Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CAAP1	0	genome.wustl.edu	37	9	26886119	26886120	+	Frame_Shift_Ins	INS	-	-	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	9	26886119	26886120	-	T	INS	CAAP1	ENST00000333916	human	ensembl	74_37	-1	known	frame_shift_ins	c.572_571	p.I191fs	1.000:1.000	NULL	NULL	-	no_errors	CAAP1	HGNC	ENSG00000120159	tier1			26	0	0.00	27	4	12.90
KRTAP4-5	0	genome.wustl.edu	37	17	39305800	39305814	+	In_Frame_Del	DEL	TGGATTCACAGCAAT	TGGATTCACAGCAAT	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	TGGATTCACAGCAAT	TGGATTCACAGCAAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	17	39305800	39305814	TGGATTCACAGCAAT	-	DEL	KRTAP4-5	ENST00000343246	human	ensembl	74_37	-1	known	in_frame_del	c.220_206	p.YCCESS69in_frame_delC	0.689:0.524:0.472:0.042:0.004:0.003:0.006:0.126:0.849:0.943:0.982:0.981:0.896:0.000:0.000	NULL	NULL	-	no_errors	KRTAP4-5	HGNC	ENSG00000198271	tier1			NA	NA	NA	NA	NA	NA
OR10W1	0	genome.wustl.edu	37	11	58034972	58034972	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	11	58034972	58034972	G	T	SNP	OR10W1	ENST00000395079	human	ensembl	74_37	-1	known	missense	c.359	p.P120Q	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10W1	HGNC	ENSG00000172772	tier1	-	-	37	0	0.00	16	3	15.79
DOCK2	0	genome.wustl.edu	37	5	169482352	169482352	+	Silent	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	5	169482352	169482352	C	A	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	silent	c.4257	p.P1419	0.147	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	tier1	-	-	37	0	0.00	23	3	11.54
WHAMMP2	0	genome.wustl.edu	37	15	29000160	29000162	+	RNA	DEL	ATT	ATT	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	ATT	ATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	15	29000160	29000162	ATT	-	DEL	WHAMMP2	ENST00000512149	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.032:0.037:0.049	-	-	-	no_errors	WHAMMP2	HGNC	ENSG00000248334	tier1			8	0	0.00	4	4	50.00
OR13C5	0	genome.wustl.edu	37	9	107361256	107361256	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	9	107361256	107361256	C	T	SNP	OR13C5	ENST00000374779	human	ensembl	74_37	-1	known	missense	c.439	p.G147R	0.012	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C5	HGNC	ENSG00000255800	tier1	-	-	65	0	0.00	36	13	26.53
MAP7D1	0	genome.wustl.edu	37	1	36644133	36644133	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	1	36644133	36644133	C	T	SNP	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	missense	c.1822	p.R608C	1.000	pfam_MAP7	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871	tier1	-	-	50	0	0.00	12	26	68.42
SERPINI1	0	genome.wustl.edu	37	3	167508312	167508312	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	3	167508312	167508312	G	T	SNP	SERPINI1	ENST00000295777	human	ensembl	74_37	+1	known	missense	c.403	p.A135S	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINI1	HGNC	ENSG00000163536	tier1	-	-	31	0	0.00	15	3	16.67
TMEM191C	0	genome.wustl.edu	37	22	21822373	21822385	+	RNA	DEL	AGGATCCGGGGGT	AGGATCCGGGGGT	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	AGGATCCGGGGGT	AGGATCCGGGGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	22	21822373	21822385	AGGATCCGGGGGT	-	DEL	TMEM191C	ENST00000449424	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.005:0.001:0.001:0.002:0.003:0.000:0.000:0.000:0.057:0.077:0.000:0.000	-	-	-	no_errors	TMEM191C	HGNC	ENSG00000206140	tier1			NA	NA	NA	NA	NA	NA
IL13RA2	0	genome.wustl.edu	37	X	114248419	114248419	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	X	114248419	114248419	C	T	SNP	IL13RA2	ENST00000243213	human	ensembl	74_37	-1	known	missense	c.434	p.C145Y	0.884	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA2	HGNC	ENSG00000123496	tier1	-	-	80	0	0.00	18	23	56.10
CACNA1B	0	genome.wustl.edu	37	9	140850187	140850187	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	9	140850187	140850187	C	A	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.1108	p.R370S	1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	tier1	-	-	76	0	0.00	32	4	11.11
