Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ENSG00000265788	0	genome.wustl.edu	37	17	25988693	25988702	+	RNA	DEL	CACAGGTGGC	CACAGGTGGC	-			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	CACAGGTGGC	CACAGGTGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	17	25988693	25988702	CACAGGTGGC	-	DEL	ENSG00000265788	ENST00000583179	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.006:0.055:0.065:0.094:0.091:0.069:0.077:0.073:0.052	-	-	-	no_errors	RP11-19P22.5	Clone_based_vega_gene	ENSG00000265788	tier1			NA	NA	NA	NA	NA	NA
TUBB8	0	genome.wustl.edu	37	10	93505	93505	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	10	93505	93505	C	T	SNP	TUBB8	ENST00000309812	human	ensembl	74_37	-1	known	missense	c.827	p.R276Q	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876	tier1	rs147114528	-	81	0	0.00	32	6	15.00
DCHS2	0	genome.wustl.edu	37	4	155298547	155298547	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	4	155298547	155298547	G	A	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.284	p.S95F	0.861	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	tier1	-	-	43	0	0.00	22	21	48.84
USH2A	0	genome.wustl.edu	37	1	216246484	216246484	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	1	216246484	216246484	C	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.5731	p.G1911R	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	tier1	-	-	24	0	0.00	9	8	47.06
LIPF	0	genome.wustl.edu	37	10	90438361	90438361	+	Missense_Mutation	SNP	G	G	C			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	10	90438361	90438361	G	C	SNP	LIPF	ENST00000394375	human	ensembl	74_37	+1	known	missense	c.1150	p.D384H	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPF	HGNC	ENSG00000182333	tier1	rs150812830	-	68	0	0.00	48	41	45.56
LOC100996351	0	genome.wustl.edu	37	19	3148865	3148866	+	RNA	INS	-	-	CAGGG			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	19	3148865	3148866	-	CAGGG	INS	LOC100996351	ENST00000587587	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	AC005264.2	Clone_based_vega_gene	ENSG00000267551	tier1			NA	NA	NA	NA	NA	NA
SETD2	0	genome.wustl.edu	37	3	47164759	47164759	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	3	47164759	47164759	C	T	SNP	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	missense	c.1367	p.R456Q	0.990	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555	tier1	-	-	88	0	0.00	56	26	31.33
MLLT3	0	genome.wustl.edu	37	9	20622417	20622417	+	RNA	SNP	G	G	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	9	20622417	20622417	G	A	SNP	MLLT3	ENST00000475957	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843	tier1	-	-	58	0	0.00	31	27	46.55
NPIPA1	0	genome.wustl.edu	37	16	15045631	15045631	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	16	15045631	15045631	G	A	SNP	NPIPA1	ENST00000328085	human	ensembl	74_37	+1	novel	missense	c.802	p.E268K	0.032	NULL	NULL	-	no_errors	NPIPA1	HGNC	ENSG00000183426	tier1	rs201805072	-	43	0	0.00	38	5	11.63
FAM230B	0	genome.wustl.edu	37	22	21537762	21537762	+	RNA	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	22	21537762	21537762	C	T	SNP	FAM230B	ENST00000451257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	FAM230B	HGNC	ENSG00000215498	tier1	-	-	58	0	0.00	46	55	53.92
TUBGCP3	0	genome.wustl.edu	37	13	113170867	113170867	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	13	113170867	113170867	C	T	SNP	TUBGCP3	ENST00000261965	human	ensembl	74_37	-1	known	missense	c.1973	p.S658N	1.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP3	HGNC	ENSG00000126216	tier1	-	-	42	0	0.00	20	19	48.72
MTUS2	0	genome.wustl.edu	37	13	29675048	29675048	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	13	29675048	29675048	C	T	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.2615	p.S872L	0.999	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	tier1	-	-	75	0	0.00	40	27	40.30
