Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CTNND2	0	genome.wustl.edu	37	5	10973228	10973228	+	RNA	SNP	G	G	A			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	5	10973228	10973228	G	A	SNP	CTNND2	ENST00000495388	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTNND2	HGNC	ENSG00000169862	tier1	-	-	17	0	0.00	23	27	54.00
ENSG00000261553	0	genome.wustl.edu	37	13	76123902	76123916	+	RNA	DEL	GGCGGCGGCGGCGAA	GGCGGCGGCGGCGAA	-			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	GGCGGCGGCGGCGAA	GGCGGCGGCGGCGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	13	76123902	76123916	GGCGGCGGCGGCGAA	-	DEL	ENSG00000261553	ENST00000563635	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.972:0.982:0.960:0.622:0.506:0.040:0.014:0.013:0.030:0.026:0.014:0.007:0.004:0.000:0.000	-	-	-	no_errors	RP11-29G8.3	Clone_based_vega_gene	ENSG00000261553	tier1			NA	NA	NA	NA	NA	NA
BCR	0	genome.wustl.edu	37	22	23658274	23658275	+	RNA	INS	-	-	TGC			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	22	23658274	23658275	-	TGC	INS	BCR	ENST00000436990	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	BCR	HGNC	ENSG00000186716	tier1			45	0	0.00	57	7	10.94
FLJ40448	0	genome.wustl.edu	37	16	88809844	88809844	+	RNA	SNP	A	A	C			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	16	88809844	88809844	A	C	SNP	FLJ40448	ENST00000333666	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP5-1142A6.8	Clone_based_vega_gene	ENSG00000182376	tier1	-	-	43	0	0.00	39	22	36.07
SENP3	0	genome.wustl.edu	37	17	7475184	7475184	+	RNA	SNP	T	T	A			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	17	7475184	7475184	T	A	SNP	SENP3	ENST00000578813	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.976	-	-	-	no_errors	SENP3	HGNC	ENSG00000161956	tier1	-	-	21	0	0.00	31	8	20.00
TRPV6	0	genome.wustl.edu	37	7	142569542	142569542	+	Missense_Mutation	SNP	C	C	T			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	7	142569542	142569542	C	T	SNP	TRPV6	ENST00000359396	human	ensembl	74_37	-1	known	missense	c.2096	p.R699Q	0.904	prints_TRPV6_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125	tier1	-	-	66	0	0.00	46	38	45.24
ACTN2	0	genome.wustl.edu	37	1	236911194	236911194	+	RNA	DEL	C	C	-			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	1	236911194	236911194	C	-	DEL	ACTN2	ENST00000492101	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACTN2	HGNC	ENSG00000077522	tier1			26	0	0.00	32	20	38.46
GALNT6	0	genome.wustl.edu	37	12	51785413	51785414	+	RNA	INS	-	-	A			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	12	51785413	51785414	-	A	INS	GALNT6	ENST00000603203	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.005	-	-	-	no_errors	GALNT6	HGNC	ENSG00000139629	tier1			20	0	0.00	15	4	21.05
RBMXL3	0	genome.wustl.edu	37	X	114425181	114425181	+	Missense_Mutation	SNP	A	A	G			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	X	114425181	114425181	A	G	SNP	RBMXL3	ENST00000424776	human	ensembl	74_37	+1	known	missense	c.1177	p.R393G	0.738	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL3	HGNC	ENSG00000175718	tier1	-	-	30	0	0.00	30	6	16.67
SDHAP1	0	genome.wustl.edu	37	3	195686645	195686645	+	RNA	SNP	C	C	T			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	3	195686645	195686645	C	T	SNP	SDHAP1	ENST00000427149	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	SDHAP1	HGNC	ENSG00000185485	tier1	-	-	13	0	0.00	15	5	25.00
EIF4A3	0	genome.wustl.edu	37	17	78111251	78111251	+	Missense_Mutation	SNP	G	G	A			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	17	78111251	78111251	G	A	SNP	EIF4A3	ENST00000269349	human	ensembl	74_37	-1	known	missense	c.917	p.S306L	0.986	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A3	HGNC	ENSG00000141543	tier1	-	-	37	0	0.00	45	26	36.62
