Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ZC3H12B	0	genome.wustl.edu	37	X	64722228	64722228	+	Silent	SNP	T	T	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	X	64722228	64722228	T	A	SNP	ZC3H12B	ENST00000338957	human	ensembl	74_37	+1	known	silent	c.1650	p.G550	0.745	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	tier1	-	-	36	0	0.00	23	24	51.06
FGA	0	genome.wustl.edu	37	4	155507241	155507241	+	Missense_Mutation	SNP	T	T	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	4	155507241	155507241	T	A	SNP	FGA	ENST00000302053	human	ensembl	74_37	-1	known	missense	c.1340	p.E447V	0.992	pfam_Fibrinogen_aC	pfam_Fibrinogen_a/b/g_C_dom,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGA	HGNC	ENSG00000171560	tier1	-	-	76	0	0.00	55	12	17.91
DROSHA	0	genome.wustl.edu	37	5	31424571	31424571	+	Missense_Mutation	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	5	31424571	31424571	C	T	SNP	DROSHA	ENST00000344624	human	ensembl	74_37	-1	known	missense	c.3224	p.R1075H	1.000	superfamily_RNase_III_dom,smart_RNase_III_dom	pfam_RNase_III_dom,pfam_dsRNA-bd_dom,superfamily_RNase_III_dom,smart_RNase_III_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom,pfscan_RNase_III_dom	-	no_errors	DROSHA	HGNC	ENSG00000113360	tier1	-	-	49	0	0.00	50	8	13.79
KRCC1	0	genome.wustl.edu	37	2	88327723	88327723	+	Frame_Shift_Del	DEL	A	A	-			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	2	88327723	88327723	A	-	DEL	KRCC1	ENST00000347055	human	ensembl	74_37	-1	known	frame_shift_del	c.360	p.F120fs	0.004	NULL	NULL	-	no_errors	KRCC1	HGNC	ENSG00000172086	tier1			77	0	0.00	90	11	10.89
ENSG00000173213	0	genome.wustl.edu	37	18	49208	49208	+	Missense_Mutation	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	18	49208	49208	G	A	SNP	ENSG00000173213	ENST00000573909	human	ensembl	74_37	-1	putative	missense	c.11	p.P4L	0.997	NULL	pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin	-	no_errors	RP11-683L23.1	Clone_based_vega_gene	ENSG00000173213	tier1	-	-	49	0	0.00	35	8	18.60
NUGGC	0	genome.wustl.edu	37	8	27927797	27927797	+	Silent	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	8	27927797	27927797	G	A	SNP	NUGGC	ENST00000341513	human	ensembl	74_37	-1	known	silent	c.120	p.P40	0.987	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	NUGGC	HGNC	ENSG00000189233	tier1	-	-	36	0	0.00	13	9	40.91
PCID2	0	genome.wustl.edu	37	13	113840342	113840349	+	RNA	DEL	AAAAACAA	AAAAACAA	-			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	AAAAACAA	AAAAACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	13	113840342	113840349	AAAAACAA	-	DEL	PCID2	ENST00000493650	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.107:0.100:0.088:0.070:0.063:0.051:0.034:0.028	-	-	-	no_errors	PCID2	HGNC	ENSG00000126226	tier1			NA	NA	NA	NA	NA	NA
ENSG00000238737	0	genome.wustl.edu	37	15	23609668	23609668	+	RNA	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	15	23609668	23609668	C	T	SNP	ENSG00000238737	ENST00000459602	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.015	-	-	-	no_errors	AC100756.1	Clone_based_ensembl_gene	ENSG00000238737	tier1	-	-	147	0	0.00	295	95	24.30
TTC39C	0	genome.wustl.edu	37	18	21660677	21660677	+	Missense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	18	21660677	21660677	G	T	SNP	TTC39C	ENST00000317571	human	ensembl	74_37	+1	known	missense	c.589	p.A197S	1.000	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,pfam_Cohesin_loading_factor	-	no_errors	TTC39C	HGNC	ENSG00000168234	tier1	-	-	65	0	0.00	28	4	12.50
CATSPER1	0	genome.wustl.edu	37	11	65789005	65789005	+	Silent	SNP	C	C	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	11	65789005	65789005	C	A	SNP	CATSPER1	ENST00000312106	human	ensembl	74_37	-1	known	silent	c.1653	p.L551	0.535	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER1	HGNC	ENSG00000175294	tier1	-	-	68	0	0.00	32	29	47.54