TET3	0	genome.wustl.edu	37	2	74274511	74274511	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	2	74274511	74274511	G	T	SNP	TET3	ENST00000409262	human	ensembl	74_37	+1	known	missense	c.1062	p.K354N	0.995	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605	tier1	-	-	35	0	0.00	40	4	9.09
SERPINB9	0	genome.wustl.edu	37	6	2890727	2890727	+	Silent	SNP	A	A	G			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	6	2890727	2890727	A	G	SNP	SERPINB9	ENST00000380698	human	ensembl	74_37	-1	known	silent	c.801	p.V267	0.001	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom,prints_Serpin_B9/Maspin	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom,prints_Serpin_B9/Maspin	-	no_errors	SERPINB9	HGNC	ENSG00000170542	tier1	-	-	21	0	0.00	7	15	68.18
LOC101927806	0	genome.wustl.edu	37	1	17198711	17198711	+	RNA	SNP	G	G	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	1	17198711	17198711	G	A	SNP	LOC101927806	ENST00000438002	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	U1	RFAM	ENSG00000228549	tier1	-	-	37	0	0.00	42	9	17.65
TRIM44	0	genome.wustl.edu	37	11	35828045	35828045	+	RNA	SNP	C	C	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	11	35828045	35828045	C	T	SNP	TRIM44	ENST00000532066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM44	HGNC	ENSG00000166326	tier1	-	-	73	0	0.00	42	18	30.00
DCAF7	0	genome.wustl.edu	37	17	61666515	61666515	+	Missense_Mutation	SNP	T	T	C			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	17	61666515	61666515	T	C	SNP	DCAF7	ENST00000310827	human	ensembl	74_37	+1	known	missense	c.1010	p.L337P	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF7	HGNC	ENSG00000136485	tier1	-	-	40	0	0.00	43	4	8.51
SCD	0	genome.wustl.edu	37	10	102107836	102107838	+	In_Frame_Del	DEL	ACC	ACC	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	ACC	ACC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	10	102107836	102107838	ACC	-	DEL	SCD	ENST00000370355	human	ensembl	74_37	+1	known	in_frame_del	c.43_45	p.T18in_frame_del	0.998:0.990:0.094	NULL	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD	HGNC	ENSG00000099194	tier1			31	0	0.00	10	2	16.67
PTPN4	0	genome.wustl.edu	37	2	120690023	120690023	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	2	120690023	120690023	G	T	SNP	PTPN4	ENST00000263708	human	ensembl	74_37	+1	known	missense	c.1094	p.R365L	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	PTPN4	HGNC	ENSG00000088179	tier1	-	-	26	0	0.00	14	3	16.67
ENSG00000216102	0	genome.wustl.edu	37	19	9931205	9931205	+	RNA	SNP	T	T	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	19	9931205	9931205	T	A	SNP	ENSG00000216102	ENST00000401283	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AC008752.1	Clone_based_ensembl_gene	ENSG00000216102	tier1	-	-	23	0	0.00	54	18	24.00
NDUFB6	0	genome.wustl.edu	37	9	32570976	32570976	+	Nonsense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	9	32570976	32570976	G	T	SNP	NDUFB6	ENST00000379847	human	ensembl	74_37	-1	known	nonsense	c.255	p.Y85*	0.185	pfam_NADH_DH_b-subcmplx_su6	pfam_NADH_DH_b-subcmplx_su6	-	no_errors	NDUFB6	HGNC	ENSG00000165264	tier1	-	-	30	0	0.00	17	3	15.00
PCDH15	0	genome.wustl.edu	37	10	56129015	56129015	+	Silent	SNP	G	G	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	10	56129015	56129015	G	A	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	silent	c.339	p.S113	1.000	smart_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	tier1	-	-	59	0	0.00	23	16	41.03
CDK4	0	genome.wustl.edu	37	12	58145458	58145458	+	Missense_Mutation	SNP	C	C	G			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	12	58145458	58145458	C	G	SNP	CDK4	ENST00000257904	human	ensembl	74_37	-1	known	missense	c.43	p.G15R	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK4	HGNC	ENSG00000135446	tier1	-	-	27	0	0.00	9	5	35.71
