Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ZMIZ1	0	genome.wustl.edu	37	10	81050826	81050826	+	Frame_Shift_Del	DEL	G	G	-			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	10	81050826	81050826	G	-	DEL	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	frame_shift_del	c.651	p.Q219fs	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175	tier1			35	0	0.00	20	2	9.09
EVPL	0	genome.wustl.edu	37	17	74003381	74003381	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	17	74003381	74003381	C	T	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	missense	c.5905	p.A1969T	1.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	tier1	-	-	77	0	0.00	73	15	17.05
EFCAB5	0	genome.wustl.edu	37	17	28380437	28380437	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	17	28380437	28380437	G	T	SNP	EFCAB5	ENST00000394835	human	ensembl	74_37	+1	known	missense	c.1465	p.D489Y	0.155	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB5	HGNC	ENSG00000176927	tier1	-	-	33	0	0.00	30	4	11.76
BRD8	0	genome.wustl.edu	37	5	137476530	137476530	+	Missense_Mutation	SNP	C	C	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	5	137476530	137476530	C	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.3479	p.G1160V	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983	tier1	-	-	21	0	0.00	5	5	50.00
RBM14	0	genome.wustl.edu	37	11	66393948	66393948	+	Missense_Mutation	SNP	C	C	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	11	66393948	66393948	C	A	SNP	RBM14	ENST00000310137	human	ensembl	74_37	+1	known	missense	c.1819	p.R607S	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306	tier1	-	-	40	0	0.00	30	8	21.05
SLC9A4	0	genome.wustl.edu	37	2	103148832	103148832	+	Silent	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	2	103148832	103148832	C	T	SNP	SLC9A4	ENST00000295269	human	ensembl	74_37	+1	known	silent	c.2082	p.S694	0.001	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251	tier1	-	-	79	0	0.00	56	13	18.84
SPEG	0	genome.wustl.edu	37	2	220330643	220330650	+	RNA	DEL	GTGCGCGC	GTGCGCGC	-			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	GTGCGCGC	GTGCGCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	2	220330643	220330650	GTGCGCGC	-	DEL	SPEG	ENST00000462545	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.057:0.016:0.015:0.006:0.004:0.001:0.002:0.003	-	-	-	no_errors	SPEG	HGNC	ENSG00000072195	tier1			NA	NA	NA	NA	NA	NA
CACNA2D3	0	genome.wustl.edu	37	3	55108235	55108254	+	RNA	DEL	ACTGACTGAGATGTTCTCTT	ACTGACTGAGATGTTCTCTT	-			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	ACTGACTGAGATGTTCTCTT	ACTGACTGAGATGTTCTCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	3	55108235	55108254	ACTGACTGAGATGTTCTCTT	-	DEL	CACNA2D3	ENST00000478261	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994:0.994:0.994:0.994:0.994:0.994:0.994:0.994:0.994:0.994:0.994:0.994:0.995:0.995:0.995:0.996:0.996:0.997:0.997:0.998	-	-	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	tier1			NA	NA	NA	NA	NA	NA
NUP133	0	genome.wustl.edu	37	1	229586308	229586308	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	1	229586308	229586308	G	T	SNP	NUP133	ENST00000261396	human	ensembl	74_37	-1	known	missense	c.3144	p.F1048L	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248	tier1	-	-	27	0	0.00	21	3	12.00
TMEM125	0	genome.wustl.edu	37	1	43738733	43738733	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	1	43738733	43738733	G	A	SNP	TMEM125	ENST00000432792	human	ensembl	74_37	+1	known	missense	c.340	p.A114T	0.133	NULL	NULL	-	no_errors	TMEM125	HGNC	ENSG00000179178	tier1	-	-	86	0	0.00	71	13	15.48
ATRX	0	genome.wustl.edu	37	X	76912104	76912104	+	Nonsense_Mutation	SNP	G	G	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	X	76912104	76912104	G	C	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	nonsense	c.4160	p.S1387*	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	135	0	0.00	80	78	49.37
