Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PRR4	0	genome.wustl.edu	37	12	11035107	11035107	+	RNA	SNP	T	T	C			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	12	11035107	11035107	T	C	SNP	PRR4	ENST00000543626	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PRR4	HGNC	ENSG00000111215	tier1	rs2946841	-	13	0	0.00	7	5	41.67
CGN	0	genome.wustl.edu	37	1	151503079	151503079	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	1	151503079	151503079	G	T	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	missense	c.2428	p.A810S	0.001	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375	tier1	-	-	35	0	0.00	22	4	15.38
OR11G2	0	genome.wustl.edu	37	14	20666175	20666176	+	Frame_Shift_Ins	INS	-	-	A			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	14	20666175	20666176	-	A	INS	OR11G2	ENST00000357366	human	ensembl	74_37	+1	known	frame_shift_ins	c.681_682	p.G229fs	0.830:0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11G2	HGNC	ENSG00000196832	tier1			71	0	0.00	86	8	8.51
SLC23A2	0	genome.wustl.edu	37	20	4850569	4850569	+	Frame_Shift_Del	DEL	G	G	-			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	20	4850569	4850569	G	-	DEL	SLC23A2	ENST00000338244	human	ensembl	74_37	-1	known	frame_shift_del	c.1233	p.I412fs	0.974	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057	tier1			31	0	0.00	29	7	19.44
AOX2P	0	genome.wustl.edu	37	2	201619757	201619758	+	RNA	INS	-	-	TG			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	2	201619757	201619758	-	TG	INS	AOX2P	ENST00000472376	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AOX2P	HGNC	ENSG00000243478	tier1			11	0	0.00	15	7	31.82
MT-ND5	0	genome.wustl.edu	37	MT	12684	12684	+	Silent	SNP	G	G	A			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	MT	12684	12684	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	silent	c.348	p.Q116	NULL	pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786	tier1	rs28410409	-	188	0	0.00	25	6	19.35
MYO5B	0	genome.wustl.edu	37	18	47363917	47363917	+	Missense_Mutation	SNP	A	A	G			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	18	47363917	47363917	A	G	SNP	MYO5B	ENST00000285039	human	ensembl	74_37	-1	known	missense	c.5108	p.V1703A	1.000	pfam_Dil_domain,pfscan_Dilute	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	tier1	rs138128932	-	77	0	0.00	70	8	10.26
CCDC66	0	genome.wustl.edu	37	3	56650051	56650052	+	In_Frame_Ins	INS	-	-	CTT			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	3	56650051	56650052	-	CTT	INS	CCDC66	ENST00000394672	human	ensembl	74_37	+1	known	in_frame_ins	c.1813_1814	p.607in_frame_insS	0.002:0.009	NULL	NULL	-	no_errors	CCDC66	HGNC	ENSG00000180376	tier1			20	0	0.00	25	3	10.71
NOP56	0	genome.wustl.edu	37	20	2633378	2633379	+	RNA	INS	-	-	GAGCCTGGGCCT			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	20	2633378	2633379	-	GAGCCTGGGCCT	INS	NOP56	ENST00000469588	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	NOP56	HGNC	ENSG00000101361	tier1			NA	NA	NA	NA	NA	NA
GLIPR1L2	0	genome.wustl.edu	37	12	75816814	75816815	+	In_Frame_Ins	INS	-	-	ACA			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	12	75816814	75816815	-	ACA	INS	GLIPR1L2	ENST00000320460	human	ensembl	74_37	+1	known	in_frame_ins	c.715_716	p.240in_frame_insN	0.000:0.000	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	GLIPR1L2	HGNC	ENSG00000180481	tier1			28	0	0.00	22	2	8.33
HRNR	0	genome.wustl.edu	37	1	152188847	152188847	+	Missense_Mutation	SNP	A	A	G			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	1	152188847	152188847	A	G	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.5258	p.V1753A	0.002	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915	tier1	rs145667921	-	28	0	0.00	19	4	17.39
MT-CO1	0	genome.wustl.edu	37	MT	6733	6733	+	Missense_Mutation	SNP	T	T	A			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	MT	6733	6733	T	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.830	p.M277K	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	tier1	-	-	153	0	0.00	13	2	13.33
PPP2R2B	0	genome.wustl.edu	37	5	146258290	146258291	+	RNA	INS	-	-	GCTGCTGCT			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	5	146258290	146258291	-	GCTGCTGCT	INS	PPP2R2B	ENST00000530902	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.975:0.996	-	-	-	no_errors	PPP2R2B	HGNC	ENSG00000156475	tier1			NA	NA	NA	NA	NA	NA
AHDC1	0	genome.wustl.edu	37	1	27878567	27878567	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	1	27878567	27878567	G	T	SNP	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	missense	c.60	p.D20E	1.000	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705	tier1	-	-	26	0	0.00	11	3	21.43
