Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
DNA2	0	genome.wustl.edu	37	10	70176522	70176522	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	10	70176522	70176522	G	T	SNP	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	missense	c.3316	p.L1106I	0.734	NULL	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346	tier1	-	-	57	0	0.00	31	4	11.43
GGCX	0	genome.wustl.edu	37	2	85781577	85781578	+	RNA	INS	-	-	TTGTTGTTG			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	2	85781577	85781578	-	TTGTTGTTG	INS	GGCX	ENST00000473665	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009:0.012	-	-	-	no_errors	GGCX	HGNC	ENSG00000115486	tier1			NA	NA	NA	NA	NA	NA
FAM92B	0	genome.wustl.edu	37	16	85132846	85132846	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	16	85132846	85132846	G	A	SNP	FAM92B	ENST00000539556	human	ensembl	74_37	-1	known	missense	c.860	p.A287V	0.000	NULL	pfam_FAM92	-	no_errors	FAM92B	HGNC	ENSG00000153789	tier1	-	-	54	0	0.00	34	4	10.53
HUWE1	0	genome.wustl.edu	37	X	53589091	53589093	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	X	53589091	53589093	TCC	-	DEL	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	in_frame_del	c.7319_7317	p.E2440in_frame_del	1.000:1.000:1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	tier1			27	0	0.00	20	3	13.04
SLC31A2	0	genome.wustl.edu	37	9	115923976	115923976	+	Silent	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	9	115923976	115923976	C	T	SNP	SLC31A2	ENST00000259392	human	ensembl	74_37	+1	known	silent	c.261	p.H87	0.980	pfam_Cop_transporter	pfam_Cop_transporter	-	no_errors	SLC31A2	HGNC	ENSG00000136867	tier1	-	-	45	0	0.00	41	4	8.89
MYADML	0	genome.wustl.edu	37	2	33952223	33952223	+	RNA	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	2	33952223	33952223	G	T	SNP	MYADML	ENST00000474610	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MYADML	HGNC	ENSG00000239649	tier1	-	-	43	0	0.00	33	8	19.51
LOC388882	0	genome.wustl.edu	37	22	23825282	23825282	+	RNA	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	22	23825282	23825282	C	T	SNP	LOC388882	ENST00000320372	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AP000345.1	Clone_based_vega_gene	ENSG00000178248	tier1	-	-	313	1	0.32	249	70	21.94
COX7A2L	0	genome.wustl.edu	37	2	42578275	42578275	+	RNA	DEL	A	A	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	2	42578275	42578275	A	-	DEL	COX7A2L	ENST00000482463	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COX7A2L	HGNC	ENSG00000115944	tier1			39	0	0.00	31	5	13.89
F2	0	genome.wustl.edu	37	11	46744808	46744808	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	11	46744808	46744808	G	T	SNP	F2	ENST00000311907	human	ensembl	74_37	+1	known	missense	c.395	p.W132L	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pirsf_Prothrombin/thrombin,pfscan_Kringle	pfam_Peptidase_S1,pfam_Kringle,pfam_Thrombin_light_chain,pfam_GLA_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,superfamily_GLA_domain,smart_GLA_domain,smart_Kringle,smart_Peptidase_S1,pirsf_Prothrombin/thrombin,pfscan_GLA_domain,pfscan_Kringle,pfscan_Peptidase_S1,prints_Prothrombin/thrombin,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F2	HGNC	ENSG00000180210	tier1	-	-	50	0	0.00	24	4	14.29
MROH7-TTC4	0	genome.wustl.edu	37	1	55118966	55118966	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	55118966	55118966	C	T	SNP	MROH7-TTC4	ENST00000414150	human	ensembl	74_37	+1	known	missense	c.367	p.P123S	0.459	NULL	superfamily_ARM-type_fold	-	no_errors	MROH7-TTC4	HGNC	ENSG00000271723	tier1	-	-	44	0	0.00	46	4	8.00
DDX11L9	0	genome.wustl.edu	37	15	102516816	102516816	+	RNA	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	15	102516816	102516816	G	T	SNP	DDX11L9	ENST00000559159	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DDX11L9	HGNC	ENSG00000248472	tier1	-	-	13	0	0.00	12	5	29.41
