Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
HRNR	0	genome.wustl.edu	37	1	152186100	152186100	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	1	152186100	152186100	C	T	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.8005	p.G2669S	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915	tier1	rs142956706	-	73	0	0.00	42	29	40.85
CHD3	0	genome.wustl.edu	37	17	7793747	7793748	+	RNA	INS	-	-	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	17	7793747	7793748	-	A	INS	CHD3	ENST00000574022	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.217:0.454	-	-	-	no_errors	CHD3	HGNC	ENSG00000170004	tier1			12	0	0.00	5	3	37.50
HRNR	0	genome.wustl.edu	37	1	152185905	152185905	+	Missense_Mutation	SNP	C	C	G			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	1	152185905	152185905	C	G	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.8200	p.D2734H	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915	tier1	-	-	11	0	0.00	7	8	53.33
OGDHL	0	genome.wustl.edu	37	10	50944187	50944187	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	10	50944187	50944187	C	T	SNP	OGDHL	ENST00000374103	human	ensembl	74_37	-1	known	missense	c.2791	p.A931T	1.000	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444	tier1	-	-	25	0	0.00	12	9	42.86
TACC2	0	genome.wustl.edu	37	10	123970007	123970007	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	10	123970007	123970007	G	A	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	missense	c.6067	p.V2023I	1.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	tier1	-	-	23	0	0.00	21	13	37.14
ENSG00000179253	0	genome.wustl.edu	37	20	60294111	60294112	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	20	60294111	60294112	CT	-	DEL	ENSG00000179253	ENST00000317652	human	ensembl	74_37	-1	known	frame_shift_del	c.116_115	p.S39fs	0.000:0.000	NULL	NULL	-	no_errors	RP11-429E11.3	Clone_based_vega_gene	ENSG00000179253	tier1			46	0	0.00	12	24	66.67
LINC00461	0	genome.wustl.edu	37	5	87963196	87963197	+	RNA	INS	-	-	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	5	87963196	87963197	-	A	INS	LINC00461	ENST00000500197	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.454:0.030	-	-	-	no_errors	LINC00461	HGNC	ENSG00000245526	tier1			37	0	0.00	27	3	10.00
OR2AT4	0	genome.wustl.edu	37	11	74799812	74799812	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	11	74799812	74799812	C	T	SNP	OR2AT4	ENST00000305159	human	ensembl	74_37	-1	known	missense	c.947	p.C316Y	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2AT4	HGNC	ENSG00000171561	tier1	-	-	63	0	0.00	55	29	34.52
SMG5	0	genome.wustl.edu	37	1	156231177	156231177	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	1	156231177	156231177	C	A	SNP	SMG5	ENST00000361813	human	ensembl	74_37	-1	known	missense	c.2054	p.R685L	1.000	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG5	HGNC	ENSG00000198952	tier1	-	-	52	0	0.00	38	36	47.37
ENSG00000257434	0	genome.wustl.edu	37	12	75435986	75435987	+	RNA	INS	-	-	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	12	75435986	75435987	-	T	INS	ENSG00000257434	ENST00000547040	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.005	-	-	-	no_errors	RP11-81K13.1	Clone_based_vega_gene	ENSG00000257434	tier1			22	0	0.00	21	3	12.50
ZNF521	0	genome.wustl.edu	37	18	22805728	22805728	+	Silent	SNP	G	G	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	18	22805728	22805728	G	T	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	silent	c.2154	p.T718	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795	tier1	-	-	43	0	0.00	43	4	8.51
HRNR	0	genome.wustl.edu	37	1	152188496	152188496	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	1	152188496	152188496	C	T	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.5609	p.G1870E	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915	tier1	-	-	589	1	0.17	588	62	9.54
TNRC18	0	genome.wustl.edu	37	7	5417646	5417646	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	7	5417646	5417646	C	A	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	missense	c.2162	p.R721L	0.726	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	tier1	-	-	20	0	0.00	16	10	37.04
