Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCA4	0	genome.wustl.edu	37	1	94497573	94497573	+	Missense_Mutation	SNP	C	C	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	1	94497573	94497573	C	T	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	missense	c.3889	p.V1297I	0.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	tier1	rs200753584	GMAF=0.0005	73	0	0.00	39	16	29.09
EIF3A	0	genome.wustl.edu	37	10	120824963	120824963	+	Missense_Mutation	SNP	G	G	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	10	120824963	120824963	G	T	SNP	EIF3A	ENST00000369144	human	ensembl	74_37	-1	known	missense	c.1070	p.T357K	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581	tier1	-	-	50	0	0.00	34	4	10.53
ATP2A1	0	genome.wustl.edu	37	16	28892332	28892332	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	16	28892332	28892332	G	A	SNP	ATP2A1	ENST00000357084	human	ensembl	74_37	+1	known	missense	c.316	p.V106I	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A1	HGNC	ENSG00000196296	tier1	-	-	148	0	0.00	92	36	27.91
PSPH	0	genome.wustl.edu	37	7	56079283	56079283	+	RNA	DEL	A	A	-			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	7	56079283	56079283	A	-	DEL	PSPH	ENST00000459834	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PSPH	HGNC	ENSG00000146733	tier1			24	0	0.00	13	3	18.75
CDC42EP1	0	genome.wustl.edu	37	22	37964368	37964369	+	In_Frame_Ins	INS	-	-	GGTCCTGCTGCAAACCCCCCGGCCACTACTGCAAACCCCCCAGCACCTGCCGCAACCCCCACG			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	22	37964368	37964369	-	GGTCCTGCTGCAAACCCCCCGGCCACTACTGCAAACCCCCCAGCACCTGCCGCAACCCCCACG	INS	CDC42EP1	ENST00000249014	human	ensembl	74_37	+1	known	in_frame_ins	c.717_718	p.243in_frame_insNPPATTANPPAPAATPTGPAA	0.106:0.095	NULL	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	tier1			NA	NA	NA	NA	NA	NA
DAAM2	0	genome.wustl.edu	37	6	39846225	39846225	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	6	39846225	39846225	G	A	SNP	DAAM2	ENST00000274867	human	ensembl	74_37	+1	known	missense	c.1406	p.C469Y	1.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DAAM2	HGNC	ENSG00000146122	tier1	-	-	59	0	0.00	39	4	9.30
ZNF273	0	genome.wustl.edu	37	7	64389085	64389085	+	Missense_Mutation	SNP	G	G	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	7	64389085	64389085	G	T	SNP	ZNF273	ENST00000476120	human	ensembl	74_37	+1	known	missense	c.1379	p.C460F	0.549	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF273	HGNC	ENSG00000198039	tier1	-	-	26	0	0.00	35	4	10.26
IRAK4	0	genome.wustl.edu	37	12	44176276	44176276	+	Missense_Mutation	SNP	A	A	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	12	44176276	44176276	A	T	SNP	IRAK4	ENST00000448290	human	ensembl	74_37	+1	known	missense	c.1108	p.I370F	0.999	pirsf_IL-1_rcpt-assoc_kin4,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pirsf_IL-1_rcpt-assoc_kin4,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IRAK4	HGNC	ENSG00000198001	tier1	-	-	64	0	0.00	40	14	25.45
MED25	0	genome.wustl.edu	37	19	50339495	50339495	+	Missense_Mutation	SNP	G	G	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	19	50339495	50339495	G	T	SNP	MED25	ENST00000312865	human	ensembl	74_37	+1	known	missense	c.1978	p.V660L	1.000	NULL	pfam_Mediator_Med25_VWA,pfam_Mediator_Med25,pfam_Mediator_Med25_SD1,pfam_Mediator_Med25_NR-box	-	no_errors	MED25	HGNC	ENSG00000104973	tier1	-	-	31	0	0.00	22	4	15.38
MUC4	0	genome.wustl.edu	37	3	195505925	195505925	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	3	195505925	195505925	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.12526	p.P4176S	0.013	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	63	0	0.00	45	6	11.76