FRG2B	0	genome.wustl.edu	37	10	135438753	135438753	+	Silent	SNP	G	G	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	10	135438753	135438753	G	A	SNP	FRG2B	ENST00000425520	human	ensembl	74_37	-1	known	silent	c.687	p.T229	0.707	NULL	NULL	-	no_errors	FRG2B	HGNC	ENSG00000225899	tier1	-	-	20	0	0.00	18	6	25.00
DAPK1	0	genome.wustl.edu	37	9	90113961	90113961	+	RNA	SNP	C	C	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	9	90113961	90113961	C	T	SNP	DAPK1	ENST00000472344	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.957	-	-	-	no_errors	DAPK1	HGNC	ENSG00000196730	tier1	-	-	43	0	0.00	44	4	8.33
FAM230B	0	genome.wustl.edu	37	22	21537809	21537809	+	RNA	SNP	A	A	G			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	22	21537809	21537809	A	G	SNP	FAM230B	ENST00000451257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM230B	HGNC	ENSG00000215498	tier1	-	-	23	0	0.00	40	11	21.57
MIR3689B	0	genome.wustl.edu	37	9	137742013	137742013	+	RNA	SNP	C	C	G			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	9	137742013	137742013	C	G	SNP	MIR3689B	ENST00000581772	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR3689B	HGNC	ENSG00000264163	tier1	rs71483239	-	41	0	0.00	25	7	21.88
ENSG00000216113	0	genome.wustl.edu	37	8	104863873	104863878	+	RNA	DEL	ACACAC	ACACAC	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	ACACAC	ACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	8	104863873	104863878	ACACAC	-	DEL	ENSG00000216113	ENST00000401294	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AP001572.1	Clone_based_ensembl_gene	ENSG00000216113	tier1			NA	NA	NA	NA	NA	NA
COG4	0	genome.wustl.edu	37	16	70546170	70546170	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	16	70546170	70546170	C	A	SNP	COG4	ENST00000323786	human	ensembl	74_37	-1	known	missense	c.710	p.R237I	1.000	pfam_COG_su4,smart_COG_su4	pfam_COG_su4,smart_COG_su4	-	no_errors	COG4	HGNC	ENSG00000103051	tier1	-	-	24	0	0.00	18	3	14.29
CPSF4L	0	genome.wustl.edu	37	17	71246420	71246420	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	17	71246420	71246420	G	T	SNP	CPSF4L	ENST00000397671	human	ensembl	74_37	-1	known	missense	c.454	p.Q152K	0.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	CPSF4L	HGNC	ENSG00000187959	tier1	-	-	45	0	0.00	34	4	10.53
RBMX2	0	genome.wustl.edu	37	X	129543263	129543263	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	X	129543263	129543263	G	T	SNP	RBMX2	ENST00000305536	human	ensembl	74_37	+1	known	missense	c.206	p.R69L	0.996	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX2	HGNC	ENSG00000134597	tier1	-	-	29	0	0.00	15	3	16.67
ENSG00000270726	0	genome.wustl.edu	37	X	155252987	155252988	+	RNA	INS	-	-	CAGCACCAC			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	X	155252987	155252988	-	CAGCACCAC	INS	ENSG00000270726	ENST00000285718	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.959:1.000	-	-	-	no_errors	AJ271736.10	Clone_based_vega_gene	ENSG00000270726	tier1			NA	NA	NA	NA	NA	NA
LINC01010	0	genome.wustl.edu	37	6	134824057	134824057	+	RNA	SNP	A	A	G			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	6	134824057	134824057	A	G	SNP	LINC01010	ENST00000431422	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	LINC01010	HGNC	ENSG00000236700	tier1	-	-	22	0	0.00	14	7	33.33
RGMB	0	genome.wustl.edu	37	5	98129279	98129279	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	5	98129279	98129279	C	A	SNP	RGMB	ENST00000308234	human	ensembl	74_37	+1	known	missense	c.1259	p.T420N	1.000	pfam_RGM_C	pfam_RGM_C,pfam_RGM_N	-	no_errors	RGMB	HGNC	ENSG00000174136	tier1	-	-	50	0	0.00	30	22	42.31
BDP1	0	genome.wustl.edu	37	5	70840897	70840897	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	5	70840897	70840897	G	T	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	missense	c.6595	p.V2199F	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	tier1	-	-	51	0	0.00	43	4	8.51
WNT2B	0	genome.wustl.edu	37	1	113057686	113057686	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	1	113057686	113057686	C	A	SNP	WNT2B	ENST00000369684	human	ensembl	74_37	+1	known	missense	c.373	p.H125N	1.000	pfam_Wnt,smart_Wnt,prints_Wnt2	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245	tier1	-	-	32	0	0.00	26	4	13.33