RPLP2	0	genome.wustl.edu	37	11	810010	810018	+	RNA	DEL	CTCCGCCGC	CTCCGCCGC	-			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	CTCCGCCGC	CTCCGCCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	11	810010	810018	CTCCGCCGC	-	DEL	RPLP2	ENST00000532004	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.006:0.006:0.009:0.013:0.013:0.025:0.024	-	-	-	no_errors	RPLP2	HGNC	ENSG00000177600	tier1			NA	NA	NA	NA	NA	NA
NLRP13	0	genome.wustl.edu	37	19	56416319	56416319	+	Silent	SNP	T	T	C			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	19	56416319	56416319	T	C	SNP	NLRP13	ENST00000342929	human	ensembl	74_37	-1	known	silent	c.2607	p.L869	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	tier1	-	-	52	0	0.00	30	16	34.78
CCDC54	0	genome.wustl.edu	37	3	107097189	107097189	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	3	107097189	107097189	C	A	SNP	CCDC54	ENST00000261058	human	ensembl	74_37	+1	known	missense	c.755	p.T252N	1.000	NULL	NULL	-	no_errors	CCDC54	HGNC	ENSG00000138483	tier1	-	-	63	0	0.00	66	6	8.33
MAML3	0	genome.wustl.edu	37	4	140812037	140812037	+	Missense_Mutation	SNP	A	A	G			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	4	140812037	140812037	A	G	SNP	MAML3	ENST00000509479	human	ensembl	74_37	-1	known	missense	c.553	p.F185L	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	tier1	-	-	47	0	0.00	35	23	39.66
ZNF285	0	genome.wustl.edu	37	19	44892206	44892206	+	Silent	SNP	C	C	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	19	44892206	44892206	C	A	SNP	ZNF285	ENST00000330997	human	ensembl	74_37	-1	known	silent	c.201	p.S67	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508	tier1	rs73557001	-	34	0	0.00	49	8	14.04
SMPDL3B	0	genome.wustl.edu	37	1	28285146	28285146	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	1	28285146	28285146	C	A	SNP	SMPDL3B	ENST00000373894	human	ensembl	74_37	+1	known	missense	c.1165	p.L389M	0.782	pirsf_ASM-like_Pdiesterase_prd	pfam_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	-	no_errors	SMPDL3B	HGNC	ENSG00000130768	tier1	-	-	20	0	0.00	10	12	54.55
CHODL	0	genome.wustl.edu	37	21	19629315	19629315	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	21	19629315	19629315	G	A	SNP	CHODL	ENST00000299295	human	ensembl	74_37	+1	known	missense	c.418	p.G140R	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CHODL	HGNC	ENSG00000154645	tier1	rs202176979	GMAF=0.0005	72	0	0.00	38	42	52.50
BRD8	0	genome.wustl.edu	37	5	137501727	137501727	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	5	137501727	137501727	G	T	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.1068	p.D356E	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983	tier1	-	-	67	0	0.00	45	4	8.16
FAM157A	0	genome.wustl.edu	37	3	197880164	197880164	+	RNA	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	3	197880164	197880164	G	A	SNP	FAM157A	ENST00000431569	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FAM157A	HGNC	ENSG00000236438	tier1	-	-	35	0	0.00	31	8	20.51
TP53	0	genome.wustl.edu	37	17	7577095	7577095	+	Missense_Mutation	SNP	G	G	C			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	17	7577095	7577095	G	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.843	p.D281E	0.993	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	47	0	0.00	24	22	47.83
PDZD2	0	genome.wustl.edu	37	5	32089879	32089879	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	5	32089879	32089879	C	T	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.6325	p.P2109S	0.004	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	tier1	-	-	41	0	0.00	20	3	13.04
ENSG00000232274	0	genome.wustl.edu	37	1	143210651	143210651	+	RNA	SNP	A	A	G			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	1	143210651	143210651	A	G	SNP	ENSG00000232274	ENST00000412204	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-782C8.2	Clone_based_vega_gene	ENSG00000232274	tier1	-	-	17	0	0.00	15	6	28.57
SLC30A5	0	genome.wustl.edu	37	5	68411962	68411962	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	5	68411962	68411962	G	T	SNP	SLC30A5	ENST00000396591	human	ensembl	74_37	+1	known	missense	c.993	p.M331I	1.000	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A5	HGNC	ENSG00000145740	tier1	-	-	24	0	0.00	21	4	16.00
