Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AFF2	0	genome.wustl.edu	37	X	148038143	148038143	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	X	148038143	148038143	G	T	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	missense	c.2568	p.K856N	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	tier1	-	-	35	0	0.00	43	4	8.51
SH3GLB1	0	genome.wustl.edu	37	1	87194113	87194113	+	Missense_Mutation	SNP	G	G	C			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	1	87194113	87194113	G	C	SNP	SH3GLB1	ENST00000482504	human	ensembl	74_37	+1	known	missense	c.598	p.D200H	1.000	pfam_BAR_dom,pfam_BAR_dom-cont,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB1	HGNC	ENSG00000097033	tier1	-	-	46	0	0.00	44	4	8.33
MMP3	0	genome.wustl.edu	37	11	102713509	102713509	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	11	102713509	102713509	C	T	SNP	MMP3	ENST00000299855	human	ensembl	74_37	-1	known	missense	c.244	p.D82N	0.000	pirsf_Pept_M10A_Metazoans,pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP3	HGNC	ENSG00000149968	tier1	-	-	44	0	0.00	44	4	8.33
JAG1	0	genome.wustl.edu	37	20	10620502	10620502	+	Missense_Mutation	SNP	T	T	C			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	20	10620502	10620502	T	C	SNP	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	missense	c.3301	p.S1101G	1.000	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384	tier1	-	-	56	0	0.00	66	9	12.00
PCLO	0	genome.wustl.edu	37	7	82784690	82784690	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	7	82784690	82784690	G	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.1267	p.Q423K	0.826	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	tier1	-	-	30	0	0.00	42	4	8.70
FBXO2	0	genome.wustl.edu	37	1	11710779	11710780	+	In_Frame_Ins	INS	-	-	GCG			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	1	11710779	11710780	-	GCG	INS	FBXO2	ENST00000354287	human	ensembl	74_37	-1	known	in_frame_ins	c.135_134	p.46in_frame_insA	0.915:0.821	superfamily_F-box_dom,pfscan_F-box_dom	pfam_F-box-assoc_dom,pfam_F-box_dom,superfamily_Galactose-bd-like,superfamily_F-box_dom,pfscan_F-box_dom,pfscan_F-box-assoc_dom	-	no_errors	FBXO2	HGNC	ENSG00000116661	tier1			13	0	0.00	19	4	17.39
NEB	0	genome.wustl.edu	37	2	152512817	152512817	+	Silent	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	2	152512817	152512817	G	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.6345	p.T2115	0.951	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091	tier1	-	-	30	0	0.00	31	4	11.11
MBOAT4	0	genome.wustl.edu	37	8	29989494	29989494	+	Silent	SNP	A	A	G			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	8	29989494	29989494	A	G	SNP	MBOAT4	ENST00000320542	human	ensembl	74_37	-1	known	silent	c.1273	p.L425	0.060	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT4	HGNC	ENSG00000177669	tier1	-	-	41	0	0.00	39	5	11.36
TP53	0	genome.wustl.edu	37	17	7577142	7577142	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	17	7577142	7577142	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.796	p.G266R	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	23	0	0.00	46	9	16.36
STK3	0	genome.wustl.edu	37	8	99539036	99539036	+	Silent	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	8	99539036	99539036	G	T	SNP	STK3	ENST00000419617	human	ensembl	74_37	-1	known	silent	c.1251	p.P417	0.996	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Mst1_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SARAH_dom,pfscan_Prot_kinase_dom	-	no_errors	STK3	HGNC	ENSG00000104375	tier1	-	-	44	0	0.00	25	3	10.34
TM9SF2	0	genome.wustl.edu	37	13	100192902	100192902	+	RNA	DEL	T	T	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	13	100192902	100192902	T	-	DEL	TM9SF2	ENST00000466555	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.045	-	-	-	no_errors	TM9SF2	HGNC	ENSG00000125304	tier1			24	0	0.00	20	4	16.67
SCAP	0	genome.wustl.edu	37	3	47470002	47470002	+	Splice_Site	SNP	C	C	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	3	47470002	47470002	C	T	SNP	SCAP	ENST00000265565	human	ensembl	74_37	-1	known	splice_site	c.410+1	e3+1	1.000	-	-	-	no_errors	SCAP	HGNC	ENSG00000114650	tier1	-	-	75	0	0.00	106	10	8.55