LRRTM2	0	genome.wustl.edu	37	5	138209312	138209313	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	5	138209312	138209313	CA	-	DEL	LRRTM2	ENST00000274711	human	ensembl	74_37	-1	known	frame_shift_del	c.938_937	p.W313fs	1.000:1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM2	HGNC	ENSG00000146006	tier1			15	0	0.00	11	6	35.29
TEX15	0	genome.wustl.edu	37	8	30701742	30701742	+	Missense_Mutation	SNP	C	C	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	8	30701742	30701742	C	A	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.4792	p.V1598L	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	tier1	-	-	28	0	0.00	14	12	46.15
CDH9	0	genome.wustl.edu	37	5	26988306	26988306	+	Silent	SNP	A	A	C			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	5	26988306	26988306	A	C	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	silent	c.135	p.G45	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	tier1	-	-	33	0	0.00	27	39	59.09
BCORL1	0	genome.wustl.edu	37	X	129147377	129147377	+	Missense_Mutation	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	X	129147377	129147377	C	T	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	missense	c.629	p.S210L	0.476	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	tier1	-	-	24	0	0.00	15	14	48.28
FUT1	0	genome.wustl.edu	37	19	49253749	49253749	+	Missense_Mutation	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	19	49253749	49253749	C	T	SNP	FUT1	ENST00000310160	human	ensembl	74_37	-1	known	missense	c.790	p.G264S	0.988	pfam_Glyco_trans_11	pfam_Glyco_trans_11	-	no_errors	FUT1	HGNC	ENSG00000174951	tier1	-	-	87	0	0.00	56	34	37.78
NCOA7	0	genome.wustl.edu	37	6	126136412	126136412	+	RNA	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	6	126136412	126136412	G	A	SNP	NCOA7	ENST00000487635	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	NCOA7	HGNC	ENSG00000111912	tier1	-	-	47	0	0.00	31	20	39.22
TFR2	0	genome.wustl.edu	37	7	100226977	100226977	+	Missense_Mutation	SNP	C	C	G			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	7	100226977	100226977	C	G	SNP	TFR2	ENST00000223051	human	ensembl	74_37	-1	known	missense	c.1289	p.G430A	1.000	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFR2	HGNC	ENSG00000106327	tier1	-	-	60	0	0.00	24	55	69.62
UNC79	0	genome.wustl.edu	37	14	94066938	94066938	+	Silent	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	14	94066938	94066938	C	T	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	silent	c.3396	p.F1132	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958	tier1	-	-	31	0	0.00	31	12	27.91
SKI	0	genome.wustl.edu	37	1	2235884	2235884	+	Missense_Mutation	SNP	G	G	C			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	1	2235884	2235884	G	C	SNP	SKI	ENST00000378536	human	ensembl	74_37	+1	known	missense	c.1627	p.E543Q	1.000	NULL	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKI	HGNC	ENSG00000157933	tier1	-	-	61	0	0.00	112	65	36.72
CELSR3	0	genome.wustl.edu	37	3	48697124	48697124	+	Missense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	3	48697124	48697124	G	T	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.2944	p.Q982K	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	tier1	-	-	64	0	0.00	72	19	20.88
STK32C	0	genome.wustl.edu	37	10	134059421	134059421	+	Nonsense_Mutation	SNP	T	T	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	10	134059421	134059421	T	A	SNP	STK32C	ENST00000368625	human	ensembl	74_37	-1	known	nonsense	c.340	p.K114*	0.996	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK32C	HGNC	ENSG00000165752	tier1	-	-	58	0	0.00	33	49	59.76
ABCF1	0	genome.wustl.edu	37	6	30545854	30545854	+	Frame_Shift_Del	DEL	A	A	-			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	6	30545854	30545854	A	-	DEL	ABCF1	ENST00000326195	human	ensembl	74_37	+1	known	frame_shift_del	c.218	p.K76fs	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574	tier1			26	0	0.00	34	6	15.00
SNX14	0	genome.wustl.edu	37	6	86215639	86215639	+	RNA	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	6	86215639	86215639	G	T	SNP	SNX14	ENST00000508980	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SNX14	HGNC	ENSG00000135317	tier1	-	-	23	0	0.00	24	5	17.24
