Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ELTD1	0	genome.wustl.edu	37	1	79402057	79402057	+	Missense_Mutation	SNP	T	T	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	1	79402057	79402057	T	C	SNP	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	missense	c.800	p.H267R	0.976	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	tier1	-	-	53	0	0.00	10	9	47.37
ACADVL	0	genome.wustl.edu	37	17	7123240	7123241	+	RNA	INS	-	-	GGGCGTGCAGGACGC			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	17	7123240	7123241	-	GGGCGTGCAGGACGC	INS	ACADVL	ENST00000577857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ACADVL	HGNC	ENSG00000072778	tier1			NA	NA	NA	NA	NA	NA
SUMO3	0	genome.wustl.edu	37	21	46233792	46233792	+	Missense_Mutation	SNP	C	C	G			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	21	46233792	46233792	C	G	SNP	SUMO3	ENST00000411651	human	ensembl	74_37	-1	known	missense	c.249	p.Q83H	0.001	NULL	pfam_Rad60/SUMO_like,pfscan_Ubiquitin_supergroup	-	no_errors	SUMO3	HGNC	ENSG00000184900	tier1	-	-	27	0	0.00	29	17	36.96
BEST2	0	genome.wustl.edu	37	19	12868642	12868642	+	Silent	SNP	G	G	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	19	12868642	12868642	G	T	SNP	BEST2	ENST00000042931	human	ensembl	74_37	+1	known	silent	c.1281	p.A427	0.686	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST2	HGNC	ENSG00000039987	tier1	-	-	34	0	0.00	29	4	12.12
ENSG00000237357	0	genome.wustl.edu	37	9	44403067	44403067	+	RNA	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	9	44403067	44403067	G	A	SNP	ENSG00000237357	ENST00000425309	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.349	-	-	-	no_errors	RP11-475I24.3	Clone_based_vega_gene	ENSG00000237357	tier1	-	-	62	0	0.00	26	20	42.55
ENO4	0	genome.wustl.edu	37	10	118638849	118638849	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	10	118638849	118638849	G	A	SNP	ENO4	ENST00000341276	human	ensembl	74_37	+1	known	missense	c.1594	p.D532N	1.000	pfam_Enolase_C	pfam_Enolase_C,pfam_Enolase_N	-	no_errors	ENO4	HGNC	ENSG00000188316	tier1	-	-	49	0	0.00	36	4	10.00
DNAH17	0	genome.wustl.edu	37	17	76567092	76567092	+	Missense_Mutation	SNP	C	C	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	17	76567092	76567092	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	missense	c.856	p.V286M	0.019	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	tier1	-	-	53	0	0.00	30	15	33.33
MT-RNR2	0	genome.wustl.edu	37	MT	3063	3063	+	RNA	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	MT	3063	3063	G	A	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	79	0	0.00	17	2	10.53
PRX	0	genome.wustl.edu	37	19	40902642	40902642	+	Silent	SNP	C	C	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	19	40902642	40902642	C	T	SNP	PRX	ENST00000324001	human	ensembl	74_37	-1	known	silent	c.1617	p.P539	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	tier1	-	-	59	0	0.00	47	25	34.25
CNGA3	0	genome.wustl.edu	37	2	99012463	99012463	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	2	99012463	99012463	G	A	SNP	CNGA3	ENST00000272602	human	ensembl	74_37	+1	known	missense	c.830	p.R277H	1.000	pfam_Ion_trans_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191	tier1	-	-	47	0	0.00	26	21	44.68
USP32P2	0	genome.wustl.edu	37	17	18414858	18414858	+	RNA	SNP	A	A	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	17	18414858	18414858	A	T	SNP	USP32P2	ENST00000412260	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.899	-	-	-	no_errors	USP32P2	HGNC	ENSG00000233327	tier1	-	-	55	0	0.00	29	8	21.62
CASP4	0	genome.wustl.edu	37	11	104819368	104819368	+	Missense_Mutation	SNP	C	C	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	11	104819368	104819368	C	T	SNP	CASP4	ENST00000444739	human	ensembl	74_37	-1	known	missense	c.817	p.A273T	0.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP4	HGNC	ENSG00000196954	tier1	-	-	51	0	0.00	18	7	28.00