VANGL2	0	genome.wustl.edu	37	1	160394931	160394931	+	Silent	SNP	G	G	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	1	160394931	160394931	G	A	SNP	VANGL2	ENST00000368061	human	ensembl	74_37	+1	known	silent	c.1329	p.A443	0.077	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	tier1	rs146767141	GMAF=0.0005	56	0	0.00	58	10	14.71
C11orf80	0	genome.wustl.edu	37	11	66512290	66512291	+	In_Frame_Ins	INS	-	-	GGC			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	11	66512290	66512291	-	GGC	INS	C11orf80	ENST00000360962	human	ensembl	74_37	+1	known	in_frame_ins	c.77_78	p.30in_frame_insA	0.001:0.003	NULL	NULL	-	no_errors	C11orf80	HGNC	ENSG00000173715	tier1			8	0	0.00	27	7	20.59
FSIP2	0	genome.wustl.edu	37	2	186657269	186657269	+	Silent	SNP	C	C	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	2	186657269	186657269	C	A	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	silent	c.5673	p.L1891	0.013	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	tier1	-	-	60	0	0.00	29	3	9.38
CX3CL1	0	genome.wustl.edu	37	16	57416150	57416150	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	16	57416150	57416150	G	A	SNP	CX3CL1	ENST00000006053	human	ensembl	74_37	+1	known	missense	c.400	p.E134K	0.000	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CX3CL1	-	no_errors	CX3CL1	HGNC	ENSG00000006210	tier1	-	-	109	0	0.00	118	14	10.53
FMO5	0	genome.wustl.edu	37	1	146658796	146658796	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	1	146658796	146658796	G	T	SNP	FMO5	ENST00000254090	human	ensembl	74_37	-1	known	missense	c.1285	p.Q429K	1.000	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_2	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_2,prints_Flavin_mOase_1	-	no_errors	FMO5	HGNC	ENSG00000131781	tier1	-	-	28	0	0.00	21	3	12.50
APPL2	0	genome.wustl.edu	37	12	105597501	105597501	+	Silent	SNP	G	G	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	12	105597501	105597501	G	A	SNP	APPL2	ENST00000551662	human	ensembl	74_37	-1	known	silent	c.702	p.S234	0.806	NULL	pfam_PTB/PI_dom,pfam_Pleckstrin_homology,pfam_PTB,smart_Pleckstrin_homology,smart_PTB/PI_dom,pfscan_Pleckstrin_homology,pfscan_PTB/PI_dom	-	no_errors	APPL2	HGNC	ENSG00000136044	tier1	-	-	151	0	0.00	198	18	8.33
ATAD2B	0	genome.wustl.edu	37	2	24149446	24149446	+	Silent	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	2	24149446	24149446	G	T	SNP	ATAD2B	ENST00000238789	human	ensembl	74_37	-1	known	silent	c.195	p.G65	0.895	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778	tier1	-	-	10	0	0.00	6	4	36.36
XYLB	0	genome.wustl.edu	37	3	38411731	38411732	+	RNA	INS	-	-	CACA			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	3	38411731	38411732	-	CACA	INS	XYLB	ENST00000487569	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	XYLB	HGNC	ENSG00000093217	tier1			10	0	0.00	18	4	18.18
UCHL3	0	genome.wustl.edu	37	13	76179970	76179970	+	RNA	DEL	A	A	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	13	76179970	76179970	A	-	DEL	UCHL3	ENST00000606347	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UCHL3	HGNC	ENSG00000118939	tier1			24	0	0.00	21	2	8.70
DEAF1	0	genome.wustl.edu	37	11	680002	680003	+	RNA	INS	-	-	ACCAGGATG			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	11	680002	680003	-	ACCAGGATG	INS	DEAF1	ENST00000525904	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	DEAF1	HGNC	ENSG00000177030	tier1			NA	NA	NA	NA	NA	NA
ENSG00000273192	0	genome.wustl.edu	37	22	50297769	50297769	+	RNA	SNP	C	C	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	22	50297769	50297769	C	T	SNP	ENSG00000273192	ENST00000610245	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CITF22-1A6.3	Clone_based_vega_gene	ENSG00000273192	tier1	-	-	141	0	0.00	185	19	9.31
AGBL5	0	genome.wustl.edu	37	2	27282286	27282286	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	2	27282286	27282286	G	T	SNP	AGBL5	ENST00000323064	human	ensembl	74_37	+1	known	missense	c.2103	p.W701C	1.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693	tier1	-	-	73	0	0.00	102	14	12.07
