T	SNP	NGRN	ENST00000379095	human	ensembl	74_37	+1	known	missense	c.752	p.A251V	0.000	pfam_Neugrin-related	pfam_Neugrin-related	-	no_errors	NGRN	HGNC	ENSG00000182768	tier1	-	-	158	0	0.00	69	117	62.90
SCNN1G	0	genome.wustl.edu	37	16	23197641	23197641	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	16	23197641	23197641	G	A	SNP	SCNN1G	ENST00000300061	human	ensembl	74_37	+1	known	missense	c.49	p.V17M	0.446	NULL	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1G	HGNC	ENSG00000166828	tier1	-	-	72	0	0.00	5	43	89.58
ZNF761	0	genome.wustl.edu	37	19	53960833	53960859	+	RNA	DEL	AATGAGTAGAGCAAACCATCAAGCATT	AATGAGTAGAGCAAACCATCAAGCATT	-			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	AATGAGTAGAGCAAACCATCAAGCATT	AATGAGTAGAGCAAACCATCAAGCATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	19	53960833	53960859	AATGAGTAGAGCAAACCATCAAGCATT	-	DEL	ZNF761	ENST00000334095	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.002:0.010:0.032:0.032:0.002:0.001:0.001:0.002:0.003:0.003:0.004:0.004:0.001:0.002:0.002:0.006:0.007:0.011:0.002:0.000:0.006:0.003:0.000:0.000:0.000:0.001	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336	tier1			NA	NA	NA	NA	NA	NA
CBX8	0	genome.wustl.edu	37	17	77769090	77769090	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	17	77769090	77769090	G	A	SNP	CBX8	ENST00000269385	human	ensembl	74_37	-1	known	missense	c.514	p.R172W	0.036	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570	tier1	-	-	179	0	0.00	226	56	19.79
SEMA6C	0	genome.wustl.edu	37	1	151104667	151104667	+	RNA	SNP	G	G	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	1	151104667	151104667	G	A	SNP	SEMA6C	ENST00000479820	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.936	-	-	-	no_errors	SEMA6C	HGNC	ENSG00000143434	tier1	-	-	11	0	0.00	16	5	23.81
SMARCA2	0	genome.wustl.edu	37	9	2161707	2161707	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	9	2161707	2161707	G	T	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	nonsense	c.4003	p.E1335*	1.000	superfamily_RNaseH-like_dom	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	tier1	-	-	178	1	0.56	188	69	26.85
TCOF1	0	genome.wustl.edu	37	5	149747446	149747446	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	5	149747446	149747446	C	T	SNP	TCOF1	ENST00000451292	human	ensembl	74_37	+1	known	missense	c.344	p.A115V	0.000	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814	tier1	rs200375016	GMAF=0.0005	88	0	0.00	35	26	42.62
ENSG00000264299	0	genome.wustl.edu	37	11	125828487	125828488	+	RNA	INS	-	-	G			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	11	125828487	125828488	-	G	INS	ENSG00000264299	ENST00000582823	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.001	-	-	-	no_errors	RP11-680F20.12	Clone_based_vega_gene	ENSG00000264299	tier1			42	0	0.00	28	3	9.68
ATRX	0	genome.wustl.edu	37	X	76778881	76778883	+	Splice_Site	DEL	TGT	TGT	-			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	X	76778881	76778883	TGT	-	DEL	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	splice_site_del	c.6700-4_6700-2	e31-2	1.000:0.936:0.928	-	-	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1			247	0	0.00	182	37	16.89
TMEM63B	0	genome.wustl.edu	37	6	44122120	44122120	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	6	44122120	44122120	G	A	SNP	TMEM63B	ENST00000259746	human	ensembl	74_37	+1	known	missense	c.2245	p.D749N	0.908	NULL	pfam_DUF221	-	no_errors	TMEM63B	HGNC	ENSG00000137216	tier1	-	-	41	0	0.00	92	19	17.12
FGD2	0	genome.wustl.edu	37	6	36990132	36990132	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	6	36990132	36990132	C	T	SNP	FGD2	ENST00000274963	human	ensembl	74_37	+1	known	missense	c.1444	p.R482W	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_DH-domain,pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD2	HGNC	ENSG00000146192	tier1	-	-	199	1	0.50	238	73	23.40