HNRNPR	0	genome.wustl.edu	37	1	23636715	23636715	+	RNA	SNP	T	T	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	1	23636715	23636715	T	C	SNP	HNRNPR	ENST00000476660	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HNRNPR	HGNC	ENSG00000125944	tier1	-	-	18	0	0.00	5	4	44.44
FAM200B	0	genome.wustl.edu	37	4	15690018	15690018	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	4	15690018	15690018	G	A	SNP	FAM200B	ENST00000422728	human	ensembl	74_37	+1	putative	missense	c.1418	p.R473K	0.704	superfamily_PAH	superfamily_RNaseH-like_dom,superfamily_PAH	-	no_errors	FAM200B	HGNC	ENSG00000237765	tier1	-	-	24	0	0.00	8	5	38.46
ANO10	0	genome.wustl.edu	37	3	43596888	43596888	+	Frame_Shift_Del	DEL	A	A	-			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	3	43596888	43596888	A	-	DEL	ANO10	ENST00000292246	human	ensembl	74_37	-1	known	frame_shift_del	c.1550	p.L517fs	0.952	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO10	HGNC	ENSG00000160746	tier1			42	0	0.00	13	2	13.33
PHLDB2	0	genome.wustl.edu	37	3	111681011	111681011	+	Missense_Mutation	SNP	C	C	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	3	111681011	111681011	C	T	SNP	PHLDB2	ENST00000393925	human	ensembl	74_37	+1	known	missense	c.2929	p.R977C	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	tier1	-	-	50	0	0.00	12	10	45.45
DCLRE1B	0	genome.wustl.edu	37	1	114455666	114455666	+	RNA	SNP	T	T	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	1	114455666	114455666	T	C	SNP	DCLRE1B	ENST00000466480	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DCLRE1B	HGNC	ENSG00000118655	tier1	-	-	49	0	0.00	47	12	20.34
C8orf76	0	genome.wustl.edu	37	8	124253560	124253560	+	Silent	SNP	G	G	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	8	124253560	124253560	G	C	SNP	C8orf76	ENST00000276704	human	ensembl	74_37	-1	known	silent	c.27	p.G9	0.603	NULL	NULL	-	no_errors	C8orf76	HGNC	ENSG00000189376	tier1	-	-	16	0	0.00	9	6	40.00
ENTHD1	0	genome.wustl.edu	37	22	40139965	40139965	+	Nonsense_Mutation	SNP	C	C	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	22	40139965	40139965	C	A	SNP	ENTHD1	ENST00000325157	human	ensembl	74_37	-1	known	nonsense	c.1543	p.E515*	0.002	NULL	pfam_Epsin_dom_N,pfam_VHS,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	ENTHD1	HGNC	ENSG00000176177	tier1	-	-	41	0	0.00	21	14	40.00
MT-CO2	0	genome.wustl.edu	37	MT	8199	8199	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	MT	8199	8199	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	+1	known	missense	c.614	p.S205N	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712	tier1	-	-	36	0	0.00	5	4	44.44
SMPDL3B	0	genome.wustl.edu	37	1	28261658	28261659	+	RNA	INS	-	-	G			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	1	28261658	28261659	-	G	INS	SMPDL3B	ENST00000466793	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.013	-	-	-	no_errors	SMPDL3B	HGNC	ENSG00000130768	tier1			22	0	0.00	22	2	8.33
FAM91A1	0	genome.wustl.edu	37	8	124796721	124796721	+	Nonsense_Mutation	SNP	G	G	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	8	124796721	124796721	G	T	SNP	FAM91A1	ENST00000334705	human	ensembl	74_37	+1	known	nonsense	c.715	p.E239*	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853	tier1	-	-	51	0	0.00	47	11	18.97
F2RL1	0	genome.wustl.edu	37	5	76128687	76128687	+	Silent	SNP	G	G	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	5	76128687	76128687	G	T	SNP	F2RL1	ENST00000296677	human	ensembl	74_37	+1	known	silent	c.255	p.V85	0.013	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_Pro_rcpt_2,prints_Protea_act_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	F2RL1	HGNC	ENSG00000164251	tier1	-	-	55	0	0.00	41	4	8.89
FARP2	0	genome.wustl.edu	37	2	242371123	242371123	+	Missense_Mutation	SNP	G	G	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	2	242371123	242371123	G	T	SNP	FARP2	ENST00000264042	human	ensembl	74_37	+1	known	missense	c.801	p.W267C	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FARP2	HGNC	ENSG00000006607	tier1	-	-	59	0	0.00	36	4	10.00
