Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ZCCHC4	0	genome.wustl.edu	37	4	25353250	25353250	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	25353250	25353250	C	A	SNP	ZCCHC4	ENST00000302874	human	ensembl	74_37	+1	known	missense	c.950	p.P317H	1.000	NULL	pfam_Znf_GRF,pfam_N6_adenine_Mtase-rel_euk,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZCCHC4	HGNC	ENSG00000168228	tier1	-	-	46	0	0.00	43	4	8.51
FCGBP	0	genome.wustl.edu	37	19	40433817	40433817	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	40433817	40433817	G	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.452	p.T151N	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	tier1	-	-	36	0	0.00	15	4	21.05
AZGP1	0	genome.wustl.edu	37	7	99564556	99564556	+	RNA	SNP	C	C	G			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	7	99564556	99564556	C	G	SNP	AZGP1	ENST00000483612	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AZGP1	HGNC	ENSG00000160862	tier1	-	-	36	0	0.00	12	18	60.00
YARS	0	genome.wustl.edu	37	1	33256716	33256716	+	RNA	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	33256716	33256716	C	A	SNP	YARS	ENST00000470377	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	YARS	HGNC	ENSG00000134684	tier1	-	-	46	0	0.00	43	4	8.51
IFT57	0	genome.wustl.edu	37	3	107885832	107885832	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	3	107885832	107885832	C	A	SNP	IFT57	ENST00000264538	human	ensembl	74_37	-1	known	nonsense	c.850	p.G284*	1.000	pfam_Intra-flagellar_transport_57,superfamily_t-SNARE	pfam_Intra-flagellar_transport_57,superfamily_t-SNARE	-	no_errors	IFT57	HGNC	ENSG00000114446	tier1	-	-	57	0	0.00	43	4	8.51
ADAMTS12	0	genome.wustl.edu	37	5	33535070	33535070	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	5	33535070	33535070	G	T	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.4474	p.Q1492K	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	tier1	-	-	25	0	0.00	12	3	20.00
OR2W3	0	genome.wustl.edu	37	1	248058999	248058999	+	Silent	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	248058999	248058999	G	T	SNP	OR2W3	ENST00000360358	human	ensembl	74_37	+1	known	silent	c.111	p.L37	0.078	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2W3	HGNC	ENSG00000238243	tier1	-	-	54	0	0.00	41	4	8.89
CXorf36	0	genome.wustl.edu	37	X	45013192	45013192	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	X	45013192	45013192	C	A	SNP	CXorf36	ENST00000398000	human	ensembl	74_37	-1	known	silent	c.924	p.R308	0.994	NULL	NULL	-	no_errors	CXorf36	HGNC	ENSG00000147113	tier1	-	-	29	0	0.00	42	4	8.70
RHBDL3	0	genome.wustl.edu	37	17	30621407	30621407	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	17	30621407	30621407	C	A	SNP	RHBDL3	ENST00000269051	human	ensembl	74_37	+1	known	missense	c.614	p.P205Q	1.000	pirsf_Peptidase_S54_rhomboid_met	pfam_Peptidase_S54_rhomboid_dom,pirsf_Peptidase_S54_rhomboid_met,pfscan_EF_hand_dom	-	no_errors	RHBDL3	HGNC	ENSG00000141314	tier1	-	-	81	0	0.00	43	4	8.51
CDC42EP1	0	genome.wustl.edu	37	22	37964613	37964613	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	22	37964613	37964613	G	T	SNP	CDC42EP1	ENST00000249014	human	ensembl	74_37	+1	known	missense	c.962	p.W321L	0.365	NULL	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	tier1	-	-	36	0	0.00	20	3	13.04
UBA6	0	genome.wustl.edu	37	4	68488624	68488624	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	68488624	68488624	G	T	SNP	UBA6	ENST00000322244	human	ensembl	74_37	-1	known	missense	c.2948	p.P983Q	1.000	pfam_Ub-activating_enz_e1_C,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178	tier1	-	-	44	0	0.00	46	4	8.00
GABRG3	0	genome.wustl.edu	37	15	27777805	27777805	+	Silent	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	15	27777805	27777805	C	T	SNP	GABRG3	ENST00000333743	human	ensembl	74_37	+1	known	silent	c.1182	p.S394	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg3_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg3_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG3	HGNC	ENSG00000182256	tier1	-	-	72	0	0.00	36	67	65.05
KCND3	0	genome.wustl.edu	37	1	112525032	112525032	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	112525032	112525032	G	T	SNP	KCND3	ENST00000315987	human	ensembl	74_37	-1	known	missense	c.317	p.P106Q	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385	tier1	-	-	27	0	0.00	38	4	9.30
CD19	0	genome.wustl.edu	37	16	28943879	28943879	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	16	28943879	28943879	C	A	SNP	CD19	ENST00000538922	human	ensembl	74_37	+1	known	missense	c.301	p.P101T	0.005	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD19	HGNC	ENSG00000177455	tier1	-	-	38	0	0.00	18	4	18.18
ENSG00000266999	0	genome.wustl.edu	37	17	34235476	34235476	+	RNA	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	17	34235476	34235476	C	A	SNP	ENSG00000266999	ENST00000587132	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	AC015849.16	Clone_based_vega_gene	ENSG00000266999	tier1	-	-	28	0	0.00	18	4	18.18
NEK8	0	genome.wustl.edu	37	17	27067518	27067518	+	Frame_Shift_Del	DEL	C	C	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	17	27067518	27067518	C	-	DEL	NEK8	ENST00000268766	human	ensembl	74_37	+1	known	frame_shift_del	c.1455	p.Q487fs	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Prot_kinase_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_RCC1/BLIP-II,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602	tier1			24	0	0.00	29	3	9.38
PAPPA	0	genome.wustl.edu	37	9	118950454	118950454	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	9	118950454	118950454	C	A	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	silent	c.1437	p.T479	0.007	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	tier1	-	-	23	0	0.00	17	3	15.00
NFATC3	0	genome.wustl.edu	37	16	68156082	68156082	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	16	68156082	68156082	C	A	SNP	NFATC3	ENST00000346183	human	ensembl	74_37	+1	known	missense	c.296	p.P99Q	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC3	HGNC	ENSG00000072736	tier1	-	-	53	0	0.00	35	4	10.26
FAM230C	0	genome.wustl.edu	37	22	21663891	21663891	+	RNA	SNP	T	T	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	22	21663891	21663891	T	C	SNP	FAM230C	ENST00000436681	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.411	-	-	-	no_errors	KB-1183D5.13	Clone_based_vega_gene	ENSG00000206142	tier1	-	-	63	0	0.00	1	8	88.89