CROCC	0	genome.wustl.edu	37	1	17265593	17265593	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	1	17265593	17265593	G	A	SNP	CROCC	ENST00000375541	human	ensembl	74_37	+1	known	missense	c.1564	p.A522T	0.953	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	tier1	-	-	85	0	0.00	34	13	27.66
ENSG00000268366	0	genome.wustl.edu	37	19	40949861	40949861	+	RNA	SNP	T	T	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	19	40949861	40949861	T	A	SNP	ENSG00000268366	ENST00000599050	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.430	-	-	-	no_errors	CTC-492K19.4	Clone_based_vega_gene	ENSG00000268366	tier1	-	-	35	0	0.00	6	8	57.14
SEZ6L	0	genome.wustl.edu	37	22	26701984	26701984	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	22	26701984	26701984	G	A	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	missense	c.1388	p.R463H	0.995	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095	tier1	-	-	30	0	0.00	28	14	32.56
DNAH5	0	genome.wustl.edu	37	5	13766211	13766211	+	Silent	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	5	13766211	13766211	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	silent	c.9975	p.C3325	0.693	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	tier1	-	-	42	0	0.00	29	11	27.50
CNIH2	0	genome.wustl.edu	37	11	66045946	66045946	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	11	66045946	66045946	G	T	SNP	CNIH2	ENST00000311445	human	ensembl	74_37	+1	known	missense	c.19	p.A7S	1.000	pfam_Cornichon	pfam_Cornichon	-	no_errors	CNIH2	HGNC	ENSG00000174871	tier1	-	-	25	0	0.00	10	4	28.57
CARD10	0	genome.wustl.edu	37	22	37906309	37906314	+	In_Frame_Del	DEL	CTCCTT	CTCCTT	-			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	CTCCTT	CTCCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	22	37906309	37906314	CTCCTT	-	DEL	CARD10	ENST00000251973	human	ensembl	74_37	-1	known	in_frame_del	c.819_814	p.KE272in_frame_del	0.939:0.949:0.957:0.963:0.966:0.967	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065	tier1			NA	NA	NA	NA	NA	NA
UROC1	0	genome.wustl.edu	37	3	126219578	126219578	+	Missense_Mutation	SNP	C	C	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	3	126219578	126219578	C	A	SNP	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	missense	c.1105	p.A369S	1.000	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650	tier1	-	-	66	0	0.00	37	18	32.73
FAM196B	0	genome.wustl.edu	37	5	169310676	169310676	+	Missense_Mutation	SNP	G	G	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	5	169310676	169310676	G	C	SNP	FAM196B	ENST00000377365	human	ensembl	74_37	-1	known	missense	c.227	p.P76R	0.259	NULL	NULL	-	no_errors	FAM196B	HGNC	ENSG00000204767	tier1	-	-	53	0	0.00	17	12	41.38
IFI44L	0	genome.wustl.edu	37	1	79102851	79102851	+	Frame_Shift_Del	DEL	A	A	-			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	1	79102851	79102851	A	-	DEL	IFI44L	ENST00000370751	human	ensembl	74_37	+1	known	frame_shift_del	c.1011	p.V339fs	0.003	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	IFI44L	HGNC	ENSG00000137959	tier1			51	0	0.00	42	31	42.47
CD3EAP	0	genome.wustl.edu	37	19	45910444	45910444	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	19	45910444	45910444	G	A	SNP	CD3EAP	ENST00000589804	human	ensembl	74_37	+1	known	missense	c.121	p.D41N	0.022	pfam_DNA-dir_RNA_pol1_su_RPA34	pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	CD3EAP	HGNC	ENSG00000117877	tier1	-	-	55	0	0.00	38	6	13.64
ALDH1L1	0	genome.wustl.edu	37	3	125836884	125836884	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	3	125836884	125836884	G	T	SNP	ALDH1L1	ENST00000393434	human	ensembl	74_37	-1	known	missense	c.1946	p.T649K	0.999	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	tier1	-	-	85	0	0.00	73	19	20.65
RAD9A	0	genome.wustl.edu	37	11	67164964	67164964	+	Silent	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	11	67164964	67164964	G	T	SNP	RAD9A	ENST00000307980	human	ensembl	74_37	+1	known	silent	c.1110	p.L370	0.998	pirsf_Rad9	pfam_Rad9/Ddc1,pirsf_Rad9	-	no_errors	RAD9A	HGNC	ENSG00000172613	tier1	-	-	54	0	0.00	16	3	15.79
