Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
OR7A17	0	genome.wustl.edu	37	19	14992099	14992099	+	Missense_Mutation	SNP	C	C	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	19	14992099	14992099	C	A	SNP	OR7A17	ENST00000327462	human	ensembl	74_37	-1	known	missense	c.69	p.L23F	0.184	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7A17	HGNC	ENSG00000185385	tier1	-	-	70	0	0.00	18	84	82.35
CCDC178	0	genome.wustl.edu	37	18	30517983	30517983	+	Missense_Mutation	SNP	C	C	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	18	30517983	30517983	C	T	SNP	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	missense	c.2668	p.D890N	0.943	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960	tier1	rs200567065	GMAF=0.0005	48	0	0.00	31	9	22.50
MYO15A	0	genome.wustl.edu	37	17	18082113	18082113	+	Missense_Mutation	SNP	C	C	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	17	18082113	18082113	C	T	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.10522	p.H3508Y	1.000	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	tier1	-	-	38	0	0.00	53	17	24.29
PLXNB3	0	genome.wustl.edu	37	X	153044436	153044436	+	Missense_Mutation	SNP	T	T	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	X	153044436	153044436	T	A	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	missense	c.5741	p.L1914Q	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753	tier1	-	-	74	0	0.00	52	34	39.53
RBM6	0	genome.wustl.edu	37	3	50004793	50004794	+	RNA	INS	-	-	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	3	50004793	50004794	-	A	INS	RBM6	ENST00000488807	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	RBM6	HGNC	ENSG00000004534	tier1			24	0	0.00	18	3	14.29
MEFV	0	genome.wustl.edu	37	16	3298968	3298968	+	Silent	SNP	G	G	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	16	3298968	3298968	G	A	SNP	MEFV	ENST00000219596	human	ensembl	74_37	-1	known	silent	c.1297	p.L433	0.000	NULL	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_DEATH-like_dom,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	tier1	-	-	25	0	0.00	10	10	50.00
C8orf12	0	genome.wustl.edu	37	8	11295631	11295631	+	Missense_Mutation	SNP	G	G	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	8	11295631	11295631	G	T	SNP	C8orf12	ENST00000284481	human	ensembl	74_37	+1	known	missense	c.120	p.E40D	0.001	NULL	NULL	-	no_errors	C8orf12	HGNC	ENSG00000184608	tier1	-	-	63	0	0.00	69	16	18.82
CASP5	0	genome.wustl.edu	37	11	104878041	104878041	+	Frame_Shift_Del	DEL	T	T	-			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	11	104878041	104878041	T	-	DEL	CASP5	ENST00000393141	human	ensembl	74_37	-1	known	frame_shift_del	c.241	p.T81fs	0.000	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757	tier1			43	0	0.00	32	5	13.51
ZNF831	0	genome.wustl.edu	37	20	57829601	57829601	+	Missense_Mutation	SNP	A	A	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	20	57829601	57829601	A	T	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.4837	p.R1613W	0.005	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	tier1	-	-	19	0	0.00	31	11	26.19
KHDRBS1	0	genome.wustl.edu	37	1	32508536	32508536	+	RNA	SNP	T	T	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	1	32508536	32508536	T	A	SNP	KHDRBS1	ENST00000307714	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	KHDRBS1	HGNC	ENSG00000121774	tier1	-	-	42	0	0.00	57	6	9.23
