Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
RBM15	0	genome.wustl.edu	37	1	110883860	110883860	+	Frame_Shift_Del	DEL	G	G	-			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	110883860	110883860	G	-	DEL	RBM15	ENST00000369784	human	ensembl	74_37	+1	known	frame_shift_del	c.1833	p.D612fs	0.990	NULL	pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15	HGNC	ENSG00000162775	tier1			40	0	0.00	15	2	11.76
PDE3A	0	genome.wustl.edu	37	12	20799442	20799444	+	In_Frame_Del	DEL	CCA	CCA	-			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	12	20799442	20799444	CCA	-	DEL	PDE3A	ENST00000359062	human	ensembl	74_37	+1	known	in_frame_del	c.2270_2272	p.T758in_frame_del	1.000:1.000:1.000	smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	tier1			48	0	0.00	33	11	25.00
ZNF230	0	genome.wustl.edu	37	19	44514834	44514835	+	Frame_Shift_Ins	INS	-	-	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	19	44514834	44514835	-	C	INS	ZNF230	ENST00000429154	human	ensembl	74_37	+1	known	frame_shift_ins	c.643_644	p.E215fs	0.009:0.003	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF230	HGNC	ENSG00000159882	tier1			136	0	0.00	63	38	37.62
PIP5K1A	0	genome.wustl.edu	37	1	151206962	151206962	+	Missense_Mutation	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	151206962	151206962	G	A	SNP	PIP5K1A	ENST00000368888	human	ensembl	74_37	+1	known	missense	c.929	p.R310H	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1A	HGNC	ENSG00000143398	tier1	-	-	75	0	0.00	77	28	26.67
HELZ2	0	genome.wustl.edu	37	20	62202569	62202569	+	RNA	SNP	A	A	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	20	62202569	62202569	A	C	SNP	HELZ2	ENST00000479540	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	HELZ2	HGNC	ENSG00000130589	tier1	-	-	44	0	0.00	45	4	8.16
ENSG00000261720	0	genome.wustl.edu	37	16	1116295	1116295	+	RNA	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	16	1116295	1116295	C	T	SNP	ENSG00000261720	ENST00000564390	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.319	-	-	-	no_errors	RP11-161M6.5	Clone_based_vega_gene	ENSG00000261720	tier1	-	-	14	0	0.00	6	13	68.42
ECM1	0	genome.wustl.edu	37	1	150483831	150483831	+	RNA	SNP	A	A	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	150483831	150483831	A	T	SNP	ECM1	ENST00000470432	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ECM1	HGNC	ENSG00000143369	tier1	-	-	31	0	0.00	26	11	29.73
ZBTB49	0	genome.wustl.edu	37	4	4322643	4322643	+	Missense_Mutation	SNP	C	C	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	4	4322643	4322643	C	A	SNP	ZBTB49	ENST00000337872	human	ensembl	74_37	+1	known	missense	c.1898	p.P633H	0.999	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB49	HGNC	ENSG00000168826	tier1	-	-	32	0	0.00	29	4	12.12
LINC00842	0	genome.wustl.edu	37	10	47098233	47098233	+	RNA	SNP	G	G	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	10	47098233	47098233	G	T	SNP	LINC00842	ENST00000422732	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.214	-	-	-	no_errors	LINC00842	HGNC	ENSG00000223477	tier1	rs4979705	-	12	0	0.00	4	5	55.56
SHROOM4	0	genome.wustl.edu	37	X	50350728	50350729	+	In_Frame_Ins	INS	-	-	TCC			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	X	50350728	50350729	-	TCC	INS	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	in_frame_ins	c.3414_3413	p.1142in_frame_insE	0.000:0.000	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	tier1			17	0	0.00	17	9	34.62
LOC440905	0	genome.wustl.edu	37	2	130792230	130792230	+	RNA	DEL	A	A	-			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	2	130792230	130792230	A	-	DEL	LOC440905	ENST00000444030	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC018865.8	Clone_based_vega_gene	ENSG00000180178	tier1			23	0	0.00	17	7	29.17