PPP1R10	0	genome.wustl.edu	37	6	30571953	30571953	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	6	30571953	30571953	G	A	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	missense	c.1340	p.A447V	1.000	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569	tier1	-	-	46	0	0.00	44	5	10.20
REV1	0	genome.wustl.edu	37	2	100055179	100055179	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	2	100055179	100055179	C	T	SNP	REV1	ENST00000258428	human	ensembl	74_37	-1	known	missense	c.1097	p.C366Y	1.000	pirsf_REV1	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	REV1	HGNC	ENSG00000135945	tier1	-	-	33	0	0.00	27	4	12.50
NOL8	0	genome.wustl.edu	37	9	95078413	95078413	+	Missense_Mutation	SNP	T	T	G			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	9	95078413	95078413	T	G	SNP	NOL8	ENST00000442668	human	ensembl	74_37	-1	known	missense	c.494	p.K165T	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000	tier1	-	-	47	0	0.00	16	37	69.81
PIWIL3	0	genome.wustl.edu	37	22	25124262	25124262	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	22	25124262	25124262	G	T	SNP	PIWIL3	ENST00000332271	human	ensembl	74_37	-1	known	missense	c.1814	p.P605Q	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	tier1	-	-	70	0	0.00	92	21	18.58
TNPO3	0	genome.wustl.edu	37	7	128619071	128619071	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	7	128619071	128619071	C	T	SNP	TNPO3	ENST00000393245	human	ensembl	74_37	-1	known	missense	c.2129	p.G710E	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	tier1	-	-	28	0	0.00	14	11	44.00
IQCE	0	genome.wustl.edu	37	7	2646853	2646853	+	Missense_Mutation	SNP	C	C	G			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	7	2646853	2646853	C	G	SNP	IQCE	ENST00000402050	human	ensembl	74_37	+1	known	missense	c.1961	p.A654G	0.004	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCE	HGNC	ENSG00000106012	tier1	-	-	42	0	0.00	47	17	26.15
SEC16A	0	genome.wustl.edu	37	9	139347902	139347902	+	Missense_Mutation	SNP	A	A	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	9	139347902	139347902	A	C	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	missense	c.6137	p.F2046C	0.002	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	tier1	-	-	48	0	0.00	37	6	13.95
EPHA7	0	genome.wustl.edu	37	6	93964495	93964495	+	Missense_Mutation	SNP	C	C	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	6	93964495	93964495	C	A	SNP	EPHA7	ENST00000369303	human	ensembl	74_37	-1	known	missense	c.2402	p.R801M	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333	tier1	-	-	32	0	0.00	27	20	42.55
LOC101929106	0	genome.wustl.edu	37	3	186917880	186917880	+	RNA	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	3	186917880	186917880	G	T	SNP	LOC101929106	ENST00000356133	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.064	-	-	-	no_errors	RP11-208N14.4	Clone_based_vega_gene	ENSG00000198491	tier1	-	-	47	0	0.00	44	4	8.33
PSG1	0	genome.wustl.edu	37	19	43375964	43375964	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	19	43375964	43375964	G	T	SNP	PSG1	ENST00000312439	human	ensembl	74_37	-1	known	missense	c.664	p.P222T	0.006	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG1	HGNC	ENSG00000231924	tier1	-	-	175	0	0.00	111	34	23.45
DNAI2	0	genome.wustl.edu	37	17	72285741	72285741	+	Missense_Mutation	SNP	A	A	G			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	17	72285741	72285741	A	G	SNP	DNAI2	ENST00000311014	human	ensembl	74_37	+1	known	missense	c.476	p.Q159R	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI2	HGNC	ENSG00000171595	tier1	-	-	27	0	0.00	15	9	37.50
FAM157A	0	genome.wustl.edu	37	3	197880131	197880139	+	RNA	DEL	GCAGCAGCA	GCAGCAGCA	-			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	GCAGCAGCA	GCAGCAGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	3	197880131	197880139	GCAGCAGCA	-	DEL	FAM157A	ENST00000431569	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.115:0.118:0.119:0.120:0.121:0.121:0.120:0.119:0.118	-	-	-	no_errors	FAM157A	HGNC	ENSG00000236438	tier1			NA	NA	NA	NA	NA	NA