ANKRD33B	0	genome.wustl.edu	37	5	10638141	10638141	+	Silent	SNP	G	G	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	5	10638141	10638141	G	A	SNP	ANKRD33B	ENST00000296657	human	ensembl	74_37	+1	novel	silent	c.498	p.G166	0.835	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD33B	HGNC	ENSG00000164236	tier1	-	-	41	0	0.00	24	4	14.29
ABCC2	0	genome.wustl.edu	37	10	101578579	101578579	+	Silent	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	10	101578579	101578579	G	T	SNP	ABCC2	ENST00000370449	human	ensembl	74_37	+1	known	silent	c.2304	p.R768	0.585	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839	tier1	-	-	69	0	0.00	46	4	8.00
NFAT5	0	genome.wustl.edu	37	16	69726420	69726422	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	16	69726420	69726422	CAG	-	DEL	NFAT5	ENST00000432919	human	ensembl	74_37	+1	known	in_frame_del	c.2692_2694	p.Q901in_frame_del	0.966:0.976:0.988	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	tier1			26	0	0.00	20	3	13.04
MASP1	0	genome.wustl.edu	37	3	186947606	186947606	+	Silent	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	3	186947606	186947606	G	T	SNP	MASP1	ENST00000337774	human	ensembl	74_37	-1	known	silent	c.1383	p.P461	0.961	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MASP1	HGNC	ENSG00000127241	tier1	-	-	68	0	0.00	32	3	8.57
CEP350	0	genome.wustl.edu	37	1	179966060	179966060	+	Silent	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	179966060	179966060	C	T	SNP	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	silent	c.768	p.D256	0.938	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	tier1	-	-	39	0	0.00	63	10	13.70
SH3BP1	0	genome.wustl.edu	37	22	38046665	38046670	+	In_Frame_Del	DEL	CCGGCT	CCGGCT	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	CCGGCT	CCGGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	22	38046665	38046670	CCGGCT	-	DEL	SH3BP1	ENST00000357436	human	ensembl	74_37	+1	known	in_frame_del	c.1531_1536	p.AP514in_frame_del	0.131:0.094:0.000:0.000:0.001:0.005	NULL	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092	tier1			NA	NA	NA	NA	NA	NA
CFHR4	0	genome.wustl.edu	37	1	196876546	196876546	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	196876546	196876546	G	T	SNP	CFHR4	ENST00000367416	human	ensembl	74_37	+1	known	missense	c.714	p.Q238H	0.006	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365	tier1	-	-	83	0	0.00	39	4	9.30
NME1-NME2	0	genome.wustl.edu	37	17	49245607	49245607	+	Missense_Mutation	SNP	C	C	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	49245607	49245607	C	G	SNP	NME1-NME2	ENST00000608447	human	ensembl	74_37	+1	known	missense	c.551	p.S184C	0.999	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	-	no_errors	NME1-NME2	HGNC	ENSG00000243678	tier1	-	-	66	0	0.00	93	15	13.89
C1orf52	0	genome.wustl.edu	37	1	85725291	85725291	+	Missense_Mutation	SNP	A	A	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	85725291	85725291	A	C	SNP	C1orf52	ENST00000471115	human	ensembl	74_37	-1	known	missense	c.26	p.L9R	0.996	NULL	NULL	-	no_errors	C1orf52	HGNC	ENSG00000162642	tier1	-	-	66	0	0.00	54	13	19.40
ENSG00000228395	0	genome.wustl.edu	37	9	131303467	131303467	+	RNA	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	9	131303467	131303467	C	T	SNP	ENSG00000228395	ENST00000426704	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-216B9.6	Clone_based_vega_gene	ENSG00000228395	tier1	-	-	45	0	0.00	32	4	11.11
RASGEF1C	0	genome.wustl.edu	37	5	179528441	179528441	+	RNA	SNP	G	G	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	5	179528441	179528441	G	A	SNP	RASGEF1C	ENST00000519456	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.918	-	-	-	no_errors	RASGEF1C	HGNC	ENSG00000146090	tier1	-	-	57	0	0.00	23	8	25.00
ABCA6	0	genome.wustl.edu	37	17	67079036	67079036	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	67079036	67079036	G	T	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	missense	c.4594	p.P1532T	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	tier1	-	-	59	0	0.00	37	4	9.76
