Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ENSG00000216020	0	genome.wustl.edu	37	3	191693810	191693812	+	RNA	DEL	CCA	CCA	-			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	3	191693810	191693812	CCA	-	DEL	ENSG00000216020	ENST00000401201	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.001:0.001:0.001	-	-	-	no_errors	AC026320.1	Clone_based_ensembl_gene	ENSG00000216020	tier1			10	0	0.00	14	7	33.33
MX1	0	genome.wustl.edu	37	21	42804053	42804053	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	21	42804053	42804053	C	T	SNP	MX1	ENST00000398598	human	ensembl	74_37	+1	known	missense	c.56	p.P19L	0.000	NULL	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_GED,prints_Dynamin_SF	-	no_errors	MX1	HGNC	ENSG00000157601	tier1	-	-	41	0	0.00	64	28	30.43
KRTAP10-9	0	genome.wustl.edu	37	21	46048196	46048197	+	RNA	INS	-	-	CGCTGGT			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	21	46048196	46048197	-	CGCTGGT	INS	KRTAP10-9	ENST00000484861	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837	tier1			NA	NA	NA	NA	NA	NA
SH2D5	0	genome.wustl.edu	37	1	21053559	21053559	+	Nonsense_Mutation	SNP	G	G	A			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	1	21053559	21053559	G	A	SNP	SH2D5	ENST00000444387	human	ensembl	74_37	-1	known	nonsense	c.178	p.R60*	0.990	smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH2	-	no_errors	SH2D5	HGNC	ENSG00000189410	tier1	-	-	60	0	0.00	57	44	43.56
TMX2	0	genome.wustl.edu	37	11	57505881	57505881	+	Nonsense_Mutation	SNP	C	C	G			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	11	57505881	57505881	C	G	SNP	TMX2	ENST00000278422	human	ensembl	74_37	+1	known	nonsense	c.420	p.Y140*	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX2	HGNC	ENSG00000213593	tier1	-	-	66	0	0.00	49	31	38.75
PLEKHB2	0	genome.wustl.edu	37	2	131890578	131890578	+	Missense_Mutation	SNP	T	T	C			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	2	131890578	131890578	T	C	SNP	PLEKHB2	ENST00000409158	human	ensembl	74_37	+1	novel	missense	c.437	p.L146P	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB2	HGNC	ENSG00000115762	tier1	-	-	31	0	0.00	18	14	43.75
ADAM21P1	0	genome.wustl.edu	37	14	70714300	70714300	+	RNA	SNP	A	A	G			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	14	70714300	70714300	A	G	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812	tier1	rs112607032	-	25	0	0.00	31	7	18.42
C12orf55	0	genome.wustl.edu	37	12	96894645	96894645	+	Silent	SNP	C	C	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	12	96894645	96894645	C	T	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	silent	c.351	p.Y117	0.786	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596	tier1	-	-	43	0	0.00	28	31	52.54
WDR18	0	genome.wustl.edu	37	19	985972	985972	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	19	985972	985972	G	T	SNP	WDR18	ENST00000251289	human	ensembl	74_37	+1	known	missense	c.318	p.W106C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR18	HGNC	ENSG00000065268	tier1	-	-	30	0	0.00	38	4	9.52
KCNK17	0	genome.wustl.edu	37	6	39267321	39267321	+	Missense_Mutation	SNP	G	G	C			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	6	39267321	39267321	G	C	SNP	KCNK17	ENST00000373231	human	ensembl	74_37	-1	known	missense	c.881	p.P294R	0.000	pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK17	HGNC	ENSG00000124780	tier1	-	-	68	0	0.00	31	30	49.18
ZCWPW1	0	genome.wustl.edu	37	7	100014754	100014754	+	Silent	SNP	T	T	C			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	7	100014754	100014754	T	C	SNP	ZCWPW1	ENST00000398027	human	ensembl	74_37	-1	known	silent	c.414	p.V138	0.000	NULL	pfam_Znf_CW,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487	tier1	-	-	38	0	0.00	25	14	35.90