MIR4477B	0	genome.wustl.edu	37	9	68415370	68415370	+	RNA	DEL	G	G	-			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	9	68415370	68415370	G	-	DEL	MIR4477B	ENST00000581659	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.271	-	-	-	no_errors	MIR4477B	HGNC	ENSG00000266017	tier1			8	0	0.00	5	3	37.50
HNF4G	0	genome.wustl.edu	37	8	76472645	76472645	+	Missense_Mutation	SNP	C	C	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	8	76472645	76472645	C	T	SNP	HNF4G	ENST00000396423	human	ensembl	74_37	+1	known	missense	c.1160	p.T387I	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4G	HGNC	ENSG00000164749	tier1	-	-	62	0	0.00	31	19	38.00
PRICKLE2	0	genome.wustl.edu	37	3	64143025	64143025	+	Missense_Mutation	SNP	T	T	C			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	3	64143025	64143025	T	C	SNP	PRICKLE2	ENST00000295902	human	ensembl	74_37	-1	known	missense	c.413	p.N138S	0.973	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637	tier1	-	-	24	0	0.00	14	11	44.00
USP48	0	genome.wustl.edu	37	1	22033385	22033386	+	Frame_Shift_Ins	INS	-	-	A			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	1	22033385	22033386	-	A	INS	USP48	ENST00000529637	human	ensembl	74_37	-1	novel	frame_shift_ins	c.1976_1975	p.S659fs	0.000:0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	tier1			33	0	0.00	35	4	10.26
ADAM33	0	genome.wustl.edu	37	20	3650540	3650541	+	RNA	INS	-	-	CACCACC			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	20	3650540	3650541	-	CACCACC	INS	ADAM33	ENST00000483362	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ADAM33	HGNC	ENSG00000149451	tier1			NA	NA	NA	NA	NA	NA
MIR490	0	genome.wustl.edu	37	7	136848888	136848888	+	RNA	SNP	G	G	C			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	7	136848888	136848888	G	C	SNP	MIR490	ENST00000425981	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	hsa-mir-490	miRBase	ENSG00000234352	tier1	-	-	37	0	0.00	38	16	29.63
TSC2	0	genome.wustl.edu	37	16	2110734	2110734	+	Frame_Shift_Del	DEL	A	A	-			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	16	2110734	2110734	A	-	DEL	TSC2	ENST00000219476	human	ensembl	74_37	+1	known	frame_shift_del	c.1039	p.K347fs	1.000	pfam_Tuberin_N,superfamily_ARM-type_fold	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom,prints_Tuberin	-	no_errors	TSC2	HGNC	ENSG00000103197	tier1			106	0	0.00	47	28	37.33
BAZ2B	0	genome.wustl.edu	37	2	160317691	160317691	+	RNA	DEL	T	T	-			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	2	160317691	160317691	T	-	DEL	BAZ2B	ENST00000483316	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	BAZ2B	HGNC	ENSG00000123636	tier1			25	0	0.00	19	3	13.64
BPIFB4	0	genome.wustl.edu	37	20	31677358	31677358	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	20	31677358	31677358	G	A	SNP	BPIFB4	ENST00000375483	human	ensembl	74_37	+1	known	missense	c.1045	p.V349M	1.000	superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB4	HGNC	ENSG00000186191	tier1	-	-	90	0	0.00	52	18	25.71
INTS3	0	genome.wustl.edu	37	1	153719547	153719547	+	Splice_Site	SNP	G	G	A			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	1	153719547	153719547	G	A	SNP	INTS3	ENST00000318967	human	ensembl	74_37	+1	known	splice_site	c.432+1	e4+1	1.000	-	-	-	no_errors	INTS3	HGNC	ENSG00000143624	tier1	-	-	32	0	0.00	18	7	28.00
TYMS	0	genome.wustl.edu	37	18	672908	672908	+	Missense_Mutation	SNP	G	G	C			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	18	672908	672908	G	C	SNP	TYMS	ENST00000323274	human	ensembl	74_37	+1	known	missense	c.853	p.V285L	1.000	pfam_Thymidylate_synthase,superfamily_Thymidate_synth/dCMP_Mease,tigrfam_Thymidylate_synthase	pfam_Thymidylate_synthase,superfamily_Thymidate_synth/dCMP_Mease,prints_Thymidylate_synthase,tigrfam_Thymidylate_synthase	-	no_errors	TYMS	HGNC	ENSG00000176890	tier1	-	-	62	0	0.00	23	14	37.84