CCNT2	0	genome.wustl.edu	37	2	135694493	135694493	+	Missense_Mutation	SNP	A	A	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	2	135694493	135694493	A	G	SNP	CCNT2	ENST00000264157	human	ensembl	74_37	+1	known	missense	c.323	p.H108R	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT2	HGNC	ENSG00000082258	tier1	-	-	21	0	0.00	32	18	36.00
OBSCN	0	genome.wustl.edu	37	1	228401199	228401199	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	228401199	228401199	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.1046	p.S349L	0.992	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	70	0	0.00	34	20	37.04
ANKRA2	0	genome.wustl.edu	37	5	72858439	72858439	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	5	72858439	72858439	C	T	SNP	ANKRA2	ENST00000296785	human	ensembl	74_37	-1	known	missense	c.268	p.V90M	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRA2	HGNC	ENSG00000164331	tier1	-	-	68	0	0.00	62	22	26.19
CLDN1	0	genome.wustl.edu	37	3	190030660	190030660	+	Splice_Site	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	3	190030660	190030660	C	T	SNP	CLDN1	ENST00000295522	human	ensembl	74_37	-1	known	splice_site	c.388+1	e2+1	1.000	-	-	-	no_errors	CLDN1	HGNC	ENSG00000163347	tier1	-	-	43	0	0.00	28	4	12.50
SLC16A5	0	genome.wustl.edu	37	17	73094219	73094219	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	73094219	73094219	G	A	SNP	SLC16A5	ENST00000329783	human	ensembl	74_37	+1	known	missense	c.286	p.A96T	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A5	HGNC	ENSG00000170190	tier1	-	-	33	0	0.00	45	4	8.16
PPP1R3A	0	genome.wustl.edu	37	7	113519017	113519017	+	Silent	SNP	G	G	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	7	113519017	113519017	G	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	silent	c.2130	p.C710	0.031	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	tier1	-	-	34	0	0.00	30	4	11.76
ANKRD36BP1	0	genome.wustl.edu	37	1	168215941	168215941	+	RNA	SNP	G	G	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	168215941	168215941	G	C	SNP	ANKRD36BP1	ENST00000358576	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	ANKRD36BP1	HGNC	ENSG00000214262	tier1	-	-	68	0	0.00	103	20	16.26
ZIC5	0	genome.wustl.edu	37	13	100622668	100622670	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	13	100622668	100622670	GGC	-	DEL	ZIC5	ENST00000267294	human	ensembl	74_37	-1	known	in_frame_del	c.1262_1260	p.P424in_frame_del	0.885:0.709:0.221	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC5	HGNC	ENSG00000139800	tier1			24	0	0.00	16	5	23.81
CUL4B	0	genome.wustl.edu	37	X	119670866	119670866	+	Silent	SNP	C	C	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	X	119670866	119670866	C	G	SNP	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	silent	c.2016	p.P672	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	tier1	-	-	31	0	0.00	6	32	84.21
NFE2L2	0	genome.wustl.edu	37	2	178095856	178095856	+	Missense_Mutation	SNP	T	T	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	2	178095856	178095856	T	C	SNP	NFE2L2	ENST00000397062	human	ensembl	74_37	-1	known	missense	c.1475	p.E492G	1.000	superfamily_TF_DNA-bd	pfam_bZIP,superfamily_TF_DNA-bd,superfamily_Serpin_dom,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L2	HGNC	ENSG00000116044	tier1	-	-	19	0	0.00	12	3	20.00
EPHX1	0	genome.wustl.edu	37	1	226026987	226026987	+	Missense_Mutation	SNP	A	A	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	226026987	226026987	A	G	SNP	EPHX1	ENST00000272167	human	ensembl	74_37	+1	known	missense	c.662	p.Y221C	0.992	pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase	pfam_Epoxide_hydro_N,pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase,prints_Epox_hydrolase-like	-	no_errors	EPHX1	HGNC	ENSG00000143819	tier1	-	-	69	0	0.00	36	19	34.55
PRKDC	0	genome.wustl.edu	37	8	48739410	48739410	+	Nonsense_Mutation	SNP	G	G	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	8	48739410	48739410	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	nonsense	c.8587	p.Q2863*	0.998	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	tier1	-	-	96	0	0.00	23	6	20.69