GPR179	0	genome.wustl.edu	37	17	36482852	36482852	+	Silent	SNP	C	C	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	17	36482852	36482852	C	A	SNP	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	silent	c.6600	p.L2200	0.004	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	tier1	-	-	45	0	0.00	36	4	10.00
HMP19	0	genome.wustl.edu	37	5	173534646	173534646	+	RNA	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	5	173534646	173534646	C	T	SNP	HMP19	ENST00000521146	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	NSG2	Uniprot_gn	ENSG00000170091	tier1	-	-	15	0	0.00	6	6	50.00
FAM138D	0	genome.wustl.edu	37	12	148078	148078	+	RNA	SNP	G	G	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	12	148078	148078	G	A	SNP	FAM138D	ENST00000320165	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM138D	HGNC	ENSG00000206114	tier1	rs8181620	-	11	0	0.00	4	5	55.56
ALAS2	0	genome.wustl.edu	37	X	55051216	55051216	+	Missense_Mutation	SNP	C	C	G			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	X	55051216	55051216	C	G	SNP	ALAS2	ENST00000330807	human	ensembl	74_37	-1	known	missense	c.239	p.G80A	1.000	pfam_5aminolev_synth_preseq	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	tier1	-	-	79	0	0.00	79	28	26.17
GPRIN1	0	genome.wustl.edu	37	5	176026136	176026146	+	Frame_Shift_Del	DEL	CCTCCTTCCTC	CCTCCTTCCTC	-			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	CCTCCTTCCTC	CCTCCTTCCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	5	176026136	176026146	CCTCCTTCCTC	-	DEL	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	frame_shift_del	c.700_690	p.R231fs	0.001:0.001:0.018:0.050:0.065:0.536:0.053:0.031:0.027:0.000:0.000	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258	tier1			NA	NA	NA	NA	NA	NA
SDHAF2	0	genome.wustl.edu	37	11	61249257	61249257	+	Missense_Mutation	SNP	C	C	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	11	61249257	61249257	C	A	SNP	SDHAF2	ENST00000538594	human	ensembl	74_37	+1	known	missense	c.374	p.P125H	0.085	NULL	pfam_SDH,superfamily_SDH	-	no_errors	RP11-286N22.8	Clone_based_vega_gene	ENSG00000256591	tier1	-	-	26	0	0.00	17	15	46.88
NALCN	0	genome.wustl.edu	37	13	101717809	101717809	+	Silent	SNP	G	G	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	13	101717809	101717809	G	A	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	silent	c.4551	p.Y1517	0.943	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	tier1	-	-	51	0	0.00	20	19	48.72
MTUS2	0	genome.wustl.edu	37	13	29674957	29674957	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	13	29674957	29674957	C	T	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.2524	p.P842S	0.182	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	tier1	-	-	61	0	0.00	35	27	43.55
KIAA0753	0	genome.wustl.edu	37	17	6531919	6531920	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	17	6531919	6531920	-	CT	INS	KIAA0753	ENST00000361413	human	ensembl	74_37	-1	known	frame_shift_ins	c.236_235	p.V79fs	0.000:0.001	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920	tier1			51	0	0.00	17	2	10.53
MTUS2	0	genome.wustl.edu	37	13	29675028	29675028	+	Silent	SNP	C	C	G			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	13	29675028	29675028	C	G	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	silent	c.2595	p.V865	1.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	tier1	-	-	76	0	0.00	43	30	41.10
FKBP4	0	genome.wustl.edu	37	12	2907947	2907947	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	12	2907947	2907947	C	T	SNP	FKBP4	ENST00000001008	human	ensembl	74_37	+1	known	missense	c.469	p.R157C	0.975	NULL	pfam_PPIase_FKBP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP4	HGNC	ENSG00000004478	tier1	-	-	62	0	0.00	31	29	48.33
GNN	0	genome.wustl.edu	37	12	104308806	104308806	+	RNA	SNP	A	A	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	12	104308806	104308806	A	T	SNP	GNN	ENST00000388789	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	RP11-642P15.1	Clone_based_vega_gene	ENSG00000214198	tier1	-	-	16	0	0.00	5	5	50.00