PLD4	0	genome.wustl.edu	37	14	105394089	105394089	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	14	105394089	105394089	C	T	SNP	PLD4	ENST00000392593	human	ensembl	74_37	+1	known	missense	c.170	p.P57L	0.000	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD4	HGNC	ENSG00000166428	tier1	-	-	92	0	0.00	59	46	43.81
HMGB1P5	0	genome.wustl.edu	37	3	22424060	22424060	+	RNA	SNP	G	G	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	3	22424060	22424060	G	A	SNP	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967	tier1	-	-	51	0	0.00	30	32	51.61
SLC5A11	0	genome.wustl.edu	37	16	24921737	24921739	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	16	24921737	24921739	CAG	-	DEL	SLC5A11	ENST00000347898	human	ensembl	74_37	+1	known	in_frame_del	c.1761_1763	p.S591in_frame_del	0.002:0.001:0.001	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC	ENSG00000158865	tier1			87	0	0.00	31	4	11.43
CHML	0	genome.wustl.edu	37	1	241797739	241797739	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	241797739	241797739	C	A	SNP	CHML	ENST00000366553	human	ensembl	74_37	-1	known	nonsense	c.1330	p.E444*	0.992	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHML	HGNC	ENSG00000203668	tier1	-	-	32	0	0.00	23	3	11.54
LNPEP	0	genome.wustl.edu	37	5	96320886	96320886	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	5	96320886	96320886	G	T	SNP	LNPEP	ENST00000231368	human	ensembl	74_37	+1	known	missense	c.963	p.R321S	0.984	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LNPEP	HGNC	ENSG00000113441	tier1	-	-	47	0	0.00	45	4	8.16
NPC1L1	0	genome.wustl.edu	37	7	44560685	44560685	+	Missense_Mutation	SNP	T	T	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	7	44560685	44560685	T	C	SNP	NPC1L1	ENST00000289547	human	ensembl	74_37	-1	known	missense	c.2986	p.I996V	0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520	tier1	-	-	26	0	0.00	22	16	42.11
SHCBP1	0	genome.wustl.edu	37	16	46633815	46633815	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	16	46633815	46633815	C	A	SNP	SHCBP1	ENST00000303383	human	ensembl	74_37	-1	known	missense	c.1273	p.D425Y	1.000	superfamily_Pectin_lyase_fold/virulence	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	-	no_errors	SHCBP1	HGNC	ENSG00000171241	tier1	-	-	27	0	0.00	12	3	20.00
ENSG00000236233	0	genome.wustl.edu	37	9	67793683	67793684	+	RNA	INS	-	-	CT			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	9	67793683	67793684	-	CT	INS	ENSG00000236233	ENST00000315762	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.063:0.065	-	-	-	no_errors	RP11-12A20.7	Clone_based_vega_gene	ENSG00000236233	tier1			10	0	0.00	7	6	46.15
C19orf38	0	genome.wustl.edu	37	19	10966998	10966998	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	10966998	10966998	C	T	SNP	C19orf38	ENST00000397820	human	ensembl	74_37	+1	known	missense	c.398	p.A133V	0.011	NULL	NULL	-	no_errors	C19orf38	HGNC	ENSG00000214212	tier1	-	-	29	0	0.00	57	5	8.06
WWC1	0	genome.wustl.edu	37	5	167891760	167891760	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	5	167891760	167891760	C	A	SNP	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	silent	c.2943	p.S981	0.002	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC1	HGNC	ENSG00000113645	tier1	-	-	52	0	0.00	44	4	8.33
FRS2	0	genome.wustl.edu	37	12	69967977	69967977	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	12	69967977	69967977	C	A	SNP	FRS2	ENST00000299293	human	ensembl	74_37	+1	known	missense	c.769	p.P257T	1.000	NULL	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS2	HGNC	ENSG00000166225	tier1	-	-	37	0	0.00	54	5	8.47
PTPRJ	0	genome.wustl.edu	37	11	48142787	48142787	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	11	48142787	48142787	G	T	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	missense	c.585	p.W195C	0.001	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	tier1	-	-	37	0	0.00	21	4	16.00
TRA2B	0	genome.wustl.edu	37	3	185638941	185638941	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	3	185638941	185638941	C	A	SNP	TRA2B	ENST00000453386	human	ensembl	74_37	-1	known	nonsense	c.673	p.G225*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2B	HGNC	ENSG00000136527	tier1	-	-	35	0	0.00	42	4	8.70
OR4M1	0	genome.wustl.edu	37	14	20249229	20249229	+	Missense_Mutation	SNP	G	G	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	14	20249229	20249229	G	C	SNP	OR4M1	ENST00000315957	human	ensembl	74_37	+1	known	missense	c.748	p.V250L	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M1	HGNC	ENSG00000176299	tier1	-	-	173	0	0.00	141	38	21.23
CALHM3	0	genome.wustl.edu	37	10	105236233	105236233	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	10	105236233	105236233	C	A	SNP	CALHM3	ENST00000369783	human	ensembl	74_37	-1	known	missense	c.361	p.G121W	1.000	NULL	NULL	-	no_errors	CALHM3	HGNC	ENSG00000183128	tier1	-	-	62	0	0.00	28	4	12.50
ATG2B	0	genome.wustl.edu	37	14	96784117	96784117	+	Silent	SNP	G	G	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	14	96784117	96784117	G	A	SNP	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	silent	c.2955	p.G985	0.301	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	tier1	-	-	107	0	0.00	41	44	51.76
KRTAP5-5	0	genome.wustl.edu	37	11	1651210	1651239	+	In_Frame_Del	DEL	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	11	1651210	1651239	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG	-	DEL	KRTAP5-5	ENST00000399676	human	ensembl	74_37	+1	known	in_frame_del	c.140_169	p.GCAGCGGCGS51in_frame_del	0.818:0.967:0.993:0.997:0.997:0.999:1.000:0.998:0.998:0.991:0.983:0.976:1.000:1.000:0.999:0.995:0.061:0.083:0.113:0.325:0.996:0.999:1.000:1.000:0.999:0.994:0.996:0.995:0.546:0.579	NULL	NULL	-	no_errors	KRTAP5-5	HGNC	ENSG00000185940	tier1			NA	NA	NA	NA	NA	NA
GIMAP4	0	genome.wustl.edu	37	7	150267070	150267070	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	7	150267070	150267070	C	A	SNP	GIMAP4	ENST00000461940	human	ensembl	74_37	+1	novel	silent	c.81	p.P27	0.000	NULL	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP4	HGNC	ENSG00000133574	tier1	-	-	42	0	0.00	25	4	13.79