NCKAP5	0	genome.wustl.edu	37	2	133554264	133554264	+	Silent	SNP	A	A	G			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	2	133554264	133554264	A	G	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	silent	c.846	p.D282	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	tier1	-	-	29	0	0.00	28	8	22.22
ENSG00000221279	0	genome.wustl.edu	37	7	110568408	110568413	+	RNA	DEL	CACACA	CACACA	-			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	CACACA	CACACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	7	110568408	110568413	CACACA	-	DEL	ENSG00000221279	ENST00000408352	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.003:0.009:0.052:0.060:0.063	-	-	-	no_errors	AC005161.1	Clone_based_ensembl_gene	ENSG00000221279	tier1			NA	NA	NA	NA	NA	NA
DMXL2	0	genome.wustl.edu	37	15	51828631	51828631	+	Silent	SNP	C	C	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	15	51828631	51828631	C	T	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	silent	c.2046	p.Q682	0.001	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	tier1	rs150462519	-	29	0	0.00	27	10	27.03
TMEM132E	0	genome.wustl.edu	37	17	32955593	32955593	+	Missense_Mutation	SNP	A	A	G			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	17	32955593	32955593	A	G	SNP	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	missense	c.740	p.K247R	1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291	tier1	-	-	55	0	0.00	33	22	40.00
LRRC16A	0	genome.wustl.edu	37	6	25452328	25452328	+	RNA	SNP	G	G	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	6	25452328	25452328	G	T	SNP	LRRC16A	ENST00000461945	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LRRC16A	HGNC	ENSG00000079691	tier1	-	-	39	0	0.00	35	4	10.26
GABRA5	0	genome.wustl.edu	37	15	27193366	27193366	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	15	27193366	27193366	G	A	SNP	GABRA5	ENST00000335625	human	ensembl	74_37	+1	known	missense	c.1375	p.A459T	0.001	prints_GABBAa5_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297	tier1	-	-	27	0	0.00	33	4	10.81
CATSPER2P1	0	genome.wustl.edu	37	15	44019275	44019275	+	RNA	SNP	C	C	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	15	44019275	44019275	C	T	SNP	CATSPER2P1	ENST00000446479	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.005	-	-	-	no_errors	CATSPER2P1	HGNC	ENSG00000205771	tier1	-	-	28	0	0.00	13	13	50.00
GOLGA2P5	0	genome.wustl.edu	37	12	100562920	100562921	+	RNA	INS	-	-	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	12	100562920	100562921	-	T	INS	GOLGA2P5	ENST00000421840	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GOLGA2B	Clone_based_vega_gene	ENSG00000238105	tier1			22	0	0.00	24	4	14.29
TBC1D9B	0	genome.wustl.edu	37	5	179290867	179290867	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	5	179290867	179290867	C	T	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	missense	c.3334	p.G1112S	0.036	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	tier1	-	-	30	0	0.00	35	19	35.19
RAD54L2	0	genome.wustl.edu	37	3	51680404	51680404	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	3	51680404	51680404	C	T	SNP	RAD54L2	ENST00000409535	human	ensembl	74_37	+1	known	missense	c.2933	p.T978I	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080	tier1	-	-	19	0	0.00	3	8	72.73
ECE2	0	genome.wustl.edu	37	3	184009904	184009904	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	3	184009904	184009904	C	T	SNP	ECE2	ENST00000402825	human	ensembl	74_37	+1	known	missense	c.2530	p.P844S	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194	tier1	-	-	41	0	0.00	31	20	39.22
PABPC1L	0	genome.wustl.edu	37	20	43547557	43547557	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	20	43547557	43547557	C	T	SNP	PABPC1L	ENST00000217073	human	ensembl	74_37	+1	known	missense	c.514	p.H172Y	1.000	pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104	tier1	-	-	19	0	0.00	24	5	17.24