ENSG00000206913	0	genome.wustl.edu	37	11	73963490	73963490	+	RNA	DEL	T	T	-			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	11	73963490	73963490	T	-	DEL	ENSG00000206913	ENST00000384186	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.990	-	-	-	no_errors	SNORA7	RFAM	ENSG00000206913	tier1			22	0	0.00	6	2	25.00
ZNF534	0	genome.wustl.edu	37	19	52938381	52938381	+	Missense_Mutation	SNP	A	A	G			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	19	52938381	52938381	A	G	SNP	ZNF534	ENST00000332323	human	ensembl	74_37	+1	known	missense	c.229	p.R77G	0.000	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633	tier1	-	-	100	0	0.00	78	17	17.89
EHBP1	0	genome.wustl.edu	37	2	63272304	63272304	+	Silent	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	2	63272304	63272304	G	A	SNP	EHBP1	ENST00000263991	human	ensembl	74_37	+1	known	silent	c.3594	p.A1198	0.008	pfam_DUF3585	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504	tier1	-	-	44	0	0.00	39	4	9.30
CCT6P3	0	genome.wustl.edu	37	7	64531307	64531307	+	RNA	SNP	G	G	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	7	64531307	64531307	G	C	SNP	CCT6P3	ENST00000426828	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CCT6P3	HGNC	ENSG00000234585	tier1	-	-	111	0	0.00	63	38	37.62
HPR	0	genome.wustl.edu	37	16	72107693	72107694	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	16	72107693	72107694	GT	-	DEL	HPR	ENST00000228226	human	ensembl	74_37	+1	known	frame_shift_del	c.19_20	p.C10fs	0.010:0.011	NULL	pirsf_Haptoglobin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	HPR	HGNC	ENSG00000261701	tier1			50	0	0.00	57	6	9.52
ENSG00000267749	0	genome.wustl.edu	37	19	2642868	2642868	+	RNA	SNP	C	C	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	19	2642868	2642868	C	A	SNP	ENSG00000267749	ENST00000587894	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	CTC-265F19.1	Clone_based_vega_gene	ENSG00000267749	tier1	-	-	58	0	0.00	36	5	12.20
KIF20A	0	genome.wustl.edu	37	5	137520246	137520246	+	Missense_Mutation	SNP	T	T	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	5	137520246	137520246	T	A	SNP	KIF20A	ENST00000394894	human	ensembl	74_37	+1	known	missense	c.1564	p.S522T	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20A	HGNC	ENSG00000112984	tier1	-	-	54	0	0.00	30	17	36.17
SMARCAL1	0	genome.wustl.edu	37	2	217279860	217279860	+	Nonsense_Mutation	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	2	217279860	217279860	C	T	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	nonsense	c.433	p.Q145*	0.003	NULL	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375	tier1	-	-	61	0	0.00	13	25	65.79
STARD9	0	genome.wustl.edu	37	15	42983268	42983268	+	Silent	SNP	A	A	G			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	15	42983268	42983268	A	G	SNP	STARD9	ENST00000290607	human	ensembl	74_37	+1	known	silent	c.9492	p.L3164	0.006	NULL	pfam_Kinesin_motor_dom,pfam_START_lipid-bd_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_START_lipid-bd_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	STARD9	HGNC	ENSG00000159433	tier1	-	-	50	0	0.00	41	4	8.89
PCMTD1	0	genome.wustl.edu	37	8	52732893	52732894	+	RNA	INS	-	-	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	8	52732893	52732894	-	C	INS	PCMTD1	ENST00000519559	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.206:0.021	-	-	-	no_errors	PCMTD1	HGNC	ENSG00000168300	tier1			52	0	0.00	65	8	10.96
CSN2	0	genome.wustl.edu	37	4	70823302	70823302	+	Missense_Mutation	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	4	70823302	70823302	G	A	SNP	CSN2	ENST00000353151	human	ensembl	74_37	-1	known	missense	c.365	p.T122M	0.000	pirsf_Casein_beta	pfam_Casein,pirsf_Casein_beta	-	no_errors	CSN2	HGNC	ENSG00000135222	tier1	rs140189537	-	57	0	0.00	18	18	50.00
SGPL1	0	genome.wustl.edu	37	10	72629574	72629574	+	Missense_Mutation	SNP	G	G	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	10	72629574	72629574	G	T	SNP	SGPL1	ENST00000373202	human	ensembl	74_37	+1	known	missense	c.730	p.A244S	1.000	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SGPL1	HGNC	ENSG00000166224	tier1	-	-	31	0	0.00	24	3	11.11
