Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NEMF	0	genome.wustl.edu	37	14	50295796	50295796	+	Missense_Mutation	SNP	G	G	C			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	14	50295796	50295796	G	C	SNP	NEMF	ENST00000298310	human	ensembl	74_37	-1	known	missense	c.1208	p.T403R	1.000	pfam_Fibro-bd_N	pfam_Fibro-bd_N,pfam_DUF3441,pfam_DUF814,superfamily_FlgN-like_dom	-	no_errors	NEMF	HGNC	ENSG00000165525	tier1	-	-	35	0	0.00	2	12	85.71
PDE4DIP	0	genome.wustl.edu	37	1	145039821	145039821	+	RNA	SNP	C	C	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	1	145039821	145039821	C	A	SNP	PDE4DIP	ENST00000485062	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	tier1	rs7554603	-	18	0	0.00	14	5	26.32
FANCD2	0	genome.wustl.edu	37	3	10091084	10091084	+	Silent	SNP	T	T	C			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	3	10091084	10091084	T	C	SNP	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	silent	c.1440	p.H480	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	tier1	-	-	194	0	0.00	67	10	12.99
WNT5B	0	genome.wustl.edu	37	12	1755193	1755193	+	Silent	SNP	C	C	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	12	1755193	1755193	C	T	SNP	WNT5B	ENST00000310594	human	ensembl	74_37	+1	known	silent	c.855	p.P285	0.016	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5B	HGNC	ENSG00000111186	tier1	-	-	58	0	0.00	31	23	41.82
TRIOBP	0	genome.wustl.edu	37	22	38131171	38131171	+	Missense_Mutation	SNP	G	G	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	22	38131171	38131171	G	A	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.4828	p.G1610R	0.067	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	tier1	-	-	43	0	0.00	23	18	42.86
FAM9B	0	genome.wustl.edu	37	X	8997396	8997396	+	Silent	SNP	G	G	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	X	8997396	8997396	G	A	SNP	FAM9B	ENST00000327220	human	ensembl	74_37	-1	known	silent	c.345	p.D115	0.000	pfam_Cor1/Xlr/Xmr	pfam_Cor1/Xlr/Xmr	-	no_errors	FAM9B	HGNC	ENSG00000177138	tier1	rs150312431	-	67	0	0.00	33	19	36.54
PROSER1	0	genome.wustl.edu	37	13	39598657	39598657	+	Missense_Mutation	SNP	T	T	G			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	13	39598657	39598657	T	G	SNP	PROSER1	ENST00000352251	human	ensembl	74_37	-1	known	missense	c.517	p.N173H	0.989	NULL	NULL	-	no_errors	PROSER1	HGNC	ENSG00000120685	tier1	-	-	41	0	0.00	7	30	81.08
FAM122B	0	genome.wustl.edu	37	X	133922773	133922773	+	Missense_Mutation	SNP	C	C	G			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	X	133922773	133922773	C	G	SNP	FAM122B	ENST00000343004	human	ensembl	74_37	-1	known	missense	c.422	p.R141T	1.000	NULL	NULL	-	no_errors	FAM122B	HGNC	ENSG00000156504	tier1	-	-	56	0	0.00	37	24	39.34
ANKRD50	0	genome.wustl.edu	37	4	125593642	125593642	+	Nonsense_Mutation	SNP	T	T	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	4	125593642	125593642	T	A	SNP	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	nonsense	c.790	p.K264*	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458	tier1	-	-	28	0	0.00	23	16	40.00
ARNT	0	genome.wustl.edu	37	1	150804195	150804195	+	RNA	SNP	A	A	G			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	1	150804195	150804195	A	G	SNP	ARNT	ENST00000468970	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	ARNT	HGNC	ENSG00000143437	tier1	-	-	37	0	0.00	22	17	43.59
OR2T8	0	genome.wustl.edu	37	1	248084781	248084781	+	Silent	SNP	G	G	C			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	1	248084781	248084781	G	C	SNP	OR2T8	ENST00000319968	human	ensembl	74_37	+1	known	silent	c.462	p.G154	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462	tier1	rs150530326	-	18	0	0.00	16	7	30.43
PHKA2	0	genome.wustl.edu	37	X	18915280	18915280	+	Splice_Site	DEL	C	C	-			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	X	18915280	18915280	C	-	DEL	PHKA2	ENST00000379942	human	ensembl	74_37	-1	known	splice_site_del	c.3282+1	e30+1	1.000	-	-	-	no_errors	PHKA2	HGNC	ENSG00000044446	tier1			62	0	0.00	32	40	55.56