SOX4	0	genome.wustl.edu	37	6	21595992	21595992	+	Frame_Shift_Del	DEL	C	C	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	6	21595992	21595992	C	-	DEL	SOX4	ENST00000244745	human	ensembl	74_37	+1	known	frame_shift_del	c.1227	p.S411fs	1.000	pirsf_SOX-12/11/4a	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	-	no_errors	SOX4	HGNC	ENSG00000124766	tier1			95	0	0.00	50	51	50.50
ADAMTS9	0	genome.wustl.edu	37	3	64582660	64582660	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	3	64582660	64582660	C	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	missense	c.4025	p.S1342N	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	tier1	-	-	45	0	0.00	45	4	8.16
HDAC5	0	genome.wustl.edu	37	17	42164842	42164842	+	Nonsense_Mutation	SNP	C	C	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	42164842	42164842	C	A	SNP	HDAC5	ENST00000225983	human	ensembl	74_37	-1	known	nonsense	c.1825	p.E609*	0.594	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840	tier1	-	-	26	0	0.00	36	4	10.00
ENSG00000265002	0	genome.wustl.edu	37	15	20563423	20563423	+	RNA	DEL	C	C	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	15	20563423	20563423	C	-	DEL	ENSG00000265002	ENST00000581090	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.102	-	-	-	no_errors	AC026495.1	Clone_based_ensembl_gene	ENSG00000265002	tier1			44	0	0.00	35	6	14.63
A2MP1	0	genome.wustl.edu	37	12	9416382	9416382	+	RNA	SNP	T	T	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	12	9416382	9416382	T	C	SNP	A2MP1	ENST00000544183	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	A2MP1	HGNC	ENSG00000256069	tier1	-	-	80	0	0.00	52	14	21.21
MYH3	0	genome.wustl.edu	37	17	10541189	10541189	+	Nonsense_Mutation	SNP	C	C	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	10541189	10541189	C	A	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	nonsense	c.3793	p.E1265*	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063	tier1	-	-	59	0	0.00	11	7	38.89
NALCN	0	genome.wustl.edu	37	13	101763479	101763479	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	13	101763479	101763479	C	T	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.2291	p.R764H	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	tier1	-	-	45	0	0.00	10	34	77.27
KMT2E	0	genome.wustl.edu	37	7	104747062	104747062	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	7	104747062	104747062	C	A	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	missense	c.2690	p.T897K	0.999	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483	tier1	-	-	39	0	0.00	34	4	10.53
SCUBE1	0	genome.wustl.edu	37	22	43600071	43600071	+	Missense_Mutation	SNP	T	T	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	22	43600071	43600071	T	C	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	missense	c.2899	p.M967V	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307	tier1	-	-	71	0	0.00	48	15	23.81
ENSG00000221281	0	genome.wustl.edu	37	6	67069388	67069389	+	RNA	INS	-	-	ACACACACACAT			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	6	67069388	67069389	-	ACACACACACAT	INS	ENSG00000221281	ENST00000408354	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.005:0.011	-	-	-	no_errors	AC002485.1	Clone_based_ensembl_gene	ENSG00000221281	tier1			NA	NA	NA	NA	NA	NA
WDR1	0	genome.wustl.edu	37	4	10077097	10077097	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	4	10077097	10077097	G	T	SNP	WDR1	ENST00000382452	human	ensembl	74_37	-1	known	missense	c.1726	p.L576M	0.994	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR1	HGNC	ENSG00000071127	tier1	-	-	38	0	0.00	27	3	10.00
LRRC8A	0	genome.wustl.edu	37	9	131669718	131669718	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	9	131669718	131669718	C	T	SNP	LRRC8A	ENST00000259324	human	ensembl	74_37	+1	known	missense	c.275	p.T92M	0.364	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802	tier1	rs150865438	GMAF=0.0005	28	0	0.00	32	4	11.11