GSC	0	genome.wustl.edu	37	14	95235493	95235493	+	Missense_Mutation	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	14	95235493	95235493	C	T	SNP	GSC	ENST00000238558	human	ensembl	74_37	-1	known	missense	c.417	p.M139I	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	GSC	HGNC	ENSG00000133937	tier1	-	-	32	0	0.00	18	4	18.18
CCDC158	0	genome.wustl.edu	37	4	77288467	77288467	+	Missense_Mutation	SNP	T	T	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	4	77288467	77288467	T	A	SNP	CCDC158	ENST00000388914	human	ensembl	74_37	-1	known	missense	c.1810	p.M604L	0.913	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749	tier1	-	-	25	0	0.00	20	8	28.57
CRLF2	0	genome.wustl.edu	37	X	1331587	1331587	+	RNA	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	X	1331587	1331587	G	T	SNP	CRLF2	ENST00000467626	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CRLF2	HGNC	ENSG00000205755	tier1	-	-	52	0	0.00	40	4	9.09
DPYSL5	0	genome.wustl.edu	37	2	27121387	27121387	+	Missense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	2	27121387	27121387	G	T	SNP	DPYSL5	ENST00000288699	human	ensembl	74_37	+1	known	missense	c.20	p.S7I	1.000	superfamily_Metal-dep_hydrolase_composite	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851	tier1	-	-	54	0	0.00	58	14	19.44
CNBD1	0	genome.wustl.edu	37	8	88296985	88296985	+	Missense_Mutation	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	8	88296985	88296985	C	T	SNP	CNBD1	ENST00000518476	human	ensembl	74_37	+1	known	missense	c.851	p.T284I	0.003	superfamily_cNMP-bd-like	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNBD1	HGNC	ENSG00000176571	tier1	-	-	37	0	0.00	46	4	8.00
TRPM4	0	genome.wustl.edu	37	19	49713967	49713967	+	Missense_Mutation	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	19	49713967	49713967	G	A	SNP	TRPM4	ENST00000252826	human	ensembl	74_37	+1	known	missense	c.3329	p.R1110Q	0.799	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529	tier1	-	-	79	0	0.00	71	40	36.04
C14orf177	0	genome.wustl.edu	37	14	99183433	99183433	+	Missense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	14	99183433	99183433	G	T	SNP	C14orf177	ENST00000325812	human	ensembl	74_37	+1	known	missense	c.200	p.G67V	0.001	NULL	NULL	-	no_errors	C14orf177	HGNC	ENSG00000176605	tier1	-	-	41	0	0.00	27	63	70.00
FAM111B	0	genome.wustl.edu	37	11	58892377	58892377	+	Frame_Shift_Del	DEL	A	A	-			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	11	58892377	58892377	A	-	DEL	FAM111B	ENST00000343597	human	ensembl	74_37	+1	known	frame_shift_del	c.807	p.K272fs	0.000	NULL	superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111B	HGNC	ENSG00000189057	tier1			17	0	0.00	15	3	16.67
LNPEP	0	genome.wustl.edu	37	5	96360291	96360291	+	Missense_Mutation	SNP	C	C	G			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	5	96360291	96360291	C	G	SNP	LNPEP	ENST00000231368	human	ensembl	74_37	+1	known	missense	c.2628	p.F876L	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LNPEP	HGNC	ENSG00000113441	tier1	-	-	49	0	0.00	52	13	20.00
OR4C3	0	genome.wustl.edu	37	11	48346842	48346842	+	Missense_Mutation	SNP	T	T	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	11	48346842	48346842	T	A	SNP	OR4C3	ENST00000319856	human	ensembl	74_37	+1	known	missense	c.350	p.I117N	0.314	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C3	HGNC	ENSG00000176547	tier1	-	-	119	0	0.00	130	13	9.09
SCRN3	0	genome.wustl.edu	37	2	175292593	175292593	+	Missense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	2	175292593	175292593	G	T	SNP	SCRN3	ENST00000272732	human	ensembl	74_37	+1	known	missense	c.1245	p.Q415H	0.001	NULL	pfam_Peptidase_C69	-	no_errors	SCRN3	HGNC	ENSG00000144306	tier1	rs79038555	-	39	0	0.00	32	6	15.79
DSG2	0	genome.wustl.edu	37	18	29122725	29122725	+	Silent	SNP	A	A	C			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	18	29122725	29122725	A	C	SNP	DSG2	ENST00000261590	human	ensembl	74_37	+1	known	silent	c.2244	p.A748	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG2	HGNC	ENSG00000046604	tier1	-	-	50	0	0.00	27	22	44.90