MMP16	0	genome.wustl.edu	37	8	89128891	89128891	+	Missense_Mutation	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	8	89128891	89128891	G	A	SNP	MMP16	ENST00000286614	human	ensembl	74_37	-1	known	missense	c.928	p.R310C	1.000	pirsf_Pept_M10A_Metazoans	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP16	HGNC	ENSG00000156103	tier1	rs202054317	GMAF=0.0005	99	0	0.00	65	31	32.29
MTMR4	0	genome.wustl.edu	37	17	56584179	56584179	+	Silent	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	17	56584179	56584179	G	A	SNP	MTMR4	ENST00000323456	human	ensembl	74_37	-1	known	silent	c.916	p.L306	1.000	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389	tier1	-	-	24	0	0.00	13	4	23.53
GABRB3	0	genome.wustl.edu	37	15	26793096	26793096	+	Silent	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	15	26793096	26793096	C	T	SNP	GABRB3	ENST00000299267	human	ensembl	74_37	-1	known	silent	c.1266	p.P422	0.973	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB3	HGNC	ENSG00000166206	tier1	-	-	40	0	0.00	29	9	23.68
NUDT10	0	genome.wustl.edu	37	X	51076293	51076293	+	Missense_Mutation	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	X	51076293	51076293	C	T	SNP	NUDT10	ENST00000356450	human	ensembl	74_37	+1	known	missense	c.476	p.S159L	0.001	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT10	HGNC	ENSG00000122824	tier1	rs140448074	-	51	0	0.00	22	23	51.11
ITGB4	0	genome.wustl.edu	37	17	73748323	73748323	+	Missense_Mutation	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	17	73748323	73748323	C	T	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	missense	c.3862	p.L1288F	1.000	pirsf_Integrin_bsu-4,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470	tier1	-	-	23	0	0.00	12	6	33.33
PCDH9	0	genome.wustl.edu	37	13	67800272	67800282	+	Frame_Shift_Del	DEL	AAGCGTGTGCA	AAGCGTGTGCA	-			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	AAGCGTGTGCA	AAGCGTGTGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	13	67800272	67800282	AAGCGTGTGCA	-	DEL	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	frame_shift_del	c.2301_2291	p.L764fs	0.015:0.996:0.997:0.267:0.988:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	tier1			NA	NA	NA	NA	NA	NA
CDK12	0	genome.wustl.edu	37	17	37627390	37627390	+	Silent	SNP	A	A	G			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	17	37627390	37627390	A	G	SNP	CDK12	ENST00000447079	human	ensembl	74_37	+1	known	silent	c.1305	p.V435	0.931	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	tier1	-	-	32	0	0.00	28	6	17.65
LAMC1	0	genome.wustl.edu	37	1	183094669	183094669	+	Missense_Mutation	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	183094669	183094669	G	A	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	missense	c.2785	p.G929R	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	tier1	-	-	106	0	0.00	172	20	10.42
C11orf44	0	genome.wustl.edu	37	11	130542983	130542983	+	Missense_Mutation	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	11	130542983	130542983	C	T	SNP	C11orf44	ENST00000317019	human	ensembl	74_37	+1	putative	missense	c.110	p.S37F	0.001	NULL	NULL	-	no_errors	C11orf44	HGNC	ENSG00000175728	tier1	-	-	37	0	0.00	18	17	48.57
TNR	0	genome.wustl.edu	37	1	175325480	175325480	+	Silent	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	175325480	175325480	G	A	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	silent	c.3093	p.G1031	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	tier1	-	-	81	0	0.00	120	11	8.40
OR6K6	0	genome.wustl.edu	37	1	158725397	158725397	+	Silent	SNP	C	C	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	158725397	158725397	C	A	SNP	OR6K6	ENST00000368144	human	ensembl	74_37	+1	known	silent	c.792	p.A264	0.308	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433	tier1	-	-	113	0	0.00	119	44	26.99