MFI2	0	genome.wustl.edu	37	3	196751255	196751255	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	3	196751255	196751255	G	A	SNP	MFI2	ENST00000296350	human	ensembl	74_37	-1	known	missense	c.406	p.R136C	1.000	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	MFI2	HGNC	ENSG00000163975	tier1	-	-	55	0	0.00	39	12	23.08
EFCAB3	0	genome.wustl.edu	37	17	60472473	60472473	+	Missense_Mutation	SNP	A	A	G			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	17	60472473	60472473	A	G	SNP	EFCAB3	ENST00000450662	human	ensembl	74_37	+1	known	missense	c.568	p.I190V	0.997	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB3	HGNC	ENSG00000172421	tier1	-	-	60	0	0.00	19	37	66.07
ZNF681	0	genome.wustl.edu	37	19	23927876	23927876	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	19	23927876	23927876	C	T	SNP	ZNF681	ENST00000402377	human	ensembl	74_37	-1	known	missense	c.476	p.G159E	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF681	HGNC	ENSG00000196172	tier1	-	-	19	0	0.00	18	14	43.75
CACNB4	0	genome.wustl.edu	37	2	152727108	152727108	+	Silent	SNP	A	A	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	2	152727108	152727108	A	C	SNP	CACNB4	ENST00000539935	human	ensembl	74_37	-1	known	silent	c.636	p.P212	0.985	superfamily_SH3_domain,prints_VDCC_L_bsu	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu	-	no_errors	CACNB4	HGNC	ENSG00000182389	tier1	-	-	20	0	0.00	11	10	47.62
TPTEP1	0	genome.wustl.edu	37	22	17131536	17131537	+	RNA	INS	-	-	CTG			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	22	17131536	17131537	-	CTG	INS	TPTEP1	ENST00000426585	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999:0.999	-	-	-	no_errors	TPTEP1	HGNC	ENSG00000100181	tier1			11	0	0.00	11	3	21.43
GTPBP8	0	genome.wustl.edu	37	3	112714066	112714066	+	Missense_Mutation	SNP	G	G	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	3	112714066	112714066	G	C	SNP	GTPBP8	ENST00000383678	human	ensembl	74_37	+1	known	missense	c.520	p.E174Q	0.978	pfam_GTP_binding_domain,pfam_EF_GTP-bd_dom,pfam_Fe2_transport_prot_B_N,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,tigrfam_GTP-bd_ribosome_bio_YsxC	pfam_GTP_binding_domain,pfam_EF_GTP-bd_dom,pfam_Fe2_transport_prot_B_N,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,tigrfam_GTP-bd_ribosome_bio_YsxC	-	no_errors	GTPBP8	HGNC	ENSG00000163607	tier1	-	-	46	0	0.00	45	4	8.16
ALG6	0	genome.wustl.edu	37	1	63872024	63872024	+	Missense_Mutation	SNP	T	T	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	1	63872024	63872024	T	C	SNP	ALG6	ENST00000371108	human	ensembl	74_37	+1	known	missense	c.383	p.V128A	1.000	pfam_Glyco_trans_ALG6/ALG8	pfam_Glyco_trans_ALG6/ALG8	-	no_errors	ALG6	HGNC	ENSG00000088035	tier1	rs188679061	-	62	0	0.00	94	9	8.65
FAM26D	0	genome.wustl.edu	37	6	116875020	116875020	+	Silent	SNP	T	T	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	6	116875020	116875020	T	C	SNP	FAM26D	ENST00000368596	human	ensembl	74_37	+1	known	silent	c.64	p.L22	0.988	NULL	NULL	-	no_errors	FAM26D	HGNC	ENSG00000164451	tier1	-	-	37	0	0.00	35	36	50.70
KANK3	0	genome.wustl.edu	37	19	8398950	8398961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	TCGCTGTCGCCA	-			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	TCGCTGTCGCCA	TCGCTGTCGCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	19	8398950	8398961	TCGCTGTCGCCA	-	DEL	KANK3	ENST00000593649	human	ensembl	74_37	-1	known	in_frame_del	c.1478_1467	p.DGDS489in_frame_del	0.002:0.046:0.028:0.025:0.017:0.004:0.003:0.002:0.000:0.001:0.003:0.001	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	KANK3	HGNC	ENSG00000186994	tier1			NA	NA	NA	NA	NA	NA
SCAF11	0	genome.wustl.edu	37	12	46320707	46320708	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	12	46320707	46320708	TC	-	DEL	SCAF11	ENST00000369367	human	ensembl	74_37	-1	known	frame_shift_del	c.2777_2776	p.E926fs	1.000:1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SCAF11	HGNC	ENSG00000139218	tier1			22	0	0.00	20	4	16.67