PIGC	0	genome.wustl.edu	37	1	172411323	172411323	+	Missense_Mutation	SNP	T	T	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	1	172411323	172411323	T	A	SNP	PIGC	ENST00000258324	human	ensembl	74_37	-1	known	missense	c.440	p.D147V	1.000	pfam_Plno_GlcNAc_GPI2,pirsf_Plno_GlcNAc_GPI2	pfam_Plno_GlcNAc_GPI2,pirsf_Plno_GlcNAc_GPI2	-	no_errors	PIGC	HGNC	ENSG00000135845	tier1	-	-	16	0	0.00	10	8	44.44
UNC13C	0	genome.wustl.edu	37	15	54305434	54305435	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	15	54305434	54305435	GA	-	DEL	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	frame_shift_del	c.334_335	p.D112fs	0.453:0.448	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	tier1			25	0	0.00	20	2	9.09
BUB1B	0	genome.wustl.edu	37	15	40504782	40504782	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	15	40504782	40504782	G	T	SNP	BUB1B	ENST00000412359	human	ensembl	74_37	+1	known	missense	c.2510	p.C837F	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970	tier1	-	-	62	0	0.00	38	4	9.52
OFD1	0	genome.wustl.edu	37	X	13757181	13757181	+	RNA	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	X	13757181	13757181	C	A	SNP	OFD1	ENST00000466534	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OFD1	HGNC	ENSG00000046651	tier1	-	-	54	0	0.00	44	4	8.33
C12orf55	0	genome.wustl.edu	37	12	97102550	97102550	+	Silent	SNP	C	C	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	12	97102550	97102550	C	T	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	silent	c.6693	p.N2231	0.000	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596	tier1	-	-	16	0	0.00	20	14	41.18
GMEB1	0	genome.wustl.edu	37	1	29041385	29041386	+	RNA	INS	-	-	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	1	29041385	29041386	-	A	INS	GMEB1	ENST00000480454	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.437:0.252	-	-	-	no_errors	GMEB1	HGNC	ENSG00000162419	tier1			21	0	0.00	24	3	11.11
CYP2G1P	0	genome.wustl.edu	37	19	41397318	41397318	+	RNA	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	19	41397318	41397318	C	A	SNP	CYP2G1P	ENST00000252909	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CYP2G1P	HGNC	ENSG00000130612	tier1	-	-	36	0	0.00	16	3	15.79
CLCN2	0	genome.wustl.edu	37	3	184071063	184071063	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	3	184071063	184071063	G	A	SNP	CLCN2	ENST00000265593	human	ensembl	74_37	-1	known	missense	c.2003	p.T668I	0.990	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl-channel-2	-	no_errors	CLCN2	HGNC	ENSG00000114859	tier1	-	-	60	0	0.00	15	35	34.31
P2RX2	0	genome.wustl.edu	37	12	133198160	133198160	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	12	133198160	133198160	G	A	SNP	P2RX2	ENST00000343948	human	ensembl	74_37	+1	known	missense	c.1096	p.G366R	0.000	NULL	pfam_P2X_purnocptor,prints_P2X2_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX2	HGNC	ENSG00000187848	tier1	rs199514327	-	43	0	0.00	23	14	37.84
OCIAD1	0	genome.wustl.edu	37	4	48835496	48835496	+	Missense_Mutation	SNP	G	G	C			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	4	48835496	48835496	G	C	SNP	OCIAD1	ENST00000264312	human	ensembl	74_37	+1	known	missense	c.137	p.R46T	1.000	pfam_OCIA	pfam_OCIA	-	no_errors	OCIAD1	HGNC	ENSG00000109180	tier1	-	-	45	0	0.00	39	26	40.00
SPTA1	0	genome.wustl.edu	37	1	158581004	158581004	+	RNA	SNP	T	T	C			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	1	158581004	158581004	T	C	SNP	SPTA1	ENST00000485680	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPTA1	HGNC	ENSG00000163554	tier1	-	-	32	0	0.00	17	10	37.04
ENTPD1-AS1	0	genome.wustl.edu	37	10	97515949	97515949	+	RNA	DEL	G	G	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	10	97515949	97515949	G	-	DEL	ENTPD1-AS1	ENST00000416301	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.906	-	-	-	no_errors	ENTPD1-AS1	HGNC	ENSG00000226688	tier1			24	0	0.00	16	2	11.11