VDAC1	0	genome.wustl.edu	37	5	133308469	133308469	+	Missense_Mutation	SNP	T	T	G			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	5	133308469	133308469	T	G	SNP	VDAC1	ENST00000265333	human	ensembl	74_37	-1	known	missense	c.845	p.Q282P	1.000	NULL	pfam_Porin_Euk/Tom40,prints_Porin_Euk	-	no_errors	VDAC1	HGNC	ENSG00000213585	tier1	-	-	43	0	0.00	45	6	11.76
LOC285556	0	genome.wustl.edu	37	4	100573428	100573428	+	Missense_Mutation	SNP	C	C	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	4	100573428	100573428	C	T	SNP	LOC285556	ENST00000511828	human	ensembl	74_37	-1	putative	missense	c.2378	p.G793D	0.002	NULL	NULL	-	no_errors	RP11-766F14.2	Clone_based_vega_gene	ENSG00000248713	tier1	-	-	43	0	0.00	45	4	8.16
PTGES	0	genome.wustl.edu	37	9	132501706	132501707	+	RNA	INS	-	-	AT			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	9	132501706	132501707	-	AT	INS	PTGES	ENST00000481476	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PTGES	HGNC	ENSG00000148344	tier1			9	0	0.00	6	5	45.45
KIF1B	0	genome.wustl.edu	37	1	10383993	10383993	+	Missense_Mutation	SNP	C	C	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	1	10383993	10383993	C	T	SNP	KIF1B	ENST00000263934	human	ensembl	74_37	+1	known	missense	c.2272	p.P758S	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	tier1	-	-	55	0	0.00	55	19	25.68
B3GNT3	0	genome.wustl.edu	37	19	17918638	17918638	+	Silent	SNP	C	C	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	19	17918638	17918638	C	A	SNP	B3GNT3	ENST00000318683	human	ensembl	74_37	+1	known	silent	c.22	p.R8	0.001	NULL	pfam_Glyco_trans_31	-	no_errors	B3GNT3	HGNC	ENSG00000179913	tier1	-	-	66	0	0.00	80	12	13.04
BSN	0	genome.wustl.edu	37	3	49700331	49700331	+	Missense_Mutation	SNP	G	G	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	3	49700331	49700331	G	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.10740	p.E3580D	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	tier1	-	-	92	0	0.00	43	27	38.57
VEZT	0	genome.wustl.edu	37	12	95694454	95694454	+	RNA	SNP	C	C	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	12	95694454	95694454	C	T	SNP	VEZT	ENST00000356859	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.107	-	-	-	no_errors	VEZT	HGNC	ENSG00000028203	tier1	-	-	52	0	0.00	26	19	42.22
PPP2R1B	0	genome.wustl.edu	37	11	111612792	111612792	+	Missense_Mutation	SNP	G	G	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	11	111612792	111612792	G	T	SNP	PPP2R1B	ENST00000311129	human	ensembl	74_37	-1	known	missense	c.1774	p.Q592K	1.000	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1B	HGNC	ENSG00000137713	tier1	-	-	56	0	0.00	24	4	14.29
BCL9	0	genome.wustl.edu	37	1	147084929	147084929	+	Nonsense_Mutation	SNP	C	C	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	1	147084929	147084929	C	T	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	nonsense	c.301	p.R101*	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	tier1	-	-	91	0	0.00	106	19	15.20
MTPAP	0	genome.wustl.edu	37	10	30657272	30657272	+	RNA	SNP	C	C	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	10	30657272	30657272	C	A	SNP	MTPAP	ENST00000471055	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.272	-	-	-	no_errors	MTPAP	HGNC	ENSG00000107951	tier1	-	-	18	0	0.00	8	6	42.86
SPG7	0	genome.wustl.edu	37	16	89590458	89590458	+	Missense_Mutation	SNP	C	C	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	16	89590458	89590458	C	T	SNP	SPG7	ENST00000268704	human	ensembl	74_37	+1	known	missense	c.421	p.R141W	1.000	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	SPG7	HGNC	ENSG00000197912	tier1	-	-	54	0	0.00	13	3	18.75