FDXACB1	0	genome.wustl.edu	37	11	111745984	111745984	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	11	111745984	111745984	G	A	SNP	FDXACB1	ENST00000260257	human	ensembl	74_37	-1	known	missense	c.1537	p.R513C	0.998	NULL	pfam_DUF2431,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd	-	no_errors	FDXACB1	HGNC	ENSG00000255561	tier1	-	-	55	0	0.00	52	20	27.78
FAM109A	0	genome.wustl.edu	37	12	111801137	111801137	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	12	111801137	111801137	G	A	SNP	FAM109A	ENST00000450786	human	ensembl	74_37	-1	known	missense	c.37	p.R13W	0.999	NULL	NULL	-	no_errors	FAM109A	HGNC	ENSG00000198324	tier1	-	-	48	0	0.00	31	24	43.64
ZBTB4	0	genome.wustl.edu	37	17	7366451	7366451	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	17	7366451	7366451	C	T	SNP	ZBTB4	ENST00000311403	human	ensembl	74_37	-1	known	missense	c.1850	p.R617H	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282	tier1	rs200881841	-	42	0	0.00	20	19	48.72
FAM157A	0	genome.wustl.edu	37	3	197880166	197880166	+	RNA	SNP	A	A	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	3	197880166	197880166	A	T	SNP	FAM157A	ENST00000431569	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	FAM157A	HGNC	ENSG00000236438	tier1	-	-	34	0	0.00	31	8	20.51
MT-ND6	0	genome.wustl.edu	37	MT	14362	14362	+	Silent	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	MT	14362	14362	C	T	SNP	MT-ND6	ENST00000361681	human	ensembl	74_37	-1	known	silent	c.312	p.L104	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	-	no_errors	MT-ND6	HGNC	ENSG00000198695	tier1	-	-	220	0	0.00	13	2	13.33
COLGALT2	0	genome.wustl.edu	37	1	183933060	183933060	+	Silent	SNP	G	G	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	1	183933060	183933060	G	T	SNP	COLGALT2	ENST00000361927	human	ensembl	74_37	-1	known	silent	c.927	p.L309	0.998	NULL	pfam_Glyco_trans_25	-	no_errors	COLGALT2	HGNC	ENSG00000198756	tier1	-	-	42	0	0.00	46	4	8.00
TP53	0	genome.wustl.edu	37	17	7577124	7577124	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	17	7577124	7577124	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.814	p.V272M	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	42	0	0.00	23	18	43.90
LOC101929974	0	genome.wustl.edu	37	12	131692260	131692260	+	RNA	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	12	131692260	131692260	G	A	SNP	LOC101929974	ENST00000376678	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-638F5.1	Clone_based_vega_gene	ENSG00000204603	tier1	-	-	58	0	0.00	30	25	45.45
ENPP3	0	genome.wustl.edu	37	6	132014684	132014684	+	Silent	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	6	132014684	132014684	G	A	SNP	ENPP3	ENST00000357639	human	ensembl	74_37	+1	known	silent	c.1332	p.L444	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269	tier1	-	-	81	0	0.00	43	18	29.51
ENSG00000267601	0	genome.wustl.edu	37	17	76851730	76851730	+	RNA	SNP	A	A	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	17	76851730	76851730	A	T	SNP	ENSG00000267601	ENST00000587434	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-323N12.5	Clone_based_vega_gene	ENSG00000267601	tier1	-	-	58	0	0.00	44	4	8.33
DGCR5	0	genome.wustl.edu	37	22	18979573	18979573	+	RNA	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	22	18979573	18979573	G	A	SNP	DGCR5	ENST00000438934	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DGCR5	HGNC	ENSG00000237517	tier1	-	-	19	0	0.00	15	4	21.05
MAS1L	0	genome.wustl.edu	37	6	29454663	29454663	+	Missense_Mutation	SNP	A	A	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	6	29454663	29454663	A	T	SNP	MAS1L	ENST00000377127	human	ensembl	74_37	-1	known	missense	c.1017	p.D339E	0.001	NULL	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	MAS1L	HGNC	ENSG00000204687	tier1	-	-	75	0	0.00	35	33	48.53
C12orf10	0	genome.wustl.edu	37	12	53699735	53699735	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	12	53699735	53699735	G	A	SNP	C12orf10	ENST00000549488	human	ensembl	74_37	+1	putative	missense	c.44	p.G15E	1.000	pfam_Met-dep_prot_hydro	pfam_Met-dep_prot_hydro	-	no_errors	C12orf10	HGNC	ENSG00000139637	tier1	-	-	47	0	0.00	25	3	10.71