FMNL3	0	genome.wustl.edu	37	12	50045023	50045023	+	Missense_Mutation	SNP	G	G	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	12	50045023	50045023	G	T	SNP	FMNL3	ENST00000293590	human	ensembl	74_37	-1	known	missense	c.1725	p.N575K	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL3	HGNC	ENSG00000161791	tier1	-	-	64	0	0.00	36	4	10.00
NEB	0	genome.wustl.edu	37	2	152520327	152520327	+	Missense_Mutation	SNP	C	C	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	2	152520327	152520327	C	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.5498	p.G1833D	1.000	pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091	tier1	-	-	75	0	0.00	57	5	8.06
ITGA6	0	genome.wustl.edu	37	2	173355851	173355865	+	Splice_Site	DEL	GTAAGTATTTTTCAA	GTAAGTATTTTTCAA	-			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	GTAAGTATTTTTCAA	GTAAGTATTTTTCAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	2	173355851	173355865	GTAAGTATTTTTCAA	-	DEL	ITGA6	ENST00000264106	human	ensembl	74_37	+1	known	splice_site_del	c.2895+1_2895+1	e22+1	1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:0.999:0.998:0.998:1.000:0.999:0.641:0.547	-	-	-	no_errors	ITGA6	HGNC	ENSG00000091409	tier1			NA	NA	NA	NA	NA	NA
WDR11	0	genome.wustl.edu	37	10	122648750	122648751	+	RNA	INS	-	-	TTTTGTTTTG			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	10	122648750	122648751	-	TTTTGTTTTG	INS	WDR11	ENST00000604509	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024:0.006	-	-	-	no_errors	WDR11	HGNC	ENSG00000120008	tier1			NA	NA	NA	NA	NA	NA
CCDC169-SOHLH2	0	genome.wustl.edu	37	13	36766016	36766016	+	Missense_Mutation	SNP	G	G	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	13	36766016	36766016	G	T	SNP	CCDC169-SOHLH2	ENST00000511166	human	ensembl	74_37	-1	known	missense	c.677	p.A226E	0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	CCDC169-SOHLH2	HGNC	ENSG00000250709	tier1	-	-	46	0	0.00	41	4	8.89
PSMC2	0	genome.wustl.edu	37	7	102996218	102996218	+	Nonsense_Mutation	SNP	G	G	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	7	102996218	102996218	G	T	SNP	PSMC2	ENST00000292644	human	ensembl	74_37	+1	known	nonsense	c.268	p.E90*	1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC2	HGNC	ENSG00000161057	tier1	-	-	49	0	0.00	21	3	12.50
RRP36	0	genome.wustl.edu	37	6	42996963	42996963	+	Missense_Mutation	SNP	G	G	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	6	42996963	42996963	G	T	SNP	RRP36	ENST00000244496	human	ensembl	74_37	+1	known	missense	c.777	p.E259D	0.485	NULL	pfam_DUF947	-	no_errors	RRP36	HGNC	ENSG00000124541	tier1	-	-	51	0	0.00	36	4	10.00
PLXNA2	0	genome.wustl.edu	37	1	208199997	208199998	+	RNA	INS	-	-	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	1	208199997	208199998	-	T	INS	PLXNA2	ENST00000483048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PLXNA2	HGNC	ENSG00000076356	tier1			11	0	0.00	13	4	23.53
S100A13	0	genome.wustl.edu	37	1	153598961	153598961	+	RNA	SNP	G	G	T			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	1	153598961	153598961	G	T	SNP	S100A13	ENST00000476133	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	S100A13	HGNC	ENSG00000189171	tier1	-	-	43	0	0.00	44	4	8.33
TESK2	0	genome.wustl.edu	37	1	45809610	45809610	+	RNA	DEL	A	A	-			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	1	45809610	45809610	A	-	DEL	TESK2	ENST00000486676	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.794	-	-	-	no_errors	TESK2	HGNC	ENSG00000070759	tier1			15	0	0.00	11	2	15.38
SPATA1	0	genome.wustl.edu	37	1	85018772	85018772	+	RNA	DEL	A	A	-			TCGA-MO-A47P-01A-11D-A24N-09	TCGA-MO-A47P-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	09612017-93ca-4607-bf05-70992083aaeb	de9db61f-bc21-4cce-8ad3-81f385335d8f	1	85018772	85018772	A	-	DEL	SPATA1	ENST00000460286	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432	tier1			20	0	0.00	20	5	20.00
