Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PLA2G4E	0	genome.wustl.edu	37	15	42292135	42292135	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	15	42292135	42292135	G	T	SNP	PLA2G4E	ENST00000413860	human	ensembl	74_37	-1	known	missense	c.829	p.Q277K	0.010	smart_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089	tier1	-	-	55	0	0.00	32	4	11.11
SMAP1	0	genome.wustl.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	A	-			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	6	71508370	71508370	A	-	DEL	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	frame_shift_del	c.506	p.K172fs	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305	tier1			43	0	0.00	26	4	13.33
POLR3A	0	genome.wustl.edu	37	10	79741210	79741210	+	Silent	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	10	79741210	79741210	C	T	SNP	POLR3A	ENST00000372371	human	ensembl	74_37	-1	known	silent	c.3867	p.L1289	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606	tier1	-	-	48	0	0.00	21	21	50.00
APOBEC3A	0	genome.wustl.edu	37	22	39357538	39357538	+	Silent	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	22	39357538	39357538	C	T	SNP	APOBEC3A	ENST00000249116	human	ensembl	74_37	+1	known	silent	c.321	p.A107	0.001	pfam_APOBEC_N,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3A	HGNC	ENSG00000128383	tier1	-	-	14	0	0.00	1	21	95.45
SLC26A6	0	genome.wustl.edu	37	3	48664427	48664427	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	3	48664427	48664427	G	A	SNP	SLC26A6	ENST00000395550	human	ensembl	74_37	-1	known	missense	c.1955	p.A652V	0.505	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A6	HGNC	ENSG00000225697	tier1	-	-	69	0	0.00	40	25	38.46
KDM2B	0	genome.wustl.edu	37	12	121879023	121879023	+	Frame_Shift_Del	DEL	G	G	-			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	12	121879023	121879023	G	-	DEL	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	frame_shift_del	c.3298	p.R1100fs	1.000	pfam_F-box_dom	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094	tier1			46	0	0.00	12	2	14.29
MYOC	0	genome.wustl.edu	37	1	171621534	171621534	+	Missense_Mutation	SNP	T	T	C			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	1	171621534	171621534	T	C	SNP	MYOC	ENST00000037502	human	ensembl	74_37	-1	known	missense	c.218	p.N73S	0.999	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	MYOC	HGNC	ENSG00000034971	tier1	-	-	101	0	0.00	28	53	65.43
ACSM1	0	genome.wustl.edu	37	16	20702376	20702376	+	Silent	SNP	T	T	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	16	20702376	20702376	T	A	SNP	ACSM1	ENST00000307493	human	ensembl	74_37	-1	known	silent	c.135	p.V45	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM1	HGNC	ENSG00000166743	tier1	-	-	111	0	0.00	53	18	25.00
CACNB1	0	genome.wustl.edu	37	17	37340097	37340097	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	17	37340097	37340097	C	T	SNP	CACNB1	ENST00000394303	human	ensembl	74_37	-1	known	missense	c.919	p.E307K	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,prints_VDCC_L_bsu	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b1su	-	no_errors	CACNB1	HGNC	ENSG00000067191	tier1	-	-	59	0	0.00	24	25	51.02
SLC22A8	0	genome.wustl.edu	37	11	62768268	62768268	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	11	62768268	62768268	G	T	SNP	SLC22A8	ENST00000336232	human	ensembl	74_37	-1	known	missense	c.361	p.L121M	0.982	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452	tier1	-	-	81	0	0.00	75	18	19.35
CAPZA1	0	genome.wustl.edu	37	1	113202204	113202208	+	RNA	DEL	CTCTC	CTCTC	-			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	CTCTC	CTCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	1	113202204	113202208	CTCTC	-	DEL	CAPZA1	ENST00000466066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.003:0.004:0.010:0.021	-	-	-	no_errors	CAPZA1	HGNC	ENSG00000116489	tier1			NA	NA	NA	NA	NA	NA