ZNF729	0	genome.wustl.edu	37	19	22498491	22498491	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	19	22498491	22498491	C	T	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.2272	p.H758Y	0.700	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350	tier1	-	-	38	0	0.00	21	6	22.22
ETV5	0	genome.wustl.edu	37	3	185797767	185797767	+	Silent	SNP	G	G	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	3	185797767	185797767	G	A	SNP	ETV5	ENST00000537818	human	ensembl	74_37	-1	known	silent	c.615	p.A205	0.587	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV5	HGNC	ENSG00000244405	tier1	-	-	33	0	0.00	16	8	33.33
AKAP17A	0	genome.wustl.edu	37	X	1713021	1713021	+	Silent	SNP	C	C	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	X	1713021	1713021	C	T	SNP	AKAP17A	ENST00000313871	human	ensembl	74_37	+1	known	silent	c.666	p.R222	0.764	NULL	NULL	-	no_errors	AKAP17A	HGNC	ENSG00000197976	tier1	-	-	92	0	0.00	28	5	15.15
DARS	0	genome.wustl.edu	37	2	136742985	136742985	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	2	136742985	136742985	C	A	SNP	DARS	ENST00000264161	human	ensembl	74_37	-1	known	missense	c.54	p.M18I	1.000	NULL	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asp-tRNA_synthase	-	no_errors	DARS	HGNC	ENSG00000115866	tier1	-	-	111	0	0.00	71	42	37.17
SETX	0	genome.wustl.edu	37	9	135139194	135139196	+	RNA	DEL	TCT	TCT	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	9	135139194	135139196	TCT	-	DEL	SETX	ENST00000477049	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	SETX	HGNC	ENSG00000107290	tier1			40	0	0.00	22	3	12.00
FKBP15	0	genome.wustl.edu	37	9	115932891	115932891	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	9	115932891	115932891	G	T	SNP	FKBP15	ENST00000238256	human	ensembl	74_37	-1	known	missense	c.2677	p.Q893K	1.000	NULL	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321	tier1	-	-	37	0	0.00	30	4	11.76
PNKP	0	genome.wustl.edu	37	19	50370442	50370442	+	Frame_Shift_Del	DEL	G	G	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	19	50370442	50370442	G	-	DEL	PNKP	ENST00000322344	human	ensembl	74_37	-1	known	frame_shift_del	c.20	p.P7fs	0.000	superfamily_SMAD_FHA_domain,tigrfam_PNK_3Pase_met	pfam_PNK3P,superfamily_HAD-like_dom,superfamily_SMAD_FHA_domain,superfamily_P-loop_NTPase,tigrfam_PNK_3Pase_met,tigrfam_Polynucleotide_phosphatase,tigrfam_HAD-SF_hydro_IIIA	-	no_errors	PNKP	HGNC	ENSG00000039650	tier1			11	0	0.00	11	2	15.38
DISP2	0	genome.wustl.edu	37	15	40661057	40661057	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	15	40661057	40661057	C	T	SNP	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	missense	c.2744	p.P915L	0.991	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323	tier1	-	-	55	0	0.00	35	18	33.96
TPR	0	genome.wustl.edu	37	1	186314755	186314755	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	1	186314755	186314755	G	T	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.3170	p.A1057D	1.000	pfam_TPR_MLP1_2	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	tier1	-	-	33	0	0.00	34	4	10.53
VPS13A	0	genome.wustl.edu	37	9	79910710	79910710	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	9	79910710	79910710	C	A	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.3760	p.P1254T	0.998	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	tier1	-	-	27	0	0.00	40	4	9.09
NHS	0	genome.wustl.edu	37	X	17742527	17742527	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	X	17742527	17742527	C	T	SNP	NHS	ENST00000380060	human	ensembl	74_37	+1	known	missense	c.1154	p.P385L	1.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	tier1	-	-	32	0	0.00	25	5	16.67
MYCBP2	0	genome.wustl.edu	37	13	77750765	77750766	+	Splice_Site	INS	-	-	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	13	77750765	77750766	-	A	INS	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	splice_site_ins	c.5341-3_5341-2	e36-2	1.000:0.995	-	-	-	no_errors	MYCBP2	HGNC	ENSG00000005810	tier1			29	0	0.00	29	4	12.12