TGFBR3	0	genome.wustl.edu	37	1	92187646	92187646	+	Missense_Mutation	SNP	T	T	G			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	1	92187646	92187646	T	G	SNP	TGFBR3	ENST00000212355	human	ensembl	74_37	-1	known	missense	c.941	p.K314T	0.998	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	TGFBR3	HGNC	ENSG00000069702	tier1	-	-	41	0	0.00	52	5	8.62
CDH18	0	genome.wustl.edu	37	5	19473140	19473140	+	RNA	DEL	T	T	-			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	5	19473140	19473140	T	-	DEL	CDH18	ENST00000510297	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDH18	HGNC	ENSG00000145526	tier1			12	0	0.00	10	2	16.67
C2orf16	0	genome.wustl.edu	37	2	27801965	27801965	+	Silent	SNP	A	A	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	2	27801965	27801965	A	C	SNP	C2orf16	ENST00000408964	human	ensembl	74_37	+1	known	silent	c.2526	p.L842	0.000	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	tier1	-	-	38	0	0.00	18	9	33.33
AR	0	genome.wustl.edu	37	X	66765152	66765152	+	Missense_Mutation	SNP	T	T	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	X	66765152	66765152	T	A	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	missense	c.164	p.L55Q	0.960	pfam_Andrgn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	tier1	-	-	24	0	0.00	33	10	23.26
UBE3B	0	genome.wustl.edu	37	12	109948259	109948259	+	Nonsense_Mutation	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	12	109948259	109948259	C	T	SNP	UBE3B	ENST00000342494	human	ensembl	74_37	+1	known	nonsense	c.1852	p.R618*	1.000	NULL	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148	tier1	-	-	33	0	0.00	25	9	26.47
AZI1	0	genome.wustl.edu	37	17	79163639	79163639	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	17	79163639	79163639	G	A	SNP	AZI1	ENST00000269392	human	ensembl	74_37	-1	known	missense	c.3182	p.A1061V	0.988	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577	tier1	-	-	73	0	0.00	18	39	68.42
C1QTNF9	0	genome.wustl.edu	37	13	24895530	24895530	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	13	24895530	24895530	C	T	SNP	C1QTNF9	ENST00000332018	human	ensembl	74_37	+1	known	missense	c.626	p.T209M	0.876	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9	HGNC	ENSG00000240654	tier1	-	-	23	0	0.00	11	5	31.25
PPAP2A	0	genome.wustl.edu	37	5	54721120	54721125	+	In_Frame_Del	DEL	TAAAAG	TAAAAG	-			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	TAAAAG	TAAAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	5	54721120	54721125	TAAAAG	-	DEL	PPAP2A	ENST00000264775	human	ensembl	74_37	-1	known	in_frame_del	c.772_767	p.SFKERK256in_frame_del*	1.000:0.996:0.992:0.978:0.060:0.072	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAP2A	HGNC	ENSG00000067113	tier1			NA	NA	NA	NA	NA	NA
TCHH	0	genome.wustl.edu	37	1	152084230	152084235	+	In_Frame_Del	DEL	CAACGT	CAACGT	-			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	CAACGT	CAACGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	1	152084230	152084235	CAACGT	-	DEL	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	in_frame_del	c.1463_1458	p.RW487in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450	tier1			NA	NA	NA	NA	NA	NA
URB2	0	genome.wustl.edu	37	1	229779403	229779403	+	Missense_Mutation	SNP	G	G	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	1	229779403	229779403	G	C	SNP	URB2	ENST00000258243	human	ensembl	74_37	+1	known	missense	c.3758	p.G1253A	0.974	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	tier1	-	-	84	0	0.00	88	15	14.56
NUTM2F	0	genome.wustl.edu	37	9	97088084	97088084	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	9	97088084	97088084	G	A	SNP	NUTM2F	ENST00000253262	human	ensembl	74_37	-1	known	missense	c.149	p.P50L	0.008	NULL	NULL	-	no_errors	NUTM2F	HGNC	ENSG00000130950	tier1	-	-	113	0	0.00	52	29	35.80