PARN	0	genome.wustl.edu	37	16	14647927	14647927	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	16	14647927	14647927	G	T	SNP	PARN	ENST00000437198	human	ensembl	74_37	-1	known	missense	c.1400	p.A467D	1.000	pfam_PolyA-riboNase_RNA_binding	pfam_RNase_CAF1,pfam_PolyA-riboNase_RNA_binding,pfam_R3H_ss-bd,superfamily_RNaseH-like_dom,pfscan_R3H_ss-bd	-	no_errors	PARN	HGNC	ENSG00000140694	tier1	-	-	42	0	0.00	39	4	9.30
SLCO1B3	0	genome.wustl.edu	37	12	21051368	21051368	+	Splice_Site	SNP	A	A	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	12	21051368	21051368	A	T	SNP	SLCO1B3	ENST00000553473	human	ensembl	74_37	+1	known	splice_site	c.1683-2	e12-2	1.000	-	-	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	tier1	-	-	66	0	0.00	38	21	35.59
HEPACAM2	0	genome.wustl.edu	37	7	92825146	92825146	+	Missense_Mutation	SNP	A	A	G			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	7	92825146	92825146	A	G	SNP	HEPACAM2	ENST00000394468	human	ensembl	74_37	-1	known	missense	c.1270	p.S424P	0.988	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	HEPACAM2	HGNC	ENSG00000188175	tier1	-	-	47	0	0.00	37	9	19.57
LCE4A	0	genome.wustl.edu	37	1	152681680	152681681	+	In_Frame_Ins	INS	-	-	AGCTCTGGGGGCTGCTGT			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	1	152681680	152681681	-	AGCTCTGGGGGCTGCTGT	INS	LCE4A	ENST00000335535	human	ensembl	74_37	+1	known	in_frame_ins	c.129_130	p.47in_frame_insCCSSGG	0.030:0.049	NULL	NULL	-	no_errors	LCE4A	HGNC	ENSG00000187170	tier1			NA	NA	NA	NA	NA	NA
PER1	0	genome.wustl.edu	37	17	8053306	8053306	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	17	8053306	8053306	C	T	SNP	PER1	ENST00000317276	human	ensembl	74_37	-1	known	missense	c.512	p.C171Y	1.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	tier1	-	-	41	0	0.00	89	13	12.75
HIGD2B	0	genome.wustl.edu	37	15	72968585	72968585	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	15	72968585	72968585	C	T	SNP	HIGD2B	ENST00000311755	human	ensembl	74_37	-1	known	missense	c.131	p.R44H	0.886	pfam_Hypoxia_induced_domain	pfam_Hypoxia_induced_domain	-	no_errors	HIGD2B	HGNC	ENSG00000175202	tier1	-	-	45	0	0.00	4	16	80.00
AMZ2	0	genome.wustl.edu	37	17	66247426	66247427	+	RNA	INS	-	-	CTGTATAG			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	17	66247426	66247427	-	CTGTATAG	INS	AMZ2	ENST00000581779	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.003	-	-	-	no_errors	AMZ2	HGNC	ENSG00000196704	tier1			NA	NA	NA	NA	NA	NA
RYR2	0	genome.wustl.edu	37	1	237670025	237670025	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	1	237670025	237670025	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.2623	p.H875Y	1.000	pfam_Ryanodine_rcpt	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	tier1	-	-	75	0	0.00	6	42	85.71
TLR2	0	genome.wustl.edu	37	4	154624836	154624836	+	Silent	SNP	G	G	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	4	154624836	154624836	G	A	SNP	TLR2	ENST00000260010	human	ensembl	74_37	+1	known	silent	c.777	p.V259	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462	tier1	-	-	65	0	0.00	34	3	8.11
ADCY5	0	genome.wustl.edu	37	3	123166519	123166519	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	3	123166519	123166519	C	T	SNP	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	missense	c.874	p.A292T	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	tier1	-	-	82	0	0.00	25	27	51.92
CAMTA1	0	genome.wustl.edu	37	1	7723490	7723490	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	1	7723490	7723490	G	A	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.883	p.G295R	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	tier1	-	-	120	0	0.00	95	34	26.15