LRTM1	0	genome.wustl.edu	37	3	54952751	54952751	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	3	54952751	54952751	G	T	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	missense	c.773	p.P258H	0.001	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771	tier1	-	-	41	0	0.00	46	4	8.00
PEG3	0	genome.wustl.edu	37	19	57327590	57327590	+	Silent	SNP	A	A	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	19	57327590	57327590	A	T	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	silent	c.2220	p.P740	0.056	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	tier1	-	-	37	0	0.00	53	5	8.62
ABCA1	0	genome.wustl.edu	37	9	107576725	107576725	+	Missense_Mutation	SNP	A	A	G			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	9	107576725	107576725	A	G	SNP	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	missense	c.3770	p.V1257A	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	tier1	-	-	36	0	0.00	64	6	8.57
LRRK2	0	genome.wustl.edu	37	12	40677723	40677723	+	Missense_Mutation	SNP	A	A	G			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	12	40677723	40677723	A	G	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.2288	p.N763S	0.002	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	tier1	-	-	34	0	0.00	22	3	12.00
PLEKHG1	0	genome.wustl.edu	37	6	151125824	151125824	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	6	151125824	151125824	G	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	missense	c.859	p.A287T	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	tier1	-	-	32	0	0.00	45	4	8.16
C1orf35	0	genome.wustl.edu	37	1	228289201	228289201	+	RNA	SNP	C	C	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	1	228289201	228289201	C	A	SNP	C1orf35	ENST00000469781	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C1orf35	HGNC	ENSG00000143793	tier1	-	-	34	0	0.00	46	4	8.00
ALG3	0	genome.wustl.edu	37	3	183960782	183960782	+	RNA	SNP	T	T	G			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	3	183960782	183960782	T	G	SNP	ALG3	ENST00000463495	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ALG3	HGNC	ENSG00000214160	tier1	rs200645083	GMAF=0.0005	38	0	0.00	29	5	14.71
GDPD5	0	genome.wustl.edu	37	11	75153941	75153941	+	RNA	DEL	C	C	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	11	75153941	75153941	C	-	DEL	GDPD5	ENST00000527322	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GDPD5	HGNC	ENSG00000158555	tier1			8	0	0.00	11	2	15.38
NDUFA9	0	genome.wustl.edu	37	12	4794302	4794302	+	Frame_Shift_Del	DEL	A	A	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	12	4794302	4794302	A	-	DEL	NDUFA9	ENST00000540688	human	ensembl	74_37	+1	putative	frame_shift_del	c.51	p.K20fs	0.000	NULL	NULL	-	no_errors	NDUFA9	HGNC	ENSG00000139180	tier1			15	0	0.00	19	3	13.64
GSG1	0	genome.wustl.edu	37	12	13243611	13243611	+	Nonsense_Mutation	SNP	C	C	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	12	13243611	13243611	C	A	SNP	GSG1	ENST00000324458	human	ensembl	74_37	-1	known	nonsense	c.190	p.E64*	1.000	pfam_GSG-1	pfam_GSG-1	-	no_errors	GSG1	HGNC	ENSG00000111305	tier1	-	-	30	0	0.00	46	4	8.00
PKHD1	0	genome.wustl.edu	37	6	51609282	51609282	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	6	51609282	51609282	G	T	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.10057	p.L3353I	1.000	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	tier1	-	-	33	0	0.00	38	4	9.52
ZNF674	0	genome.wustl.edu	37	X	46360436	46360436	+	Frame_Shift_Del	DEL	A	A	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	X	46360436	46360436	A	-	DEL	ZNF674	ENST00000523374	human	ensembl	74_37	-1	known	frame_shift_del	c.588	p.F196fs	0.054	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF674	HGNC	ENSG00000251192	tier1			11	0	0.00	18	2	10.00
WDR55	0	genome.wustl.edu	37	5	140048683	140048683	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	5	140048683	140048683	G	A	SNP	WDR55	ENST00000358337	human	ensembl	74_37	+1	known	missense	c.680	p.C227Y	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314	tier1	-	-	65	0	0.00	76	8	9.52
WRB	0	genome.wustl.edu	37	21	40768975	40768975	+	RNA	DEL	T	T	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	21	40768975	40768975	T	-	DEL	WRB	ENST00000466787	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WRB	HGNC	ENSG00000182093	tier1			29	0	0.00	23	5	17.86