DSG2	0	genome.wustl.edu	37	18	29110997	29110997	+	Silent	SNP	C	C	T			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	18	29110997	29110997	C	T	SNP	DSG2	ENST00000261590	human	ensembl	74_37	+1	known	silent	c.1062	p.V354	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG2	HGNC	ENSG00000046604	tier1	-	-	77	0	0.00	111	11	9.02
ZNF219	0	genome.wustl.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	GAGGCT	-			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	GAGGCT	GAGGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	14	21560753	21560758	GAGGCT	-	DEL	ZNF219	ENST00000360947	human	ensembl	74_37	-1	known	in_frame_del	c.703_698	p.QP233in_frame_del	0.989:0.990:0.999:1.000:1.000:0.998	prints_Histamine_H3_rcpt	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Histamine_H3_rcpt	-	no_errors	ZNF219	HGNC	ENSG00000165804	tier1			NA	NA	NA	NA	NA	NA
RFPL3	0	genome.wustl.edu	37	22	32756308	32756308	+	Missense_Mutation	SNP	G	G	A			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	22	32756308	32756308	G	A	SNP	RFPL3	ENST00000249007	human	ensembl	74_37	+1	known	missense	c.443	p.R148Q	0.084	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL3	HGNC	ENSG00000128276	tier1	-	-	128	0	0.00	198	25	11.21
OR5M10	0	genome.wustl.edu	37	11	56344977	56344977	+	Missense_Mutation	SNP	G	G	T			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	11	56344977	56344977	G	T	SNP	OR5M10	ENST00000526812	human	ensembl	74_37	-1	known	missense	c.221	p.S74Y	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M10	HGNC	ENSG00000254834	tier1	-	-	66	0	0.00	89	41	31.06
ADAMTS19	0	genome.wustl.edu	37	5	128797315	128797316	+	In_Frame_Ins	INS	-	-	CCCGGC			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	5	128797315	128797316	-	CCCGGC	INS	ADAMTS19	ENST00000274487	human	ensembl	74_37	+1	known	in_frame_ins	c.594_595	p.202in_frame_insPG	0.000:0.016	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	tier1			NA	NA	NA	NA	NA	NA
RNF213	0	genome.wustl.edu	37	17	78337533	78337533	+	Missense_Mutation	SNP	C	C	T			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	17	78337533	78337533	C	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.11693	p.S3898F	0.550	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	tier1	-	-	30	0	0.00	26	26	50.00
PIEZO1	0	genome.wustl.edu	37	16	88800395	88800395	+	Missense_Mutation	SNP	C	C	G			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	16	88800395	88800395	C	G	SNP	PIEZO1	ENST00000301015	human	ensembl	74_37	-1	novel	missense	c.2248	p.E750Q	0.340	NULL	pfam_Piezo	-	no_errors	PIEZO1	HGNC	ENSG00000103335	tier1	rs202139830	-	28	0	0.00	32	4	11.11
TENM2	0	genome.wustl.edu	37	5	167622271	167622271	+	Silent	SNP	C	C	T			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	5	167622271	167622271	C	T	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	silent	c.2871	p.Y957	0.435	superfamily_CarboxyPept-like_regulatory,superfamily_ConA-like_lec_gl_sf	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934	tier1	-	-	109	0	0.00	131	81	37.85
PPM1B	0	genome.wustl.edu	37	2	44396279	44396280	+	RNA	INS	-	-	CGGAGGCGG			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	2	44396279	44396280	-	CGGAGGCGG	INS	PPM1B	ENST00000378540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:0.999	-	-	-	no_errors	PPM1B	HGNC	ENSG00000138032	tier1			NA	NA	NA	NA	NA	NA
TPTE2	0	genome.wustl.edu	37	13	19999954	19999955	+	Frame_Shift_Ins	INS	-	-	GCGAA			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	13	19999954	19999955	-	GCGAA	INS	TPTE2	ENST00000462409	human	ensembl	74_37	-1	known	frame_shift_ins	c.929_928	p.Q310fs	0.013:0.001	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ	-	no_errors	TPTE2	HGNC	ENSG00000132958	tier1			NA	NA	NA	NA	NA	NA