TNRC18	0	genome.wustl.edu	37	7	5353375	5353375	+	Nonsense_Mutation	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	7	5353375	5353375	G	A	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	nonsense	c.7147	p.R2383*	0.998	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	tier1	-	-	23	0	0.00	9	10	52.63
STRIP1	0	genome.wustl.edu	37	1	110580694	110580703	+	RNA	DEL	ATATATATAT	ATATATATAT	-			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	ATATATATAT	ATATATATAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	1	110580694	110580703	ATATATATAT	-	DEL	STRIP1	ENST00000489059	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.001	-	-	-	no_errors	STRIP1	HGNC	ENSG00000143093	tier1			NA	NA	NA	NA	NA	NA
CABIN1	0	genome.wustl.edu	37	22	24573619	24573619	+	Missense_Mutation	SNP	A	A	C			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	22	24573619	24573619	A	C	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	missense	c.6353	p.K2118T	0.996	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	tier1	-	-	72	0	0.00	58	27	31.76
ZNF207	0	genome.wustl.edu	37	17	30700337	30700338	+	RNA	INS	-	-	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	17	30700337	30700338	-	A	INS	ZNF207	ENST00000584416	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	ZNF207	HGNC	ENSG00000010244	tier1			24	0	0.00	24	3	11.11
NPAP1	0	genome.wustl.edu	37	15	24923769	24923769	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	15	24923769	24923769	C	T	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.2755	p.P919S	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823	tier1	-	-	26	0	0.00	20	21	51.22
FGFR4	0	genome.wustl.edu	37	5	176524315	176524315	+	Missense_Mutation	SNP	T	T	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	5	176524315	176524315	T	A	SNP	FGFR4	ENST00000292408	human	ensembl	74_37	+1	known	missense	c.2176	p.W726R	1.000	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR4	HGNC	ENSG00000160867	tier1	-	-	51	0	0.00	21	4	16.00
ADI1	0	genome.wustl.edu	37	2	3502846	3502846	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	2	3502846	3502846	G	A	SNP	ADI1	ENST00000327435	human	ensembl	74_37	-1	known	missense	c.428	p.T143M	1.000	pfam_Acireductn_dOase_family,pfam_AraC-bd,superfamily_RmlC_Cupin	pfam_Acireductn_dOase_family,pfam_Cupin_2,pfam_AraC-bd,superfamily_RmlC_Cupin	-	no_errors	ADI1	HGNC	ENSG00000182551	tier1	-	-	58	0	0.00	47	55	53.92
IKZF2	0	genome.wustl.edu	37	2	213914541	213914541	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	2	213914541	213914541	C	A	SNP	IKZF2	ENST00000434687	human	ensembl	74_37	-1	known	missense	c.470	p.R157I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF2	HGNC	ENSG00000030419	tier1	-	-	83	0	0.00	46	42	47.73
MED16	0	genome.wustl.edu	37	19	871225	871225	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	19	871225	871225	C	T	SNP	MED16	ENST00000269814	human	ensembl	74_37	-1	known	missense	c.1934	p.R645Q	0.017	NULL	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221	tier1	-	-	13	0	0.00	11	9	45.00
PRKCZ	0	genome.wustl.edu	37	1	2077516	2077516	+	Silent	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	1	2077516	2077516	C	T	SNP	PRKCZ	ENST00000378567	human	ensembl	74_37	+1	known	silent	c.603	p.D201	1.000	pirsf_PKC_zeta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCZ	HGNC	ENSG00000067606	tier1	-	-	35	0	0.00	19	16	45.71
CAT	0	genome.wustl.edu	37	11	34490058	34490058	+	RNA	DEL	A	A	-			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	11	34490058	34490058	A	-	DEL	CAT	ENST00000525707	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CAT	HGNC	ENSG00000121691	tier1			18	0	0.00	28	4	12.50
FLG	0	genome.wustl.edu	37	1	152280704	152280704	+	Missense_Mutation	SNP	A	A	G			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	1	152280704	152280704	A	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.6658	p.S2220P	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	tier1	-	-	107	0	0.00	150	14	8.54
ANKRD26	0	genome.wustl.edu	37	10	27352964	27352964	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	10	27352964	27352964	C	A	SNP	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	missense	c.1463	p.G488V	0.001	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	tier1	-	-	108	0	0.00	73	17	18.89