PRPF3	0	genome.wustl.edu	37	1	150315720	150315726	+	RNA	DEL	AAAAAAT	AAAAAAT	-			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	AAAAAAT	AAAAAAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	150315720	150315726	AAAAAAT	-	DEL	PRPF3	ENST00000493553	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001:0.000:0.001:0.000:0.001:0.001	-	-	-	no_errors	PRPF3	HGNC	ENSG00000117360	tier1			NA	NA	NA	NA	NA	NA
NBPF22P	0	genome.wustl.edu	37	5	85592265	85592265	+	RNA	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	5	85592265	85592265	G	A	SNP	NBPF22P	ENST00000590707	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NBPF22P	HGNC	ENSG00000205449	tier1	-	-	112	0	0.00	65	48	42.11
DCAF17	0	genome.wustl.edu	37	2	172325408	172325409	+	Frame_Shift_Ins	INS	-	-	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	2	172325408	172325409	-	T	INS	DCAF17	ENST00000375255	human	ensembl	74_37	+1	known	frame_shift_ins	c.849_850	p.L283fs	0.959:0.976	NULL	NULL	-	no_errors	DCAF17	HGNC	ENSG00000115827	tier1			63	0	0.00	42	12	22.22
SLC6A7	0	genome.wustl.edu	37	5	149583220	149583236	+	Frame_Shift_Del	DEL	CCTGGCCCAGGCCCTGG	CCTGGCCCAGGCCCTGG	-			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	CCTGGCCCAGGCCCTGG	CCTGGCCCAGGCCCTGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	5	149583220	149583236	CCTGGCCCAGGCCCTGG	-	DEL	SLC6A7	ENST00000230671	human	ensembl	74_37	+1	known	frame_shift_del	c.1098_1094	p.A366fs	0.234:0.112:0.122:0.447:0.481:0.986:0.995:0.993:1.000:1.000:1.000:1.000:1.000:1.000:0.155:1.000:1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A7	HGNC	ENSG00000011083	tier1			NA	NA	NA	NA	NA	NA
VWF	0	genome.wustl.edu	37	12	6143854	6143858	+	Frame_Shift_Del	DEL	CTGCA	CTGCA	-			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	CTGCA	CTGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	12	6143854	6143858	CTGCA	-	DEL	VWF	ENST00000261405	human	ensembl	74_37	-1	known	frame_shift_del	c.2685_2681	p.V894fs	1.000:1.000:1.000:0.796:0.801	pirsf_VWF,pfam_VWF_type-D,smart_VWC_out,smart_VWF_type-D	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	tier1			NA	NA	NA	NA	NA	NA
ADORA3	0	genome.wustl.edu	37	1	112045696	112045696	+	Missense_Mutation	SNP	G	G	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	112045696	112045696	G	T	SNP	ADORA3	ENST00000369716	human	ensembl	74_37	-1	known	missense	c.281	p.T94N	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Adeno_A3_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Adeno_A3_rcpt,prints_GPCR_Rhodpsn	-	no_errors	ADORA3	HGNC	ENSG00000121933	tier1	-	-	68	0	0.00	37	4	9.76
ZNF454	0	genome.wustl.edu	37	5	178373906	178373906	+	Missense_Mutation	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	5	178373906	178373906	G	A	SNP	ZNF454	ENST00000320129	human	ensembl	74_37	+1	known	missense	c.169	p.G57R	1.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF454	HGNC	ENSG00000178187	tier1	-	-	50	0	0.00	34	22	39.29
GOLGA6D	0	genome.wustl.edu	37	15	75585465	75585465	+	Missense_Mutation	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	15	75585465	75585465	C	T	SNP	GOLGA6D	ENST00000434739	human	ensembl	74_37	+1	known	missense	c.1553	p.T518M	0.000	NULL	NULL	-	no_errors	GOLGA6D	HGNC	ENSG00000140478	tier1	-	-	100	0	0.00	63	13	17.11
MAMDC4	0	genome.wustl.edu	37	9	139750925	139750925	+	Missense_Mutation	SNP	G	G	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	9	139750925	139750925	G	T	SNP	MAMDC4	ENST00000445819	human	ensembl	74_37	+1	known	missense	c.1855	p.V619F	0.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	MAMDC4	HGNC	ENSG00000177943	tier1	rs191106356	GMAF=0.0005	70	0	0.00	35	17	32.69