RAB6A	0	genome.wustl.edu	37	11	73429869	73429869	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	11	73429869	73429869	G	A	SNP	RAB6A	ENST00000310653	human	ensembl	74_37	-1	known	missense	c.250	p.R84C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6A	HGNC	ENSG00000175582	tier1	-	-	71	0	0.00	31	32	50.79
DCAF16	0	genome.wustl.edu	37	4	17805189	17805189	+	Silent	SNP	A	A	G			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	4	17805189	17805189	A	G	SNP	DCAF16	ENST00000382247	human	ensembl	74_37	-1	known	silent	c.576	p.T192	0.702	NULL	NULL	-	no_errors	DCAF16	HGNC	ENSG00000163257	tier1	-	-	148	0	0.00	99	22	18.03
DIP2B	0	genome.wustl.edu	37	12	51125291	51125291	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	12	51125291	51125291	G	T	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	missense	c.3781	p.G1261C	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	tier1	-	-	22	0	0.00	12	16	57.14
TUBBP5	0	genome.wustl.edu	37	9	141070741	141070741	+	RNA	SNP	C	C	G			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	9	141070741	141070741	C	G	SNP	TUBBP5	ENST00000290377	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247	tier1	rs199744699	-	23	0	0.00	21	6	22.22
PPFIBP2	0	genome.wustl.edu	37	11	7669673	7669673	+	Nonsense_Mutation	SNP	G	G	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	11	7669673	7669673	G	T	SNP	PPFIBP2	ENST00000299492	human	ensembl	74_37	+1	known	nonsense	c.1702	p.E568*	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387	tier1	-	-	54	0	0.00	32	16	33.33
TSC2	0	genome.wustl.edu	37	16	2107142	2107143	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	16	2107142	2107143	AG	-	DEL	TSC2	ENST00000219476	human	ensembl	74_37	+1	known	frame_shift_del	c.811_812	p.S271fs	1.000:1.000	pfam_Tuberin_N,superfamily_ARM-type_fold	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom,prints_Tuberin	-	no_errors	TSC2	HGNC	ENSG00000103197	tier1			72	0	0.00	55	30	35.29
C1orf210	0	genome.wustl.edu	37	1	43748630	43748630	+	Silent	SNP	G	G	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	1	43748630	43748630	G	T	SNP	C1orf210	ENST00000423420	human	ensembl	74_37	-1	known	silent	c.168	p.L56	1.000	NULL	NULL	-	no_errors	C1orf210	HGNC	ENSG00000253313	tier1	-	-	35	0	0.00	26	29	52.73
SUCNR1	0	genome.wustl.edu	37	3	151598364	151598364	+	Missense_Mutation	SNP	C	C	G			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	3	151598364	151598364	C	G	SNP	SUCNR1	ENST00000362032	human	ensembl	74_37	+1	known	missense	c.33	p.C11W	0.015	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	SUCNR1	HGNC	ENSG00000198829	tier1	-	-	71	0	0.00	76	7	8.43
ATP6AP1	0	genome.wustl.edu	37	X	153660771	153660771	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	X	153660771	153660771	G	T	SNP	ATP6AP1	ENST00000369762	human	ensembl	74_37	+1	known	missense	c.523	p.A175S	0.742	pfam_BIG/ATPase_V1_suS1	pfam_BIG/ATPase_V1_suS1	-	no_errors	ATP6AP1	HGNC	ENSG00000071553	tier1	-	-	43	0	0.00	34	26	43.33
XPNPEP2	0	genome.wustl.edu	37	X	128894541	128894541	+	Missense_Mutation	SNP	T	T	G			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	X	128894541	128894541	T	G	SNP	XPNPEP2	ENST00000371106	human	ensembl	74_37	+1	known	missense	c.1482	p.F494L	0.998	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP2	HGNC	ENSG00000122121	tier1	-	-	42	0	0.00	22	20	47.62
ARRDC1	0	genome.wustl.edu	37	9	140508122	140508122	+	Silent	SNP	G	G	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	9	140508122	140508122	G	A	SNP	ARRDC1	ENST00000371421	human	ensembl	74_37	+1	known	silent	c.336	p.R112	0.999	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC1	HGNC	ENSG00000197070	tier1	-	-	65	0	0.00	39	40	50.63
TMTC3	0	genome.wustl.edu	37	12	88566467	88566467	+	Missense_Mutation	SNP	A	A	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	12	88566467	88566467	A	T	SNP	TMTC3	ENST00000266712	human	ensembl	74_37	+1	known	missense	c.1144	p.S382C	1.000	NULL	pfam_TPR_2,pfam_TPR_1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324	tier1	-	-	34	0	0.00	20	18	47.37