ADH7	0	genome.wustl.edu	37	4	100341929	100341929	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	4	100341929	100341929	C	T	SNP	ADH7	ENST00000209665	human	ensembl	74_37	-1	known	missense	c.622	p.V208I	0.920	superfamily_GroES-like	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like	-	no_errors	ADH7	HGNC	ENSG00000196344	tier1	-	-	25	0	0.00	33	8	19.51
GOLGA6C	0	genome.wustl.edu	37	15	75557687	75557687	+	Silent	SNP	A	A	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	15	75557687	75557687	A	T	SNP	GOLGA6C	ENST00000300576	human	ensembl	74_37	+1	known	silent	c.681	p.L227	0.271	NULL	NULL	-	no_errors	GOLGA6C	HGNC	ENSG00000167195	tier1	-	-	181	1	0.54	57	77	57.46
OR13G1	0	genome.wustl.edu	37	1	247835651	247835651	+	Silent	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	1	247835651	247835651	C	T	SNP	OR13G1	ENST00000359688	human	ensembl	74_37	-1	known	silent	c.693	p.K231	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR13G1	HGNC	ENSG00000197437	tier1	-	-	54	0	0.00	47	11	18.64
HELQ	0	genome.wustl.edu	37	4	84350703	84350703	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	4	84350703	84350703	G	A	SNP	HELQ	ENST00000295488	human	ensembl	74_37	-1	known	missense	c.2492	p.T831I	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELQ	HGNC	ENSG00000163312	tier1	-	-	54	0	0.00	36	24	40.00
DNAH2	0	genome.wustl.edu	37	17	7724577	7724577	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	17	7724577	7724577	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.11032	p.L3678F	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	tier1	-	-	39	0	0.00	50	17	25.37
LOC100288897	0	genome.wustl.edu	37	2	131175634	131175634	+	RNA	SNP	A	A	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	2	131175634	131175634	A	T	SNP	LOC100288897	ENST00000424873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	AC140481.1	Clone_based_vega_gene	ENSG00000178162	tier1	-	-	26	0	0.00	17	7	29.17
HLA-DOA	0	genome.wustl.edu	37	6	32975312	32975312	+	Missense_Mutation	SNP	A	A	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	6	32975312	32975312	A	T	SNP	HLA-DOA	ENST00000229829	human	ensembl	74_37	-1	known	missense	c.389	p.I130N	0.303	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DOA	HGNC	ENSG00000204252	tier1	-	-	46	0	0.00	29	4	12.12
NUFIP1	0	genome.wustl.edu	37	13	45517719	45517719	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	13	45517719	45517719	G	A	SNP	NUFIP1	ENST00000379161	human	ensembl	74_37	-1	known	missense	c.1229	p.A410V	0.002	NULL	pfam_NUFIP1_cons_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	NUFIP1	HGNC	ENSG00000083635	tier1	-	-	81	0	0.00	12	56	82.35
TLN2	0	genome.wustl.edu	37	15	62986578	62986578	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	15	62986578	62986578	G	A	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.1279	p.V427I	0.999	NULL	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914	tier1	-	-	45	0	0.00	24	16	40.00
UMPS	0	genome.wustl.edu	37	3	124456888	124456888	+	Silent	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	3	124456888	124456888	C	T	SNP	UMPS	ENST00000232607	human	ensembl	74_37	+1	known	silent	c.784	p.L262	0.051	pfam_OMPdeCOase_dom,superfamily_RibuloseP-bd_barrel,smart_OMPdeCOase_dom,tigrfam_OMPdecase	pfam_OMPdeCOase_dom,pfam_PRibTrfase_dom,superfamily_RibuloseP-bd_barrel,smart_OMPdeCOase_dom,tigrfam_OMPdecase,tigrfam_Or_phspho_trans_dom	-	no_errors	UMPS	HGNC	ENSG00000114491	tier1	-	-	32	0	0.00	24	6	20.00
LHX8	0	genome.wustl.edu	37	1	75609535	75609535	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	1	75609535	75609535	G	T	SNP	LHX8	ENST00000294638	human	ensembl	74_37	+1	known	missense	c.616	p.G206W	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX8	HGNC	ENSG00000162624	tier1	-	-	47	0	0.00	66	13	16.46
N4BP2L1	0	genome.wustl.edu	37	13	32976895	32976895	+	RNA	SNP	C	C	G			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	13	32976895	32976895	C	G	SNP	N4BP2L1	ENST00000459716	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.662	-	-	-	no_errors	N4BP2L1	HGNC	ENSG00000139597	tier1	-	-	32	0	0.00	3	36	92.31