NCAPD2	0	genome.wustl.edu	37	12	6626972	6626972	+	Nonsense_Mutation	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	12	6626972	6626972	G	A	SNP	NCAPD2	ENST00000315579	human	ensembl	74_37	+1	known	nonsense	c.1436	p.W479*	1.000	superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292	tier1	-	-	29	0	0.00	32	4	11.11
ASXL2	0	genome.wustl.edu	37	2	25966595	25966595	+	Missense_Mutation	SNP	A	A	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	2	25966595	25966595	A	T	SNP	ASXL2	ENST00000435504	human	ensembl	74_37	-1	known	missense	c.2611	p.S871T	0.004	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	tier1	-	-	45	0	0.00	70	19	21.35
HEBP1	0	genome.wustl.edu	37	12	13128328	13128328	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	12	13128328	13128328	G	A	SNP	HEBP1	ENST00000014930	human	ensembl	74_37	-1	known	missense	c.484	p.R162W	0.935	pfam_SOUL_haem-bd,superfamily_Reg_factor_effector_dom	pfam_SOUL_haem-bd,superfamily_Reg_factor_effector_dom	-	no_errors	HEBP1	HGNC	ENSG00000013583	tier1	-	-	42	0	0.00	53	14	20.90
KRTAP4-7	0	genome.wustl.edu	37	17	39240782	39240796	+	In_Frame_Del	DEL	CTGCTGCCGCCCCAG	CTGCTGCCGCCCCAG	-			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	CTGCTGCCGCCCCAG	CTGCTGCCGCCCCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	17	39240782	39240796	CTGCTGCCGCCCCAG	-	DEL	KRTAP4-7	ENST00000391417	human	ensembl	74_37	+1	known	in_frame_del	c.324_338	p.PSCCR112in_frame_del	0.989:1.000:1.000:1.000:0.917:0.903:0.802:0.000:0.000:0.000:0.007:0.640:0.619:0.629:0.687	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-7	HGNC	ENSG00000240871	tier1			NA	NA	NA	NA	NA	NA
OSCP1	0	genome.wustl.edu	37	1	36888969	36888969	+	Silent	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	1	36888969	36888969	G	A	SNP	OSCP1	ENST00000235532	human	ensembl	74_37	-1	known	silent	c.615	p.L205	1.000	NULL	pfam_OSCP1	-	no_errors	OSCP1	HGNC	ENSG00000116885	tier1	-	-	45	0	0.00	30	4	11.76
LRFN4	0	genome.wustl.edu	37	11	66625762	66625762	+	Missense_Mutation	SNP	G	G	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	11	66625762	66625762	G	T	SNP	LRFN4	ENST00000309602	human	ensembl	74_37	+1	known	missense	c.547	p.A183S	0.640	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN4	HGNC	ENSG00000173621	tier1	-	-	52	0	0.00	45	4	8.16
KMT2E	0	genome.wustl.edu	37	7	104747888	104747889	+	Frame_Shift_Ins	INS	-	-	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	7	104747888	104747889	-	A	INS	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	frame_shift_ins	c.2984_2985	p.T997fs	1.000:1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483	tier1			34	0	0.00	21	9	30.00
ENSG00000237281	0	genome.wustl.edu	37	2	219215890	219215890	+	RNA	DEL	T	T	-			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	2	219215890	219215890	T	-	DEL	ENSG00000237281	ENST00000411433	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.199	-	-	-	no_errors	AC021016.8	Clone_based_vega_gene	ENSG00000237281	tier1			37	0	0.00	27	3	10.00
CCND1	0	genome.wustl.edu	37	11	69466030	69466030	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	11	69466030	69466030	G	A	SNP	CCND1	ENST00000227507	human	ensembl	74_37	+1	known	missense	c.868	p.V290M	1.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND1	HGNC	ENSG00000110092	tier1	-	-	16	0	0.00	18	11	37.93
CIITA	0	genome.wustl.edu	37	16	11016348	11016348	+	Splice_Site	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	16	11016348	11016348	G	A	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	splice_site	c.3317+1	e18+1	1.000	-	-	-	no_errors	CIITA	HGNC	ENSG00000179583	tier1	-	-	63	0	0.00	74	28	27.45
DCT	0	genome.wustl.edu	37	13	95118850	95118850	+	Missense_Mutation	SNP	G	G	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	13	95118850	95118850	G	T	SNP	DCT	ENST00000446125	human	ensembl	74_37	-1	known	missense	c.658	p.H220N	1.000	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166	tier1	-	-	41	0	0.00	28	4	12.50