NECAB3	0	genome.wustl.edu	37	20	32245323	32245357	+	RNA	DEL	CAGGGACGGGACCTGCCCTGGGTCGCTCAGCCAGG	CAGGGACGGGACCTGCCCTGGGTCGCTCAGCCAGG	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	CAGGGACGGGACCTGCCCTGGGTCGCTCAGCCAGG	CAGGGACGGGACCTGCCCTGGGTCGCTCAGCCAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	20	32245323	32245357	CAGGGACGGGACCTGCCCTGGGTCGCTCAGCCAGG	-	DEL	NECAB3	ENST00000606525	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.015:0.008:0.007:0.013:0.014:0.014:0.018:0.019:0.013:0.010:0.002:0.002:0.001:0.001:0.002:0.002:0.000:0.000:0.000:0.001:0.005:0.003:0.001	-	-	-	no_errors	NECAB3	HGNC	ENSG00000125967	tier1			NA	NA	NA	NA	NA	NA
LRRK2	0	genome.wustl.edu	37	12	40681216	40681216	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	12	40681216	40681216	G	T	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.2564	p.G855V	0.002	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	tier1	-	-	52	0	0.00	46	4	8.00
UTP20	0	genome.wustl.edu	37	12	101685626	101685626	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	12	101685626	101685626	G	T	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	missense	c.998	p.G333V	0.782	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	tier1	-	-	32	0	0.00	37	4	9.76
FAT2	0	genome.wustl.edu	37	5	150946545	150946545	+	Missense_Mutation	SNP	A	A	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	5	150946545	150946545	A	C	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.1948	p.S650A	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	tier1	-	-	47	0	0.00	15	15	50.00
RSPH4A	0	genome.wustl.edu	37	6	116949179	116949179	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	6	116949179	116949179	C	T	SNP	RSPH4A	ENST00000229554	human	ensembl	74_37	+1	known	missense	c.1309	p.P437S	1.000	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834	tier1	-	-	74	0	0.00	40	45	52.94
CRISPLD2	0	genome.wustl.edu	37	16	84900557	84900557	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	16	84900557	84900557	C	A	SNP	CRISPLD2	ENST00000262424	human	ensembl	74_37	+1	known	missense	c.764	p.A255D	0.004	NULL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD2	HGNC	ENSG00000103196	tier1	-	-	64	0	0.00	41	4	8.89
SCN8A	0	genome.wustl.edu	37	12	52200275	52200275	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	12	52200275	52200275	G	T	SNP	SCN8A	ENST00000354534	human	ensembl	74_37	+1	known	missense	c.5005	p.G1669W	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	tier1	-	-	53	0	0.00	44	4	8.16
FAM46C	0	genome.wustl.edu	37	1	118165499	118165499	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	118165499	118165499	G	T	SNP	FAM46C	ENST00000369448	human	ensembl	74_37	+1	known	missense	c.9	p.E3D	0.966	NULL	pfam_DUF1693	-	no_errors	FAM46C	HGNC	ENSG00000183508	tier1	-	-	32	0	0.00	23	3	11.54
NOVA2	0	genome.wustl.edu	37	19	46457065	46457065	+	Silent	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	46457065	46457065	G	T	SNP	NOVA2	ENST00000263257	human	ensembl	74_37	-1	known	silent	c.369	p.T123	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA2	HGNC	ENSG00000104967	tier1	-	-	64	0	0.00	31	4	11.43
VWA7	0	genome.wustl.edu	37	6	31734954	31734954	+	Silent	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	6	31734954	31734954	G	T	SNP	VWA7	ENST00000375686	human	ensembl	74_37	-1	known	silent	c.1863	p.P621	0.995	NULL	NULL	-	no_errors	VWA7	HGNC	ENSG00000204396	tier1	-	-	30	0	0.00	37	4	9.76
SNAI2	0	genome.wustl.edu	37	8	49832765	49832765	+	Silent	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	8	49832765	49832765	G	T	SNP	SNAI2	ENST00000020945	human	ensembl	74_37	-1	known	silent	c.315	p.P105	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI2	HGNC	ENSG00000019549	tier1	-	-	39	0	0.00	44	4	8.33
R3HCC1L	0	genome.wustl.edu	37	10	99967999	99967999	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	10	99967999	99967999	C	A	SNP	R3HCC1L	ENST00000370584	human	ensembl	74_37	+1	known	missense	c.128	p.P43H	0.000	NULL	NULL	-	no_errors	R3HCC1L	HGNC	ENSG00000166024	tier1	-	-	59	0	0.00	36	4	10.00
APOA4	0	genome.wustl.edu	37	11	116691796	116691796	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	11	116691796	116691796	C	A	SNP	APOA4	ENST00000357780	human	ensembl	74_37	-1	known	missense	c.978	p.R326S	0.911	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA4	HGNC	ENSG00000110244	tier1	-	-	65	0	0.00	46	4	8.00
CHD2	0	genome.wustl.edu	37	15	93558113	93558113	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	15	93558113	93558113	C	A	SNP	CHD2	ENST00000557381	human	ensembl	74_37	+1	putative	missense	c.4880	p.P1627H	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	tier1	-	-	29	0	0.00	46	4	8.00
MYO9A	0	genome.wustl.edu	37	15	72190133	72190133	+	Missense_Mutation	SNP	G	G	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	15	72190133	72190133	G	C	SNP	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	missense	c.4711	p.L1571V	0.012	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	tier1	-	-	45	0	0.00	47	18	27.69
ADAD2	0	genome.wustl.edu	37	16	84230276	84230276	+	Missense_Mutation	SNP	G	G	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	16	84230276	84230276	G	A	SNP	ADAD2	ENST00000268624	human	ensembl	74_37	+1	known	missense	c.1796	p.R599H	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD2	HGNC	ENSG00000140955	tier1	-	-	35	0	0.00	18	20	52.63
ALMS1P	0	genome.wustl.edu	37	2	73901980	73901980	+	RNA	SNP	G	G	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	2	73901980	73901980	G	A	SNP	ALMS1P	ENST00000450720	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	ALMS1P	HGNC	ENSG00000163016	tier1	rs200040304	-	90	0	0.00	112	10	8.20
FAM182A	0	genome.wustl.edu	37	20	26061818	26061818	+	RNA	SNP	G	G	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	20	26061818	26061818	G	C	SNP	FAM182A	ENST00000376398	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.580	-	-	-	no_errors	FAM182A	HGNC	ENSG00000125804	tier1	rs112101451	-	49	0	0.00	42	8	16.00
MAP7D3	0	genome.wustl.edu	37	X	135313835	135313835	+	Silent	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	X	135313835	135313835	C	T	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	silent	c.1227	p.K409	0.024	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680	tier1	-	-	30	0	0.00	38	4	9.52