RAD18	0	genome.wustl.edu	37	3	8981242	8981242	+	Missense_Mutation	SNP	T	T	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	3	8981242	8981242	T	C	SNP	RAD18	ENST00000264926	human	ensembl	74_37	-1	known	missense	c.700	p.R234G	0.932	NULL	pfam_SAP_dom,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_Rad18_put,smart_SAP_dom,pfscan_Znf_RING,pfscan_SAP_dom	-	no_errors	RAD18	HGNC	ENSG00000070950	tier1	-	-	88	0	0.00	63	29	31.52
PLCE1	0	genome.wustl.edu	37	10	96058263	96058263	+	Silent	SNP	C	C	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	10	96058263	96058263	C	A	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	silent	c.5295	p.A1765	1.000	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	tier1	-	-	49	0	0.00	26	14	35.00
SLC19A1	0	genome.wustl.edu	37	21	46951894	46951894	+	Nonsense_Mutation	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	21	46951894	46951894	G	A	SNP	SLC19A1	ENST00000311124	human	ensembl	74_37	-1	known	nonsense	c.358	p.Q120*	1.000	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A1	HGNC	ENSG00000173638	tier1	-	-	30	0	0.00	14	4	22.22
LRRC59	0	genome.wustl.edu	37	17	48460388	48460388	+	Missense_Mutation	SNP	C	C	G			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	17	48460388	48460388	C	G	SNP	LRRC59	ENST00000225972	human	ensembl	74_37	-1	known	missense	c.885	p.E295D	0.997	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC59	HGNC	ENSG00000108829	tier1	-	-	53	0	0.00	37	17	31.48
WWC1	0	genome.wustl.edu	37	5	167894930	167894930	+	Missense_Mutation	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	5	167894930	167894930	G	A	SNP	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	missense	c.3236	p.G1079D	1.000	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC1	HGNC	ENSG00000113645	tier1	-	-	35	0	0.00	12	7	35.00
ERAP1	0	genome.wustl.edu	37	5	96098915	96098915	+	Missense_Mutation	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	5	96098915	96098915	C	T	SNP	ERAP1	ENST00000296754	human	ensembl	74_37	-1	known	missense	c.2836	p.A946T	0.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP1	HGNC	ENSG00000164307	tier1	-	-	46	0	0.00	41	33	44.59
ATR	0	genome.wustl.edu	37	3	142185195	142185195	+	Missense_Mutation	SNP	A	A	G			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	3	142185195	142185195	A	G	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	missense	c.6868	p.W2290R	1.000	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	tier1	-	-	39	0	0.00	36	20	35.71
DDX19B	0	genome.wustl.edu	37	16	70363935	70363935	+	Silent	SNP	G	G	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	16	70363935	70363935	G	T	SNP	DDX19B	ENST00000288071	human	ensembl	74_37	+1	known	silent	c.987	p.G329	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX19B	HGNC	ENSG00000157349	tier1	-	-	103	0	0.00	66	28	29.79
BICD1	0	genome.wustl.edu	37	12	32369245	32369245	+	Missense_Mutation	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	12	32369245	32369245	C	T	SNP	BICD1	ENST00000281474	human	ensembl	74_37	+1	known	missense	c.278	p.T93M	1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC_like_C_dom	-	no_errors	BICD1	HGNC	ENSG00000151746	tier1	-	-	74	0	0.00	39	19	32.20
SAP130	0	genome.wustl.edu	37	2	128700080	128700080	+	Missense_Mutation	SNP	A	A	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	2	128700080	128700080	A	C	SNP	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	missense	c.3011	p.L1004R	1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715	tier1	-	-	94	0	0.00	61	29	32.22
RPTN	0	genome.wustl.edu	37	1	152128339	152128339	+	Missense_Mutation	SNP	A	A	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	152128339	152128339	A	T	SNP	RPTN	ENST00000316073	human	ensembl	74_37	-1	known	missense	c.1236	p.S412R	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	RPTN	HGNC	ENSG00000215853	tier1	-	-	387	0	0.00	370	146	28.24
YWHAB	0	genome.wustl.edu	37	20	43532648	43532648	+	Silent	SNP	A	A	G			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	20	43532648	43532648	A	G	SNP	YWHAB	ENST00000353703	human	ensembl	74_37	+1	known	silent	c.315	p.K105	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAB	HGNC	ENSG00000166913	tier1	-	-	65	0	0.00	41	35	46.05