ENSG00000230239	0	genome.wustl.edu	37	1	17183487	17183487	+	RNA	SNP	A	A	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	1	17183487	17183487	A	T	SNP	ENSG00000230239	ENST00000414128	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-108M9.2	Clone_based_vega_gene	ENSG00000230239	tier1	rs202228202	-	27	0	0.00	18	7	28.00
OR8D1	0	genome.wustl.edu	37	11	124180329	124180329	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	11	124180329	124180329	C	A	SNP	OR8D1	ENST00000357821	human	ensembl	74_37	-1	known	missense	c.334	p.G112C	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	tier1	-	-	63	0	0.00	38	27	41.54
TIMELESS	0	genome.wustl.edu	37	12	56827326	56827326	+	Missense_Mutation	SNP	T	T	C			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	12	56827326	56827326	T	C	SNP	TIMELESS	ENST00000553532	human	ensembl	74_37	-1	known	missense	c.362	p.K121R	1.000	pfam_Timeless	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602	tier1	-	-	29	0	0.00	3	13	81.25
ZBTB3	0	genome.wustl.edu	37	11	62520110	62520110	+	Nonsense_Mutation	SNP	G	G	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	11	62520110	62520110	G	A	SNP	ZBTB3	ENST00000394807	human	ensembl	74_37	-1	known	nonsense	c.1177	p.Q393*	0.008	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB3	HGNC	ENSG00000185670	tier1	-	-	37	0	0.00	22	13	37.14
POM121L2	0	genome.wustl.edu	37	6	27278742	27278742	+	Missense_Mutation	SNP	G	G	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	6	27278742	27278742	G	A	SNP	POM121L2	ENST00000444565	human	ensembl	74_37	-1	known	missense	c.1208	p.P403L	0.001	NULL	NULL	-	no_errors	POM121L2	HGNC	ENSG00000158553	tier1	-	-	64	0	0.00	44	17	27.87
SCN1A	0	genome.wustl.edu	37	2	166854673	166854673	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	2	166854673	166854673	G	T	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.4351	p.P1451T	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	tier1	-	-	36	0	0.00	28	13	30.95
HDGFRP2	0	genome.wustl.edu	37	19	4499633	4499647	+	In_Frame_Del	DEL	AGCTGGCCGGGGAGG	AGCTGGCCGGGGAGG	-			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	AGCTGGCCGGGGAGG	AGCTGGCCGGGGAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	19	4499633	4499647	AGCTGGCCGGGGAGG	-	DEL	HDGFRP2	ENST00000301284	human	ensembl	74_37	+1	known	in_frame_del	c.1721_1735	p.EELAG578in_frame_del	0.074:0.085:0.097:0.108:0.119:0.130:0.141:0.151:0.162:0.172:0.183:0.193:0.203:0.213:0.223	NULL	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	HDGFRP2	Uniprot_gn	ENSG00000167674	tier1			NA	NA	NA	NA	NA	NA
ELL3	0	genome.wustl.edu	37	15	44067551	44067551	+	Missense_Mutation	SNP	G	G	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	15	44067551	44067551	G	A	SNP	ELL3	ENST00000319359	human	ensembl	74_37	-1	known	missense	c.598	p.P200S	0.982	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL3	HGNC	ENSG00000128886	tier1	-	-	21	0	0.00	2	18	90.00
RELN	0	genome.wustl.edu	37	7	103251252	103251252	+	Missense_Mutation	SNP	T	T	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	7	103251252	103251252	T	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.2898	p.E966D	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	tier1	-	-	49	0	0.00	11	20	64.52
OR1G1	0	genome.wustl.edu	37	17	3030180	3030180	+	Missense_Mutation	SNP	G	G	C			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	17	3030180	3030180	G	C	SNP	OR1G1	ENST00000328890	human	ensembl	74_37	-1	known	missense	c.666	p.F222L	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1G1	HGNC	ENSG00000183024	tier1	-	-	48	0	0.00	18	14	42.42
SMC3	0	genome.wustl.edu	37	10	112349397	112349397	+	Missense_Mutation	SNP	G	G	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	10	112349397	112349397	G	A	SNP	SMC3	ENST00000361804	human	ensembl	74_37	+1	known	missense	c.1340	p.R447Q	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055	tier1	-	-	18	0	0.00	4	7	63.64