ARAP3	0	genome.wustl.edu	37	5	141036193	141036193	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	5	141036193	141036193	C	A	SNP	ARAP3	ENST00000239440	human	ensembl	74_37	-1	known	nonsense	c.3667	p.E1223*	1.000	pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	tier1	-	-	51	0	0.00	56	5	8.20
APBB2	0	genome.wustl.edu	37	4	41016404	41016404	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	41016404	41016404	C	A	SNP	APBB2	ENST00000295974	human	ensembl	74_37	-1	known	missense	c.31	p.V11F	0.253	NULL	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB2	HGNC	ENSG00000163697	tier1	-	-	45	0	0.00	42	4	8.70
CDC20	0	genome.wustl.edu	37	1	43825929	43825929	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	43825929	43825929	C	A	SNP	CDC20	ENST00000310955	human	ensembl	74_37	+1	known	missense	c.622	p.L208M	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC20	HGNC	ENSG00000117399	tier1	-	-	36	0	0.00	36	4	10.00
MARS2	0	genome.wustl.edu	37	2	198571474	198571474	+	Missense_Mutation	SNP	C	C	G			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	2	198571474	198571474	C	G	SNP	MARS2	ENST00000282276	human	ensembl	74_37	+1	known	missense	c.1345	p.L449V	0.965	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS2	HGNC	ENSG00000247626	tier1	-	-	28	0	0.00	16	18	52.94
ISM1	0	genome.wustl.edu	37	20	13279761	13279761	+	Silent	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	20	13279761	13279761	C	T	SNP	ISM1	ENST00000262487	human	ensembl	74_37	+1	known	silent	c.1050	p.D350	0.980	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM1	HGNC	ENSG00000101230	tier1	-	-	31	0	0.00	16	17	51.52
CCDC30	0	genome.wustl.edu	37	1	43047166	43047166	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	43047166	43047166	C	A	SNP	CCDC30	ENST00000340612	human	ensembl	74_37	+1	known	missense	c.1201	p.Q401K	0.969	NULL	NULL	-	no_errors	CCDC30	HGNC	ENSG00000186409	tier1	-	-	39	0	0.00	38	4	9.52
ERVMER34-1	0	genome.wustl.edu	37	4	53610776	53610776	+	Silent	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	53610776	53610776	C	T	SNP	ERVMER34-1	ENST00000440542	human	ensembl	74_37	-1	known	silent	c.912	p.G304	0.006	NULL	pfam_TLV/ENV_coat_polyprotein	-	no_errors	ERVMER34-1	HGNC	ENSG00000226887	tier1	-	-	59	0	0.00	29	25	46.30
PREP	0	genome.wustl.edu	37	6	105800914	105800914	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	6	105800914	105800914	C	A	SNP	PREP	ENST00000369110	human	ensembl	74_37	-1	known	missense	c.756	p.R252S	0.963	pfam_Pept_S9A_N	pfam_Pept_S9A_N,pfam_Peptidase_S9,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377	tier1	-	-	43	0	0.00	41	4	8.89
ZAN	0	genome.wustl.edu	37	7	100382410	100382410	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	7	100382410	100382410	C	A	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	missense	c.6785	p.P2262H	1.000	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	tier1	-	-	38	0	0.00	44	4	8.33
ELMO1	0	genome.wustl.edu	37	7	36895294	36895295	+	Frame_Shift_Ins	INS	-	-	G			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	7	36895294	36895295	-	G	INS	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	frame_shift_ins	c.2046_2045	p.R683fs	0.017:0.999	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	tier1			37	0	0.00	18	17	48.57
SVIL	0	genome.wustl.edu	37	10	29777607	29777607	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	10	29777607	29777607	C	A	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	missense	c.4271	p.R1424L	1.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	tier1	-	-	51	0	0.00	37	4	9.76
LIG1	0	genome.wustl.edu	37	19	48647158	48647158	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	48647158	48647158	C	A	SNP	LIG1	ENST00000263274	human	ensembl	74_37	-1	known	missense	c.839	p.C280F	1.000	superfamily_DNA_ligase_ATP-dep_N	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_ATP-dep_C,superfamily_DNA_ligase_ATP-dep_N,superfamily_NA-bd_OB-fold,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG1	HGNC	ENSG00000105486	tier1	-	-	109	0	0.00	38	4	9.52
CASZ1	0	genome.wustl.edu	37	1	10725140	10725140	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	10725140	10725140	C	A	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	nonsense	c.505	p.G169*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	tier1	-	-	29	0	0.00	44	4	8.33
SAMD9L	0	genome.wustl.edu	37	7	92762287	92762287	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	7	92762287	92762287	G	T	SNP	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	missense	c.2998	p.L1000M	0.997	NULL	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	tier1	-	-	31	0	0.00	22	3	12.00
ENSG00000221437	0	genome.wustl.edu	37	10	125671068	125671068	+	RNA	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	10	125671068	125671068	C	A	SNP	ENSG00000221437	ENST00000408510	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors	AC068058.1	Clone_based_ensembl_gene	ENSG00000221437	tier1	-	-	40	0	0.00	12	3	20.00
ZNF354A	0	genome.wustl.edu	37	5	178140027	178140027	+	Silent	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	5	178140027	178140027	G	T	SNP	ZNF354A	ENST00000335815	human	ensembl	74_37	-1	known	silent	c.852	p.S284	0.062	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354A	HGNC	ENSG00000169131	tier1	-	-	65	0	0.00	45	4	8.16
ANGEL2	0	genome.wustl.edu	37	1	213168389	213168389	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	213168389	213168389	C	A	SNP	ANGEL2	ENST00000366962	human	ensembl	74_37	-1	known	missense	c.1629	p.E543D	0.912	superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL2	HGNC	ENSG00000174606	tier1	-	-	44	0	0.00	45	4	8.16
MYEOV	0	genome.wustl.edu	37	11	69062890	69062890	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	11	69062890	69062890	C	A	SNP	MYEOV	ENST00000308946	human	ensembl	74_37	+1	known	silent	c.69	p.L23	0.004	NULL	NULL	-	no_errors	MYEOV	HGNC	ENSG00000172927	tier1	-	-	34	0	0.00	40	4	9.09
RGAG1	0	genome.wustl.edu	37	X	109695164	109695164	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	X	109695164	109695164	C	A	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	nonsense	c.1319	p.S440*	0.053	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	tier1	-	-	41	0	0.00	54	5	8.47