ENSG00000269349	0	genome.wustl.edu	37	19	53015488	53015488	+	RNA	DEL	G	G	-			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	19	53015488	53015488	G	-	DEL	ENSG00000269349	ENST00000599143	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTD-3099C6.5	Clone_based_vega_gene	ENSG00000269349	tier1			43	0	0.00	36	4	10.00
ETV5	0	genome.wustl.edu	37	3	185823280	185823280	+	Missense_Mutation	SNP	A	A	G			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	3	185823280	185823280	A	G	SNP	ETV5	ENST00000537818	human	ensembl	74_37	-1	known	missense	c.265	p.F89L	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV5	HGNC	ENSG00000244405	tier1	-	-	36	0	0.00	39	11	22.00
HYDIN	0	genome.wustl.edu	37	16	70841824	70841824	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	16	70841824	70841824	C	T	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.15025	p.A5009T	0.000	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	tier1	rs199657414	-	42	0	0.00	68	11	13.92
MYB	0	genome.wustl.edu	37	6	135518225	135518225	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	6	135518225	135518225	G	A	SNP	MYB	ENST00000341911	human	ensembl	74_37	+1	known	missense	c.1330	p.A444T	0.965	NULL	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	tier1	-	-	38	0	0.00	36	4	10.00
TRPA1	0	genome.wustl.edu	37	8	72935420	72935458	+	RNA	DEL	GCATAGGTTTTAACCTCGGTCCCTTCTGAATGTAGGAAC	GCATAGGTTTTAACCTCGGTCCCTTCTGAATGTAGGAAC	-			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	GCATAGGTTTTAACCTCGGTCCCTTCTGAATGTAGGAAC	GCATAGGTTTTAACCTCGGTCCCTTCTGAATGTAGGAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	8	72935420	72935458	GCATAGGTTTTAACCTCGGTCCCTTCTGAATGTAGGAAC	-	DEL	TRPA1	ENST00000520596	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.002:0.002:0.000:0.000:0.000:0.000:0.000:0.001:0.002:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	TRPA1	HGNC	ENSG00000104321	tier1			NA	NA	NA	NA	NA	NA
ENSG00000259241	0	genome.wustl.edu	37	15	51987959	51987960	+	RNA	INS	-	-	A			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	15	51987959	51987960	-	A	INS	ENSG00000259241	ENST00000559918	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.006	-	-	-	no_errors	RP11-313P18.2	Clone_based_vega_gene	ENSG00000259241	tier1			15	0	0.00	14	4	22.22
MPC2	0	genome.wustl.edu	37	1	167893759	167893759	+	Silent	SNP	G	G	A			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	1	167893759	167893759	G	A	SNP	MPC2	ENST00000271373	human	ensembl	74_37	-1	known	silent	c.126	p.F42	1.000	pfam_MPC	pfam_MPC	-	no_errors	MPC2	HGNC	ENSG00000143158	tier1	rs9618	-	34	0	0.00	42	5	10.64
MEI1	0	genome.wustl.edu	37	22	42154486	42154486	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	22	42154486	42154486	G	T	SNP	MEI1	ENST00000401548	human	ensembl	74_37	+1	known	missense	c.2069	p.R690I	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077	tier1	-	-	34	0	0.00	40	4	9.09
SLC7A13	0	genome.wustl.edu	37	8	87226635	87226642	+	Frame_Shift_Del	DEL	CCGACATC	CCGACATC	-			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	CCGACATC	CCGACATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	8	87226635	87226642	CCGACATC	-	DEL	SLC7A13	ENST00000297524	human	ensembl	74_37	-1	known	frame_shift_del	c.1420_1413	p.*471fs	0.020:0.001:0.000:0.000:0.000:0.001:0.001:0.000	NULL	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A13	HGNC	ENSG00000164893	tier1			NA	NA	NA	NA	NA	NA
LOC440518	0	genome.wustl.edu	37	19	22784767	22784769	+	RNA	DEL	AGA	AGA	-			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	19	22784767	22784769	AGA	-	DEL	LOC440518	ENST00000600260	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012:0.014:0.016	-	-	-	no_errors	CTC-457E21.3	Clone_based_vega_gene	ENSG00000269332	tier1			12	0	0.00	6	5	45.45
COX20	0	genome.wustl.edu	37	1	245006492	245006493	+	RNA	INS	-	-	AGAAA			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	1	245006492	245006493	-	AGAAA	INS	COX20	ENST00000391839	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	COX20	HGNC	ENSG00000203667	tier1			NA	NA	NA	NA	NA	NA
SCML4	0	genome.wustl.edu	37	6	108042142	108042142	+	Nonsense_Mutation	SNP	G	G	T			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	6	108042142	108042142	G	T	SNP	SCML4	ENST00000369021	human	ensembl	74_37	-1	known	nonsense	c.651	p.Y217*	0.512	NULL	pfam_DUF3588	-	no_errors	SCML4	HGNC	ENSG00000146285	tier1	-	-	46	0	0.00	45	4	8.16