TP53	0	genome.wustl.edu	37	17	7578395	7578395	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	17	7578395	7578395	G	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.535	p.H179N	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	35	0	0.00	3	18	85.71
DNAJB2	0	genome.wustl.edu	37	2	220147939	220147939	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	2	220147939	220147939	G	T	SNP	DNAJB2	ENST00000336576	human	ensembl	74_37	+1	known	missense	c.530	p.R177L	0.121	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB2	HGNC	ENSG00000135924	tier1	-	-	71	0	0.00	19	33	63.46
TRPM5	0	genome.wustl.edu	37	11	2443469	2443469	+	Missense_Mutation	SNP	A	A	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	11	2443469	2443469	A	T	SNP	TRPM5	ENST00000452833	human	ensembl	74_37	-1	known	missense	c.200	p.L67Q	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	tier1	-	-	37	0	0.00	20	22	52.38
ZBTB16	0	genome.wustl.edu	37	11	113934249	113934249	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	11	113934249	113934249	C	T	SNP	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	missense	c.227	p.S76L	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906	tier1	-	-	40	0	0.00	36	15	29.41
TEKT4	0	genome.wustl.edu	37	2	95539831	95539831	+	Missense_Mutation	SNP	T	T	C			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	2	95539831	95539831	T	C	SNP	TEKT4	ENST00000295201	human	ensembl	74_37	+1	known	missense	c.691	p.Y231H	0.907	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT4	HGNC	ENSG00000163060	tier1	rs199573327	-	31	0	0.00	35	8	18.60
TUBBP5	0	genome.wustl.edu	37	9	141070735	141070735	+	RNA	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	9	141070735	141070735	C	T	SNP	TUBBP5	ENST00000290377	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247	tier1	rs201654758	-	23	0	0.00	20	6	23.08
CHRD	0	genome.wustl.edu	37	3	184099338	184099339	+	Frame_Shift_Ins	INS	-	-	C			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	3	184099338	184099339	-	C	INS	CHRD	ENST00000204604	human	ensembl	74_37	+1	known	frame_shift_ins	c.437_438	p.E148fs	1.000:0.988	pirsf_Chordin	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539	tier1			21	0	0.00	19	11	36.67
RLIM	0	genome.wustl.edu	37	X	73812716	73812716	+	Missense_Mutation	SNP	C	C	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	X	73812716	73812716	C	A	SNP	RLIM	ENST00000332687	human	ensembl	74_37	-1	known	missense	c.434	p.R145L	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RLIM	HGNC	ENSG00000131263	tier1	-	-	76	0	0.00	39	53	57.61
BCAP31	0	genome.wustl.edu	37	X	152981004	152981004	+	Silent	SNP	G	G	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	X	152981004	152981004	G	A	SNP	BCAP31	ENST00000458587	human	ensembl	74_37	-1	known	silent	c.535	p.L179	1.000	pfam_Bap31	pfam_Bap31	-	no_errors	BCAP31	HGNC	ENSG00000185825	tier1	-	-	100	0	0.00	59	26	30.23
LOC440157	0	genome.wustl.edu	37	14	19686793	19686793	+	RNA	SNP	T	T	C			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	14	19686793	19686793	T	C	SNP	LOC440157	ENST00000418499	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	AL589743.1	Clone_based_vega_gene	ENSG00000225210	tier1	-	-	12	0	0.00	4	4	50.00
ENSG00000221474	0	genome.wustl.edu	37	3	122000728	122000729	+	RNA	DEL	TG	TG	-			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	3	122000728	122000729	TG	-	DEL	ENSG00000221474	ENST00000408547	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	AC068754.1	Clone_based_ensembl_gene	ENSG00000221474	tier1			29	0	0.00	20	6	23.08
IGSF9	0	genome.wustl.edu	37	1	159896888	159896895	+	RNA	DEL	AGAGAGAG	AGAGAGAG	-			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	AGAGAGAG	AGAGAGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	1	159896888	159896895	AGAGAGAG	-	DEL	IGSF9	ENST00000476102	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.745:0.529:0.496:0.454:0.373:0.271:0.214:0.033	-	-	-	no_errors	IGSF9	HGNC	ENSG00000085552	tier1			NA	NA	NA	NA	NA	NA