SF3B3	0	genome.wustl.edu	37	16	70595541	70595541	+	Silent	SNP	C	C	G			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	16	70595541	70595541	C	G	SNP	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	silent	c.2142	p.A714	1.000	superfamily_WD40_repeat_dom	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091	tier1	-	-	45	0	0.00	10	11	52.38
INTS9	0	genome.wustl.edu	37	8	28651360	28651360	+	Missense_Mutation	SNP	T	T	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	8	28651360	28651360	T	C	SNP	INTS9	ENST00000521022	human	ensembl	74_37	-1	known	missense	c.1001	p.N334S	1.000	pfam_Beta_Casp	pfam_Beta_Casp	-	no_errors	INTS9	HGNC	ENSG00000104299	tier1	-	-	20	0	0.00	18	9	33.33
WDFY3	0	genome.wustl.edu	37	4	85704202	85704202	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	4	85704202	85704202	G	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.4088	p.A1363V	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	tier1	-	-	53	0	0.00	46	4	8.00
NUP205	0	genome.wustl.edu	37	7	135302372	135302372	+	Missense_Mutation	SNP	C	C	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	7	135302372	135302372	C	T	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	missense	c.3713	p.A1238V	1.000	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561	tier1	-	-	46	0	0.00	41	11	21.15
ASPRV1	0	genome.wustl.edu	37	2	70188027	70188027	+	Missense_Mutation	SNP	T	T	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	2	70188027	70188027	T	C	SNP	ASPRV1	ENST00000320256	human	ensembl	74_37	-1	known	missense	c.794	p.K265R	0.999	pfam_Peptidase_aspartic_DDI1-type,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,pfscan_Peptidase_A2_cat	pfam_Peptidase_aspartic_DDI1-type,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,pfscan_Peptidase_A2_cat	-	no_errors	ASPRV1	HGNC	ENSG00000244617	tier1	-	-	36	0	0.00	47	14	22.58
KIT	0	genome.wustl.edu	37	4	55593603	55593616	+	Frame_Shift_Del	DEL	TGGAAGGTTGTTGA	TGGAAGGTTGTTGA	-			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	TGGAAGGTTGTTGA	TGGAAGGTTGTTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	4	55593603	55593616	TGGAAGGTTGTTGA	-	DEL	KIT	ENST00000288135	human	ensembl	74_37	+1	known	frame_shift_del	c.1669_1682	p.W557fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.959:0.999:0.998:0.001:1.000:1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404	tier1			NA	NA	NA	NA	NA	NA
BRCA2	0	genome.wustl.edu	37	13	32903601	32903601	+	Frame_Shift_Del	DEL	A	A	-			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	13	32903601	32903601	A	-	DEL	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	frame_shift_del	c.653	p.T219fs	0.012	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	tier1			45	0	0.00	17	10	37.04
COX10	0	genome.wustl.edu	37	17	14110294	14110294	+	Missense_Mutation	SNP	G	G	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	17	14110294	14110294	G	C	SNP	COX10	ENST00000261643	human	ensembl	74_37	+1	known	missense	c.1096	p.V366L	0.063	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695	tier1	-	-	46	0	0.00	49	15	23.44
PDE4D	0	genome.wustl.edu	37	5	59284463	59284463	+	Missense_Mutation	SNP	A	A	G			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	5	59284463	59284463	A	G	SNP	PDE4D	ENST00000502484	human	ensembl	74_37	-1	known	missense	c.124	p.S42P	1.000	NULL	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448	tier1	-	-	87	0	0.00	101	34	25.19
ANO4	0	genome.wustl.edu	37	12	101295493	101295493	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	12	101295493	101295493	G	A	SNP	ANO4	ENST00000538618	human	ensembl	74_37	+1	known	missense	c.428	p.R143H	0.993	NULL	NULL	-	no_errors	ANO4	HGNC	ENSG00000151572	tier1	-	-	32	0	0.00	39	6	13.33
WNT9A	0	genome.wustl.edu	37	1	228111953	228111954	+	Frame_Shift_Ins	INS	-	-	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	1	228111953	228111954	-	C	INS	WNT9A	ENST00000272164	human	ensembl	74_37	-1	known	frame_shift_ins	c.501_500	p.C168fs	1.000:1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt9a	-	no_errors	WNT9A	HGNC	ENSG00000143816	tier1			69	0	0.00	64	29	31.18