TPRXL	0	genome.wustl.edu	37	3	14105925	14105927	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	3	14105925	14105927	CAG	-	DEL	TPRXL	ENST00000326972	human	ensembl	74_37	+1	known	in_frame_del	c.249_251	p.S87in_frame_del	0.252:0.271:0.284	NULL	NULL	-	no_errors	TPRXL	HGNC	ENSG00000180438	tier1			34	0	0.00	27	4	12.90
PHRF1	0	genome.wustl.edu	37	11	610995	610995	+	Missense_Mutation	SNP	G	G	C			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	11	610995	610995	G	C	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.4719	p.E1573D	1.000	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	tier1	-	-	59	0	0.00	22	21	48.84
OR1E2	0	genome.wustl.edu	37	17	3336989	3336989	+	Missense_Mutation	SNP	A	A	C			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	17	3336989	3336989	A	C	SNP	OR1E2	ENST00000248384	human	ensembl	74_37	-1	known	missense	c.147	p.I49M	0.039	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1E2	HGNC	ENSG00000127780	tier1	-	-	98	0	0.00	25	89	78.07
EPDR1	0	genome.wustl.edu	37	7	37960263	37960275	+	Frame_Shift_Del	DEL	AGGCAGTGGCAGC	AGGCAGTGGCAGC	-			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	AGGCAGTGGCAGC	AGGCAGTGGCAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	7	37960263	37960275	AGGCAGTGGCAGC	-	DEL	EPDR1	ENST00000559325	human	ensembl	74_37	+1	known	frame_shift_del	c.82_94	p.Q31fs	0.174:0.169:0.163:0.158:0.152:0.146:0.139:0.133:0.126:0.118:0.111:0.103:0.095	NULL	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289	tier1			NA	NA	NA	NA	NA	NA
DIXDC1	0	genome.wustl.edu	37	11	111857611	111857611	+	Missense_Mutation	SNP	G	G	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	11	111857611	111857611	G	T	SNP	DIXDC1	ENST00000440460	human	ensembl	74_37	+1	known	missense	c.1022	p.R341L	1.000	NULL	pfam_DIX,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_DIX,pfscan_CH-domain,pfscan_DIX	-	no_errors	DIXDC1	HGNC	ENSG00000150764	tier1	-	-	24	0	0.00	16	3	15.79
FAM98A	0	genome.wustl.edu	37	2	33812338	33812338	+	Nonsense_Mutation	SNP	A	A	C			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	2	33812338	33812338	A	C	SNP	FAM98A	ENST00000238823	human	ensembl	74_37	-1	known	nonsense	c.572	p.L191*	0.890	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812	tier1	-	-	41	0	0.00	21	25	54.35
ENSG00000271894	0	genome.wustl.edu	37	2	56612793	56612793	+	RNA	SNP	G	G	C			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	2	56612793	56612793	G	C	SNP	ENSG00000271894	ENST00000607540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-482H16.1	Clone_based_vega_gene	ENSG00000271894	tier1	-	-	31	0	0.00	57	6	9.38
FAM20A	0	genome.wustl.edu	37	17	66537102	66537103	+	RNA	DEL	GA	GA	-			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	17	66537102	66537103	GA	-	DEL	FAM20A	ENST00000226094	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997:0.815	-	-	-	no_errors	FAM20A	HGNC	ENSG00000108950	tier1			51	0	0.00	49	27	35.53
NUP133	0	genome.wustl.edu	37	1	229606361	229606361	+	Missense_Mutation	SNP	G	G	C			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	1	229606361	229606361	G	C	SNP	NUP133	ENST00000261396	human	ensembl	74_37	-1	known	missense	c.2042	p.S681C	0.002	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248	tier1	-	-	68	0	0.00	35	14	28.00
DPEP1	0	genome.wustl.edu	37	16	89703959	89703959	+	Silent	SNP	C	C	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	16	89703959	89703959	C	T	SNP	DPEP1	ENST00000261615	human	ensembl	74_37	+1	known	silent	c.852	p.A284	0.955	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP1	HGNC	ENSG00000015413	tier1	rs142226072	-	32	0	0.00	20	10	33.33