TEX14	0	genome.wustl.edu	37	17	56679184	56679184	+	Missense_Mutation	SNP	A	A	G			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	17	56679184	56679184	A	G	SNP	TEX14	ENST00000240361	human	ensembl	74_37	-1	known	missense	c.1679	p.I560T	0.077	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	TEX14	HGNC	ENSG00000121101	tier1	-	-	34	0	0.00	23	12	34.29
ENSG00000184566	0	genome.wustl.edu	37	11	33902977	33902977	+	Missense_Mutation	SNP	T	T	C			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	11	33902977	33902977	T	C	SNP	ENSG00000184566	ENST00000330381	human	ensembl	74_37	+1	known	missense	c.329	p.V110A	0.896	NULL	NULL	-	no_errors	AC132216.1	Clone_based_ensembl_gene	ENSG00000184566	tier1	-	-	19	0	0.00	9	7	43.75
ENSG00000254420	0	genome.wustl.edu	37	11	78154811	78154811	+	RNA	DEL	A	A	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	11	78154811	78154811	A	-	DEL	ENSG00000254420	ENST00000534168	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-452H21.1	Clone_based_vega_gene	ENSG00000254420	tier1			16	0	0.00	29	5	14.71
ENSG00000230615	0	genome.wustl.edu	37	1	44570004	44570004	+	RNA	SNP	T	T	G			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	1	44570004	44570004	T	G	SNP	ENSG00000230615	ENST00000434244	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP5-1198O20.4	Clone_based_vega_gene	ENSG00000230615	tier1	-	-	29	0	0.00	19	4	17.39
RCVRN	0	genome.wustl.edu	37	17	9801316	9801317	+	RNA	INS	-	-	GTGTGTGC			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	17	9801316	9801317	-	GTGTGTGC	INS	RCVRN	ENST00000570909	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RCVRN	HGNC	ENSG00000109047	tier1			NA	NA	NA	NA	NA	NA
TGM1	0	genome.wustl.edu	37	14	24727837	24727837	+	Missense_Mutation	SNP	A	A	C			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	14	24727837	24727837	A	C	SNP	TGM1	ENST00000206765	human	ensembl	74_37	-1	known	missense	c.1202	p.F401C	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	tier1	-	-	57	0	0.00	19	16	45.71
MYH15	0	genome.wustl.edu	37	3	108174661	108174661	+	Silent	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	3	108174661	108174661	C	A	SNP	MYH15	ENST00000273353	human	ensembl	74_37	-1	known	silent	c.2244	p.V748	0.632	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	tier1	-	-	47	0	0.00	25	3	10.71
DLX1	0	genome.wustl.edu	37	2	172952850	172952850	+	Silent	SNP	C	C	G			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	2	172952850	172952850	C	G	SNP	DLX1	ENST00000361725	human	ensembl	74_37	+1	known	silent	c.633	p.P211	0.001	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX1	HGNC	ENSG00000144355	tier1	-	-	47	0	0.00	23	9	28.12
CCT6A	0	genome.wustl.edu	37	7	56129482	56129482	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	7	56129482	56129482	G	T	SNP	CCT6A	ENST00000275603	human	ensembl	74_37	+1	known	missense	c.1390	p.V464F	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6A	HGNC	ENSG00000146731	tier1	-	-	42	0	0.00	49	7	12.50
CYP3A7	0	genome.wustl.edu	37	7	99314839	99314839	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	7	99314839	99314839	C	T	SNP	CYP3A7	ENST00000336374	human	ensembl	74_37	-1	known	missense	c.482	p.R161K	0.046	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A7	HGNC	ENSG00000160870	tier1	-	-	51	0	0.00	39	7	15.22
ANKRD27	0	genome.wustl.edu	37	19	33137460	33137460	+	Missense_Mutation	SNP	A	A	G			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	19	33137460	33137460	A	G	SNP	ANKRD27	ENST00000306065	human	ensembl	74_37	-1	known	missense	c.275	p.V92A	1.000	NULL	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	tier1	-	-	24	0	0.00	17	7	29.17
ENSG00000267317	0	genome.wustl.edu	37	19	1457894	1457895	+	RNA	INS	-	-	GGGGGGGGG			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	19	1457894	1457895	-	GGGGGGGGG	INS	ENSG00000267317	ENST00000588225	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CTB-25B13.12	Clone_based_vega_gene	ENSG00000267317	tier1			NA	NA	NA	NA	NA	NA