PAPPA	0	genome.wustl.edu	37	9	119130031	119130031	+	Nonsense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	9	119130031	119130031	G	T	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	nonsense	c.4603	p.E1535*	0.372	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	tier1	-	-	35	0	0.00	29	4	12.12
ATRX	0	genome.wustl.edu	37	X	76872172	76872172	+	Missense_Mutation	SNP	T	T	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	X	76872172	76872172	T	A	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.5475	p.K1825N	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	84	0	0.00	26	9	25.71
CETP	0	genome.wustl.edu	37	16	57017287	57017287	+	Silent	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	16	57017287	57017287	C	T	SNP	CETP	ENST00000200676	human	ensembl	74_37	+1	known	silent	c.1371	p.L457	0.999	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C,pirsf_Cholesteryl_ester_transfer	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C,pirsf_Cholesteryl_ester_transfer	-	no_errors	CETP	HGNC	ENSG00000087237	tier1	-	-	41	0	0.00	11	20	64.52
OR4N5	0	genome.wustl.edu	37	14	20612593	20612593	+	Missense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	14	20612593	20612593	G	T	SNP	OR4N5	ENST00000333629	human	ensembl	74_37	+1	known	missense	c.699	p.K233N	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4N5	HGNC	ENSG00000184394	tier1	-	-	71	0	0.00	55	20	26.67
SYCP1	0	genome.wustl.edu	37	1	115487553	115487553	+	Nonsense_Mutation	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	1	115487553	115487553	C	T	SNP	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	nonsense	c.2104	p.R702*	0.985	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765	tier1	-	-	44	0	0.00	44	9	16.98
C2orf50	0	genome.wustl.edu	37	2	11284204	11284204	+	Silent	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	2	11284204	11284204	G	A	SNP	C2orf50	ENST00000381585	human	ensembl	74_37	+1	known	silent	c.456	p.K152	1.000	NULL	NULL	-	no_errors	C2orf50	HGNC	ENSG00000150873	tier1	-	-	38	0	0.00	34	9	20.93
RNF212	0	genome.wustl.edu	37	4	1087327	1087328	+	In_Frame_Ins	INS	-	-	CTGCCCAGGCTGGAGCCAGCC			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	4	1087327	1087328	-	CTGCCCAGGCTGGAGCCAGCC	INS	RNF212	ENST00000333673	human	ensembl	74_37	-1	known	in_frame_ins	c.722_721	p.S241in_frame_insWLAPAWAA	0.085:0.000	NULL	pfscan_Znf_RING	-	no_errors	RNF212	HGNC	ENSG00000178222	tier1			NA	NA	NA	NA	NA	NA
ENSG00000251226	0	genome.wustl.edu	37	11	134605647	134605647	+	RNA	SNP	A	A	G			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	11	134605647	134605647	A	G	SNP	ENSG00000251226	ENST00000513405	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	RP11-469N6.1	Clone_based_vega_gene	ENSG00000251226	tier1	rs113767151	-	113	0	0.00	62	6	8.82
SLC26A8	0	genome.wustl.edu	37	6	35945038	35945038	+	Silent	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	6	35945038	35945038	G	A	SNP	SLC26A8	ENST00000355574	human	ensembl	74_37	-1	known	silent	c.1116	p.L372	0.094	pfam_Sulph_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A8	HGNC	ENSG00000112053	tier1	-	-	61	0	0.00	37	27	42.19
TP53	0	genome.wustl.edu	37	17	7578266	7578266	+	Missense_Mutation	SNP	T	T	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	17	7578266	7578266	T	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.583	p.I195F	0.999	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	48	0	0.00	32	24	42.86
FAM86B1	0	genome.wustl.edu	37	8	12044046	12044046	+	Missense_Mutation	SNP	A	A	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	8	12044046	12044046	A	T	SNP	FAM86B1	ENST00000448228	human	ensembl	74_37	-1	known	missense	c.455	p.F152Y	1.000	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86B1	HGNC	ENSG00000186523	tier1	-	-	393	0	0.00	433	96	18.15