ENSG00000254693	0	genome.wustl.edu	37	11	44626777	44626777	+	RNA	SNP	C	C	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	11	44626777	44626777	C	A	SNP	ENSG00000254693	ENST00000533814	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-58K22.5	Clone_based_vega_gene	ENSG00000254693	tier1	-	-	28	0	0.00	13	15	53.57
CHAF1A	0	genome.wustl.edu	37	19	4433417	4433417	+	Missense_Mutation	SNP	G	G	C			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	19	4433417	4433417	G	C	SNP	CHAF1A	ENST00000301280	human	ensembl	74_37	+1	known	missense	c.2554	p.D852H	1.000	NULL	pfam_CAF1A	-	no_errors	CHAF1A	HGNC	ENSG00000167670	tier1	-	-	44	0	0.00	38	16	29.63
MTMR9LP	0	genome.wustl.edu	37	1	32706857	32706857	+	RNA	SNP	A	A	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	1	32706857	32706857	A	T	SNP	MTMR9LP	ENST00000441044	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTMR9LP	HGNC	ENSG00000220785	tier1	-	-	77	0	0.00	89	19	17.59
ELN	0	genome.wustl.edu	37	7	73471034	73471034	+	Missense_Mutation	SNP	G	G	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	7	73471034	73471034	G	A	SNP	ELN	ENST00000358929	human	ensembl	74_37	+1	known	missense	c.1348	p.A450T	0.997	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540	tier1	-	-	65	0	0.00	44	11	20.00
ZNF736	0	genome.wustl.edu	37	7	63808779	63808780	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	7	63808779	63808780	AA	-	DEL	ZNF736	ENST00000355095	human	ensembl	74_37	+1	known	frame_shift_del	c.538_539	p.K180fs	0.997:0.991	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF736	HGNC	ENSG00000234444	tier1			47	0	0.00	43	6	12.24
TMPRSS9	0	genome.wustl.edu	37	19	2396405	2396405	+	RNA	SNP	A	A	G			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	19	2396405	2396405	A	G	SNP	TMPRSS9	ENST00000592650	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	TMPRSS9	HGNC	ENSG00000178297	tier1	-	-	33	0	0.00	23	8	25.81
TRIM40	0	genome.wustl.edu	37	6	30104709	30104709	+	RNA	SNP	C	C	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	6	30104709	30104709	C	T	SNP	TRIM40	ENST00000489892	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM40	HGNC	ENSG00000204614	tier1	-	-	14	0	0.00	9	4	30.77
N4BP2	0	genome.wustl.edu	37	4	40108621	40108621	+	Missense_Mutation	SNP	C	C	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	4	40108621	40108621	C	T	SNP	N4BP2	ENST00000261435	human	ensembl	74_37	+1	known	missense	c.1475	p.A492V	1.000	superfamily_P-loop_NTPase	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	tier1	-	-	73	0	0.00	53	55	50.93
ACTC1	0	genome.wustl.edu	37	15	35083451	35083451	+	Missense_Mutation	SNP	A	A	C			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	15	35083451	35083451	A	C	SNP	ACTC1	ENST00000290378	human	ensembl	74_37	-1	known	missense	c.854	p.M285R	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTC1	HGNC	ENSG00000159251	tier1	-	-	49	0	0.00	36	7	16.28
LOC101927648	0	genome.wustl.edu	37	1	143355633	143355633	+	RNA	SNP	G	G	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	1	143355633	143355633	G	T	SNP	LOC101927648	ENST00000423249	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-435B5.4	Clone_based_vega_gene	ENSG00000185044	tier1	-	-	25	0	0.00	24	8	25.00
RPL4	0	genome.wustl.edu	37	15	66795818	66795818	+	Missense_Mutation	SNP	G	G	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	15	66795818	66795818	G	A	SNP	RPL4	ENST00000307961	human	ensembl	74_37	-1	known	missense	c.53	p.S18F	0.993	superfamily_Ribosomal_L4_dom	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom	-	no_errors	RPL4	HGNC	ENSG00000174444	tier1	-	-	30	0	0.00	38	4	9.52