SHOX2	0	genome.wustl.edu	37	3	157820535	157820535	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	3	157820535	157820535	G	T	SNP	SHOX2	ENST00000389589	human	ensembl	74_37	-1	known	missense	c.559	p.H187N	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	SHOX2	HGNC	ENSG00000168779	tier1	-	-	64	0	0.00	40	4	9.09
TMPRSS13	0	genome.wustl.edu	37	11	117789313	117789327	+	In_Frame_Del	DEL	GGGCTGGAGATGCCT	GGGCTGGAGATGCCT	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	GGGCTGGAGATGCCT	GGGCTGGAGATGCCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	11	117789313	117789327	GGGCTGGAGATGCCT	-	DEL	TMPRSS13	ENST00000445164	human	ensembl	74_37	-1	known	in_frame_del	c.262_248	p.QASPA83in_frame_del	0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.027:0.023:0.018:0.154:0.212:0.233:0.001	pirsf_Peptidase_S1A_TMPRSS13	pirsf_Peptidase_S1A_TMPRSS13,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SRCR,pfscan_Peptidase_S1	-	no_errors	TMPRSS13	HGNC	ENSG00000137747	tier1			NA	NA	NA	NA	NA	NA
PBLD	0	genome.wustl.edu	37	10	70045108	70045108	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	10	70045108	70045108	G	A	SNP	PBLD	ENST00000309049	human	ensembl	74_37	-1	known	missense	c.751	p.H251Y	0.985	pfam_Phenazine_PhzF,pirsf_Phenazine_PhzF,tigrfam_Phenazine_PhzF	pfam_Phenazine_PhzF,pirsf_Phenazine_PhzF,tigrfam_Phenazine_PhzF	-	no_errors	PBLD	HGNC	ENSG00000108187	tier1	-	-	28	0	0.00	13	3	18.75
SUGP2	0	genome.wustl.edu	37	19	19136447	19136447	+	Missense_Mutation	SNP	G	G	C			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	19	19136447	19136447	G	C	SNP	SUGP2	ENST00000337018	human	ensembl	74_37	-1	known	missense	c.710	p.A237G	0.783	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP2	HGNC	ENSG00000064607	tier1	-	-	71	0	0.00	38	31	44.93
ALMS1	0	genome.wustl.edu	37	2	73613032	73613037	+	In_Frame_Del	DEL	GGAGGA	GGAGGA	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	GGAGGA	GGAGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	2	73613032	73613037	GGAGGA	-	DEL	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	in_frame_del	c.36_41	p.EE16in_frame_del	0.989:0.996:1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	tier1			NA	NA	NA	NA	NA	NA
LINC00200	0	genome.wustl.edu	37	10	1205801	1205801	+	RNA	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	10	1205801	1205801	C	A	SNP	LINC00200	ENST00000425630	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	LINC00200	HGNC	ENSG00000229205	tier1	rs12763661	-	35	0	0.00	17	5	22.73
ELMOD1	0	genome.wustl.edu	37	11	107524940	107524940	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	11	107524940	107524940	G	T	SNP	ELMOD1	ENST00000265840	human	ensembl	74_37	+1	known	missense	c.690	p.K230N	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_Engulfment_cell_motility_ELMO	-	no_errors	ELMOD1	HGNC	ENSG00000110675	tier1	-	-	38	0	0.00	18	3	14.29
CEPT1	0	genome.wustl.edu	37	1	111703576	111703576	+	RNA	DEL	A	A	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	1	111703576	111703576	A	-	DEL	CEPT1	ENST00000480324	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.207	-	-	-	no_errors	CEPT1	HGNC	ENSG00000134255	tier1			16	0	0.00	23	3	11.54
CXXC1	0	genome.wustl.edu	37	18	47812275	47812277	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	18	47812275	47812277	CTG	-	DEL	CXXC1	ENST00000412036	human	ensembl	74_37	-1	known	in_frame_del	c.483_481	p.Q161in_frame_del	1.000:1.000:1.000	pfscan_Znf_CXXC	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832	tier1			43	0	0.00	12	3	20.00
SIK2	0	genome.wustl.edu	37	11	111558730	111558730	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	11	111558730	111558730	C	A	SNP	SIK2	ENST00000304987	human	ensembl	74_37	+1	known	missense	c.322	p.L108I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK2	HGNC	ENSG00000170145	tier1	-	-	28	0	0.00	7	3	30.00
ENSG00000228980	0	genome.wustl.edu	37	3	109178739	109178740	+	RNA	INS	-	-	TTCCCTTGGTTTTCTTCATAAT			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	3	109178739	109178740	-	TTCCCTTGGTTTTCTTCATAAT	INS	ENSG00000228980	ENST00000497996	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009:0.018	-	-	-	no_errors	RP11-702L6.4	Clone_based_vega_gene	ENSG00000228980	tier1			NA	NA	NA	NA	NA	NA