FLI1	0	genome.wustl.edu	37	11	128642855	128642855	+	Missense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	11	128642855	128642855	G	T	SNP	FLI1	ENST00000527786	human	ensembl	74_37	+1	known	missense	c.564	p.L188F	0.997	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	FLI1	HGNC	ENSG00000151702	tier1	-	-	29	0	0.00	32	4	11.11
FRMD1	0	genome.wustl.edu	37	6	168463585	168463585	+	Missense_Mutation	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	6	168463585	168463585	G	A	SNP	FRMD1	ENST00000283309	human	ensembl	74_37	-1	known	missense	c.859	p.H287Y	1.000	pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD1	HGNC	ENSG00000153303	tier1	-	-	45	0	0.00	46	4	8.00
SMPD1	0	genome.wustl.edu	37	11	6411691	6411691	+	RNA	SNP	C	C	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	11	6411691	6411691	C	A	SNP	SMPD1	ENST00000533196	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SMPD1	HGNC	ENSG00000166311	tier1	-	-	14	0	0.00	8	5	38.46
RIN2	0	genome.wustl.edu	37	20	19981949	19981950	+	RNA	INS	-	-	AGG			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	20	19981949	19981950	-	AGG	INS	RIN2	ENST00000484638	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983:0.793	-	-	-	no_errors	RIN2	HGNC	ENSG00000132669	tier1			39	0	0.00	49	25	33.78
GRM1	0	genome.wustl.edu	37	6	146625761	146625761	+	Missense_Mutation	SNP	A	A	G			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	6	146625761	146625761	A	G	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.965	p.D322G	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822	tier1	-	-	67	0	0.00	69	11	13.58
DCC	0	genome.wustl.edu	37	18	50451640	50451640	+	Missense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	18	50451640	50451640	G	T	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.885	p.L295F	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323	tier1	-	-	41	0	0.00	27	3	10.00
SPTA1	0	genome.wustl.edu	37	1	158585053	158585053	+	Silent	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	1	158585053	158585053	C	T	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	silent	c.6741	p.Q2247	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	tier1	-	-	111	0	0.00	76	29	27.62
ENSG00000215067	0	genome.wustl.edu	37	17	6905883	6905883	+	Missense_Mutation	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	17	6905883	6905883	G	A	SNP	ENSG00000215067	ENST00000574377	human	ensembl	74_37	-1	putative	missense	c.190	p.H64Y	0.066	NULL	NULL	-	no_errors	AC027763.2	Clone_based_vega_gene	ENSG00000215067	tier1	-	-	41	0	0.00	15	32	68.09
LOC285556	0	genome.wustl.edu	37	4	100570993	100570993	+	Missense_Mutation	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	4	100570993	100570993	G	A	SNP	LOC285556	ENST00000511828	human	ensembl	74_37	-1	putative	missense	c.4813	p.P1605S	0.924	NULL	NULL	-	no_errors	RP11-766F14.2	Clone_based_vega_gene	ENSG00000248713	tier1	-	-	59	0	0.00	35	18	33.96
BPIFB3	0	genome.wustl.edu	37	20	31647706	31647706	+	Silent	SNP	T	T	G			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	20	31647706	31647706	T	G	SNP	BPIFB3	ENST00000375494	human	ensembl	74_37	+1	known	silent	c.396	p.G132	0.997	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB3	HGNC	ENSG00000186190	tier1	-	-	46	0	0.00	46	18	28.12
PI4KA	0	genome.wustl.edu	37	22	21065645	21065645	+	Silent	SNP	A	A	G			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	22	21065645	21065645	A	G	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	silent	c.5907	p.G1969	0.992	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	tier1	rs444310	-	118	0	0.00	68	9	11.69
MIS18BP1	0	genome.wustl.edu	37	14	45673327	45673327	+	Missense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	14	45673327	45673327	G	T	SNP	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	missense	c.3384	p.N1128K	0.935	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534	tier1	-	-	41	0	0.00	31	4	11.43
MTUS1	0	genome.wustl.edu	37	8	17612997	17612997	+	Missense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	8	17612997	17612997	G	T	SNP	MTUS1	ENST00000262102	human	ensembl	74_37	-1	known	missense	c.320	p.A107E	0.000	NULL	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422	tier1	-	-	58	0	0.00	59	16	21.33