SLC22A8	0	genome.wustl.edu	37	11	62767307	62767307	+	Missense_Mutation	SNP	G	G	A			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	11	62767307	62767307	G	A	SNP	SLC22A8	ENST00000336232	human	ensembl	74_37	-1	known	missense	c.445	p.R149C	0.998	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452	tier1	-	-	70	0	0.00	63	46	41.82
XYLB	0	genome.wustl.edu	37	3	38411731	38411732	+	RNA	INS	-	-	CACACA			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	3	38411731	38411732	-	CACACA	INS	XYLB	ENST00000487569	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	XYLB	HGNC	ENSG00000093217	tier1			NA	NA	NA	NA	NA	NA
GRIN3A	0	genome.wustl.edu	37	9	104449124	104449124	+	Missense_Mutation	SNP	C	C	T			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	9	104449124	104449124	C	T	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.1058	p.R353H	0.139	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	tier1	-	-	70	0	0.00	48	62	55.86
CFDP1	0	genome.wustl.edu	37	16	75327731	75327732	+	RNA	INS	-	-	A			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	16	75327731	75327732	-	A	INS	CFDP1	ENST00000570103	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.904:0.940	-	-	-	no_errors	CFDP1	HGNC	ENSG00000153774	tier1			40	0	0.00	71	9	11.25
ARHGEF37	0	genome.wustl.edu	37	5	149001584	149001584	+	Missense_Mutation	SNP	G	G	T			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	5	149001584	149001584	G	T	SNP	ARHGEF37	ENST00000333677	human	ensembl	74_37	+1	known	missense	c.1294	p.A432S	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF37	HGNC	ENSG00000183111	tier1	-	-	40	0	0.00	44	16	26.67
ENSG00000249237	0	genome.wustl.edu	37	1	84815493	84815493	+	RNA	SNP	C	C	T			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	1	84815493	84815493	C	T	SNP	ENSG00000249237	ENST00000505585	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-376N17.4	Clone_based_vega_gene	ENSG00000249237	tier1	-	-	35	0	0.00	40	33	45.21
SIT1	0	genome.wustl.edu	37	9	35649809	35649809	+	RNA	SNP	G	G	A			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	9	35649809	35649809	G	A	SNP	SIT1	ENST00000474403	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SIT1	HGNC	ENSG00000137078	tier1	-	-	59	0	0.00	91	8	8.08
DNAH14	0	genome.wustl.edu	37	1	225525169	225525169	+	Missense_Mutation	SNP	A	A	G			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	1	225525169	225525169	A	G	SNP	DNAH14	ENST00000430092	human	ensembl	74_37	+1	known	missense	c.10003	p.M3335V	0.997	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Tautomerase/MIF_sf,smart_AAA+_ATPase	-	no_errors	DNAH14	HGNC	ENSG00000185842	tier1	-	-	60	0	0.00	58	53	47.75
ZMYM2	0	genome.wustl.edu	37	13	20532979	20532992	+	Splice_Site	DEL	CGGGTGAGGCTTAT	CGGGTGAGGCTTAT	-			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	CGGGTGAGGCTTAT	CGGGTGAGGCTTAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	13	20532979	20532992	CGGGTGAGGCTTAT	-	DEL	ZMYM2	ENST00000382869	human	ensembl	74_37	+1	known	splice_site_del	c.1+4_17	e1-1	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.966:0.904:0.881:0.710:0.606:0.788	-	-	-	no_errors	ZMYM2	HGNC	ENSG00000121741	tier1			NA	NA	NA	NA	NA	NA
TTN	0	genome.wustl.edu	37	2	179598041	179598041	+	Missense_Mutation	SNP	C	C	T			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	2	179598041	179598041	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.12247	p.D4083N	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	39	0	0.00	51	20	28.17