MALAT1	0	genome.wustl.edu	37	11	65270167	65270167	+	RNA	SNP	G	G	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	11	65270167	65270167	G	T	SNP	MALAT1	ENST00000508832	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	tier1	-	-	21	0	0.00	26	8	23.53
ELFN2	0	genome.wustl.edu	37	22	37771876	37771877	+	RNA	INS	-	-	CCT			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	22	37771876	37771877	-	CCT	INS	ELFN2	ENST00000414347	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.043	-	-	-	no_errors	ELFN2	HGNC	ENSG00000166897	tier1			30	0	0.00	23	5	17.86
AHNAK2	0	genome.wustl.edu	37	14	105420716	105420716	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	14	105420716	105420716	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.1072	p.E358K	0.006	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	tier1	-	-	41	0	0.00	22	6	21.43
ENSG00000249034	0	genome.wustl.edu	37	5	140242448	140242448	+	Silent	SNP	G	G	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	5	140242448	140242448	G	A	SNP	ENSG00000249034	ENST00000502505	human	ensembl	74_37	-1	known	silent	c.528	p.S176	0.839	NULL	NULL	-	no_errors	AC005609.1	Clone_based_ensembl_gene	ENSG00000249034	tier1	-	-	100	0	0.00	75	8	9.64
ABCC11	0	genome.wustl.edu	37	16	48218534	48218534	+	Missense_Mutation	SNP	A	A	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	16	48218534	48218534	A	T	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.3075	p.F1025L	0.987	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270	tier1	-	-	31	0	0.00	3	19	86.36
KIAA0040	0	genome.wustl.edu	37	1	175129948	175129955	+	Frame_Shift_Del	DEL	TCTTCTTG	TCTTCTTG	-			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	TCTTCTTG	TCTTCTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	1	175129948	175129955	TCTTCTTG	-	DEL	KIAA0040	ENST00000423313	human	ensembl	74_37	-1	known	frame_shift_del	c.202_195	p.N65fs	0.979:0.335:0.011:0.006:0.005:0.014:0.019:0.212	NULL	NULL	-	no_errors	KIAA0040	HGNC	ENSG00000235750	tier1			NA	NA	NA	NA	NA	NA
STON1	0	genome.wustl.edu	37	2	48822428	48822428	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	2	48822428	48822428	G	T	SNP	STON1	ENST00000309835	human	ensembl	74_37	+1	known	missense	c.2195	p.C732F	0.998	pirsf_Stonin	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1	HGNC	ENSG00000243244	tier1	-	-	49	0	0.00	39	25	39.06
VPS13B	0	genome.wustl.edu	37	8	100026141	100026142	+	Frame_Shift_Ins	INS	-	-	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	8	100026141	100026142	-	A	INS	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	frame_shift_ins	c.125_126	p.L44fs	1.000:1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	tier1			66	0	0.00	51	24	32.00
TEX30	0	genome.wustl.edu	37	13	103419825	103419825	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	13	103419825	103419825	C	T	SNP	TEX30	ENST00000376032	human	ensembl	74_37	-1	known	missense	c.302	p.R101H	1.000	NULL	pfam_Dienelactn_hydro	-	no_errors	TEX30	HGNC	ENSG00000151287	tier1	-	-	27	0	0.00	17	16	48.48
CNOT1	0	genome.wustl.edu	37	16	58575428	58575428	+	Missense_Mutation	SNP	C	C	G			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	16	58575428	58575428	C	G	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	missense	c.4777	p.G1593R	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	tier1	-	-	32	0	0.00	4	15	78.95
FAM122B	0	genome.wustl.edu	37	X	133922772	133922772	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	X	133922772	133922772	C	A	SNP	FAM122B	ENST00000343004	human	ensembl	74_37	-1	known	missense	c.423	p.R141S	1.000	NULL	NULL	-	no_errors	FAM122B	HGNC	ENSG00000156504	tier1	-	-	59	0	0.00	36	24	39.34