DNAJC13	0	genome.wustl.edu	37	3	132165329	132165329	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	3	132165329	132165329	G	T	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.79	p.V27F	1.000	NULL	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246	tier1	-	-	67	0	0.00	45	4	8.16
ALDH9A1	0	genome.wustl.edu	37	1	165638239	165638239	+	Silent	SNP	C	C	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	1	165638239	165638239	C	A	SNP	ALDH9A1	ENST00000354775	human	ensembl	74_37	-1	known	silent	c.1131	p.V377	0.795	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH9A1	HGNC	ENSG00000143149	tier1	-	-	42	0	0.00	37	4	9.76
SLC18A2	0	genome.wustl.edu	37	10	119001250	119001250	+	Missense_Mutation	SNP	C	C	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	10	119001250	119001250	C	A	SNP	SLC18A2	ENST00000298472	human	ensembl	74_37	+1	known	missense	c.46	p.R16S	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646	tier1	-	-	17	0	0.00	17	4	19.05
LUZP1	0	genome.wustl.edu	37	1	23420544	23420544	+	Silent	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	1	23420544	23420544	G	T	SNP	LUZP1	ENST00000302291	human	ensembl	74_37	-1	known	silent	c.211	p.R71	1.000	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	tier1	-	-	30	0	0.00	43	4	8.51
ENSG00000221810	0	genome.wustl.edu	37	5	92053196	92053197	+	RNA	INS	-	-	ATAC			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	5	92053196	92053197	-	ATAC	INS	ENSG00000221810	ENST00000408883	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	AC026781.1	Clone_based_ensembl_gene	ENSG00000221810	tier1			19	0	0.00	15	3	16.67
TES	0	genome.wustl.edu	37	7	115897455	115897455	+	Missense_Mutation	SNP	C	C	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	7	115897455	115897455	C	A	SNP	TES	ENST00000358204	human	ensembl	74_37	+1	known	missense	c.1185	p.S395R	1.000	pfam_Znf_LIM,smart_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TES	HGNC	ENSG00000135269	tier1	-	-	32	0	0.00	19	3	13.64
PTPRU	0	genome.wustl.edu	37	1	29644393	29644393	+	Missense_Mutation	SNP	A	A	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	1	29644393	29644393	A	T	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.3677	p.D1226V	0.972	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656	tier1	-	-	50	0	0.00	73	8	9.88
UBN2	0	genome.wustl.edu	37	7	138968377	138968377	+	Missense_Mutation	SNP	C	C	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	7	138968377	138968377	C	A	SNP	UBN2	ENST00000473989	human	ensembl	74_37	+1	known	missense	c.2726	p.S909Y	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741	tier1	-	-	45	0	0.00	37	4	9.76
NDST4	0	genome.wustl.edu	37	4	115749050	115749050	+	Silent	SNP	C	C	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	4	115749050	115749050	C	A	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	silent	c.2541	p.V847	1.000	superfamily_P-loop_NTPase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653	tier1	-	-	44	0	0.00	31	4	11.43
USP36	0	genome.wustl.edu	37	17	76798549	76798554	+	In_Frame_Del	DEL	TTTTTC	TTTTTC	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	TTTTTC	TTTTTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	17	76798549	76798554	TTTTTC	-	DEL	USP36	ENST00000312010	human	ensembl	74_37	-1	known	in_frame_del	c.2879_2874	p.KK959in_frame_del	0.178:0.173:0.043:0.038:0.100:0.107	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP36	HGNC	ENSG00000055483	tier1			NA	NA	NA	NA	NA	NA
TTN	0	genome.wustl.edu	37	2	179539093	179539093	+	Silent	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	2	179539093	179539093	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.30753	p.I10251	0.999	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	77	0	0.00	53	5	8.62
PRPF3	0	genome.wustl.edu	37	1	150315720	150315728	+	RNA	DEL	AAAAAATAT	AAAAAATAT	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	AAAAAATAT	AAAAAATAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	1	150315720	150315728	AAAAAATAT	-	DEL	PRPF3	ENST00000493553	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001:0.000:0.001:0.000:0.001:0.001:0.002:0.004	-	-	-	no_errors	PRPF3	HGNC	ENSG00000117360	tier1			NA	NA	NA	NA	NA	NA