MYH3	0	genome.wustl.edu	37	17	10541190	10541190	+	Missense_Mutation	SNP	A	A	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	10541190	10541190	A	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.3792	p.N1264K	0.050	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063	tier1	-	-	59	0	0.00	11	7	38.89
XPO1	0	genome.wustl.edu	37	2	61726050	61726051	+	Splice_Site	INS	-	-	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	2	61726050	61726051	-	A	INS	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	splice_site_ins	c.591-3_591-2	e7-2	1.000:0.996	-	-	-	no_errors	XPO1	HGNC	ENSG00000082898	tier1			21	0	0.00	22	3	12.00
MAT2B	0	genome.wustl.edu	37	5	162943725	162943725	+	Missense_Mutation	SNP	G	G	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	5	162943725	162943725	G	C	SNP	MAT2B	ENST00000518095	human	ensembl	74_37	+1	known	missense	c.728	p.R243T	0.000	NULL	pfam_dTDP_dehydrorham_reduct,pfam_Epimerase_deHydtase,pfam_Polysac_CapD-like	-	no_errors	MAT2B	HGNC	ENSG00000038274	tier1	-	-	60	0	0.00	43	17	28.33
C3orf55	0	genome.wustl.edu	37	3	157318056	157318056	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	3	157318056	157318056	G	T	SNP	C3orf55	ENST00000449199	human	ensembl	74_37	+1	known	missense	c.377	p.C126F	0.000	NULL	NULL	-	no_errors	C3orf55	HGNC	ENSG00000174899	tier1	-	-	64	0	0.00	35	4	10.26
FGFR2	0	genome.wustl.edu	37	10	123278339	123278339	+	Nonsense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	10	123278339	123278339	G	T	SNP	FGFR2	ENST00000457416	human	ensembl	74_37	-1	known	nonsense	c.944	p.S315*	1.000	pirsf_FGF_rcpt_fam,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	tier1	-	-	35	0	0.00	33	4	10.81
MYBPC2	0	genome.wustl.edu	37	19	50962526	50962526	+	Missense_Mutation	SNP	C	C	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	19	50962526	50962526	C	G	SNP	MYBPC2	ENST00000357701	human	ensembl	74_37	+1	known	missense	c.2754	p.N918K	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC2	HGNC	ENSG00000086967	tier1	-	-	51	0	0.00	30	6	16.67
SURF6	0	genome.wustl.edu	37	9	136199122	136199122	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	9	136199122	136199122	C	A	SNP	SURF6	ENST00000372022	human	ensembl	74_37	-1	known	missense	c.669	p.R223S	0.187	pfam_Surf6	pfam_Surf6	-	no_errors	SURF6	HGNC	ENSG00000148296	tier1	-	-	25	0	0.00	21	10	32.26
DLG5	0	genome.wustl.edu	37	10	79565430	79565430	+	Silent	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	10	79565430	79565430	G	T	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	silent	c.5157	p.L1719	1.000	NULL	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208	tier1	-	-	59	0	0.00	44	4	8.33
ADAM30	0	genome.wustl.edu	37	1	120438051	120438051	+	Missense_Mutation	SNP	A	A	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	120438051	120438051	A	T	SNP	ADAM30	ENST00000369400	human	ensembl	74_37	-1	known	missense	c.909	p.D303E	0.004	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM30	HGNC	ENSG00000134249	tier1	-	-	29	0	0.00	19	3	13.64
CTTN	0	genome.wustl.edu	37	11	70265954	70265954	+	Frame_Shift_Del	DEL	C	C	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	11	70265954	70265954	C	-	DEL	CTTN	ENST00000301843	human	ensembl	74_37	+1	known	frame_shift_del	c.671	p.Q225fs	1.000	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733	tier1			64	0	0.00	50	23	31.51
GRIA4	0	genome.wustl.edu	37	11	105850542	105850542	+	RNA	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	11	105850542	105850542	C	T	SNP	GRIA4	ENST00000533094	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	GRIA4	HGNC	ENSG00000152578	tier1	-	-	26	0	0.00	13	10	43.48
SEC14L5	0	genome.wustl.edu	37	16	5061242	5061242	+	Nonsense_Mutation	SNP	C	C	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	16	5061242	5061242	C	A	SNP	SEC14L5	ENST00000251170	human	ensembl	74_37	+1	known	nonsense	c.1947	p.Y649*	1.000	superfamily_GOLD,pfscan_GOLD	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L5	HGNC	ENSG00000103184	tier1	-	-	81	0	0.00	60	12	16.67