SPTBN5	0	genome.wustl.edu	37	15	42153620	42153622	+	In_Frame_Del	DEL	TAG	TAG	-			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	TAG	TAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	15	42153620	42153622	TAG	-	DEL	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	in_frame_del	c.7812_7810	p.L2604in_frame_del	0.010:0.006:0.003	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877	tier1			49	0	0.00	43	24	35.82
UXT	0	genome.wustl.edu	37	X	47511493	47511493	+	Missense_Mutation	SNP	T	T	G			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	X	47511493	47511493	T	G	SNP	UXT	ENST00000335890	human	ensembl	74_37	-1	known	missense	c.443	p.H148P	1.000	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin,prints_PFD_UXT	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin,prints_PFD_UXT	-	no_errors	UXT	HGNC	ENSG00000126756	tier1	-	-	73	0	0.00	53	43	44.79
ANKRD30BP2	0	genome.wustl.edu	37	21	14424331	14424331	+	RNA	SNP	T	T	C			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	21	14424331	14424331	T	C	SNP	ANKRD30BP2	ENST00000471407	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.095	-	-	-	no_errors	ANKRD30BP2	HGNC	ENSG00000224309	tier1	-	-	153	0	0.00	117	32	21.48
PRDM11	0	genome.wustl.edu	37	11	45117420	45117420	+	Missense_Mutation	SNP	T	T	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	11	45117420	45117420	T	A	SNP	PRDM11	ENST00000263765	human	ensembl	74_37	+1	known	missense	c.64	p.C22S	0.000	NULL	pfscan_SET_dom	-	no_errors	PRDM11	HGNC	ENSG00000019485	tier1	-	-	39	0	0.00	22	19	46.34
NTN1	0	genome.wustl.edu	37	17	9083207	9083207	+	Missense_Mutation	SNP	G	G	C			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	17	9083207	9083207	G	C	SNP	NTN1	ENST00000173229	human	ensembl	74_37	+1	known	missense	c.1291	p.G431R	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_N,pfam_Netrin_module_non-TIMP,pfam_EGF_laminin,superfamily_TIMP-like_OB-fold,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN1	HGNC	ENSG00000065320	tier1	-	-	48	0	0.00	54	9	14.29
ENSG00000215933	0	genome.wustl.edu	37	X	71372202	71372209	+	RNA	DEL	CGCGCGCA	CGCGCGCA	-			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	CGCGCGCA	CGCGCGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	X	71372202	71372209	CGCGCGCA	-	DEL	ENSG00000215933	ENST00000401114	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.001:0.015:0.009	-	-	-	no_errors	BX119917.1	Clone_based_ensembl_gene	ENSG00000215933	tier1			NA	NA	NA	NA	NA	NA
LOC645752	0	genome.wustl.edu	37	15	78208175	78208175	+	RNA	SNP	C	C	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	15	78208175	78208175	C	A	SNP	LOC645752	ENST00000563349	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-114H24.2	Clone_based_vega_gene	ENSG00000260776	tier1	-	-	159	0	0.00	119	47	28.31
HTR1E	0	genome.wustl.edu	37	6	87725415	87725415	+	Silent	SNP	C	C	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	6	87725415	87725415	C	T	SNP	HTR1E	ENST00000305344	human	ensembl	74_37	+1	known	silent	c.363	p.Y121	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1E	HGNC	ENSG00000168830	tier1	-	-	33	0	0.00	19	8	29.63
DAND5	0	genome.wustl.edu	37	19	13084213	13084213	+	Missense_Mutation	SNP	G	G	C			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	19	13084213	13084213	G	C	SNP	DAND5	ENST00000317060	human	ensembl	74_37	+1	known	missense	c.335	p.R112P	0.009	pfam_DAN,pirsf_Cerberus	pfam_DAN,pirsf_Cerberus	-	no_errors	DAND5	HGNC	ENSG00000179284	tier1	-	-	22	0	0.00	28	8	22.22