RNF220	0	genome.wustl.edu	37	1	45097823	45097823	+	RNA	SNP	G	G	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	1	45097823	45097823	G	A	SNP	RNF220	ENST00000471494	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNF220	HGNC	ENSG00000187147	tier1	-	-	127	0	0.00	217	21	8.79
DGKH	0	genome.wustl.edu	37	13	42793907	42793907	+	Missense_Mutation	SNP	A	A	C			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	13	42793907	42793907	A	C	SNP	DGKH	ENST00000337343	human	ensembl	74_37	+1	known	missense	c.3419	p.K1140T	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780	tier1	-	-	37	0	0.00	40	5	11.11
LAMA2	0	genome.wustl.edu	37	6	129637283	129637283	+	Missense_Mutation	SNP	A	A	G			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	6	129637283	129637283	A	G	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.4025	p.K1342R	1.000	pfam_Laminin_B_type_IV,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	tier1	-	-	54	0	0.00	65	7	9.72
CYP19A1	0	genome.wustl.edu	37	15	51503060	51503060	+	Frame_Shift_Del	DEL	T	T	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	15	51503060	51503060	T	-	DEL	CYP19A1	ENST00000260433	human	ensembl	74_37	-1	known	frame_shift_del	c.1457	p.N486fs	0.000	superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP19A1	HGNC	ENSG00000137869	tier1			32	0	0.00	28	3	9.68
CIDEA	0	genome.wustl.edu	37	18	12254562	12254563	+	Frame_Shift_Ins	INS	-	-	CCGCGCACACACCCAT			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	18	12254562	12254563	-	CCGCGCACACACCCAT	INS	CIDEA	ENST00000522713	human	ensembl	74_37	+1	known	frame_shift_ins	c.180_181	p.H64fs	0.077:0.122	NULL	NULL	-	no_errors	CIDEA	HGNC	ENSG00000176194	tier1			NA	NA	NA	NA	NA	NA
ZDHHC11B	0	genome.wustl.edu	37	5	711614	711614	+	RNA	SNP	C	C	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	5	711614	711614	C	A	SNP	ZDHHC11B	ENST00000522356	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZDHHC11B	HGNC	ENSG00000206077	tier1	-	-	20	0	0.00	15	3	16.67
STAM	0	genome.wustl.edu	37	10	17738849	17738849	+	Silent	SNP	C	C	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	10	17738849	17738849	C	A	SNP	STAM	ENST00000377524	human	ensembl	74_37	+1	known	silent	c.804	p.L268	0.971	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM	HGNC	ENSG00000136738	tier1	-	-	30	0	0.00	30	4	11.43
SGTA	0	genome.wustl.edu	37	19	2757763	2757763	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	19	2757763	2757763	G	A	SNP	SGTA	ENST00000221566	human	ensembl	74_37	-1	known	missense	c.755	p.S252L	0.964	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SGTA	HGNC	ENSG00000104969	tier1	-	-	113	0	0.00	151	14	8.43
BPIFB3	0	genome.wustl.edu	37	20	31652609	31652609	+	Silent	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	20	31652609	31652609	G	T	SNP	BPIFB3	ENST00000375494	human	ensembl	74_37	+1	known	silent	c.882	p.L294	1.000	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB3	HGNC	ENSG00000186190	tier1	-	-	28	0	0.00	57	5	8.06
POLE	0	genome.wustl.edu	37	12	133208932	133208932	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	12	133208932	133208932	G	T	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	missense	c.6299	p.P2100H	1.000	NULL	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	tier1	-	-	30	0	0.00	39	4	9.30
ITPR1	0	genome.wustl.edu	37	3	4836803	4836803	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	3	4836803	4836803	C	T	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.6818	p.S2273L	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	tier1	-	-	101	0	0.00	125	11	8.09
ZC3H18	0	genome.wustl.edu	37	16	88643648	88643648	+	Silent	SNP	C	C	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	16	88643648	88643648	C	T	SNP	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	silent	c.117	p.D39	0.063	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545	tier1	-	-	84	0	0.00	113	14	10.94
KIAA1731	0	genome.wustl.edu	37	11	93432279	93432279	+	Frame_Shift_Del	DEL	C	C	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	11	93432279	93432279	C	-	DEL	KIAA1731	ENST00000411936	human	ensembl	74_37	+1	known	frame_shift_del	c.4201	p.P1401fs	0.000	NULL	NULL	-	no_errors	KIAA1731	HGNC	ENSG00000166004	tier1			13	0	0.00	17	2	10.53