ZAK	0	genome.wustl.edu	37	2	174034545	174034545	+	Missense_Mutation	SNP	A	A	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	2	174034545	174034545	A	G	SNP	ZAK	ENST00000375213	human	ensembl	74_37	+1	known	missense	c.172	p.S58G	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLTK	Uniprot_gn	ENSG00000091436	tier1	-	-	53	0	0.00	46	4	8.00
DBF4B	0	genome.wustl.edu	37	17	42828395	42828395	+	Frame_Shift_Del	DEL	T	T	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	42828395	42828395	T	-	DEL	DBF4B	ENST00000315005	human	ensembl	74_37	+1	known	frame_shift_del	c.1622	p.G542fs	0.001	NULL	pfam_Znf_DBF,superfamily_BRCT_dom,smart_Znf_DBF	-	no_errors	DBF4B	HGNC	ENSG00000161692	tier1			65	0	0.00	73	22	23.16
ENSG00000268845	0	genome.wustl.edu	37	19	6954619	6954619	+	RNA	SNP	T	T	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	19	6954619	6954619	T	C	SNP	ENSG00000268845	ENST00000593558	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RP11-1137G4.3	Clone_based_vega_gene	ENSG00000268845	tier1	-	-	84	0	0.00	128	27	17.42
TMEM116	0	genome.wustl.edu	37	12	112429640	112429640	+	Nonsense_Mutation	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	12	112429640	112429640	C	T	SNP	TMEM116	ENST00000552374	human	ensembl	74_37	-1	known	nonsense	c.132	p.W44*	1.000	NULL	prints_GCR1-cAMP_receptor	-	no_errors	TMEM116	HGNC	ENSG00000198270	tier1	-	-	71	0	0.00	50	5	8.93
ABCB1	0	genome.wustl.edu	37	7	87214969	87214969	+	Silent	SNP	A	A	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	7	87214969	87214969	A	G	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	silent	c.145	p.L49	0.210	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563	tier1	-	-	46	0	0.00	23	6	20.00
NRXN2	0	genome.wustl.edu	37	11	64374700	64374700	+	Missense_Mutation	SNP	T	T	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	11	64374700	64374700	T	C	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.5107	p.K1703E	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	tier1	-	-	37	0	0.00	34	12	26.09
LPXN	0	genome.wustl.edu	37	11	58338061	58338061	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	11	58338061	58338061	G	T	SNP	LPXN	ENST00000528954	human	ensembl	74_37	-1	known	missense	c.154	p.L52I	0.000	pirsf_Leupaxin	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	-	no_errors	LPXN	HGNC	ENSG00000110031	tier1	-	-	41	0	0.00	31	11	26.19
KLRG1	0	genome.wustl.edu	37	12	9162633	9162633	+	RNA	SNP	C	C	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	12	9162633	9162633	C	G	SNP	KLRG1	ENST00000538029	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.149	-	-	-	no_errors	KLRG1	HGNC	ENSG00000139187	tier1	-	-	11	0	0.00	16	7	30.43
OR2L3	0	genome.wustl.edu	37	1	248224054	248224054	+	Frame_Shift_Del	DEL	T	T	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	248224054	248224054	T	-	DEL	OR2L3	ENST00000359959	human	ensembl	74_37	+1	known	frame_shift_del	c.71	p.F25fs	0.025	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128	tier1			101	0	0.00	25	3	10.71
POTEM	0	genome.wustl.edu	37	14	20012819	20012822	+	Frame_Shift_Del	DEL	AAAG	AAAG	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	AAAG	AAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	14	20012819	20012822	AAAG	-	DEL	POTEM	ENST00000547722	human	ensembl	74_37	-1	known	frame_shift_del	c.937_934	p.I314fs	0.009:0.013:0.017:0.020	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEM	HGNC	ENSG00000187537	tier1			42	0	0.00	52	8	13.33
DNAH9	0	genome.wustl.edu	37	17	11593505	11593505	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	11593505	11593505	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.4366	p.R1456W	0.951	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	tier1	rs141375188	-	66	0	0.00	25	26	50.98
SAMD9	0	genome.wustl.edu	37	7	92735360	92735360	+	Silent	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	7	92735360	92735360	C	T	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	silent	c.51	p.E17	0.768	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	tier1	-	-	56	0	0.00	39	5	11.36