TBC1D2	0	genome.wustl.edu	37	9	100961831	100961831	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	9	100961831	100961831	G	T	SNP	TBC1D2	ENST00000375066	human	ensembl	74_37	-1	known	missense	c.2586	p.F862L	0.042	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383	tier1	-	-	43	0	0.00	41	4	8.89
LY6G6C	0	genome.wustl.edu	37	6	31686882	31686882	+	Silent	SNP	C	C	A			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	6	31686882	31686882	C	A	SNP	LY6G6C	ENST00000375819	human	ensembl	74_37	-1	known	silent	c.369	p.L123	0.964	NULL	NULL	-	no_errors	LY6G6C	HGNC	ENSG00000204421	tier1	-	-	26	0	0.00	22	4	15.38
NOP9	0	genome.wustl.edu	37	14	24769849	24769850	+	In_Frame_Ins	INS	-	-	GAGGAG			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	14	24769849	24769850	-	GAGGAG	INS	NOP9	ENST00000267425	human	ensembl	74_37	+1	known	in_frame_ins	c.483_484	p.165in_frame_insEE	0.000:0.015	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt	-	no_errors	NOP9	HGNC	ENSG00000196943	tier1			NA	NA	NA	NA	NA	NA
ARHGEF9	0	genome.wustl.edu	37	X	62898428	62898429	+	Frame_Shift_Ins	INS	-	-	A			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	X	62898428	62898429	-	A	INS	ARHGEF9	ENST00000253401	human	ensembl	74_37	-1	known	frame_shift_ins	c.586_585	p.E195fs	1.000:0.981	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089	tier1			25	0	0.00	21	9	30.00
CASP5	0	genome.wustl.edu	37	11	104878041	104878041	+	Frame_Shift_Del	DEL	T	T	-			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	11	104878041	104878041	T	-	DEL	CASP5	ENST00000393141	human	ensembl	74_37	-1	known	frame_shift_del	c.241	p.T81fs	0.000	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757	tier1			24	0	0.00	30	5	14.29
MT-ND5	0	genome.wustl.edu	37	MT	13177	13177	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	MT	13177	13177	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.841	p.G281S	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786	tier1	-	-	216	0	0.00	20	6	23.08
TMEM141	0	genome.wustl.edu	37	9	139687452	139687495	+	RNA	DEL	CCCAACCTGGGACCTGCCCAGGAGGTTGGAGCAGAAAGGGCTCT	CCCAACCTGGGACCTGCCCAGGAGGTTGGAGCAGAAAGGGCTCT	-			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	CCCAACCTGGGACCTGCCCAGGAGGTTGGAGCAGAAAGGGCTCT	CCCAACCTGGGACCTGCCCAGGAGGTTGGAGCAGAAAGGGCTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	9	139687452	139687495	CCCAACCTGGGACCTGCCCAGGAGGTTGGAGCAGAAAGGGCTCT	-	DEL	TMEM141	ENST00000465017	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.003:0.010:0.014:0.025:0.055:0.074:0.106:0.128:0.137:0.122:0.015:0.004:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.008:0.042:0.050:0.053:0.036:0.005:0.000:0.000:0.000:0.002:0.000:0.000:0.000:0.001	-	-	-	no_errors	TMEM141	HGNC	ENSG00000244187	tier1			NA	NA	NA	NA	NA	NA
LOC101927209	0	genome.wustl.edu	37	1	142621177	142621177	+	RNA	SNP	A	A	T			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	1	142621177	142621177	A	T	SNP	LOC101927209	ENST00000412092	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	RP11-417J8.3	Clone_based_vega_gene	ENSG00000230880	tier1	-	-	70	0	0.00	64	8	11.11
KDM5B	0	genome.wustl.edu	37	1	202709871	202709871	+	Silent	SNP	G	G	A			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	1	202709871	202709871	G	A	SNP	KDM5B	ENST00000367264	human	ensembl	74_37	-1	known	silent	c.3123	p.P1041	1.000	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	tier1	-	-	42	0	0.00	29	4	12.12
LRBA	0	genome.wustl.edu	37	4	151186065	151186069	+	RNA	DEL	AACAA	AACAA	-			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	AACAA	AACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	4	151186065	151186069	AACAA	-	DEL	LRBA	ENST00000503716	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005:0.005:0.005:0.005:0.004	-	-	-	no_errors	LRBA	HGNC	ENSG00000198589	tier1			NA	NA	NA	NA	NA	NA
MT-ND5	0	genome.wustl.edu	37	MT	12705	12705	+	Silent	SNP	C	C	T			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	MT	12705	12705	C	T	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	silent	c.369	p.I123	NULL	pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786	tier1	rs2854122	-	178	0	0.00	19	5	20.83
NYAP2	0	genome.wustl.edu	37	2	226516263	226516263	+	Silent	SNP	G	G	A			TCGA-K1-A3PO-01A-11D-A21Q-09	TCGA-K1-A3PO-11A-12D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	11bb5036-42ef-479e-b619-46a4aa3ed5cb	b2c9d18c-b494-450b-88ea-23fd0434115e	2	226516263	226516263	G	A	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	silent	c.1944	p.S648	1.000	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460	tier1	-	-	44	0	0.00	44	10	18.52