LCN8	0	genome.wustl.edu	37	9	139649957	139649957	+	Missense_Mutation	SNP	T	T	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	9	139649957	139649957	T	A	SNP	LCN8	ENST00000371688	human	ensembl	74_37	-1	known	missense	c.238	p.I80F	0.991	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	-	no_errors	LCN8	HGNC	ENSG00000204001	tier1	-	-	112	0	0.00	175	18	9.33
THADA	0	genome.wustl.edu	37	2	43458367	43458367	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	2	43458367	43458367	C	T	SNP	THADA	ENST00000405006	human	ensembl	74_37	-1	known	missense	c.5582	p.R1861H	0.000	NULL	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	tier1	-	-	56	0	0.00	69	8	10.26
FGD6	0	genome.wustl.edu	37	12	95603287	95603287	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	12	95603287	95603287	G	T	SNP	FGD6	ENST00000343958	human	ensembl	74_37	-1	known	missense	c.1773	p.N591K	0.001	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263	tier1	-	-	30	0	0.00	44	4	8.33
LGALS9C	0	genome.wustl.edu	37	17	18380164	18380165	+	RNA	DEL	GA	GA	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	17	18380164	18380165	GA	-	DEL	LGALS9C	ENST00000578983	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	LGALS9C	HGNC	ENSG00000171916	tier1			110	0	0.00	123	19	13.38
TMEFF1	0	genome.wustl.edu	37	9	103271362	103271362	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	9	103271362	103271362	G	A	SNP	TMEFF1	ENST00000374879	human	ensembl	74_37	+1	known	missense	c.382	p.A128T	1.000	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom,pfscan_EG-like_dom	-	no_errors	TMEFF1	HGNC	ENSG00000241697	tier1	-	-	41	0	0.00	39	4	9.30
CHD9	0	genome.wustl.edu	37	16	53190179	53190179	+	Missense_Mutation	SNP	C	C	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	16	53190179	53190179	C	A	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	missense	c.178	p.P60T	0.960	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	tier1	-	-	51	0	0.00	35	4	10.26
ELMO2	0	genome.wustl.edu	37	20	45017815	45017815	+	Silent	SNP	G	G	A			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	20	45017815	45017815	G	A	SNP	ELMO2	ENST00000439931	human	ensembl	74_37	-1	known	silent	c.288	p.N96	0.998	superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598	tier1	-	-	32	0	0.00	37	4	9.76
STOML2	0	genome.wustl.edu	37	9	35101135	35101135	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	9	35101135	35101135	C	T	SNP	STOML2	ENST00000356493	human	ensembl	74_37	-1	known	missense	c.721	p.A241T	0.999	NULL	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	STOML2	HGNC	ENSG00000165283	tier1	-	-	46	0	0.00	58	6	9.38
LRIG2	0	genome.wustl.edu	37	1	113667283	113667283	+	RNA	DEL	T	T	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	1	113667283	113667283	T	-	DEL	LRIG2	ENST00000466161	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	LRIG2	HGNC	ENSG00000198799	tier1			12	0	0.00	20	5	20.00
TRPC3	0	genome.wustl.edu	37	4	122824166	122824166	+	Silent	SNP	G	G	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	4	122824166	122824166	G	T	SNP	TRPC3	ENST00000379645	human	ensembl	74_37	-1	known	silent	c.2304	p.S768	0.819	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741	tier1	-	-	54	0	0.00	41	4	8.89
GPR143	0	genome.wustl.edu	37	X	9728813	9728813	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	X	9728813	9728813	C	T	SNP	GPR143	ENST00000380929	human	ensembl	74_37	-1	known	missense	c.364	p.V122I	0.612	pfam_Ocular_alb1,pfam_GPCR_2_secretin-like	pfam_Ocular_alb1,pfam_GPCR_2_secretin-like,prints_Ocular_alb1	-	no_errors	GPR143	HGNC	ENSG00000101850	tier1	-	-	50	0	0.00	56	7	11.11
VMA21	0	genome.wustl.edu	37	X	150565816	150565816	+	Frame_Shift_Del	DEL	G	G	-			TCGA-K1-A6RT-01A-32D-A33E-09	TCGA-K1-A6RT-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d8c3144-ea5e-4383-9875-36d81b7fec6f	1fa603b9-e9b3-4f9d-b3fc-688e7b46617d	X	150565816	150565816	G	-	DEL	VMA21	ENST00000330374	human	ensembl	74_37	+1	known	frame_shift_del	c.36	p.Q13fs	0.999	NULL	pfam_VMA21-like_domain	-	no_errors	VMA21	HGNC	ENSG00000160131	tier1			11	0	0.00	17	2	10.53