PSMD5-AS1	0	genome.wustl.edu	37	9	123605712	123605727	+	Splice_Site	DEL	GAAGGCGTGAGTAATA	GAAGGCGTGAGTAATA	-			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	GAAGGCGTGAGTAATA	GAAGGCGTGAGTAATA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	9	123605712	123605727	GAAGGCGTGAGTAATA	-	DEL	PSMD5-AS1	ENST00000442982	human	ensembl	74_37	+1	known	splice_site_del	c.NULL	NULL	0.008:0.012:0.100:0.249:0.297:0.353:0.369:0.392:0.402:0.369:0.354:0.172:0.065:0.010:0.000:0.000	-	-	-	no_errors	PSMD5-AS1	HGNC	ENSG00000226752	tier1			NA	NA	NA	NA	NA	NA
NEU4	0	genome.wustl.edu	37	2	242755771	242755771	+	Silent	SNP	G	G	T			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	2	242755771	242755771	G	T	SNP	NEU4	ENST00000325935	human	ensembl	74_37	+1	known	silent	c.129	p.V43	0.872	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	NEU4	HGNC	ENSG00000204099	tier1	-	-	15	0	0.00	24	8	24.24
SPEG	0	genome.wustl.edu	37	2	220330668	220330669	+	RNA	INS	-	-	GT			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	2	220330668	220330669	-	GT	INS	SPEG	ENST00000462545	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.003	-	-	-	no_errors	SPEG	HGNC	ENSG00000072195	tier1			20	0	0.00	18	4	18.18
COL27A1	0	genome.wustl.edu	37	9	117031280	117031281	+	RNA	INS	-	-	TGGTGT			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	9	117031280	117031281	-	TGGTGT	INS	COL27A1	ENST00000477421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010:0.009	-	-	-	no_errors	COL27A1	HGNC	ENSG00000196739	tier1			NA	NA	NA	NA	NA	NA
CCDC141	0	genome.wustl.edu	37	2	179721056	179721057	+	Frame_Shift_Ins	INS	-	-	T			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	2	179721056	179721057	-	T	INS	CCDC141	ENST00000420890	human	ensembl	74_37	-1	known	frame_shift_ins	c.2793_2792	p.N931fs	0.999:1.000	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CCDC141	HGNC	ENSG00000163492	tier1			56	0	0.00	60	14	18.92
ABCA9	0	genome.wustl.edu	37	17	66988407	66988407	+	Missense_Mutation	SNP	G	G	A			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	17	66988407	66988407	G	A	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	missense	c.3625	p.P1209S	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	tier1	-	-	118	0	0.00	121	66	35.29
LOC100508046	0	genome.wustl.edu	37	14	20010278	20010278	+	RNA	SNP	T	T	G			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	14	20010278	20010278	T	G	SNP	LOC100508046	ENST00000547584	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-244H18.1	Clone_based_vega_gene	ENSG00000258276	tier1	rs201575309	-	18	0	0.00	27	6	18.18
SMOC2	0	genome.wustl.edu	37	6	168999641	168999641	+	Missense_Mutation	SNP	G	G	A			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	6	168999641	168999641	G	A	SNP	SMOC2	ENST00000354536	human	ensembl	74_37	+1	known	missense	c.814	p.V272I	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_EF_hand_dom,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562	tier1	-	-	38	0	0.00	64	38	37.25
WFIKKN1	0	genome.wustl.edu	37	16	683788	683788	+	Missense_Mutation	SNP	G	G	A			TCGA-MJ-A850-01A-11D-A351-09	TCGA-MJ-A850-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d289c714-de51-4192-b307-cf57ec494693	dabaf5ab-f08d-4984-8455-34dbe2b3ee72	16	683788	683788	G	A	SNP	WFIKKN1	ENST00000319070	human	ensembl	74_37	+1	known	missense	c.1378	p.E460K	0.994	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,pfscan_Netrin_domain	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Ig_V-set,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Immunoglobulin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN1	HGNC	ENSG00000127578	tier1	-	-	54	0	0.00	56	62	52.54