NUP85	0	genome.wustl.edu	37	17	73228049	73228049	+	Nonsense_Mutation	SNP	T	T	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	17	73228049	73228049	T	A	SNP	NUP85	ENST00000245544	human	ensembl	74_37	+1	known	nonsense	c.1371	p.C457*	0.996	pfam_Nucleoporin_Nup85	pfam_Nucleoporin_Nup85	-	no_errors	NUP85	HGNC	ENSG00000125450	tier1	-	-	41	0	0.00	25	66	72.53
OR2J1	0	genome.wustl.edu	37	6	29068810	29068810	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	6	29068810	29068810	G	T	SNP	OR2J1	ENST00000377171	human	ensembl	74_37	+1	known	missense	c.91	p.V31F	0.827	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2J1	HGNC	ENSG00000204702	tier1	-	-	245	0	0.00	367	64	14.85
PAPPA	0	genome.wustl.edu	37	9	118949745	118949745	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	9	118949745	118949745	G	T	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	missense	c.728	p.S243I	1.000	superfamily_ConA-like_lec_gl_sf,smart_LamG-like	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	tier1	-	-	76	0	0.00	23	35	60.34
COL4A2	0	genome.wustl.edu	37	13	111080930	111080930	+	Silent	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	13	111080930	111080930	C	T	SNP	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	silent	c.477	p.P159	0.034	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	tier1	-	-	144	0	0.00	128	58	31.18
ZNF221	0	genome.wustl.edu	37	19	44470547	44470547	+	Missense_Mutation	SNP	A	A	G			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	19	44470547	44470547	A	G	SNP	ZNF221	ENST00000251269	human	ensembl	74_37	+1	known	missense	c.893	p.Q298R	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF221	HGNC	ENSG00000159905	tier1	-	-	182	0	0.00	131	145	52.54
ADCY5	0	genome.wustl.edu	37	3	123010114	123010114	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	3	123010114	123010114	C	T	SNP	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	missense	c.3173	p.R1058H	1.000	smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	tier1	-	-	82	0	0.00	46	33	41.77
IRF5	0	genome.wustl.edu	37	7	128587352	128587381	+	In_Frame_Del	DEL	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	7	128587352	128587381	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	DEL	IRF5	ENST00000357234	human	ensembl	74_37	+1	known	in_frame_del	c.550_579	p.PPTLRPPTLQ187in_frame_del	0.766:0.707:0.638:0.562:0.538:0.511:0.480:0.444:0.402:0.360:0.317:0.273:0.262:0.251:0.239:0.226:0.213:0.199:0.185:0.170:0.155:0.138:0.122:0.120:0.118:0.116:0.113:0.110:0.107:0.104	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF5	HGNC	ENSG00000128604	tier1			NA	NA	NA	NA	NA	NA
MRPL15	0	genome.wustl.edu	37	8	55047874	55047874	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	8	55047874	55047874	C	T	SNP	MRPL15	ENST00000260102	human	ensembl	74_37	+1	known	missense	c.31	p.R11W	0.000	NULL	pfam_Ribosomal_L18e/L15P,superfamily_Ribosomal_L18e/L15P	-	no_errors	MRPL15	HGNC	ENSG00000137547	tier1	-	-	441	0	0.00	197	169	46.17
TSSC2	0	genome.wustl.edu	37	11	3423884	3423884	+	RNA	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	11	3423884	3423884	C	T	SNP	TSSC2	ENST00000529482	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.441	-	-	-	no_errors	TSSC2	HGNC	ENSG00000223756	tier1	-	-	204	0	0.00	79	69	46.62
RTN1	0	genome.wustl.edu	37	14	60193761	60193761	+	Silent	SNP	C	C	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	14	60193761	60193761	C	A	SNP	RTN1	ENST00000267484	human	ensembl	74_37	-1	known	silent	c.1641	p.T547	0.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN1	HGNC	ENSG00000139970	tier1	-	-	131	0	0.00	96	41	29.93
FBN1	0	genome.wustl.edu	37	15	48752489	48752489	+	Missense_Mutation	SNP	A	A	C			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	15	48752489	48752489	A	C	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.5250	p.S1750R	0.992	superfamily_TB_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	tier1	-	-	36	0	0.00	16	4	20.00