EYS	0	genome.wustl.edu	37	6	65098712	65098712	+	Silent	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	6	65098712	65098712	G	A	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	silent	c.5949	p.N1983	0.264	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	tier1	-	-	27	0	0.00	20	8	27.59
ENSG00000215933	0	genome.wustl.edu	37	X	71372202	71372209	+	RNA	DEL	CGCGCGCA	CGCGCGCA	-			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	CGCGCGCA	CGCGCGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	X	71372202	71372209	CGCGCGCA	-	DEL	ENSG00000215933	ENST00000401114	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.001:0.015:0.009	-	-	-	no_errors	BX119917.1	Clone_based_ensembl_gene	ENSG00000215933	tier1			NA	NA	NA	NA	NA	NA
LRTM1	0	genome.wustl.edu	37	3	54952665	54952665	+	Missense_Mutation	SNP	C	C	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	3	54952665	54952665	C	A	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	missense	c.859	p.A287S	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771	tier1	rs200994023	-	48	0	0.00	43	15	25.86
NUMBL	0	genome.wustl.edu	37	19	41173893	41173898	+	In_Frame_Del	DEL	TGCTGT	TGCTGT	-			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	TGCTGT	TGCTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	19	41173893	41173898	TGCTGT	-	DEL	NUMBL	ENST00000252891	human	ensembl	74_37	-1	known	in_frame_del	c.1310_1305	p.QQ439in_frame_del	1.000:1.000:1.000:1.000:1.000:0.998	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pirsf_Numb/numb-like,pfscan_PTB/PI_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245	tier1			NA	NA	NA	NA	NA	NA
LOC150776	0	genome.wustl.edu	37	2	132277977	132277977	+	RNA	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	2	132277977	132277977	G	A	SNP	LOC150776	ENST00000438378	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.760	-	-	-	no_errors	AC093838.4	Clone_based_vega_gene	ENSG00000152117	tier1	-	-	130	1	0.76	119	30	20.00
ZNF584	0	genome.wustl.edu	37	19	58928651	58928651	+	Missense_Mutation	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	19	58928651	58928651	G	A	SNP	ZNF584	ENST00000306910	human	ensembl	74_37	+1	known	missense	c.766	p.A256T	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF584	HGNC	ENSG00000171574	tier1	-	-	45	0	0.00	15	19	55.88
KRT121P	0	genome.wustl.edu	37	12	52651996	52651996	+	RNA	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	12	52651996	52651996	C	T	SNP	KRT121P	ENST00000529785	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KRT121P	HGNC	ENSG00000135477	tier1	-	-	179	0	0.00	127	55	30.22
CDK9	0	genome.wustl.edu	37	9	130549788	130549788	+	RNA	SNP	C	C	G			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	9	130549788	130549788	C	G	SNP	CDK9	ENST00000491521	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CDK9	HGNC	ENSG00000136807	tier1	-	-	44	0	0.00	35	7	16.67
OR51G1	0	genome.wustl.edu	37	11	4945070	4945070	+	Missense_Mutation	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	11	4945070	4945070	C	T	SNP	OR51G1	ENST00000321961	human	ensembl	74_37	-1	known	missense	c.500	p.R167H	0.181	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G1	HGNC	ENSG00000176879	tier1	-	-	48	0	0.00	38	14	26.42
IMPACT	0	genome.wustl.edu	37	18	22029853	22029853	+	Missense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	18	22029853	22029853	G	T	SNP	IMPACT	ENST00000284202	human	ensembl	74_37	+1	known	missense	c.830	p.R277L	1.000	pfam_Impact_N,superfamily_Ribosomal_S5_D2-typ_fold	pfam_Impact_N,pfam_RWD-domain,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	-	no_errors	IMPACT	HGNC	ENSG00000154059	tier1	-	-	50	0	0.00	31	4	11.43
SKI	0	genome.wustl.edu	37	1	2235296	2235296	+	Missense_Mutation	SNP	G	G	C			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	1	2235296	2235296	G	C	SNP	SKI	ENST00000378536	human	ensembl	74_37	+1	known	missense	c.1229	p.S410T	1.000	NULL	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKI	HGNC	ENSG00000157933	tier1	-	-	74	0	0.00	113	76	40.21