AOX2P	0	genome.wustl.edu	37	2	201619758	201619759	+	RNA	DEL	TG	TG	-			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	2	201619758	201619759	TG	-	DEL	AOX2P	ENST00000472376	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AOX2P	HGNC	ENSG00000243478	tier1			11	0	0.00	14	4	22.22
ENSG00000272167	0	genome.wustl.edu	37	1	214203529	214203529	+	RNA	DEL	A	A	-			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	1	214203529	214203529	A	-	DEL	ENSG00000272167	ENST00000607258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RP11-53A1.2	Clone_based_vega_gene	ENSG00000272167	tier1			38	0	0.00	28	3	9.68
IL5RA	0	genome.wustl.edu	37	3	3111914	3111914	+	Missense_Mutation	SNP	A	A	C			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	3	3111914	3111914	A	C	SNP	IL5RA	ENST00000256452	human	ensembl	74_37	-1	known	missense	c.1258	p.F420V	1.000	NULL	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	IL5RA	HGNC	ENSG00000091181	tier1	-	-	48	0	0.00	23	7	23.33
LOC101928703	0	genome.wustl.edu	37	4	183064420	183064420	+	RNA	SNP	A	A	G			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	4	183064420	183064420	A	G	SNP	LOC101928703	ENST00000315302	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.043	-	-	-	no_errors	AC108142.1	Clone_based_vega_gene	ENSG00000177822	tier1	-	-	18	0	0.00	15	8	34.78
PRB3	0	genome.wustl.edu	37	12	11421026	11421085	+	Splice_Site	DEL	GAGGTGGGGTACGTTGGGGCTGGTTTCCTCCTTGTGGGCGTCGTCCTTCTGGCTTTCCTG	GAGGTGGGGTACGTTGGGGCTGGTTTCCTCCTTGTGGGCGTCGTCCTTCTGGCTTTCCTG	-			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	GAGGTGGGGTACGTTGGGGCTGGTTTCCTCCTTGTGGGCGTCGTCCTTCTGGCTTTCCTG	GAGGTGGGGTACGTTGGGGCTGGTTTCCTCCTTGTGGGCGTCGTCCTTCTGGCTTTCCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	12	11421026	11421085	GAGGTGGGGTACGTTGGGGCTGGTTTCCTCCTTGTGGGCGTCGTCCTTCTGGCTTTCCTG	-	DEL	PRB3	ENST00000381842	human	ensembl	74_37	-1	known	splice_site_del	c.101-3_101-1	e3-1	0.002:0.002:0.003:0.006:0.007:0.007:0.005:0.005:0.004:0.001:0.001:0.001:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.002:0.002:0.000:0.000:0.000:0.000:0.000:0.002:0.003:0.002:0.001:0.001:0.002:0.011:0.015:0.020:0.021:0.019:0.015:0.008:0.005:0.005:0.000:0.000:0.002:0.005:0.010:0.051	-	-	-	no_errors	PRB3	HGNC	ENSG00000197870	tier1			NA	NA	NA	NA	NA	NA
SHANK2	0	genome.wustl.edu	37	11	70332818	70332818	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	11	70332818	70332818	C	T	SNP	SHANK2	ENST00000338508	human	ensembl	74_37	-1	known	missense	c.3583	p.G1195S	0.002	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	tier1	-	-	47	0	0.00	29	23	44.23
GRID2	0	genome.wustl.edu	37	4	94006200	94006200	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	4	94006200	94006200	C	T	SNP	GRID2	ENST00000282020	human	ensembl	74_37	+1	known	missense	c.299	p.T100M	0.994	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208	tier1	-	-	33	0	0.00	16	15	48.39
PKP4	0	genome.wustl.edu	37	2	159536984	159536984	+	Missense_Mutation	SNP	A	A	G			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	2	159536984	159536984	A	G	SNP	PKP4	ENST00000389759	human	ensembl	74_37	+1	known	missense	c.3374	p.N1125S	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	tier1	-	-	32	0	0.00	50	5	8.93
ARHGAP44	0	genome.wustl.edu	37	17	12883386	12883386	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	17	12883386	12883386	G	T	SNP	ARHGAP44	ENST00000379672	human	ensembl	74_37	+1	known	missense	c.1775	p.S592I	1.000	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP44	HGNC	ENSG00000006740	tier1	-	-	28	0	0.00	16	3	15.79
DCHS2	0	genome.wustl.edu	37	4	155156309	155156309	+	Silent	SNP	C	C	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	4	155156309	155156309	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	silent	c.8130	p.G2710	0.041	NULL	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	tier1	-	-	39	0	0.00	29	17	36.96