TMPRSS11B	0	genome.wustl.edu	37	4	69107497	69107497	+	Missense_Mutation	SNP	A	A	C			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	4	69107497	69107497	A	C	SNP	TMPRSS11B	ENST00000332644	human	ensembl	74_37	-1	known	missense	c.34	p.W12G	0.012	pirsf_Pept_S1A_HAT/DESC1	pfam_Peptidase_S1,pfam_SEA_dom,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Pept_S1A_HAT/DESC1,pfscan_SEA_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS11B	HGNC	ENSG00000185873	tier1	-	-	113	0	0.00	131	15	10.27
GPR112	0	genome.wustl.edu	37	X	135427331	135427331	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	X	135427331	135427331	C	T	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.1466	p.T489I	0.037	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	tier1	-	-	96	0	0.00	35	36	50.70
WDR11	0	genome.wustl.edu	37	10	122648750	122648751	+	RNA	INS	-	-	TTTTGTTTTGTTTTG			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	10	122648750	122648751	-	TTTTGTTTTGTTTTG	INS	WDR11	ENST00000604509	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024:0.006	-	-	-	no_errors	WDR11	HGNC	ENSG00000120008	tier1			NA	NA	NA	NA	NA	NA
CHD6	0	genome.wustl.edu	37	20	40044280	40044280	+	Splice_Site	SNP	T	T	C			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	20	40044280	40044280	T	C	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	splice_site	c.6487-2	e33-2	1.000	-	-	-	no_errors	CHD6	HGNC	ENSG00000124177	tier1	-	-	33	0	0.00	62	9	12.68
C6orf132	0	genome.wustl.edu	37	6	42075170	42075170	+	Frame_Shift_Del	DEL	C	C	-			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	6	42075170	42075170	C	-	DEL	C6orf132	ENST00000341865	human	ensembl	74_37	-1	putative	frame_shift_del	c.480	p.S161fs	0.105	NULL	NULL	-	no_errors	C6orf132	HGNC	ENSG00000188112	tier1			34	0	0.00	28	3	9.68
CYP2G1P	0	genome.wustl.edu	37	19	41404425	41404425	+	RNA	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	19	41404425	41404425	C	T	SNP	CYP2G1P	ENST00000252909	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CYP2G1P	HGNC	ENSG00000130612	tier1	-	-	154	1	0.65	195	110	36.07
ORC5	0	genome.wustl.edu	37	7	103828167	103828168	+	RNA	INS	-	-	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	7	103828167	103828168	-	A	INS	ORC5	ENST00000485726	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013:0.000	-	-	-	no_errors	ORC5	HGNC	ENSG00000164815	tier1			9	0	0.00	12	4	25.00
DMBT1	0	genome.wustl.edu	37	10	124358313	124358313	+	Missense_Mutation	SNP	A	A	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	10	124358313	124358313	A	T	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	missense	c.2980	p.R994W	0.964	superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908	tier1	-	-	623	0	0.00	270	245	47.39
PEG3	0	genome.wustl.edu	37	19	57328017	57328017	+	Missense_Mutation	SNP	C	C	G			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	19	57328017	57328017	C	G	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.1793	p.R598P	0.011	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	tier1	-	-	103	0	0.00	178	16	8.25
MIR1293	0	genome.wustl.edu	37	12	50627994	50627995	+	RNA	INS	-	-	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	12	50627994	50627995	-	T	INS	MIR1293	ENST00000408677	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.533:0.541	-	-	-	no_errors	MIR1293	HGNC	ENSG00000221604	tier1			74	0	0.00	49	5	9.26
NKX2-5	0	genome.wustl.edu	37	5	172659906	172659908	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	5	172659906	172659908	GGC	-	DEL	NKX2-5	ENST00000329198	human	ensembl	74_37	-1	known	in_frame_del	c.641_639	p.P214in_frame_del	0.987:1.000:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-5	HGNC	ENSG00000183072	tier1			52	0	0.00	40	4	9.09