MPP1	0	genome.wustl.edu	37	X	154020552	154020552	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	X	154020552	154020552	C	T	SNP	MPP1	ENST00000417435	human	ensembl	74_37	-1	known	missense	c.260	p.R87H	0.000	NULL	NULL	-	no_errors	MPP1	HGNC	ENSG00000130830	tier1	-	-	16	0	0.00	5	6	54.55
OR2AG2	0	genome.wustl.edu	37	11	6789507	6789507	+	Missense_Mutation	SNP	T	T	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	11	6789507	6789507	T	C	SNP	OR2AG2	ENST00000338569	human	ensembl	74_37	-1	known	missense	c.682	p.M228V	0.008	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AG2	HGNC	ENSG00000188124	tier1	-	-	85	0	0.00	23	32	58.18
OR8S1	0	genome.wustl.edu	37	12	48919809	48919809	+	Missense_Mutation	SNP	A	A	G			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	12	48919809	48919809	A	G	SNP	OR8S1	ENST00000310194	human	ensembl	74_37	+1	known	missense	c.395	p.Y132C	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8S1	HGNC	ENSG00000197376	tier1	-	-	65	0	0.00	30	29	49.15
KIAA1217	0	genome.wustl.edu	37	10	24762620	24762620	+	Missense_Mutation	SNP	A	A	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	10	24762620	24762620	A	T	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	missense	c.1310	p.N437I	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	tier1	-	-	37	0	0.00	0	12	100.00
WRAP53	0	genome.wustl.edu	37	17	7592062	7592062	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	17	7592062	7592062	G	A	SNP	WRAP53	ENST00000316024	human	ensembl	74_37	+1	known	missense	c.96	p.M32I	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499	tier1	-	-	25	0	0.00	11	33	75.00
KIF20B	0	genome.wustl.edu	37	10	91497902	91497903	+	In_Frame_Ins	INS	-	-	TAAAAG			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	10	91497902	91497903	-	TAAAAG	INS	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	in_frame_ins	c.3394_3395	p.1134in_frame_insVK	0.243:0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	tier1			NA	NA	NA	NA	NA	NA
RB1	0	genome.wustl.edu	37	13	49054629	49054629	+	RNA	SNP	A	A	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	13	49054629	49054629	A	C	SNP	RB1	ENST00000484879	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.153	-	-	-	no_errors	RB1	HGNC	ENSG00000139687	tier1	-	-	25	0	0.00	2	21	91.30
FCHSD1	0	genome.wustl.edu	37	5	141025697	141025697	+	Missense_Mutation	SNP	T	T	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	5	141025697	141025697	T	C	SNP	FCHSD1	ENST00000435817	human	ensembl	74_37	-1	known	missense	c.1106	p.E369G	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_FCH_dom,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	FCHSD1	HGNC	ENSG00000197948	tier1	-	-	58	0	0.00	17	5	22.73
CHRNG	0	genome.wustl.edu	37	2	233408075	233408075	+	Frame_Shift_Del	DEL	C	C	-			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	2	233408075	233408075	C	-	DEL	CHRNG	ENST00000389494	human	ensembl	74_37	+1	known	frame_shift_del	c.896	p.Q300fs	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNG	HGNC	ENSG00000196811	tier1			90	0	0.00	21	2	8.70
LPAR5	0	genome.wustl.edu	37	12	6729465	6729465	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	12	6729465	6729465	G	T	SNP	LPAR5	ENST00000329858	human	ensembl	74_37	-1	known	missense	c.950	p.A317D	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	LPAR5	HGNC	ENSG00000184574	tier1	-	-	28	0	0.00	9	6	40.00
C14orf39	0	genome.wustl.edu	37	14	60938375	60938375	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	14	60938375	60938375	G	A	SNP	C14orf39	ENST00000321731	human	ensembl	74_37	-1	known	missense	c.406	p.R136C	0.351	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008	tier1	rs34082126	-	33	0	0.00	20	5	20.00