HLA-DQA2	0	genome.wustl.edu	37	6	32713602	32713602	+	Silent	SNP	T	T	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	6	32713602	32713602	T	C	SNP	HLA-DQA2	ENST00000374940	human	ensembl	74_37	+1	known	silent	c.366	p.P122	0.078	pfam_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DQA2	HGNC	ENSG00000237541	tier1	rs142901825	-	56	0	0.00	78	9	10.34
ANKRD20A8P	0	genome.wustl.edu	37	2	95494915	95494915	+	RNA	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	2	95494915	95494915	C	T	SNP	ANKRD20A8P	ENST00000432432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.911	-	-	-	no_errors	ANKRD20A8P	HGNC	ENSG00000229089	tier1	-	-	244	0	0.00	240	63	20.72
HLA-DQA2	0	genome.wustl.edu	37	6	32713598	32713598	+	Missense_Mutation	SNP	T	T	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	6	32713598	32713598	T	C	SNP	HLA-DQA2	ENST00000374940	human	ensembl	74_37	+1	known	missense	c.362	p.F121S	0.252	pfscan_Ig-like_dom	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DQA2	HGNC	ENSG00000237541	tier1	rs138296677	-	60	0	0.00	71	11	13.41
GMPS	0	genome.wustl.edu	37	3	155615770	155615770	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	3	155615770	155615770	G	T	SNP	GMPS	ENST00000496455	human	ensembl	74_37	+1	known	missense	c.264	p.W88C	1.000	pfam_GATASE,tigrfam_GMP_synth_N	pfam_GATASE,pfam_GMP_synth_C,pfam_Peptidase_C26,pfam_NAD/GMP_synthase,pfam_QueC,pfam_Asn_synthase,pfam_tRNA-specific_2-thiouridylase,tigrfam_GMP_synth_N	-	no_errors	GMPS	HGNC	ENSG00000163655	tier1	-	-	71	0	0.00	34	4	10.53
DUOX2	0	genome.wustl.edu	37	15	45388168	45388168	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	15	45388168	45388168	G	A	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	missense	c.3938	p.T1313I	0.258	pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279	tier1	-	-	47	0	0.00	44	4	8.16
CST11	0	genome.wustl.edu	37	20	23433382	23433382	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	20	23433382	23433382	G	T	SNP	CST11	ENST00000377009	human	ensembl	74_37	-1	known	missense	c.67	p.P23T	0.002	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST11	HGNC	ENSG00000125831	tier1	-	-	36	0	0.00	10	3	23.08
PLCB4	0	genome.wustl.edu	37	20	9404506	9404506	+	Missense_Mutation	SNP	A	A	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	20	9404506	9404506	A	C	SNP	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	missense	c.2395	p.I799L	1.000	pirsf_PLC-beta,superfamily_C2_dom,smart_C2_dom	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	tier1	-	-	60	0	0.00	37	17	30.91
TXLNG2P	0	genome.wustl.edu	37	Y	21758039	21758039	+	RNA	DEL	A	A	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	Y	21758039	21758039	A	-	DEL	TXLNG2P	ENST00000253320	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	TXLNG2P	HGNC	ENSG00000131002	tier1			27	0	0.00	22	5	18.52
LIMK1	0	genome.wustl.edu	37	7	73500126	73500126	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	7	73500126	73500126	G	T	SNP	LIMK1	ENST00000336180	human	ensembl	74_37	+1	known	missense	c.104	p.G35V	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	tier1	-	-	41	0	0.00	38	4	9.52
LAMC3	0	genome.wustl.edu	37	9	133954581	133954581	+	Silent	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	9	133954581	133954581	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	silent	c.3823	p.L1275	0.318	NULL	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	tier1	-	-	61	0	0.00	54	28	34.15
ITPK1-AS1	0	genome.wustl.edu	37	14	93535790	93535790	+	RNA	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	14	93535790	93535790	G	T	SNP	ITPK1-AS1	ENST00000553639	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ITPK1-AS1	HGNC	ENSG00000258730	tier1	-	-	38	0	0.00	31	4	11.43
ADAMTS12	0	genome.wustl.edu	37	5	33576831	33576831	+	Silent	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	5	33576831	33576831	C	T	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	silent	c.3300	p.Q1100	0.054	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	tier1	-	-	38	0	0.00	27	4	12.90