ENSG00000215933	0	genome.wustl.edu	37	X	71372202	71372209	+	RNA	DEL	CGCGCGCA	CGCGCGCA	-			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	CGCGCGCA	CGCGCGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	X	71372202	71372209	CGCGCGCA	-	DEL	ENSG00000215933	ENST00000401114	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.001:0.015:0.009	-	-	-	no_errors	BX119917.1	Clone_based_ensembl_gene	ENSG00000215933	tier1			NA	NA	NA	NA	NA	NA
TPRXL	0	genome.wustl.edu	37	3	14106367	14106367	+	Missense_Mutation	SNP	T	T	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	3	14106367	14106367	T	A	SNP	TPRXL	ENST00000326972	human	ensembl	74_37	+1	known	missense	c.691	p.C231S	0.007	NULL	NULL	-	no_errors	TPRXL	HGNC	ENSG00000180438	tier1	-	-	30	0	0.00	53	9	14.52
SRSF4	0	genome.wustl.edu	37	1	29475424	29475424	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	1	29475424	29475424	C	T	SNP	SRSF4	ENST00000373795	human	ensembl	74_37	-1	known	missense	c.983	p.R328H	0.011	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF4	HGNC	ENSG00000116350	tier1	-	-	50	0	0.00	25	24	48.98
PPFIBP2	0	genome.wustl.edu	37	11	7669672	7669672	+	Silent	SNP	G	G	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	11	7669672	7669672	G	T	SNP	PPFIBP2	ENST00000299492	human	ensembl	74_37	+1	known	silent	c.1701	p.L567	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387	tier1	-	-	54	0	0.00	32	15	31.91
JARID2	0	genome.wustl.edu	37	6	15496913	15496913	+	Missense_Mutation	SNP	A	A	G			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	6	15496913	15496913	A	G	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	missense	c.1457	p.K486R	0.620	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083	tier1	-	-	37	0	0.00	2	27	93.10
URB2	0	genome.wustl.edu	37	1	229773350	229773352	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	1	229773350	229773352	TCC	-	DEL	URB2	ENST00000258243	human	ensembl	74_37	+1	known	in_frame_del	c.2990_2992	p.L998in_frame_del	0.539:0.527:0.923	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	tier1			65	0	0.00	37	33	47.14
SERHL	0	genome.wustl.edu	37	22	42905075	42905075	+	RNA	SNP	G	G	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	22	42905075	42905075	G	A	SNP	SERHL	ENST00000359906	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.051	-	-	-	no_errors	SERHL	HGNC	ENSG00000172250	tier1	rs139392843	-	81	0	0.00	46	4	8.00
LRP1B	0	genome.wustl.edu	37	2	141202013	141202013	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	2	141202013	141202013	G	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.10180	p.H3394N	1.000	superfamily_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	-	-	70	0	0.00	3	30	90.91
ENSG00000222001	0	genome.wustl.edu	37	2	233877660	233877660	+	Silent	SNP	C	C	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	2	233877660	233877660	C	T	SNP	ENSG00000222001	ENST00000409905	human	ensembl	74_37	+1	putative	silent	c.99	p.L33	0.000	NULL	NULL	-	no_errors	AC106876.2	Clone_based_vega_gene	ENSG00000222001	tier1	-	-	63	0	0.00	54	35	39.33
LILRB4	0	genome.wustl.edu	37	19	55179128	55179128	+	Nonsense_Mutation	SNP	A	A	T			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	19	55179128	55179128	A	T	SNP	LILRB4	ENST00000270452	human	ensembl	74_37	+1	known	nonsense	c.1084	p.K362*	0.000	NULL	pfam_Immunoglobulin,pfscan_Ig-like_dom	-	no_errors	LILRB4	HGNC	ENSG00000186818	tier1	-	-	127	0	0.00	50	38	41.76
DOK7	0	genome.wustl.edu	37	4	3475303	3475303	+	Missense_Mutation	SNP	T	T	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	4	3475303	3475303	T	A	SNP	DOK7	ENST00000389653	human	ensembl	74_37	+1	known	missense	c.271	p.F91I	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	DOK7	HGNC	ENSG00000175920	tier1	-	-	69	0	0.00	41	38	48.10
FAM122B	0	genome.wustl.edu	37	X	133930160	133930160	+	Missense_Mutation	SNP	C	C	A			TCGA-KD-A5QT-01A-11D-A27P-09	TCGA-KD-A5QT-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b10488d2-fee5-4732-9162-299bcbdc6b5c	41bf2742-b039-42a5-a300-014f3714424a	X	133930160	133930160	C	A	SNP	FAM122B	ENST00000343004	human	ensembl	74_37	-1	known	missense	c.76	p.A26S	1.000	NULL	NULL	-	no_errors	FAM122B	HGNC	ENSG00000156504	tier1	-	-	35	0	0.00	22	21	48.84