LOC220729	0	genome.wustl.edu	37	3	197350172	197350172	+	RNA	SNP	T	T	C			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	3	197350172	197350172	T	C	SNP	LOC220729	ENST00000414207	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	AC024560.3	Clone_based_vega_gene	ENSG00000214135	tier1	rs200151765	-	16	0	0.00	6	3	33.33
C2CD5	0	genome.wustl.edu	37	12	22697070	22697070	+	Silent	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	12	22697070	22697070	C	T	SNP	C2CD5	ENST00000333957	human	ensembl	74_37	-1	known	silent	c.15	p.L5	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	C2CD5	HGNC	ENSG00000111731	tier1	-	-	94	0	0.00	40	61	60.40
GTPBP1	0	genome.wustl.edu	37	22	39101991	39101991	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	22	39101991	39101991	G	T	SNP	GTPBP1	ENST00000216044	human	ensembl	74_37	+1	known	missense	c.31	p.D11Y	1.000	NULL	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel	-	no_errors	GTPBP1	HGNC	ENSG00000100226	tier1	-	-	26	0	0.00	15	15	50.00
SCRN3	0	genome.wustl.edu	37	2	175287648	175287648	+	Nonsense_Mutation	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	2	175287648	175287648	C	T	SNP	SCRN3	ENST00000272732	human	ensembl	74_37	+1	known	nonsense	c.790	p.R264*	1.000	NULL	pfam_Peptidase_C69	-	no_errors	SCRN3	HGNC	ENSG00000144306	tier1	-	-	85	0	0.00	4	57	93.44
NFKBIZ	0	genome.wustl.edu	37	3	101576029	101576030	+	Splice_Site	INS	-	-	ACTTTTAGAAAGCTTTAATAACC			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	3	101576029	101576030	-	ACTTTTAGAAAGCTTTAATAACC	INS	NFKBIZ	ENST00000326172	human	ensembl	74_37	+1	known	splice_site_ins	c.1935+2_1935+1	e10+2	1.000:0.000	-	-	-	no_errors	NFKBIZ	HGNC	ENSG00000144802	tier1			NA	NA	NA	NA	NA	NA
PTENP1	0	genome.wustl.edu	37	9	33675550	33675550	+	RNA	SNP	G	G	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	9	33675550	33675550	G	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984	tier1	-	-	114	0	0.00	99	89	47.34
CYP46A1	0	genome.wustl.edu	37	14	100173109	100173109	+	Missense_Mutation	SNP	A	A	G			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	14	100173109	100173109	A	G	SNP	CYP46A1	ENST00000261835	human	ensembl	74_37	+1	known	missense	c.569	p.D190G	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP46A1	HGNC	ENSG00000036530	tier1	-	-	47	0	0.00	18	41	69.49
C2CD5	0	genome.wustl.edu	37	12	22697034	22697034	+	Silent	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	12	22697034	22697034	C	T	SNP	C2CD5	ENST00000333957	human	ensembl	74_37	-1	known	silent	c.51	p.V17	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	C2CD5	HGNC	ENSG00000111731	tier1	-	-	103	0	0.00	36	62	63.27
PPP1R21	0	genome.wustl.edu	37	2	48742386	48742387	+	RNA	INS	-	-	C			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	2	48742386	48742387	-	C	INS	PPP1R21	ENST00000476199	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	PPP1R21	HGNC	ENSG00000162869	tier1			17	0	0.00	6	3	33.33
SSC5D	0	genome.wustl.edu	37	19	56011757	56011768	+	In_Frame_Del	DEL	TGTTAGCACCAC	TGTTAGCACCAC	-			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	TGTTAGCACCAC	TGTTAGCACCAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	19	56011757	56011768	TGTTAGCACCAC	-	DEL	SSC5D	ENST00000389623	human	ensembl	74_37	+1	known	in_frame_del	c.2280_2291	p.VSTT761in_frame_del	0.028:0.017:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001	NULL	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	SSC5D	HGNC	ENSG00000179954	tier1			NA	NA	NA	NA	NA	NA
ICOSLG	0	genome.wustl.edu	37	21	45649509	45649509	+	Silent	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	21	45649509	45649509	C	T	SNP	ICOSLG	ENST00000400379	human	ensembl	74_37	-1	putative	silent	c.1326	p.L442	0.000	NULL	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	ICOSLG	HGNC	ENSG00000160223	tier1	-	-	42	0	0.00	64	9	12.33