DNMT1	0	genome.wustl.edu	37	19	10287970	10287970	+	Silent	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	10287970	10287970	C	T	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	silent	c.567	p.K189	0.692	pirsf_DNA_C5-MeTrfase_1_euk	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	tier1	-	-	82	0	0.00	81	32	28.32
AKAP9	0	genome.wustl.edu	37	7	91732034	91732034	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	7	91732034	91732034	C	A	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	silent	c.11236	p.R3746	1.000	pfam_PACT_domain	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914	tier1	-	-	51	0	0.00	45	4	8.16
IFNLR1	0	genome.wustl.edu	37	1	24484288	24484288	+	Missense_Mutation	SNP	T	T	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	24484288	24484288	T	A	SNP	IFNLR1	ENST00000327535	human	ensembl	74_37	-1	known	missense	c.895	p.T299S	0.104	NULL	superfamily_Fibronectin_type3	-	no_errors	IFNLR1	HGNC	ENSG00000185436	tier1	-	-	55	0	0.00	33	22	40.00
ENSG00000270012	0	genome.wustl.edu	37	X	49130125	49130125	+	RNA	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	X	49130125	49130125	G	T	SNP	ENSG00000270012	ENST00000602455	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.891	-	-	-	no_errors	LL0XNC01-7P3.1	Clone_based_vega_gene	ENSG00000270012	tier1	-	-	17	0	0.00	10	7	41.18
TCF7L2	0	genome.wustl.edu	37	10	114925316	114925317	+	Frame_Shift_Ins	INS	-	-	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	10	114925316	114925317	-	A	INS	TCF7L2	ENST00000355995	human	ensembl	74_37	+1	known	frame_shift_ins	c.1445_1446	p.K486fs	1.000:1.000	NULL	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L2	HGNC	ENSG00000148737	tier1			39	0	0.00	17	2	10.53
FAM182A	0	genome.wustl.edu	37	20	26061803	26061803	+	RNA	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	20	26061803	26061803	C	A	SNP	FAM182A	ENST00000376398	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.644	-	-	-	no_errors	FAM182A	HGNC	ENSG00000125804	tier1	rs78281752	-	47	0	0.00	39	8	17.02
CAPN11	0	genome.wustl.edu	37	6	44147741	44147741	+	Missense_Mutation	SNP	A	A	G			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	6	44147741	44147741	A	G	SNP	CAPN11	ENST00000398776	human	ensembl	74_37	+1	known	missense	c.1481	p.Q494R	0.006	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN11	HGNC	ENSG00000137225	tier1	-	-	38	0	0.00	31	4	11.43
XCR1	0	genome.wustl.edu	37	3	46063291	46063291	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	3	46063291	46063291	C	T	SNP	XCR1	ENST00000309285	human	ensembl	74_37	-1	known	missense	c.149	p.S50N	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_XCR1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Brdyknn_rcpt	-	no_errors	XCR1	HGNC	ENSG00000173578	tier1	-	-	53	0	0.00	36	4	10.00
MPPED2	0	genome.wustl.edu	37	11	30410479	30410479	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	11	30410479	30410479	G	T	SNP	MPPED2	ENST00000448418	human	ensembl	74_37	-1	known	missense	c.791	p.A264E	0.000	NULL	pfam_PEstase_dom	-	no_errors	MPPED2	HGNC	ENSG00000066382	tier1	-	-	37	0	0.00	38	4	9.52
UHMK1	0	genome.wustl.edu	37	1	162492294	162492294	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	162492294	162492294	C	A	SNP	UHMK1	ENST00000489294	human	ensembl	74_37	+1	known	missense	c.1214	p.P405Q	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RRM_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Prot_kinase_dom	-	no_errors	UHMK1	HGNC	ENSG00000152332	tier1	-	-	45	0	0.00	46	4	8.00
UNC79	0	genome.wustl.edu	37	14	94083507	94083507	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	14	94083507	94083507	C	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.4147	p.P1383T	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958	tier1	-	-	29	0	0.00	26	4	13.33
DDX23	0	genome.wustl.edu	37	12	49227209	49227209	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	12	49227209	49227209	C	A	SNP	DDX23	ENST00000308025	human	ensembl	74_37	-1	known	missense	c.1654	p.D552Y	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX23	HGNC	ENSG00000174243	tier1	-	-	72	0	0.00	42	4	8.51
ZNF317	0	genome.wustl.edu	37	19	9271774	9271774	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	9271774	9271774	G	T	SNP	ZNF317	ENST00000247956	human	ensembl	74_37	+1	known	missense	c.1453	p.D485Y	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803	tier1	-	-	31	0	0.00	46	4	8.00
LOC101927031	0	genome.wustl.edu	37	5	148596517	148596517	+	RNA	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	5	148596517	148596517	C	A	SNP	LOC101927031	ENST00000523176	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AC012613.2	Clone_based_vega_gene	ENSG00000253406	tier1	-	-	37	0	0.00	40	4	9.09
C12orf76	0	genome.wustl.edu	37	12	110488793	110488793	+	Silent	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	12	110488793	110488793	G	T	SNP	C12orf76	ENST00000548191	human	ensembl	74_37	-1	putative	silent	c.318	p.T106	0.010	NULL	pfam_P2X_purnocptor	-	no_errors	C12orf76	HGNC	ENSG00000174456	tier1	-	-	44	0	0.00	42	4	8.70
ENSG00000257743	0	genome.wustl.edu	37	7	141875547	141875547	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	7	141875547	141875547	G	T	SNP	ENSG00000257743	ENST00000477922	human	ensembl	74_37	+1	putative	missense	c.3783	p.M1261I	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,superfamily_P_trefoil,smart_P_trefoil	-	no_errors	RP11-1220K2.2	Clone_based_vega_gene	ENSG00000257743	tier1	-	-	54	0	0.00	44	4	8.33
ACAP1	0	genome.wustl.edu	37	17	7253505	7253505	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	17	7253505	7253505	G	T	SNP	ACAP1	ENST00000158762	human	ensembl	74_37	+1	known	missense	c.2021	p.R674M	0.953	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP1	HGNC	ENSG00000072818	tier1	-	-	76	0	0.00	37	4	9.76
MIR643	0	genome.wustl.edu	37	19	52785127	52785127	+	RNA	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	52785127	52785127	G	T	SNP	MIR643	ENST00000385267	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR643	HGNC	ENSG00000208002	tier1	-	-	40	0	0.00	17	3	15.00
XIST	0	genome.wustl.edu	37	X	73070785	73070785	+	RNA	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	X	73070785	73070785	C	A	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	XIST	HGNC	ENSG00000229807	tier1	-	-	41	0	0.00	10	3	23.08