PIK3CA	0	genome.wustl.edu	37	3	178947119	178947119	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	3	178947119	178947119	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.2555	p.R852Q	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	tier1	rs199943173	-	75	0	0.00	23	17	42.50
C1orf168	0	genome.wustl.edu	37	1	57233543	57233543	+	Missense_Mutation	SNP	C	C	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	1	57233543	57233543	C	T	SNP	C1orf168	ENST00000343433	human	ensembl	74_37	-1	known	missense	c.1022	p.G341D	0.999	NULL	superfamily_SH3_domain	-	no_errors	C1orf168	HGNC	ENSG00000187889	tier1	-	-	40	0	0.00	18	4	18.18
NEB	0	genome.wustl.edu	37	2	152581369	152581369	+	Splice_Site	SNP	A	A	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	2	152581369	152581369	A	C	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	splice_site	c.507+2	e5+2	1.000	-	-	-	no_errors	NEB	HGNC	ENSG00000183091	tier1	-	-	101	0	0.00	83	63	42.86
ENSG00000215958	0	genome.wustl.edu	37	15	70077781	70077782	+	RNA	INS	-	-	TGTGTA			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	15	70077781	70077782	-	TGTGTA	INS	ENSG00000215958	ENST00000401139	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.191:0.184	-	-	-	no_errors	AC021818.1	Clone_based_ensembl_gene	ENSG00000215958	tier1			NA	NA	NA	NA	NA	NA
SOX9	0	genome.wustl.edu	37	17	70119794	70119794	+	Missense_Mutation	SNP	C	C	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	17	70119794	70119794	C	A	SNP	SOX9	ENST00000245479	human	ensembl	74_37	+1	known	missense	c.796	p.P266T	1.000	NULL	pfam_Sox_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX9	HGNC	ENSG00000125398	tier1	-	-	40	0	0.00	50	5	9.09
DOCK11	0	genome.wustl.edu	37	X	117819720	117819720	+	Frame_Shift_Del	DEL	G	G	-			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	X	117819720	117819720	G	-	DEL	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	frame_shift_del	c.6172	p.G2058fs	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	tier1			80	0	0.00	15	2	11.76
TMEM57	0	genome.wustl.edu	37	1	25815701	25815701	+	Nonsense_Mutation	SNP	G	G	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	1	25815701	25815701	G	T	SNP	TMEM57	ENST00000374343	human	ensembl	74_37	+1	known	nonsense	c.1534	p.E512*	1.000	pfam_Macoilin,superfamily_Prefoldin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	tier1	-	-	20	0	0.00	11	4	26.67
MICAL3	0	genome.wustl.edu	37	22	18310466	18310466	+	Missense_Mutation	SNP	C	C	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	22	18310466	18310466	C	A	SNP	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	missense	c.3137	p.R1046L	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	tier1	-	-	120	0	0.00	86	29	25.22
FOXD4L1	0	genome.wustl.edu	37	2	114257443	114257443	+	Missense_Mutation	SNP	A	A	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	2	114257443	114257443	A	C	SNP	FOXD4L1	ENST00000306507	human	ensembl	74_37	+1	known	missense	c.610	p.K204Q	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L1	HGNC	ENSG00000184492	tier1	-	-	48	0	0.00	64	8	11.11
CTC1	0	genome.wustl.edu	37	17	8134669	8134669	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	17	8134669	8134669	G	A	SNP	CTC1	ENST00000315684	human	ensembl	74_37	-1	known	missense	c.2594	p.S865F	0.011	NULL	NULL	-	no_errors	CTC1	HGNC	ENSG00000178971	tier1	-	-	41	0	0.00	29	14	32.56
LINC00408	0	genome.wustl.edu	37	13	19480667	19480667	+	RNA	SNP	C	C	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	13	19480667	19480667	C	T	SNP	LINC00408	ENST00000447784	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.065	-	-	-	no_errors	LINC00408	HGNC	ENSG00000226250	tier1	-	-	14	0	0.00	2	11	84.62
PRX	0	genome.wustl.edu	37	19	40900180	40900182	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	19	40900180	40900182	TCC	-	DEL	PRX	ENST00000324001	human	ensembl	74_37	-1	known	in_frame_del	c.4079_4077	p.E1361in_frame_del	0.908:0.904:0.008	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	tier1			18	0	0.00	23	4	14.81