ENSG00000254693	0	genome.wustl.edu	37	11	44626780	44626782	+	RNA	DEL	GCC	GCC	-			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	11	44626780	44626782	GCC	-	DEL	ENSG00000254693	ENST00000533814	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	RP11-58K22.5	Clone_based_vega_gene	ENSG00000254693	tier1			26	0	0.00	11	13	54.17
PTMA	0	genome.wustl.edu	37	2	232577666	232577666	+	RNA	SNP	A	A	G			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	2	232577666	232577666	A	G	SNP	PTMA	ENST00000466801	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.836	-	-	-	no_errors	PTMA	HGNC	ENSG00000187514	tier1	-	-	60	0	0.00	35	6	14.63
IRF6	0	genome.wustl.edu	37	1	209969876	209969876	+	Nonsense_Mutation	SNP	T	T	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	1	209969876	209969876	T	A	SNP	IRF6	ENST00000367021	human	ensembl	74_37	-1	known	nonsense	c.196	p.K66*	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF6	HGNC	ENSG00000117595	tier1	-	-	40	0	0.00	29	14	32.56
PNPT1	0	genome.wustl.edu	37	2	55882064	55882064	+	Frame_Shift_Del	DEL	C	C	-			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	2	55882064	55882064	C	-	DEL	PNPT1	ENST00000415374	human	ensembl	74_37	-1	known	frame_shift_del	c.1466	p.C489fs	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_PNPase,tigrfam_PNPase	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,pfam_PNPase_PH_RNA-bd_bac/org-type,pfam_KH_dom_type_1,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2,superfamily_PNPase_PH_RNA-bd_bac/org-type,superfamily_NA-bd_OB-fold,smart_KH_dom,smart_RNA-binding_domain_S1,pirsf_PNPase,pfscan_KH_dom_type_1,pfscan_Rbsml_prot_S1_RNA-bd_dom,tigrfam_PNPase	-	no_errors	PNPT1	HGNC	ENSG00000138035	tier1			44	0	0.00	48	11	18.64
RNF170	0	genome.wustl.edu	37	8	42725241	42725241	+	Missense_Mutation	SNP	G	G	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	8	42725241	42725241	G	T	SNP	RNF170	ENST00000319073	human	ensembl	74_37	-1	known	missense	c.14	p.P5Q	0.000	NULL	pfam_DUF1232	-	no_errors	RNF170	HGNC	ENSG00000120925	tier1	-	-	44	0	0.00	56	5	8.20
TP53	0	genome.wustl.edu	37	17	7578284	7578284	+	Frame_Shift_Del	DEL	C	C	-			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	17	7578284	7578284	C	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.565	p.A189fs	0.997	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			78	0	0.00	18	59	76.62
MACF1	0	genome.wustl.edu	37	1	39888564	39888564	+	Nonsense_Mutation	SNP	G	G	T			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	1	39888564	39888564	G	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	nonsense	c.9955	p.E3319*	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603	tier1	-	-	54	0	0.00	41	13	24.07
CHERP	0	genome.wustl.edu	37	19	16643459	16643459	+	Silent	SNP	G	G	A			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	19	16643459	16643459	G	A	SNP	CHERP	ENST00000546361	human	ensembl	74_37	-1	known	silent	c.624	p.F208	0.700	superfamily_ENTH_VHS	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC	ENSG00000085872	tier1	-	-	130	0	0.00	37	161	80.90
FCER1A	0	genome.wustl.edu	37	1	159277654	159277654	+	Missense_Mutation	SNP	A	A	G			TCGA-N1-A6IA-01A-12D-A32I-09	TCGA-N1-A6IA-11A-11D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26f94549-f63a-4c0f-8c70-0341ea0f528f	29f71321-1ce9-42d2-8923-7528a4bff739	1	159277654	159277654	A	G	SNP	FCER1A	ENST00000368115	human	ensembl	74_37	+1	known	missense	c.706	p.I236V	0.106	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCER1A	HGNC	ENSG00000179639	tier1	-	-	67	0	0.00	39	52	57.14