KLK11	0	genome.wustl.edu	37	19	51525868	51525868	+	Missense_Mutation	SNP	T	T	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	19	51525868	51525868	T	A	SNP	KLK11	ENST00000594768	human	ensembl	74_37	-1	known	missense	c.782	p.K261M	0.998	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	KLK11	HGNC	ENSG00000167757	tier1	-	-	26	0	0.00	14	5	26.32
SETX	0	genome.wustl.edu	37	9	135140048	135140048	+	Missense_Mutation	SNP	C	C	G			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	9	135140048	135140048	C	G	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	missense	c.7699	p.D2567H	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290	tier1	-	-	102	0	0.00	72	11	13.25
KLF4	0	genome.wustl.edu	37	9	110249601	110249601	+	Silent	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	9	110249601	110249601	C	T	SNP	KLF4	ENST00000374672	human	ensembl	74_37	-1	known	silent	c.1074	p.P358	0.065	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF4	HGNC	ENSG00000136826	tier1	-	-	23	0	0.00	11	7	38.89
DOCK8	0	genome.wustl.edu	37	9	432324	432324	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	9	432324	432324	G	T	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	missense	c.4785	p.Q1595H	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	tier1	-	-	19	0	0.00	15	5	25.00
SYNPR	0	genome.wustl.edu	37	3	63600972	63600972	+	Missense_Mutation	SNP	T	T	C			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	3	63600972	63600972	T	C	SNP	SYNPR	ENST00000478300	human	ensembl	74_37	+1	known	missense	c.673	p.S225P	0.994	NULL	pfam_Marvel,prints_Synaptophysin/porin	-	no_errors	SYNPR	HGNC	ENSG00000163630	tier1	-	-	51	0	0.00	60	7	10.45
TOPBP1	0	genome.wustl.edu	37	3	133342943	133342943	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	3	133342943	133342943	C	T	SNP	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	missense	c.2881	p.V961I	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	tier1	-	-	11	0	0.00	21	13	37.14
COL19A1	0	genome.wustl.edu	37	6	70916680	70916680	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	6	70916680	70916680	C	T	SNP	COL19A1	ENST00000322773	human	ensembl	74_37	+1	known	missense	c.3299	p.S1100L	1.000	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	tier1	rs148400214	-	56	0	0.00	46	43	48.31
SLC44A3	0	genome.wustl.edu	37	1	95290119	95290119	+	Missense_Mutation	SNP	G	G	A			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	1	95290119	95290119	G	A	SNP	SLC44A3	ENST00000271227	human	ensembl	74_37	+1	known	missense	c.206	p.G69D	1.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A3	HGNC	ENSG00000143036	tier1	rs148935541	GMAF=0.0005	49	0	0.00	39	12	23.53
FAM178A	0	genome.wustl.edu	37	10	102684152	102684152	+	Missense_Mutation	SNP	C	C	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	10	102684152	102684152	C	T	SNP	FAM178A	ENST00000370269	human	ensembl	74_37	+1	known	missense	c.1394	p.T465M	0.249	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906	tier1	-	-	20	0	0.00	6	4	40.00
IGSF9B	0	genome.wustl.edu	37	11	133826591	133826591	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	11	133826591	133826591	G	T	SNP	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	missense	c.59	p.A20D	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854	tier1	-	-	72	0	0.00	27	4	12.90
IFI44L	0	genome.wustl.edu	37	1	79102855	79102855	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	1	79102855	79102855	G	T	SNP	IFI44L	ENST00000370751	human	ensembl	74_37	+1	known	missense	c.1015	p.V339L	0.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	IFI44L	HGNC	ENSG00000137959	tier1	-	-	50	0	0.00	36	36	49.32
MYRF	0	genome.wustl.edu	37	11	61547653	61547653	+	Missense_Mutation	SNP	G	G	T			TCGA-KD-A5QU-01A-11D-A27P-09	TCGA-KD-A5QU-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	20e81635-4d39-4b8f-aec6-3f96bc5d82ac	19773673-43e9-4c0d-acb8-9677ef088dcd	11	61547653	61547653	G	T	SNP	MYRF	ENST00000327797	human	ensembl	74_37	+1	known	missense	c.1343	p.G448V	0.009	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920	tier1	-	-	51	0	0.00	3	31	91.18