COA3	0	genome.wustl.edu	37	17	40950489	40950489	+	Missense_Mutation	SNP	T	T	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	17	40950489	40950489	T	C	SNP	COA3	ENST00000328434	human	ensembl	74_37	-1	known	missense	c.211	p.I71V	1.000	pfam_Coiled-coil_56	pfam_Coiled-coil_56	-	no_errors	COA3	HGNC	ENSG00000183978	tier1	-	-	52	0	0.00	36	13	26.53
KIT	0	genome.wustl.edu	37	4	55593601	55593601	+	Frame_Shift_Del	DEL	A	A	-			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	4	55593601	55593601	A	-	DEL	KIT	ENST00000288135	human	ensembl	74_37	+1	known	frame_shift_del	c.1667	p.Q556fs	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404	tier1			30	0	0.00	24	13	35.14
ENSG00000220891	0	genome.wustl.edu	37	22	22906072	22906072	+	Missense_Mutation	SNP	G	G	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	22	22906072	22906072	G	T	SNP	ENSG00000220891	ENST00000407120	human	ensembl	74_37	+1	putative	missense	c.151	p.V51L	0.043	NULL	NULL	-	no_errors	LL22NC03-63E9.3	Clone_based_vega_gene	ENSG00000220891	tier1	-	-	57	0	0.00	43	5	10.42
DCHS2	0	genome.wustl.edu	37	4	155219572	155219572	+	Missense_Mutation	SNP	T	T	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	4	155219572	155219572	T	C	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.4529	p.N1510S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	tier1	-	-	75	0	0.00	62	31	33.33
OR52L1	0	genome.wustl.edu	37	11	6007874	6007874	+	Missense_Mutation	SNP	G	G	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	11	6007874	6007874	G	T	SNP	OR52L1	ENST00000332249	human	ensembl	74_37	-1	known	missense	c.287	p.A96E	0.821	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52L1	HGNC	ENSG00000183313	tier1	-	-	86	0	0.00	73	32	30.48
TUBA3C	0	genome.wustl.edu	37	13	19753654	19753654	+	Missense_Mutation	SNP	T	T	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	13	19753654	19753654	T	C	SNP	TUBA3C	ENST00000400113	human	ensembl	74_37	-1	known	missense	c.53	p.N18S	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033	tier1	-	-	93	0	0.00	34	31	47.69
ENSG00000237357	0	genome.wustl.edu	37	9	44403059	44403059	+	Splice_Site	SNP	G	G	C			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	9	44403059	44403059	G	C	SNP	ENSG00000237357	ENST00000425309	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.388	-	-	-	no_errors	RP11-475I24.3	Clone_based_vega_gene	ENSG00000237357	tier1	-	-	59	0	0.00	27	21	43.75
ENSG00000229334	0	genome.wustl.edu	37	3	194353786	194353786	+	RNA	SNP	C	C	G			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	3	194353786	194353786	C	G	SNP	ENSG00000229334	ENST00000447139	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	AC046143.3	Clone_based_vega_gene	ENSG00000229334	tier1	rs1675956	-	12	0	0.00	15	5	25.00
SERINC4	0	genome.wustl.edu	37	15	44087708	44087708	+	Missense_Mutation	SNP	G	G	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	15	44087708	44087708	G	T	SNP	SERINC4	ENST00000249714	human	ensembl	74_37	-1	known	missense	c.489	p.D163E	0.304	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC4	HGNC	ENSG00000184716	tier1	-	-	47	0	0.00	39	4	9.30
FLG	0	genome.wustl.edu	37	1	152281987	152281987	+	Missense_Mutation	SNP	G	G	A			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	1	152281987	152281987	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.5375	p.S1792F	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	tier1	-	-	188	1	0.53	142	57	28.36
PSG8	0	genome.wustl.edu	37	19	43262153	43262153	+	Splice_Site	SNP	C	C	T			TCGA-MO-A47R-01A-11D-A24N-09	TCGA-MO-A47R-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7a5d3b6b-be5a-4e55-9255-32a069b8af3d	40925959-5b66-45a5-a8a2-61ee7e67b084	19	43262153	43262153	C	T	SNP	PSG8	ENST00000306511	human	ensembl	74_37	-1	known	splice_site	c.709+1	e3+1	0.059	-	-	-	no_errors	PSG8	HGNC	ENSG00000124467	tier1	-	-	171	0	0.00	127	56	30.60