PIK3C2G	0	genome.wustl.edu	37	12	18715824	18715824	+	Missense_Mutation	SNP	A	A	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	12	18715824	18715824	A	T	SNP	PIK3C2G	ENST00000538779	human	ensembl	74_37	+1	known	missense	c.3778	p.N1260Y	0.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	tier1	-	-	34	0	0.00	16	13	44.83
VPS35	0	genome.wustl.edu	37	16	46696380	46696380	+	Nonsense_Mutation	SNP	A	A	C			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	16	46696380	46696380	A	C	SNP	VPS35	ENST00000299138	human	ensembl	74_37	-1	known	nonsense	c.1842	p.Y614*	1.000	pfam_VPS35,superfamily_ARM-type_fold	pfam_VPS35,superfamily_ARM-type_fold	-	no_errors	VPS35	HGNC	ENSG00000069329	tier1	-	-	61	0	0.00	32	15	31.91
ANKRD35	0	genome.wustl.edu	37	1	145561425	145561425	+	Silent	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	1	145561425	145561425	G	A	SNP	ANKRD35	ENST00000355594	human	ensembl	74_37	+1	known	silent	c.1113	p.Q371	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD35	HGNC	ENSG00000198483	tier1	-	-	21	0	0.00	24	8	25.00
ANGEL1	0	genome.wustl.edu	37	14	77275799	77275799	+	Frame_Shift_Del	DEL	T	T	-			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	14	77275799	77275799	T	-	DEL	ANGEL1	ENST00000251089	human	ensembl	74_37	-1	known	frame_shift_del	c.252	p.G85fs	0.782	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL1	HGNC	ENSG00000013523	tier1			44	0	0.00	14	2	12.50
FLJ36000	0	genome.wustl.edu	37	17	21911364	21911364	+	RNA	SNP	T	T	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	17	21911364	21911364	T	A	SNP	FLJ36000	ENST00000581223	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-744K17.9	Clone_based_vega_gene	ENSG00000266795	tier1	-	-	21	0	0.00	14	15	51.72
SMARCA4	0	genome.wustl.edu	37	19	11094868	11094868	+	Missense_Mutation	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	19	11094868	11094868	C	T	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.41	p.P14L	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	tier1	-	-	94	0	0.00	44	43	49.43
DLC1	0	genome.wustl.edu	37	8	13162758	13162758	+	Silent	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	8	13162758	13162758	G	A	SNP	DLC1	ENST00000511869	human	ensembl	74_37	-1	novel	silent	c.1368	p.F456	0.000	NULL	NULL	-	no_errors	DLC1	HGNC	ENSG00000164741	tier1	-	-	58	0	0.00	39	7	15.22
GPC5	0	genome.wustl.edu	37	13	92345903	92345903	+	Missense_Mutation	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	13	92345903	92345903	G	A	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	missense	c.788	p.G263D	0.915	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	tier1	-	-	45	0	0.00	16	26	61.90
UNC80	0	genome.wustl.edu	37	2	210837868	210837868	+	Missense_Mutation	SNP	A	A	G			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	2	210837868	210837868	A	G	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	missense	c.8263	p.S2755G	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406	tier1	rs201695718	-	36	0	0.00	21	4	16.00
LOC100131347	0	genome.wustl.edu	37	17	37263888	37263888	+	RNA	SNP	A	A	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	17	37263888	37263888	A	T	SNP	LOC100131347	ENST00000578423	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2206N4.4	Clone_based_vega_gene	ENSG00000263818	tier1	-	-	49	0	0.00	13	22	62.86
ENSG00000215067	0	genome.wustl.edu	37	17	6905806	6905806	+	Missense_Mutation	SNP	G	G	C			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	17	6905806	6905806	G	C	SNP	ENSG00000215067	ENST00000574377	human	ensembl	74_37	-1	putative	missense	c.267	p.F89L	0.016	NULL	NULL	-	no_errors	AC027763.2	Clone_based_vega_gene	ENSG00000215067	tier1	-	-	85	0	0.00	49	55	52.88
NEAT1	0	genome.wustl.edu	37	11	65212047	65212047	+	RNA	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	11	65212047	65212047	C	T	SNP	NEAT1	ENST00000501122	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NEAT1	HGNC	ENSG00000245532	tier1	-	-	35	0	0.00	25	17	40.48