PLA2G12B	0	genome.wustl.edu	37	10	74714308	74714308	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	10	74714308	74714308	C	T	SNP	PLA2G12B	ENST00000373032	human	ensembl	74_37	-1	known	missense	c.136	p.V46I	0.997	pfam_PLipase_A2_secretory_G12	pfam_PLipase_A2_secretory_G12,superfamily_PLipase_A2_dom	-	no_errors	PLA2G12B	HGNC	ENSG00000138308	tier1	-	-	40	0	0.00	14	26	65.00
ROBO3	0	genome.wustl.edu	37	11	124743602	124743602	+	Missense_Mutation	SNP	G	G	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	11	124743602	124743602	G	A	SNP	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	missense	c.1628	p.G543E	0.589	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134	tier1	-	-	26	0	0.00	15	12	44.44
ASTL	0	genome.wustl.edu	37	2	96803348	96803348	+	Silent	SNP	G	G	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	2	96803348	96803348	G	T	SNP	ASTL	ENST00000342380	human	ensembl	74_37	-1	known	silent	c.147	p.A49	0.000	NULL	pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	-	no_errors	ASTL	HGNC	ENSG00000188886	tier1	-	-	64	0	0.00	36	39	52.00
FGFR2	0	genome.wustl.edu	37	10	123298217	123298217	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	10	123298217	123298217	G	T	SNP	FGFR2	ENST00000457416	human	ensembl	74_37	-1	known	missense	c.637	p.H213N	1.000	pirsf_FGF_rcpt_fam,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	tier1	-	-	32	0	0.00	14	3	17.65
CCDC85B	0	genome.wustl.edu	37	11	65658627	65658627	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	11	65658627	65658627	G	T	SNP	CCDC85B	ENST00000312579	human	ensembl	74_37	+1	known	missense	c.373	p.G125C	1.000	pfam_DUF2216_coiled-coil	pfam_DUF2216_coiled-coil	-	no_errors	CCDC85B	HGNC	ENSG00000175602	tier1	-	-	19	0	0.00	6	5	45.45
STAT2	0	genome.wustl.edu	37	12	56744033	56744034	+	RNA	INS	-	-	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	12	56744033	56744034	-	A	INS	STAT2	ENST00000557252	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.054:0.040	-	-	-	no_errors	STAT2	HGNC	ENSG00000170581	tier1			41	0	0.00	17	2	10.53
ZBED3-AS1	0	genome.wustl.edu	37	5	76442965	76442967	+	RNA	DEL	GAT	GAT	-			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	5	76442965	76442967	GAT	-	DEL	ZBED3-AS1	ENST00000515356	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:0.998:0.997	-	-	-	no_errors	ZBED3-AS1	HGNC	ENSG00000250802	tier1			13	0	0.00	10	6	37.50
AHNAK	0	genome.wustl.edu	37	11	62296044	62296044	+	Missense_Mutation	SNP	C	C	G			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	11	62296044	62296044	C	G	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.5845	p.G1949R	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	tier1	-	-	104	1	0.95	71	38	34.86
ENSG00000265803	0	genome.wustl.edu	37	6	158596076	158596077	+	RNA	INS	-	-	TGTGTATATATGTGTGTGTGTGTGTGTGTGTGTA			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	6	158596076	158596077	-	TGTGTATATATGTGTGTGTGTGTGTGTGTGTGTA	INS	ENSG00000265803	ENST00000580588	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AL590703.1	Clone_based_ensembl_gene	ENSG00000265803	tier1			NA	NA	NA	NA	NA	NA
LOC100133091	0	genome.wustl.edu	37	7	76256104	76256105	+	RNA	INS	-	-	GGAGGGCGGTGT			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	7	76256104	76256105	-	GGAGGGCGGTGT	INS	LOC100133091	ENST00000418663	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012:0.012	-	-	-	no_errors	AC004980.7	Clone_based_vega_gene	ENSG00000205485	tier1			NA	NA	NA	NA	NA	NA
CCDC159	0	genome.wustl.edu	37	19	11459737	11459737	+	Nonstop_Mutation	SNP	A	A	G			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	19	11459737	11459737	A	G	SNP	CCDC159	ENST00000590636	human	ensembl	74_37	+1	known	nonstop	c.117	p.*39W	0.000	NULL	NULL	-	no_errors	CCDC159	HGNC	ENSG00000183401	tier1	-	-	30	0	0.00	21	8	27.59