ENSG00000215933	0	genome.wustl.edu	37	X	71372202	71372209	+	RNA	DEL	CGCGCGCA	CGCGCGCA	-			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	CGCGCGCA	CGCGCGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	X	71372202	71372209	CGCGCGCA	-	DEL	ENSG00000215933	ENST00000401114	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.001:0.015:0.009	-	-	-	no_errors	BX119917.1	Clone_based_ensembl_gene	ENSG00000215933	tier1			NA	NA	NA	NA	NA	NA
ARHGAP17	0	genome.wustl.edu	37	16	24950880	24950923	+	Splice_Site	DEL	CGCCGGTGGGCCTGGAAGTCCATAAGCTTCACACCAAAGCTACA	CGCCGGTGGGCCTGGAAGTCCATAAGCTTCACACCAAAGCTACA	-			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	CGCCGGTGGGCCTGGAAGTCCATAAGCTTCACACCAAAGCTACA	CGCCGGTGGGCCTGGAAGTCCATAAGCTTCACACCAAAGCTACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	16	24950880	24950923	CGCCGGTGGGCCTGGAAGTCCATAAGCTTCACACCAAAGCTACA	-	DEL	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	splice_site_del	c.1491-5_1491-1	e17-1	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors	ARHGAP17	HGNC	ENSG00000140750	tier1			NA	NA	NA	NA	NA	NA
FBXO18	0	genome.wustl.edu	37	10	5958320	5958320	+	Silent	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	10	5958320	5958320	C	T	SNP	FBXO18	ENST00000379999	human	ensembl	74_37	+1	known	silent	c.1842	p.F614	1.000	superfamily_P-loop_NTPase	pfam_UvrD-like_ATP-bd,pfam_F-box_dom,superfamily_P-loop_NTPase,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO18	HGNC	ENSG00000134452	tier1	-	-	89	0	0.00	60	23	27.71
CYGB	0	genome.wustl.edu	37	17	74527656	74527656	+	Silent	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	17	74527656	74527656	C	T	SNP	CYGB	ENST00000293230	human	ensembl	74_37	-1	known	silent	c.261	p.G87	0.983	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Globin_lamprey/hagfish	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Globin_lamprey/hagfish,prints_Myoglobin	-	no_errors	CYGB	HGNC	ENSG00000161544	tier1	-	-	84	0	0.00	28	54	65.85
PCSK7	0	genome.wustl.edu	37	11	117079626	117079626	+	Missense_Mutation	SNP	G	G	C			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	11	117079626	117079626	G	C	SNP	PCSK7	ENST00000320934	human	ensembl	74_37	-1	known	missense	c.1678	p.R560G	1.000	pfam_PrprotnconvertsP,superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK7	HGNC	ENSG00000160613	tier1	rs202038275	-	116	1	0.85	69	15	17.86
C9orf41	0	genome.wustl.edu	37	9	77598707	77598707	+	Missense_Mutation	SNP	C	C	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	9	77598707	77598707	C	A	SNP	C9orf41	ENST00000376834	human	ensembl	74_37	-1	known	missense	c.1206	p.L402F	1.000	pfam_N2227	pfam_N2227	-	no_errors	C9orf41	HGNC	ENSG00000156017	tier1	-	-	128	0	0.00	67	29	29.59
TUBB8	0	genome.wustl.edu	37	10	93397	93397	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	10	93397	93397	G	A	SNP	TUBB8	ENST00000309812	human	ensembl	74_37	-1	known	missense	c.935	p.T312M	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876	tier1	-	-	143	1	0.69	20	28	58.33
TMEM180	0	genome.wustl.edu	37	10	104228785	104228803	+	Frame_Shift_Del	DEL	CCATGGGGCTGGGTCAGCC	CCATGGGGCTGGGTCAGCC	-			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	CCATGGGGCTGGGTCAGCC	CCATGGGGCTGGGTCAGCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	10	104228785	104228803	CCATGGGGCTGGGTCAGCC	-	DEL	TMEM180	ENST00000238936	human	ensembl	74_37	+1	known	frame_shift_del	c.3_17	p.W9fs	0.984:1.000:1.000:1.000:1.000:1.000:0.999:0.660:0.341:0.203:0.069:0.045:0.004:0.000:0.000:0.007:0.970:0.990:0.989	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM180	HGNC	ENSG00000138111	tier1			NA	NA	NA	NA	NA	NA
UGT2B4	0	genome.wustl.edu	37	4	70346624	70346624	+	Missense_Mutation	SNP	T	T	G			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	4	70346624	70346624	T	G	SNP	UGT2B4	ENST00000305107	human	ensembl	74_37	-1	known	missense	c.1315	p.K439Q	1.000	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B4	HGNC	ENSG00000156096	tier1	-	-	84	0	0.00	66	14	17.28