BRINP3	0	genome.wustl.edu	37	1	190234179	190234179	+	Missense_Mutation	SNP	T	T	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	1	190234179	190234179	T	A	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.434	p.E145V	1.000	pfam_MACPF,smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670	tier1	-	-	47	0	0.00	23	27	52.94
DOCK8	0	genome.wustl.edu	37	9	311953	311953	+	Splice_Site	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	9	311953	311953	G	A	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	splice_site	c.529-1	e6-1	0.979	-	-	-	no_errors	DOCK8	HGNC	ENSG00000107099	tier1	-	-	56	0	0.00	53	15	22.06
ENSG00000221096	0	genome.wustl.edu	37	15	59443246	59443246	+	RNA	SNP	A	A	G			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	15	59443246	59443246	A	G	SNP	ENSG00000221096	ENST00000408169	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors	AC092757.1	Clone_based_ensembl_gene	ENSG00000221096	tier1	-	-	14	0	0.00	15	5	25.00
USP50	0	genome.wustl.edu	37	15	50835876	50835876	+	Silent	SNP	T	T	G			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	15	50835876	50835876	T	G	SNP	USP50	ENST00000532404	human	ensembl	74_37	-1	known	silent	c.363	p.P121	0.017	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP50	HGNC	ENSG00000170236	tier1	-	-	45	0	0.00	15	24	61.54
MSLN	0	genome.wustl.edu	37	16	816740	816740	+	Missense_Mutation	SNP	G	G	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	16	816740	816740	G	A	SNP	MSLN	ENST00000382862	human	ensembl	74_37	+1	known	missense	c.1327	p.A443T	0.000	pfam_Mesothelin	pfam_Mesothelin	-	no_errors	MSLN	HGNC	ENSG00000102854	tier1	-	-	69	0	0.00	48	21	30.43
ELMSAN1	0	genome.wustl.edu	37	14	74186107	74186107	+	Nonsense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	14	74186107	74186107	G	T	SNP	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	nonsense	c.3035	p.S1012*	0.987	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030	tier1	-	-	43	0	0.00	40	4	9.09
DNM1P34	0	genome.wustl.edu	37	15	75592652	75592652	+	RNA	SNP	T	T	C			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	15	75592652	75592652	T	C	SNP	DNM1P34	ENST00000567292	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	DNM1P34	HGNC	ENSG00000260357	tier1	-	-	25	0	0.00	17	6	26.09
MMP24	0	genome.wustl.edu	37	20	33851607	33851607	+	Silent	SNP	C	C	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	20	33851607	33851607	C	T	SNP	MMP24	ENST00000246186	human	ensembl	74_37	+1	known	silent	c.831	p.F277	1.000	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP24	HGNC	ENSG00000125966	tier1	-	-	82	0	0.00	64	48	42.86
MMP26	0	genome.wustl.edu	37	11	5012728	5012728	+	Splice_Site	SNP	T	T	C			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	11	5012728	5012728	T	C	SNP	MMP26	ENST00000300762	human	ensembl	74_37	+1	known	splice_site	c.595+2	e4+2	0.992	-	-	-	no_errors	MMP26	HGNC	ENSG00000167346	tier1	-	-	130	0	0.00	115	25	17.86
SYNE2	0	genome.wustl.edu	37	14	64532361	64532361	+	Missense_Mutation	SNP	G	G	T			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	14	64532361	64532361	G	T	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.10424	p.S3475I	0.999	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	tier1	-	-	43	0	0.00	54	5	8.47
SAMM50	0	genome.wustl.edu	37	22	44359061	44359061	+	RNA	SNP	C	C	A			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	22	44359061	44359061	C	A	SNP	SAMM50	ENST00000493161	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAMM50	HGNC	ENSG00000100347	tier1	-	-	17	0	0.00	3	10	76.92
PDCL	0	genome.wustl.edu	37	9	125585434	125585434	+	Missense_Mutation	SNP	A	A	C			TCGA-KF-A41W-01A-11D-A24N-09	TCGA-KF-A41W-11A-11D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a4bb569a-6cf7-4dfc-98d7-12cfaac76cdc	0cc19c64-6b2f-4150-a12f-d6fd1d3a10e7	9	125585434	125585434	A	C	SNP	PDCL	ENST00000259467	human	ensembl	74_37	-1	known	missense	c.215	p.L72W	1.000	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,prints_Phosducin	-	no_errors	PDCL	HGNC	ENSG00000136940	tier1	-	-	101	0	0.00	96	11	10.28