ZNF683	0	genome.wustl.edu	37	1	26691287	26691310	+	In_Frame_Del	DEL	CCACCGAGCGCTGGGGTGCCCCAG	CCACCGAGCGCTGGGGTGCCCCAG	-			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	CCACCGAGCGCTGGGGTGCCCCAG	CCACCGAGCGCTGGGGTGCCCCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	1	26691287	26691310	CCACCGAGCGCTGGGGTGCCCCAG	-	DEL	ZNF683	ENST00000403843	human	ensembl	74_37	-1	known	in_frame_del	c.750_727	p.LGHPSARW243in_frame_del	0.298:0.132:0.002:0.000:0.000:0.000:0.001:0.003:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.007:0.002:0.000:0.000:0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF683	HGNC	ENSG00000176083	tier1			NA	NA	NA	NA	NA	NA
SLC6A17	0	genome.wustl.edu	37	1	110717458	110717458	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	1	110717458	110717458	C	T	SNP	SLC6A17	ENST00000331565	human	ensembl	74_37	+1	known	missense	c.629	p.A210V	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport_orphan	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A17	HGNC	ENSG00000197106	tier1	-	-	53	0	0.00	22	19	46.34
FOLR3	0	genome.wustl.edu	37	11	71850758	71850758	+	Silent	SNP	C	C	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	11	71850758	71850758	C	T	SNP	FOLR3	ENST00000456237	human	ensembl	74_37	+1	known	silent	c.747	p.G249	1.000	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR3	HGNC	ENSG00000110203	tier1	-	-	45	0	0.00	21	24	53.33
ATRX	0	genome.wustl.edu	37	X	76814204	76814204	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	X	76814204	76814204	C	A	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.6440	p.S2147I	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	74	0	0.00	59	23	28.05
TRAPPC3	0	genome.wustl.edu	37	1	36602255	36602255	+	RNA	SNP	G	G	C			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	1	36602255	36602255	G	C	SNP	TRAPPC3	ENST00000462715	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.978	-	-	-	no_errors	TRAPPC3	HGNC	ENSG00000054116	tier1	-	-	46	0	0.00	33	17	34.00
EFCAB2	0	genome.wustl.edu	37	1	245133623	245133624	+	Frame_Shift_Ins	INS	-	-	CCTCC			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	1	245133623	245133624	-	CCTCC	INS	EFCAB2	ENST00000366522	human	ensembl	74_37	+1	known	frame_shift_ins	c.199_200	p.R69fs	0.000:0.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB2	HGNC	ENSG00000203666	tier1			NA	NA	NA	NA	NA	NA
CEP170B	0	genome.wustl.edu	37	14	105352885	105352890	+	In_Frame_Del	DEL	GCAGGA	GCAGGA	-			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	GCAGGA	GCAGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	14	105352885	105352890	GCAGGA	-	DEL	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	in_frame_del	c.2312_2317	p.RS772in_frame_del	0.001:0.000:0.000:0.003:0.103:0.181	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814	tier1			NA	NA	NA	NA	NA	NA
WISP2	0	genome.wustl.edu	37	20	43343900	43343905	+	RNA	DEL	GTGAGC	GTGAGC	-			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	GTGAGC	GTGAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	20	43343900	43343905	GTGAGC	-	DEL	WISP2	ENST00000497421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008:0.006:0.005:0.000:0.000:0.000	-	-	-	no_errors	WISP2	HGNC	ENSG00000064205	tier1			NA	NA	NA	NA	NA	NA
COPS4	0	genome.wustl.edu	37	4	83987594	83987594	+	Missense_Mutation	SNP	C	C	G			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	4	83987594	83987594	C	G	SNP	COPS4	ENST00000264389	human	ensembl	74_37	+1	known	missense	c.890	p.S297C	1.000	pfam_PCI_dom,smart_PCI_dom	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS4	HGNC	ENSG00000138663	tier1	-	-	38	0	0.00	25	14	35.90
TGM4	0	genome.wustl.edu	37	3	44916168	44916168	+	RNA	SNP	G	G	C			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	3	44916168	44916168	G	C	SNP	TGM4	ENST00000471637	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	TGM4	HGNC	ENSG00000163810	tier1	-	-	65	0	0.00	11	29	72.50