OR10J5	0	genome.wustl.edu	37	1	159504982	159504982	+	Silent	SNP	A	A	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	1	159504982	159504982	A	T	SNP	OR10J5	ENST00000334857	human	ensembl	74_37	-1	known	silent	c.816	p.V272	0.155	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10J5	HGNC	ENSG00000184155	tier1	-	-	57	0	0.00	48	27	35.53
CKS1B	0	genome.wustl.edu	37	1	154951478	154951478	+	RNA	SNP	G	G	C			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	1	154951478	154951478	G	C	SNP	CKS1B	ENST00000471245	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.043	-	-	-	no_errors	CKS1B	HGNC	ENSG00000173207	tier1	-	-	29	0	0.00	21	13	38.24
DOCK10	0	genome.wustl.edu	37	2	225739435	225739435	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	2	225739435	225739435	G	A	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.965	p.T322M	0.843	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	tier1	rs147869852	GMAF=0.0005	71	0	0.00	86	24	21.82
ARHGAP33	0	genome.wustl.edu	37	19	36275201	36275201	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	19	36275201	36275201	G	A	SNP	ARHGAP33	ENST00000007510	human	ensembl	74_37	+1	known	missense	c.1549	p.A517T	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777	tier1	-	-	57	0	0.00	53	30	36.14
TSPEAR	0	genome.wustl.edu	37	21	45945565	45945565	+	Missense_Mutation	SNP	T	T	A			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	21	45945565	45945565	T	A	SNP	TSPEAR	ENST00000323084	human	ensembl	74_37	-1	known	missense	c.1307	p.H436L	1.000	pfam_EPTP,pfscan_EAR	pfam_EPTP,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_EAR	-	no_errors	TSPEAR	HGNC	ENSG00000175894	tier1	-	-	43	0	0.00	27	5	15.62
WASH6P	0	genome.wustl.edu	37	X	155253590	155253590	+	RNA	SNP	C	C	T			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	X	155253590	155253590	C	T	SNP	WASH6P	ENST00000461007	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	WASH6P	HGNC	ENSG00000182484	tier1	-	-	97	0	0.00	77	12	13.48
GOLGA2P5	0	genome.wustl.edu	37	12	100555585	100555586	+	RNA	INS	-	-	GGTACC			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	12	100555585	100555586	-	GGTACC	INS	GOLGA2P5	ENST00000397112	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.044:0.066	-	-	-	no_errors	GOLGA2B	Clone_based_vega_gene	ENSG00000238105	tier1			NA	NA	NA	NA	NA	NA
SLC6A8	0	genome.wustl.edu	37	X	152960301	152960302	+	In_Frame_Ins	INS	-	-	CCTCCTGGGCTGCCT			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	X	152960301	152960302	-	CCTCCTGGGCTGCCT	INS	SLC6A8	ENST00000253122	human	ensembl	74_37	+1	known	in_frame_ins	c.1724_1725	p.579in_frame_insCLLLG	0.372:0.372	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_creatine	-	no_errors	SLC6A8	HGNC	ENSG00000130821	tier1			NA	NA	NA	NA	NA	NA
NEFH	0	genome.wustl.edu	37	22	29885599	29885604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	AGGAAG	AGGAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	22	29885599	29885604	AGGAAG	-	DEL	NEFH	ENST00000310624	human	ensembl	74_37	+1	known	in_frame_del	c.1970_1975	p.EE658in_frame_del	0.992:1.000:0.998:0.968:0.000:0.171	NULL	pfam_IF,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	tier1			NA	NA	NA	NA	NA	NA
PLOD2	0	genome.wustl.edu	37	3	145828222	145828222	+	Missense_Mutation	SNP	A	A	G			TCGA-MB-A5YA-01A-11D-A29N-09	TCGA-MB-A5YA-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8fdc2ffd-b882-4425-bfc3-43670326b763	d78c8041-1687-4dfc-b60b-b976c8fb311f	3	145828222	145828222	A	G	SNP	PLOD2	ENST00000282903	human	ensembl	74_37	-1	known	missense	c.352	p.F118L	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD2	HGNC	ENSG00000152952	tier1	-	-	34	0	0.00	28	16	36.36