ENSG00000227719	0	genome.wustl.edu	37	7	8153701	8153701	+	RNA	SNP	A	A	G			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	7	8153701	8153701	A	G	SNP	ENSG00000227719	ENST00000449931	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC006042.6	Clone_based_vega_gene	ENSG00000227719	tier1	-	-	71	0	0.00	64	57	46.72
NUTM2F	0	genome.wustl.edu	37	9	97087709	97087709	+	Missense_Mutation	SNP	G	G	C			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	9	97087709	97087709	G	C	SNP	NUTM2F	ENST00000253262	human	ensembl	74_37	-1	known	missense	c.524	p.A175G	0.000	NULL	NULL	-	no_errors	NUTM2F	HGNC	ENSG00000130950	tier1	-	-	565	0	0.00	588	54	8.39
MYH2	0	genome.wustl.edu	37	17	10426842	10426842	+	Missense_Mutation	SNP	T	T	C			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	17	10426842	10426842	T	C	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.5443	p.K1815E	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	tier1	-	-	188	0	0.00	272	47	14.73
TRAPPC6B	0	genome.wustl.edu	37	14	39627487	39627487	+	Splice_Site	SNP	A	A	G			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	14	39627487	39627487	A	G	SNP	TRAPPC6B	ENST00000347691	human	ensembl	74_37	-1	known	splice_site	c.267+2	e3+2	1.000	-	-	-	no_errors	TRAPPC6B	HGNC	ENSG00000182400	tier1	-	-	166	0	0.00	138	43	23.76
PCSK5	0	genome.wustl.edu	37	9	78790192	78790192	+	Missense_Mutation	SNP	C	C	G			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	9	78790192	78790192	C	G	SNP	PCSK5	ENST00000376767	human	ensembl	74_37	+1	known	missense	c.2047	p.R683G	0.006	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	tier1	rs200914896	-	13	0	0.00	7	9	56.25
MEP1A	0	genome.wustl.edu	37	6	46766860	46766860	+	Silent	SNP	G	G	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	6	46766860	46766860	G	A	SNP	MEP1A	ENST00000230588	human	ensembl	74_37	+1	known	silent	c.204	p.L68	0.974	pirsf_Pept_M12A_Meprin	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EG-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl_sf,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818	tier1	-	-	158	0	0.00	262	62	19.14
ENSG00000270163	0	genome.wustl.edu	37	14	57267296	57267296	+	RNA	DEL	A	A	-			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	14	57267296	57267296	A	-	DEL	ENSG00000270163	ENST00000602485	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-1085N6.6	Clone_based_vega_gene	ENSG00000270163	tier1			23	0	0.00	14	3	17.65
TMEM35	0	genome.wustl.edu	37	X	100349695	100349695	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	X	100349695	100349695	G	A	SNP	TMEM35	ENST00000372930	human	ensembl	74_37	+1	known	missense	c.254	p.R85H	1.000	NULL	NULL	-	no_errors	TMEM35	HGNC	ENSG00000126950	tier1	-	-	221	0	0.00	91	73	44.51
ZCCHC12	0	genome.wustl.edu	37	X	117959330	117959330	+	Silent	SNP	A	A	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	X	117959330	117959330	A	T	SNP	ZCCHC12	ENST00000310164	human	ensembl	74_37	+1	known	silent	c.123	p.A41	0.996	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460	tier1	-	-	83	0	0.00	31	29	48.33
CSTF2T	0	genome.wustl.edu	37	10	53457702	53457702	+	Silent	SNP	G	G	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	10	53457702	53457702	G	A	SNP	CSTF2T	ENST00000331173	human	ensembl	74_37	-1	known	silent	c.1608	p.V536	0.676	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613	tier1	-	-	175	0	0.00	210	56	21.05
ADNP2	0	genome.wustl.edu	37	18	77896692	77896692	+	Silent	SNP	A	A	G			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	18	77896692	77896692	A	G	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	silent	c.3396	p.*1132	0.133	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544	tier1	-	-	36	0	0.00	148	17	10.30