LOC101929290	0	genome.wustl.edu	37	8	11177509	11177509	+	RNA	SNP	C	C	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	8	11177509	11177509	C	A	SNP	LOC101929290	ENST00000498997	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AF131216.6	Clone_based_vega_gene	ENSG00000246477	tier1	-	-	22	0	0.00	11	6	35.29
POTEF	0	genome.wustl.edu	37	2	130832919	130832919	+	Missense_Mutation	SNP	A	A	G			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	2	130832919	130832919	A	G	SNP	POTEF	ENST00000357462	human	ensembl	74_37	-1	known	missense	c.2126	p.V709A	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEF	HGNC	ENSG00000196604	tier1	-	-	182	0	0.00	117	57	32.76
FCRL1	0	genome.wustl.edu	37	1	157772364	157772364	+	Missense_Mutation	SNP	G	G	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	157772364	157772364	G	C	SNP	FCRL1	ENST00000368176	human	ensembl	74_37	-1	known	missense	c.410	p.A137G	0.002	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL1	HGNC	ENSG00000163534	tier1	-	-	43	0	0.00	56	15	21.13
SYNJ2	0	genome.wustl.edu	37	6	158490642	158490642	+	Missense_Mutation	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	6	158490642	158490642	C	T	SNP	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	missense	c.1877	p.S626L	0.994	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269	tier1	-	-	106	0	0.00	81	39	32.50
SP4	0	genome.wustl.edu	37	7	21469742	21469742	+	Missense_Mutation	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	7	21469742	21469742	C	T	SNP	SP4	ENST00000222584	human	ensembl	74_37	+1	known	missense	c.959	p.S320F	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP4	HGNC	ENSG00000105866	tier1	-	-	97	0	0.00	25	36	59.02
OR12D2	0	genome.wustl.edu	37	6	29365079	29365079	+	Silent	SNP	G	G	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	6	29365079	29365079	G	T	SNP	OR12D2	ENST00000383555	human	ensembl	74_37	+1	known	silent	c.603	p.T201	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR12D2	HGNC	ENSG00000168787	tier1	-	-	57	0	0.00	14	22	61.11
PTPN22	0	genome.wustl.edu	37	1	114372223	114372223	+	Silent	SNP	T	T	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	114372223	114372223	T	A	SNP	PTPN22	ENST00000359785	human	ensembl	74_37	-1	known	silent	c.2241	p.T747	1.000	pirsf_Non-rcpt_Tyr_Pase_8/22	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	tier1	-	-	74	0	0.00	20	21	51.22
NEB	0	genome.wustl.edu	37	2	152426886	152426886	+	Silent	SNP	A	A	G			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	2	152426886	152426886	A	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.17139	p.H5713	0.065	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091	tier1	-	-	68	0	0.00	44	25	36.23
SAA3P	0	genome.wustl.edu	37	11	18134251	18134251	+	RNA	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	11	18134251	18134251	C	T	SNP	SAA3P	ENST00000534768	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAA3P	HGNC	ENSG00000166787	tier1	-	-	66	0	0.00	32	20	38.46
VWF	0	genome.wustl.edu	37	12	6143852	6143852	+	Splice_Site	DEL	A	A	-			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	12	6143852	6143852	A	-	DEL	VWF	ENST00000261405	human	ensembl	74_37	-1	known	splice_site_del	c.2685+2	e19+2	1.000	-	-	-	no_errors	VWF	HGNC	ENSG00000110799	tier1			104	0	0.00	77	20	20.62
TXNRD2	0	genome.wustl.edu	37	22	19882492	19882493	+	RNA	INS	-	-	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	22	19882492	19882493	-	A	INS	TXNRD2	ENST00000491939	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.022:0.027	-	-	-	no_errors	TXNRD2	HGNC	ENSG00000184470	tier1			20	0	0.00	7	4	36.36