ITGAM	0	genome.wustl.edu	37	16	31338251	31338251	+	Silent	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	16	31338251	31338251	G	A	SNP	ITGAM	ENST00000544665	human	ensembl	74_37	+1	known	silent	c.2706	p.V902	0.999	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896	tier1	-	-	36	0	0.00	18	70	79.55
DACH1	0	genome.wustl.edu	37	13	72440659	72440664	+	In_Frame_Del	DEL	GCCGCC	GCCGCC	-			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	GCCGCC	GCCGCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	13	72440659	72440664	GCCGCC	-	DEL	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	in_frame_del	c.249_244	p.GG82in_frame_del	0.750:0.744:0.739:0.734:0.729:0.725	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659	tier1			NA	NA	NA	NA	NA	NA
CLRN2	0	genome.wustl.edu	37	4	17524516	17524516	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	4	17524516	17524516	G	A	SNP	CLRN2	ENST00000511148	human	ensembl	74_37	+1	known	missense	c.283	p.A95T	0.061	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	CLRN2	HGNC	ENSG00000249581	tier1	-	-	35	0	0.00	28	30	51.72
SMCO2	0	genome.wustl.edu	37	12	27627847	27627848	+	Splice_Site	INS	-	-	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	12	27627847	27627848	-	T	INS	SMCO2	ENST00000416383	human	ensembl	74_37	+1	known	splice_site_ins	c.362+1_362+1	e3+1	0.816:0.976	-	-	-	no_errors	SMCO2	HGNC	ENSG00000165935	tier1			49	0	0.00	62	67	51.94
RPL5	0	genome.wustl.edu	37	1	93300445	93300445	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	1	93300445	93300445	G	T	SNP	RPL5	ENST00000370321	human	ensembl	74_37	+1	known	missense	c.299	p.C100F	1.000	pfam_Ribosomal_L18/L5,prints_Rbsml_L5_euk/L18_arc	pfam_Ribosomal_L18/L5,prints_Rbsml_L5_euk/L18_arc	-	no_errors	RPL5	HGNC	ENSG00000122406	tier1	-	-	49	0	0.00	45	18	28.57
MAP1B	0	genome.wustl.edu	37	5	71491298	71491298	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	5	71491298	71491298	C	A	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.2116	p.P706T	0.019	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	tier1	-	-	20	0	0.00	23	4	14.81
RBL2	0	genome.wustl.edu	37	16	53525451	53525451	+	RNA	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	16	53525451	53525451	G	A	SNP	RBL2	ENST00000379935	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	RBL2	HGNC	ENSG00000103479	tier1	-	-	50	0	0.00	33	4	10.81
EXD3	0	genome.wustl.edu	37	9	140218215	140218215	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	9	140218215	140218215	C	T	SNP	EXD3	ENST00000340951	human	ensembl	74_37	-1	known	missense	c.2146	p.V716M	1.000	pfam_Mut7-C_RNAse_dom	pfam_Mut7-C_RNAse_dom,pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD3	HGNC	ENSG00000187609	tier1	-	-	75	0	0.00	32	32	50.00
LMTK2	0	genome.wustl.edu	37	7	97788700	97788700	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	7	97788700	97788700	C	T	SNP	LMTK2	ENST00000297293	human	ensembl	74_37	+1	known	missense	c.620	p.A207V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	tier1	-	-	105	0	0.00	75	57	43.18
C14orf164	0	genome.wustl.edu	37	14	23732145	23732145	+	Nonsense_Mutation	SNP	C	C	T			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	14	23732145	23732145	C	T	SNP	C14orf164	ENST00000430154	human	ensembl	74_37	+1	known	nonsense	c.490	p.R164*	1.000	NULL	NULL	-	no_errors	C14orf164	HGNC	ENSG00000215277	tier1	-	-	71	0	0.00	62	76	55.07
SPATA31A6	0	genome.wustl.edu	37	9	43627364	43627364	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	9	43627364	43627364	C	A	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.1323	p.Q441H	0.000	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775	tier1	-	-	184	0	0.00	84	86	50.29
GORASP2	0	genome.wustl.edu	37	2	171811195	171811195	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A8JL-01A-11D-A36J-09	TCGA-MB-A8JL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0476440f-78db-40fe-a45e-5c5e3e44bc03	3e532fd9-8d4e-4826-8969-6d5699e774ff	2	171811195	171811195	G	A	SNP	GORASP2	ENST00000452526	human	ensembl	74_37	+1	known	missense	c.638	p.R213Q	1.000	pfam_GRASP55/65_PDZ	pfam_GRASP55/65_PDZ,superfamily_PDZ	-	no_errors	GORASP2	HGNC	ENSG00000115806	tier1	-	-	57	0	0.00	45	37	45.12