PIWIL3	0	genome.wustl.edu	37	22	25131832	25131832	+	Missense_Mutation	SNP	A	A	G			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	22	25131832	25131832	A	G	SNP	PIWIL3	ENST00000332271	human	ensembl	74_37	-1	known	missense	c.1477	p.S493P	0.324	superfamily_RNaseH-like_dom	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	tier1	-	-	97	0	0.00	53	16	23.19
EDF1	0	genome.wustl.edu	37	9	139760646	139760646	+	Missense_Mutation	SNP	G	G	C			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	9	139760646	139760646	G	C	SNP	EDF1	ENST00000224073	human	ensembl	74_37	-1	known	missense	c.65	p.A22G	1.000	pfam_MBF1_N	pfam_MBF1_N,pfam_Cro/C1-type_HTH,superfamily_Lambda_DNA-bd_dom,smart_Cro/C1-type_HTH,pfscan_Cro/C1-type_HTH	-	no_errors	EDF1	HGNC	ENSG00000107223	tier1	-	-	63	0	0.00	5	28	84.85
IGLV9-49	0	genome.wustl.edu	37	22	22697817	22697817	+	Silent	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	22	22697817	22697817	C	T	SNP	IGLV9-49	ENST00000427632	human	ensembl	74_37	+1	known	silent	c.105	p.A35	0.000	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGLV9-49	HGNC	ENSG00000223350	tier1	-	-	37	0	0.00	34	14	29.17
GGA2	0	genome.wustl.edu	37	16	23491209	23491209	+	Splice_Site	SNP	C	C	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	16	23491209	23491209	C	A	SNP	GGA2	ENST00000309859	human	ensembl	74_37	-1	known	splice_site	c.1007-1	e11-1	0.519	-	-	-	no_errors	GGA2	HGNC	ENSG00000103365	tier1	-	-	30	0	0.00	24	7	22.58
ENSG00000227407	0	genome.wustl.edu	37	19	54942178	54942178	+	RNA	SNP	A	A	G			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	19	54942178	54942178	A	G	SNP	ENSG00000227407	ENST00000457113	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC008746.3	Clone_based_vega_gene	ENSG00000227407	tier1	-	-	52	0	0.00	56	8	12.50
TICRR	0	genome.wustl.edu	37	15	90128963	90128963	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	15	90128963	90128963	G	T	SNP	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	missense	c.1201	p.G401C	0.999	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534	tier1	-	-	54	0	0.00	23	5	17.86
KLRG1	0	genome.wustl.edu	37	12	9161587	9161587	+	Missense_Mutation	SNP	T	T	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	12	9161587	9161587	T	A	SNP	KLRG1	ENST00000266551	human	ensembl	74_37	+1	known	missense	c.374	p.F125Y	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRG1	HGNC	ENSG00000139187	tier1	-	-	112	0	0.00	39	31	43.66
NDUFS2	0	genome.wustl.edu	37	1	161179072	161179072	+	Silent	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	1	161179072	161179072	C	T	SNP	NDUFS2	ENST00000367993	human	ensembl	74_37	+1	known	silent	c.483	p.I161	1.000	tigrfam_NDH1_su_D/H	pfam_NADH_Q_OxRdtase_suD,tigrfam_NDH1_su_D/H	-	no_errors	NDUFS2	HGNC	ENSG00000158864	tier1	-	-	68	0	0.00	41	18	30.51
IL12RB1	0	genome.wustl.edu	37	19	18182934	18182934	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	19	18182934	18182934	C	T	SNP	IL12RB1	ENST00000593993	human	ensembl	74_37	-1	known	missense	c.1009	p.D337N	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB1	HGNC	ENSG00000096996	tier1	-	-	51	0	0.00	14	7	33.33
SHROOM1	0	genome.wustl.edu	37	5	132161804	132161804	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	5	132161804	132161804	C	T	SNP	SHROOM1	ENST00000378679	human	ensembl	74_37	-1	known	missense	c.29	p.R10H	0.528	NULL	pfam_ASD2,pfam_ASD1	-	no_errors	SHROOM1	HGNC	ENSG00000164403	tier1	-	-	14	0	0.00	3	7	70.00
ACTL8	0	genome.wustl.edu	37	1	18149795	18149795	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	1	18149795	18149795	G	T	SNP	ACTL8	ENST00000375406	human	ensembl	74_37	+1	known	missense	c.292	p.V98L	0.974	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL8	HGNC	ENSG00000117148	tier1	-	-	63	0	0.00	53	19	26.39
COPRS	0	genome.wustl.edu	37	17	30183852	30183852	+	Missense_Mutation	SNP	C	C	G			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	17	30183852	30183852	C	G	SNP	COPRS	ENST00000302362	human	ensembl	74_37	-1	known	missense	c.132	p.Q44H	0.002	NULL	NULL	-	no_errors	COPRS	HGNC	ENSG00000172301	tier1	-	-	105	0	0.00	66	29	30.53