OR5B12	0	genome.wustl.edu	37	11	58206903	58206903	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	11	58206903	58206903	G	T	SNP	OR5B12	ENST00000302572	human	ensembl	74_37	-1	known	missense	c.722	p.S241Y	1.000	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR5B12	HGNC	ENSG00000172362	tier1	-	-	50	0	0.00	28	4	12.50
TRIML2	0	genome.wustl.edu	37	4	189012788	189012788	+	Silent	SNP	A	A	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	189012788	189012788	A	T	SNP	TRIML2	ENST00000512729	human	ensembl	74_37	-1	known	silent	c.903	p.T301	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	TRIML2	HGNC	ENSG00000179046	tier1	-	-	43	0	0.00	18	16	47.06
ADAMTS12	0	genome.wustl.edu	37	5	33561192	33561192	+	Missense_Mutation	SNP	G	G	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	5	33561192	33561192	G	C	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.4065	p.D1355E	0.998	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	tier1	-	-	77	0	0.00	29	37	56.06
KCTD14	0	genome.wustl.edu	37	11	77727734	77727734	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	11	77727734	77727734	C	A	SNP	KCTD14	ENST00000353172	human	ensembl	74_37	-1	known	missense	c.673	p.G225W	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD14	HGNC	ENSG00000151364	tier1	-	-	25	0	0.00	17	3	15.00
ODF1	0	genome.wustl.edu	37	8	103573011	103573037	+	In_Frame_Del	DEL	TGCAACCCCTGCAGCCCCTGCAACCCG	TGCAACCCCTGCAGCCCCTGCAACCCG	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	TGCAACCCCTGCAGCCCCTGCAACCCG	TGCAACCCCTGCAGCCCCTGCAACCCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	8	103573011	103573037	TGCAACCCCTGCAGCCCCTGCAACCCG	-	DEL	ODF1	ENST00000285402	human	ensembl	74_37	+1	known	in_frame_del	c.652_678	p.NPCSPCNPC219in_frame_del	0.995:0.998:0.993:0.606:0.498:0.829:0.957:0.993:0.985:0.985:0.958:0.001:0.001:0.001:0.728:0.987:0.994:0.989:0.990:0.972:0.003:0.001:0.000:0.002:0.891:0.887:0.486	NULL	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom	-	no_errors	ODF1	HGNC	ENSG00000155087	tier1			NA	NA	NA	NA	NA	NA
SGK223	0	genome.wustl.edu	37	8	8176387	8176388	+	In_Frame_Ins	INS	-	-	GGGGCG			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	8	8176387	8176388	-	GGGGCG	INS	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	in_frame_ins	c.3498_3497	p.1170in_frame_insPA	0.000:0.034	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319	tier1			NA	NA	NA	NA	NA	NA
ZNF555	0	genome.wustl.edu	37	19	2852664	2852664	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	2852664	2852664	G	T	SNP	ZNF555	ENST00000334241	human	ensembl	74_37	+1	known	missense	c.601	p.V201L	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF555	HGNC	ENSG00000186300	tier1	-	-	28	0	0.00	39	4	9.30
STAC2	0	genome.wustl.edu	37	17	37373336	37373336	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	17	37373336	37373336	C	T	SNP	STAC2	ENST00000333461	human	ensembl	74_37	-1	known	missense	c.488	p.G163D	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_SH3_domain,prints_p67phox	-	no_errors	STAC2	HGNC	ENSG00000141750	tier1	-	-	19	0	0.00	6	3	33.33
GRIN2A	0	genome.wustl.edu	37	16	9923461	9923461	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	16	9923461	9923461	C	A	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	missense	c.1826	p.W609L	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	tier1	-	-	60	0	0.00	33	4	10.81
ENSG00000221060	0	genome.wustl.edu	37	14	70270922	70270922	+	RNA	DEL	T	T	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	14	70270922	70270922	T	-	DEL	ENSG00000221060	ENST00000408133	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.003	-	-	-	no_errors	SNORA11	RFAM	ENSG00000221060	tier1			12	0	0.00	8	2	20.00
TCAIM	0	genome.wustl.edu	37	3	44442725	44442725	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	3	44442725	44442725	C	A	SNP	TCAIM	ENST00000342649	human	ensembl	74_37	+1	known	silent	c.1149	p.L383	0.316	NULL	NULL	-	no_errors	TCAIM	HGNC	ENSG00000179152	tier1	-	-	40	0	0.00	46	4	8.00
NEFL	0	genome.wustl.edu	37	8	24810424	24810426	+	RNA	DEL	CTT	CTT	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	8	24810424	24810426	CTT	-	DEL	NEFL	ENST00000221169	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000:1.000	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725	tier1			30	0	0.00	32	5	13.51
PSG8	0	genome.wustl.edu	37	19	43257095	43257096	+	RNA	INS	-	-	GGTTGAGATGGTTGAGA			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	43257095	43257096	-	GGTTGAGATGGTTGAGA	INS	PSG8	ENST00000600709	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.099:0.098	-	-	-	no_errors	PSG8	HGNC	ENSG00000124467	tier1			NA	NA	NA	NA	NA	NA
ENSG00000267520	0	genome.wustl.edu	37	2	61153076	61153076	+	RNA	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	2	61153076	61153076	C	A	SNP	ENSG00000267520	ENST00000589496	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.413	-	-	-	no_errors	RP11-373L24.1	Clone_based_vega_gene	ENSG00000267520	tier1	-	-	46	0	0.00	40	5	11.11
SMYD4	0	genome.wustl.edu	37	17	1686764	1686764	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	17	1686764	1686764	G	T	SNP	SMYD4	ENST00000305513	human	ensembl	74_37	-1	known	missense	c.2027	p.A676D	0.973	NULL	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532	tier1	-	-	90	0	0.00	26	4	13.33
UPF2	0	genome.wustl.edu	37	10	12070987	12070987	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	10	12070987	12070987	G	T	SNP	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	missense	c.902	p.S301Y	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	tier1	-	-	43	0	0.00	19	3	13.64
R3HCC1L	0	genome.wustl.edu	37	10	99967894	99967894	+	Missense_Mutation	SNP	G	G	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	10	99967894	99967894	G	A	SNP	R3HCC1L	ENST00000370584	human	ensembl	74_37	+1	known	missense	c.23	p.C8Y	1.000	NULL	NULL	-	no_errors	R3HCC1L	HGNC	ENSG00000166024	tier1	-	-	45	0	0.00	21	4	16.00
PDLIM3	0	genome.wustl.edu	37	4	186435435	186435435	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	186435435	186435435	C	A	SNP	PDLIM3	ENST00000284770	human	ensembl	74_37	-1	known	silent	c.387	p.P129	1.000	NULL	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM3	HGNC	ENSG00000154553	tier1	-	-	45	0	0.00	33	4	10.81