ATRNL1	0	genome.wustl.edu	37	10	117486842	117486842	+	Nonsense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	10	117486842	117486842	G	T	SNP	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	nonsense	c.3880	p.E1294*	1.000	NULL	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518	tier1	-	-	41	0	0.00	18	3	14.29
CYP2S1	0	genome.wustl.edu	37	19	41712320	41712320	+	Frame_Shift_Del	DEL	T	T	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	19	41712320	41712320	T	-	DEL	CYP2S1	ENST00000310054	human	ensembl	74_37	+1	known	frame_shift_del	c.1442	p.F482fs	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600	tier1			24	0	0.00	19	2	9.52
DSPP	0	genome.wustl.edu	37	4	88537288	88537288	+	Silent	SNP	C	C	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	4	88537288	88537288	C	T	SNP	DSPP	ENST00000282478	human	ensembl	74_37	+1	known	silent	c.3474	p.D1158	0.959	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	tier1	-	-	44	0	0.00	35	5	12.50
MFSD4	0	genome.wustl.edu	37	1	205571627	205571627	+	RNA	SNP	C	C	A			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	1	205571627	205571627	C	A	SNP	MFSD4	ENST00000478555	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MFSD4	HGNC	ENSG00000174514	tier1	-	-	47	0	0.00	41	4	8.89
AIM2	0	genome.wustl.edu	37	1	159032487	159032487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	1	159032487	159032487	T	-	DEL	AIM2	ENST00000368130	human	ensembl	74_37	-1	known	frame_shift_del	c.1027	p.T343fs	0.001	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_NA-bd_OB-fold,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	AIM2	HGNC	ENSG00000163568	tier1			37	0	0.00	31	4	11.43
C10orf76	0	genome.wustl.edu	37	10	103783275	103783275	+	Missense_Mutation	SNP	C	C	G			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	10	103783275	103783275	C	G	SNP	C10orf76	ENST00000370033	human	ensembl	74_37	-1	known	missense	c.628	p.V210L	1.000	superfamily_ARM-type_fold	pfam_DUF1741,superfamily_ARM-type_fold	-	no_errors	C10orf76	HGNC	ENSG00000120029	tier1	-	-	28	0	0.00	9	11	55.00
REPS1	0	genome.wustl.edu	37	6	139265676	139265676	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	6	139265676	139265676	G	T	SNP	REPS1	ENST00000450536	human	ensembl	74_37	-1	known	missense	c.712	p.P238T	1.000	NULL	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	REPS1	HGNC	ENSG00000135597	tier1	-	-	34	0	0.00	15	14	48.28
OTUD4	0	genome.wustl.edu	37	4	146059742	146059742	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	4	146059742	146059742	G	T	SNP	OTUD4	ENST00000447906	human	ensembl	74_37	-1	known	missense	c.2185	p.L729M	0.980	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	tier1	-	-	46	0	0.00	26	4	13.33
GGT6	0	genome.wustl.edu	37	17	4461459	4461459	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	17	4461459	4461459	G	T	SNP	GGT6	ENST00000574154	human	ensembl	74_37	-1	known	missense	c.1333	p.Q445K	0.019	NULL	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT6	HGNC	ENSG00000167741	tier1	-	-	46	0	0.00	8	3	27.27
ENSG00000216154	0	genome.wustl.edu	37	4	123928724	123928751	+	RNA	DEL	TGTGTGTGTGTGTGTGTGTGTGTGTGTG	TGTGTGTGTGTGTGTGTGTGTGTGTGTG	-			TCGA-MB-A5Y8-01A-11D-A29N-09	TCGA-MB-A5Y8-10A-01D-A29N-09	TGTGTGTGTGTGTGTGTGTGTGTGTGTG	TGTGTGTGTGTGTGTGTGTGTGTGTGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef3ebd13-0657-488a-b94a-c92dcb425306	2acedeb3-0a0d-4d72-b763-176d68e55d0e	4	123928724	123928751	TGTGTGTGTGTGTGTGTGTGTGTGTGTG	-	DEL	ENSG00000216154	ENST00000401335	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.008:0.004:0.004:0.003:0.003:0.003:0.005:0.006:0.007:0.007:0.007:0.006:0.005:0.003:0.004:0.003:0.005:0.006:0.012:0.017:0.021:0.026:0.029:0.032:0.035:0.037:0.038:0.039	-	-	-	no_errors	AC109357.1	Clone_based_ensembl_gene	ENSG00000216154	tier1			NA	NA	NA	NA	NA	NA