ENSG00000268530	0	genome.wustl.edu	37	19	48968879	48968879	+	RNA	DEL	T	T	-			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	19	48968879	48968879	T	-	DEL	ENSG00000268530	ENST00000593476	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTC-273B12.5	Clone_based_vega_gene	ENSG00000268530	tier1			52	0	0.00	44	5	10.20
RSPH1	0	genome.wustl.edu	37	21	43905819	43905819	+	Missense_Mutation	SNP	T	T	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	21	43905819	43905819	T	C	SNP	RSPH1	ENST00000291536	human	ensembl	74_37	-1	known	missense	c.461	p.H154R	1.000	smart_MORN	pfam_MORN,smart_MORN	-	no_errors	RSPH1	HGNC	ENSG00000160188	tier1	-	-	47	0	0.00	21	20	48.78
IGF2BP1	0	genome.wustl.edu	37	17	47117380	47117380	+	Missense_Mutation	SNP	A	A	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	17	47117380	47117380	A	T	SNP	IGF2BP1	ENST00000290341	human	ensembl	74_37	+1	known	missense	c.745	p.T249S	0.998	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP1	HGNC	ENSG00000159217	tier1	-	-	34	0	0.00	24	11	31.43
SNORD3D	0	genome.wustl.edu	37	17	19015575	19015575	+	RNA	SNP	T	T	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	17	19015575	19015575	T	C	SNP	SNORD3D	ENST00000573866	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	SNORD3D	HGNC	ENSG00000262202	tier1	-	-	11	0	0.00	12	10	45.45
CATSPERD	0	genome.wustl.edu	37	19	5745969	5745979	+	Frame_Shift_Del	DEL	CTGTCTTTTGA	CTGTCTTTTGA	-			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	CTGTCTTTTGA	CTGTCTTTTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	19	5745969	5745979	CTGTCTTTTGA	-	DEL	CATSPERD	ENST00000381624	human	ensembl	74_37	+1	known	frame_shift_del	c.703_713	p.S236fs	0.018:0.019:0.007:0.005:0.038:0.040:0.055:0.053:0.027:0.013:0.011	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	CATSPERD	HGNC	ENSG00000174898	tier1			NA	NA	NA	NA	NA	NA
ALMS1	0	genome.wustl.edu	37	2	73676394	73676394	+	Missense_Mutation	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	2	73676394	73676394	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.2737	p.P913S	0.002	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	tier1	-	-	28	0	0.00	41	10	19.61
CARNS1	0	genome.wustl.edu	37	11	67191267	67191267	+	Missense_Mutation	SNP	T	T	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	11	67191267	67191267	T	C	SNP	CARNS1	ENST00000445895	human	ensembl	74_37	+1	known	missense	c.2048	p.V683A	1.000	pfscan_ATP-grasp	superfamily_PreATP-grasp_dom,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508	tier1	-	-	30	0	0.00	8	13	61.90
FAM21A	0	genome.wustl.edu	37	10	51829380	51829380	+	Missense_Mutation	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	10	51829380	51829380	G	A	SNP	FAM21A	ENST00000282633	human	ensembl	74_37	+1	known	missense	c.200	p.G67E	1.000	NULL	NULL	-	no_errors	FAM21A	HGNC	ENSG00000099290	tier1	-	-	113	0	0.00	68	21	23.60
ZNF141	0	genome.wustl.edu	37	4	376791	376791	+	RNA	SNP	C	C	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	4	376791	376791	C	A	SNP	ZNF141	ENST00000579770	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.089	-	-	-	no_errors	ZNF141	HGNC	ENSG00000131127	tier1	-	-	17	0	0.00	18	8	30.77
NFASC	0	genome.wustl.edu	37	1	204985815	204985815	+	RNA	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	204985815	204985815	G	A	SNP	NFASC	ENST00000495396	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.031	-	-	-	no_errors	NFASC	HGNC	ENSG00000163531	tier1	-	-	48	0	0.00	42	19	31.15
PAPPA2	0	genome.wustl.edu	37	1	176668407	176668407	+	Missense_Mutation	SNP	T	T	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	176668407	176668407	T	C	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.2918	p.F973S	1.000	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	tier1	-	-	36	0	0.00	64	21	24.71
ATXN3L	0	genome.wustl.edu	37	X	13337121	13337121	+	Silent	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	X	13337121	13337121	G	A	SNP	ATXN3L	ENST00000380622	human	ensembl	74_37	-1	known	silent	c.933	p.H311	0.001	prints_Josephin	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,prints_Josephin,pfscan_Josephin,pfscan_Ubiquitin-int_motif	-	no_errors	ATXN3L	HGNC	ENSG00000123594	tier1	-	-	148	0	0.00	90	28	23.73