LENG8	0	genome.wustl.edu	37	19	54967914	54967914	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	54967914	54967914	C	A	SNP	LENG8	ENST00000326764	human	ensembl	74_37	+1	known	silent	c.1545	p.R515	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615	tier1	-	-	51	0	0.00	25	28	52.83
ENSG00000221060	0	genome.wustl.edu	37	14	70270921	70270922	+	RNA	INS	-	-	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	14	70270921	70270922	-	T	INS	ENSG00000221060	ENST00000408133	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001:0.003	-	-	-	no_errors	SNORA11	RFAM	ENSG00000221060	tier1			12	0	0.00	7	3	30.00
NCAPG	0	genome.wustl.edu	37	4	17814000	17814000	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	17814000	17814000	G	T	SNP	NCAPG	ENST00000251496	human	ensembl	74_37	+1	known	nonsense	c.268	p.E90*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NCAPG	HGNC	ENSG00000109805	tier1	-	-	56	0	0.00	53	5	8.62
PLA2G2A	0	genome.wustl.edu	37	1	20305466	20305467	+	RNA	INS	-	-	CACGCACACACA			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	20305466	20305467	-	CACGCACACACA	INS	PLA2G2A	ENST00000461140	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.006	-	-	-	no_errors	PLA2G2A	HGNC	ENSG00000188257	tier1			NA	NA	NA	NA	NA	NA
DVL2	0	genome.wustl.edu	37	17	7131008	7131008	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	17	7131008	7131008	C	A	SNP	DVL2	ENST00000005340	human	ensembl	74_37	-1	known	missense	c.1197	p.M399I	1.000	NULL	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_2,prints_Dishevelled_fam	-	no_errors	DVL2	HGNC	ENSG00000004975	tier1	-	-	57	0	0.00	23	4	14.81
AKAP11	0	genome.wustl.edu	37	13	42891697	42891697	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	13	42891697	42891697	C	T	SNP	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	missense	c.5438	p.T1813M	0.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	tier1	-	-	47	0	0.00	46	7	13.21
GLS2	0	genome.wustl.edu	37	12	56868879	56868879	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	12	56868879	56868879	C	A	SNP	GLS2	ENST00000311966	human	ensembl	74_37	-1	known	missense	c.945	p.K315N	1.000	pfam_Glutaminase,superfamily_Beta-lactam/transpept-like,tigrfam_Glutaminase	pfam_Glutaminase,pfam_Ankyrin_rpt,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_Glutaminase	-	no_errors	GLS2	HGNC	ENSG00000135423	tier1	-	-	30	0	0.00	38	4	9.52
SULT1B1	0	genome.wustl.edu	37	4	70620481	70620481	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	70620481	70620481	G	T	SNP	SULT1B1	ENST00000310613	human	ensembl	74_37	-1	known	missense	c.184	p.L62I	0.455	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1B1	HGNC	ENSG00000173597	tier1	-	-	57	0	0.00	40	4	9.09
SRPR	0	genome.wustl.edu	37	11	126134139	126134139	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	11	126134139	126134139	G	T	SNP	SRPR	ENST00000332118	human	ensembl	74_37	-1	known	missense	c.1735	p.P579T	1.000	pfam_SRP54_GTPase_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,smart_SRP54_GTPase_dom	pfam_Sig_recog_particle_rcpt_asu_N,pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	-	no_errors	SRPR	HGNC	ENSG00000182934	tier1	-	-	45	0	0.00	34	4	10.53
TSHZ1	0	genome.wustl.edu	37	18	72998202	72998202	+	Silent	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	18	72998202	72998202	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	silent	c.840	p.S280	0.999	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	tier1	-	-	42	0	0.00	27	33	55.00
ENSG00000241666	0	genome.wustl.edu	37	1	167599678	167599678	+	RNA	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	167599678	167599678	C	A	SNP	ENSG00000241666	ENST00000451992	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP3-455J7.4	Clone_based_vega_gene	ENSG00000241666	tier1	-	-	54	0	0.00	46	4	8.00
CACNA1B	0	genome.wustl.edu	37	9	141010020	141010020	+	Missense_Mutation	SNP	T	T	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	9	141010020	141010020	T	C	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.5669	p.L1890P	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	tier1	-	-	47	0	0.00	19	3	13.64
ZNF83	0	genome.wustl.edu	37	19	53121989	53121989	+	RNA	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	53121989	53121989	C	A	SNP	ZNF83	ENST00000596440	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF83	HGNC	ENSG00000167766	tier1	-	-	32	0	0.00	15	3	16.67
MCM9	0	genome.wustl.edu	37	6	119136406	119136406	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	6	119136406	119136406	C	A	SNP	MCM9	ENST00000316316	human	ensembl	74_37	-1	known	nonsense	c.3013	p.E1005*	0.988	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,prints_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	-	no_errors	MCM9	HGNC	ENSG00000111877	tier1	-	-	50	0	0.00	37	4	9.76
VTCN1	0	genome.wustl.edu	37	1	117699367	117699367	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	117699367	117699367	C	A	SNP	VTCN1	ENST00000359008	human	ensembl	74_37	-1	known	nonsense	c.283	p.E95*	0.936	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VTCN1	HGNC	ENSG00000134258	tier1	-	-	34	0	0.00	35	4	10.26
ZNF577	0	genome.wustl.edu	37	19	52383628	52383628	+	Frame_Shift_Del	DEL	T	T	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	52383628	52383628	T	-	DEL	ZNF577	ENST00000301399	human	ensembl	74_37	-1	known	frame_shift_del	c.8	p.N3fs	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF577	HGNC	ENSG00000161551	tier1			17	0	0.00	12	2	14.29
WDFY3	0	genome.wustl.edu	37	4	85642697	85642697	+	Silent	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	85642697	85642697	G	T	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	silent	c.7470	p.S2490	0.973	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	tier1	-	-	47	0	0.00	34	4	10.53
ENSG00000248996	0	genome.wustl.edu	37	5	176930503	176930503	+	RNA	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	5	176930503	176930503	C	A	SNP	ENSG00000248996	ENST00000506025	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-1334A24.6	Clone_based_vega_gene	ENSG00000248996	tier1	-	-	32	0	0.00	40	4	9.09
NDST3	0	genome.wustl.edu	37	4	119154221	119154221	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	119154221	119154221	C	T	SNP	NDST3	ENST00000296499	human	ensembl	74_37	+1	known	missense	c.1874	p.S625F	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST3	HGNC	ENSG00000164100	tier1	-	-	108	0	0.00	60	39	39.39