CELP	0	genome.wustl.edu	37	9	135959920	135959920	+	RNA	SNP	G	G	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	9	135959920	135959920	G	A	SNP	CELP	ENST00000411440	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.858	-	-	-	no_errors	CELP	HGNC	ENSG00000170827	tier1	-	-	43	0	0.00	33	12	26.67
TRIO	0	genome.wustl.edu	37	5	14359550	14359550	+	Silent	SNP	G	G	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	5	14359550	14359550	G	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	silent	c.2301	p.A767	0.964	smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	tier1	-	-	110	0	0.00	87	90	50.56
PCSK5	0	genome.wustl.edu	37	9	78790212	78790212	+	Silent	SNP	A	A	C			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	9	78790212	78790212	A	C	SNP	PCSK5	ENST00000376767	human	ensembl	74_37	+1	known	silent	c.2067	p.I689	0.000	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	tier1	rs62556620	-	9	0	0.00	4	7	63.64
TRHR	0	genome.wustl.edu	37	8	110099856	110099856	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	8	110099856	110099856	G	A	SNP	TRHR	ENST00000311762	human	ensembl	74_37	+1	known	missense	c.115	p.G39S	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_TRH_rcpt_1,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_TRH_rcpt_1,prints_GPCR_Rhodpsn	-	no_errors	TRHR	HGNC	ENSG00000174417	tier1	-	-	158	0	0.00	63	62	49.60
ROR2	0	genome.wustl.edu	37	9	94499672	94499672	+	Splice_Site	SNP	C	C	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	9	94499672	94499672	C	T	SNP	ROR2	ENST00000375708	human	ensembl	74_37	-1	known	splice_site	c.622+1	e5+1	1.000	-	-	-	no_errors	ROR2	HGNC	ENSG00000169071	tier1	-	-	106	0	0.00	83	45	35.16
ANO7	0	genome.wustl.edu	37	2	242147068	242147068	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	2	242147068	242147068	G	A	SNP	ANO7	ENST00000274979	human	ensembl	74_37	+1	known	missense	c.1222	p.A408T	0.854	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205	tier1	rs137878201	-	114	0	0.00	7	104	92.86
CEACAM21	0	genome.wustl.edu	37	19	42085857	42085857	+	Silent	SNP	G	G	A			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	19	42085857	42085857	G	A	SNP	CEACAM21	ENST00000401445	human	ensembl	74_37	+1	known	silent	c.576	p.L192	0.013	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM21	HGNC	ENSG00000007129	tier1	-	-	59	0	0.00	83	56	40.29
GSN-AS1	0	genome.wustl.edu	37	9	124045961	124045974	+	RNA	DEL	ATTCATTCATTCAT	ATTCATTCATTCAT	-			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	ATTCATTCATTCAT	ATTCATTCATTCAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	9	124045961	124045974	ATTCATTCATTCAT	-	DEL	GSN-AS1	ENST00000414544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.050:0.056:0.057:0.054:0.002:0.004:0.004:0.002:0.002:0.002:0.004:0.006:0.003:0.000	-	-	-	no_errors	GSN-AS1	HGNC	ENSG00000235865	tier1			NA	NA	NA	NA	NA	NA
LMO7	0	genome.wustl.edu	37	13	76395653	76395653	+	Nonsense_Mutation	SNP	A	A	T			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	13	76395653	76395653	A	T	SNP	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	nonsense	c.2704	p.K902*	1.000	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153	tier1	-	-	95	0	0.00	8	27	77.14
TMEM8B	0	genome.wustl.edu	37	9	35829952	35829952	+	RNA	SNP	G	G	C			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	9	35829952	35829952	G	C	SNP	TMEM8B	ENST00000472010	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TMEM8B	HGNC	ENSG00000137103	tier1	-	-	19	0	0.00	19	13	40.62
TMEM254	0	genome.wustl.edu	37	10	81841422	81841422	+	RNA	DEL	A	A	-			TCGA-IE-A6BZ-01A-11D-A307-09	TCGA-IE-A6BZ-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	201198d0-2d2c-4d33-9c31-f82d4daf7057	530f54b3-8d78-4d13-9b9d-17390fb27d29	10	81841422	81841422	A	-	DEL	TMEM254	ENST00000463029	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	TMEM254	HGNC	ENSG00000133678	tier1			32	0	0.00	29	3	9.38