LSR	0	genome.wustl.edu	37	19	35758744	35758744	+	Silent	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	19	35758744	35758744	G	A	SNP	LSR	ENST00000361790	human	ensembl	74_37	+1	known	silent	c.1932	p.R644	0.991	NULL	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LSR	HGNC	ENSG00000105699	tier1	-	-	103	0	0.00	53	13	19.70
PPIL6	0	genome.wustl.edu	37	6	109748056	109748056	+	Missense_Mutation	SNP	C	C	G			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	6	109748056	109748056	C	G	SNP	PPIL6	ENST00000521072	human	ensembl	74_37	-1	known	missense	c.625	p.G209R	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL6	HGNC	ENSG00000185250	tier1	-	-	43	0	0.00	32	16	33.33
HYDIN	0	genome.wustl.edu	37	16	71113818	71113818	+	Missense_Mutation	SNP	G	G	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	16	71113818	71113818	G	T	SNP	HYDIN	ENST00000448089	human	ensembl	74_37	-1	known	missense	c.1708	p.P570T	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	tier1	-	-	28	0	0.00	9	7	43.75
XYLT2	0	genome.wustl.edu	37	17	48434025	48434025	+	Missense_Mutation	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	17	48434025	48434025	G	A	SNP	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	missense	c.1636	p.G546S	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532	tier1	-	-	27	0	0.00	16	7	30.43
MIR3689B	0	genome.wustl.edu	37	9	137742041	137742041	+	RNA	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	9	137742041	137742041	G	A	SNP	MIR3689B	ENST00000581772	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR3689B	HGNC	ENSG00000264163	tier1	rs35679521	-	69	0	0.00	61	9	12.68
DUSP27	0	genome.wustl.edu	37	1	167097466	167097466	+	Missense_Mutation	SNP	G	G	A			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	1	167097466	167097466	G	A	SNP	DUSP27	ENST00000271385	human	ensembl	74_37	+1	known	missense	c.3098	p.R1033Q	0.989	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	tier1	-	-	30	0	0.00	30	8	21.05
COL6A3	0	genome.wustl.edu	37	2	238232753	238232754	+	RNA	INS	-	-	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	2	238232753	238232754	-	C	INS	COL6A3	ENST00000473258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.025:0.031	-	-	-	no_errors	COL6A3	HGNC	ENSG00000163359	tier1			72	0	0.00	32	23	41.82
DST	0	genome.wustl.edu	37	6	56472778	56472778	+	Silent	SNP	C	C	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	6	56472778	56472778	C	T	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.6549	p.G2183	0.237	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914	tier1	-	-	47	0	0.00	14	19	57.58
TTN	0	genome.wustl.edu	37	2	179469727	179469727	+	Missense_Mutation	SNP	G	G	T			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	2	179469727	179469727	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.46473	p.H15491Q	0.044	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	54	0	0.00	32	12	27.27
ATM	0	genome.wustl.edu	37	11	108199905	108199905	+	Missense_Mutation	SNP	T	T	C			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	11	108199905	108199905	T	C	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.7247	p.L2416P	1.000	pfam_PIK-rel_kinase_FAT,superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	tier1	-	-	36	0	0.00	17	23	57.50
AMACR	0	genome.wustl.edu	37	5	34005864	34005864	+	Missense_Mutation	SNP	A	A	G			TCGA-IW-A3M6-01A-11D-A21Q-09	TCGA-IW-A3M6-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8529e1a2-7633-4494-b732-fcc8c189c723	a594b20f-78f1-4df9-a48b-24425afb78c3	5	34005864	34005864	A	G	SNP	AMACR	ENST00000335606	human	ensembl	74_37	-1	known	missense	c.388	p.S130P	1.000	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	AMACR	HGNC	ENSG00000242110	tier1	-	-	17	0	0.00	23	5	17.24