TUT1	0	genome.wustl.edu	37	11	62348654	62348654	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	11	62348654	62348654	G	T	SNP	TUT1	ENST00000308436	human	ensembl	74_37	-1	known	missense	c.728	p.S243Y	1.000	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016	tier1	-	-	23	0	0.00	15	3	16.67
ARHGAP35	0	genome.wustl.edu	37	19	47424701	47424701	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	47424701	47424701	C	A	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	silent	c.2769	p.P923	1.000	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	tier1	-	-	48	0	0.00	26	4	13.33
ENSG00000260682	0	genome.wustl.edu	37	16	81995798	81995809	+	RNA	DEL	GAATTGTATTTG	GAATTGTATTTG	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	GAATTGTATTTG	GAATTGTATTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	16	81995798	81995809	GAATTGTATTTG	-	DEL	ENSG00000260682	ENST00000363673	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000:0.000:0.001:0.000:0.000:0.002:0.002:0.000:0.000:0.001:0.001	-	-	-	no_errors	7SK	RFAM	ENSG00000260682	tier1			NA	NA	NA	NA	NA	NA
SYNGR4	0	genome.wustl.edu	37	19	48869112	48869112	+	Frame_Shift_Del	DEL	A	A	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	48869112	48869112	A	-	DEL	SYNGR4	ENST00000344846	human	ensembl	74_37	+1	known	frame_shift_del	c.13	p.S6fs	0.005	pirsf_Synaptogyrin	pfam_Marvel,pirsf_Synaptogyrin	-	no_errors	SYNGR4	HGNC	ENSG00000105467	tier1			40	0	0.00	10	2	16.67
DST	0	genome.wustl.edu	37	6	56438560	56438560	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	6	56438560	56438560	C	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	nonsense	c.13060	p.G4354*	0.995	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914	tier1	-	-	44	0	0.00	46	4	8.00
PTGDS	0	genome.wustl.edu	37	9	139873774	139873774	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	9	139873774	139873774	C	A	SNP	PTGDS	ENST00000224167	human	ensembl	74_37	+1	known	silent	c.354	p.P118	0.000	superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_PstgldnD_synth	-	no_errors	PTGDS	HGNC	ENSG00000107317	tier1	-	-	73	0	0.00	32	4	11.11
ITGB7	0	genome.wustl.edu	37	12	53589909	53589909	+	Silent	SNP	G	G	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	12	53589909	53589909	G	A	SNP	ITGB7	ENST00000267082	human	ensembl	74_37	-1	known	silent	c.891	p.D297	0.990	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Plexin-like_fold,superfamily_Integrin_bsu_tail,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB7	HGNC	ENSG00000139626	tier1	-	-	51	0	0.00	24	32	57.14
DCLRE1C	0	genome.wustl.edu	37	10	14951075	14951075	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	10	14951075	14951075	C	A	SNP	DCLRE1C	ENST00000378278	human	ensembl	74_37	-1	known	nonsense	c.1411	p.G471*	0.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457	tier1	-	-	32	0	0.00	11	3	21.43
RASEF	0	genome.wustl.edu	37	9	85630776	85630776	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	9	85630776	85630776	G	T	SNP	RASEF	ENST00000376447	human	ensembl	74_37	-1	known	missense	c.709	p.R237S	1.000	superfamily_Vinculin/catenin	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_Vinculin/catenin,smart_EF_hand_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_hand_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105	tier1	-	-	36	0	0.00	33	4	10.81
TM9SF3	0	genome.wustl.edu	37	10	98303896	98303896	+	Silent	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	10	98303896	98303896	G	T	SNP	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	silent	c.1122	p.A374	0.999	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147	tier1	-	-	62	0	0.00	20	3	13.04
DNM1P51	0	genome.wustl.edu	37	15	84957480	84957499	+	RNA	DEL	GGCCCCACATCCATTGAGAA	GGCCCCACATCCATTGAGAA	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	GGCCCCACATCCATTGAGAA	GGCCCCACATCCATTGAGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	15	84957480	84957499	GGCCCCACATCCATTGAGAA	-	DEL	DNM1P51	ENST00000558801	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.404:0.401:0.398:0.395:0.392:0.390:0.387:0.385:0.382:0.380:0.378:0.376:0.374:0.372:0.370:0.368:0.366:0.365:0.363:0.362	-	-	-	no_errors	DNM1P51	HGNC	ENSG00000235370	tier1			NA	NA	NA	NA	NA	NA
FGD1	0	genome.wustl.edu	37	X	54495293	54495293	+	Frame_Shift_Del	DEL	T	T	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	X	54495293	54495293	T	-	DEL	FGD1	ENST00000375135	human	ensembl	74_37	-1	known	frame_shift_del	c.1118	p.K373fs	1.000	superfamily_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302	tier1			51	0	0.00	30	4	11.76
PCDH20	0	genome.wustl.edu	37	13	61985538	61985538	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	13	61985538	61985538	C	A	SNP	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	missense	c.2694	p.L898F	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991	tier1	-	-	40	0	0.00	21	3	12.50
TCF4	0	genome.wustl.edu	37	18	52937080	52937080	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	18	52937080	52937080	C	A	SNP	TCF4	ENST00000398339	human	ensembl	74_37	-1	known	missense	c.1210	p.G404W	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF4	HGNC	ENSG00000196628	tier1	-	-	65	0	0.00	57	5	8.06
SRCAP	0	genome.wustl.edu	37	16	30734385	30734385	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	16	30734385	30734385	C	A	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	silent	c.3994	p.R1332	0.989	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	tier1	-	-	80	0	0.00	37	4	9.76
BCL2L12	0	genome.wustl.edu	37	19	50169166	50169166	+	Missense_Mutation	SNP	T	T	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	50169166	50169166	T	A	SNP	BCL2L12	ENST00000246785	human	ensembl	74_37	+1	known	missense	c.86	p.I29N	0.888	NULL	NULL	-	no_errors	BCL2L12	HGNC	ENSG00000126453	tier1	-	-	54	0	0.00	61	42	40.78
ECE2	0	genome.wustl.edu	37	3	184009139	184009139	+	Missense_Mutation	SNP	A	A	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	3	184009139	184009139	A	C	SNP	ECE2	ENST00000402825	human	ensembl	74_37	+1	known	missense	c.2387	p.K796T	0.106	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194	tier1	-	-	54	0	0.00	22	21	48.84