PRSS3	0	genome.wustl.edu	37	9	33794798	33794799	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	9	33794798	33794799	GA	-	DEL	PRSS3	ENST00000342836	human	ensembl	74_37	+1	known	frame_shift_del	c.9_10	p.E5fs	0.000:0.001	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS3	HGNC	ENSG00000010438	tier1			21	0	0.00	23	2	8.00
RUNX1T1	0	genome.wustl.edu	37	8	93074910	93074911	+	In_Frame_Ins	INS	-	-	CGGAGGCAGGGTGCTGGG			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	8	93074910	93074911	-	CGGAGGCAGGGTGCTGGG	INS	RUNX1T1	ENST00000517493	human	ensembl	74_37	-1	known	in_frame_ins	c.116_115	p.39in_frame_insAQHPAS	1.000:1.000	NULL	NULL	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	tier1			NA	NA	NA	NA	NA	NA
P4HA2	0	genome.wustl.edu	37	5	131528746	131528746	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	5	131528746	131528746	C	T	SNP	P4HA2	ENST00000166534	human	ensembl	74_37	-1	known	missense	c.1565	p.G522E	1.000	NULL	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA2	HGNC	ENSG00000072682	tier1	-	-	22	0	0.00	22	18	45.00
EFS	0	genome.wustl.edu	37	14	23828166	23828166	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	14	23828166	23828166	G	T	SNP	EFS	ENST00000216733	human	ensembl	74_37	-1	known	missense	c.1170	p.D390E	0.998	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	EFS	HGNC	ENSG00000100842	tier1	-	-	39	0	0.00	26	4	13.33
SMARCA2	0	genome.wustl.edu	37	9	2097414	2097414	+	Silent	SNP	C	C	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	9	2097414	2097414	C	T	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	silent	c.3021	p.N1007	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	tier1	-	-	40	0	0.00	12	20	60.61
PROM1	0	genome.wustl.edu	37	4	15993986	15993986	+	Missense_Mutation	SNP	T	T	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	4	15993986	15993986	T	A	SNP	PROM1	ENST00000447510	human	ensembl	74_37	-1	known	missense	c.1796	p.E599V	0.017	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062	tier1	-	-	37	0	0.00	10	8	44.44
SNTG1	0	genome.wustl.edu	37	8	51363127	51363127	+	Missense_Mutation	SNP	G	G	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	8	51363127	51363127	G	A	SNP	SNTG1	ENST00000518864	human	ensembl	74_37	+1	known	missense	c.289	p.G97R	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481	tier1	-	-	53	0	0.00	38	25	39.68
NHSL2	0	genome.wustl.edu	37	X	71359451	71359451	+	Missense_Mutation	SNP	A	A	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	X	71359451	71359451	A	T	SNP	NHSL2	ENST00000540800	human	ensembl	74_37	+1	known	missense	c.2053	p.T685S	1.000	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	tier1	-	-	26	0	0.00	20	10	33.33
SIGLEC17P	0	genome.wustl.edu	37	19	51675359	51675359	+	RNA	SNP	C	C	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	19	51675359	51675359	C	A	SNP	SIGLEC17P	ENST00000341811	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SIGLEC17P	HGNC	ENSG00000171101	tier1	-	-	173	1	0.57	98	65	39.63
C3AR1	0	genome.wustl.edu	37	12	8212621	8212621	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	12	8212621	8212621	C	T	SNP	C3AR1	ENST00000307637	human	ensembl	74_37	-1	known	missense	c.161	p.R54Q	0.414	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Anaphtx_C3AR1,prints_Formyl_pep_rcpt,prints_Anaphtx_C5AR1/C5AR2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Anaphtx_C3AR1,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Formyl_pep_rcpt,prints_Anaphtx_C5AR1/C5AR2	-	no_errors	C3AR1	HGNC	ENSG00000171860	tier1	-	-	30	0	0.00	18	28	60.87
QRFPR	0	genome.wustl.edu	37	4	122301664	122301664	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A5VE-01A-11D-A29N-09	TCGA-JV-A5VE-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2809193b-495e-4159-9be7-fd3e2f4192b5	ca89a56f-8f9e-485f-8106-8c0c0cc69ded	4	122301664	122301664	C	A	SNP	QRFPR	ENST00000394427	human	ensembl	74_37	-1	known	missense	c.139	p.A47S	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	QRFPR	HGNC	ENSG00000186867	tier1	-	-	34	0	0.00	17	27	61.36