GCNT2	0	genome.wustl.edu	37	6	10530032	10530032	+	Silent	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	6	10530032	10530032	C	T	SNP	GCNT2	ENST00000379597	human	ensembl	74_37	+1	known	silent	c.888	p.P296	0.014	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT2	HGNC	ENSG00000111846	tier1	-	-	19	0	0.00	10	24	70.59
KPNA2	0	genome.wustl.edu	37	17	66041937	66041937	+	Missense_Mutation	SNP	A	A	C			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	17	66041937	66041937	A	C	SNP	KPNA2	ENST00000330459	human	ensembl	74_37	+1	known	missense	c.1397	p.E466A	1.000	superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA2	HGNC	ENSG00000182481	tier1	-	-	91	0	0.00	51	24	32.00
MAP4K4	0	genome.wustl.edu	37	2	102315000	102315000	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	2	102315000	102315000	G	T	SNP	MAP4K4	ENST00000324219	human	ensembl	74_37	+1	known	missense	c.123	p.K41N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054	tier1	-	-	139	0	0.00	70	41	36.94
ACACB	0	genome.wustl.edu	37	12	109577236	109577236	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	12	109577236	109577236	G	A	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.26	p.C9Y	0.847	NULL	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	tier1	-	-	47	0	0.00	3	16	84.21
RPL23AP79	0	genome.wustl.edu	37	19	59093512	59093512	+	RNA	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	19	59093512	59093512	C	T	SNP	RPL23AP79	ENST00000493504	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.646	-	-	-	no_errors	RPL23AP79	HGNC	ENSG00000213753	tier1	-	-	60	0	0.00	41	12	22.64
SIGLEC14	0	genome.wustl.edu	37	19	52147072	52147072	+	Silent	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	19	52147072	52147072	C	T	SNP	SIGLEC14	ENST00000360844	human	ensembl	74_37	-1	known	silent	c.972	p.P324	0.002	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC14	HGNC	ENSG00000254415	tier1	-	-	27	0	0.00	5	3	37.50
LRP1B	0	genome.wustl.edu	37	2	141460072	141460072	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	2	141460072	141460072	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.6074	p.R2025H	0.958	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	-	-	29	0	0.00	2	11	84.62
GNA15	0	genome.wustl.edu	37	19	3150253	3150253	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	19	3150253	3150253	G	A	SNP	GNA15	ENST00000262958	human	ensembl	74_37	+1	known	missense	c.455	p.R152Q	0.871	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_errors	GNA15	HGNC	ENSG00000060558	tier1	-	-	92	0	0.00	43	4	8.51
CENPJ	0	genome.wustl.edu	37	13	25463474	25463474	+	Missense_Mutation	SNP	T	T	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	13	25463474	25463474	T	A	SNP	CENPJ	ENST00000381884	human	ensembl	74_37	-1	known	missense	c.3281	p.K1094I	0.997	NULL	pfam_Tcp10_C_dom	-	no_errors	CENPJ	HGNC	ENSG00000151849	tier1	-	-	108	0	0.00	50	46	47.92
RIPPLY2	0	genome.wustl.edu	37	6	84563814	84563814	+	Splice_Site	SNP	A	A	C			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	6	84563814	84563814	A	C	SNP	RIPPLY2	ENST00000369689	human	ensembl	74_37	+1	known	splice_site	c.175-2	e3-2	0.295	-	-	-	no_errors	RIPPLY2	HGNC	ENSG00000203877	tier1	-	-	84	0	0.00	38	23	37.70
UGT8	0	genome.wustl.edu	37	4	115544604	115544604	+	Missense_Mutation	SNP	T	T	G			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	4	115544604	115544604	T	G	SNP	UGT8	ENST00000310836	human	ensembl	74_37	+1	known	missense	c.568	p.L190V	0.999	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607	tier1	-	-	95	0	0.00	57	17	22.97
ATRX	0	genome.wustl.edu	37	X	76939007	76939014	+	Frame_Shift_Del	DEL	TAGCTGTA	TAGCTGTA	-			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	TAGCTGTA	TAGCTGTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	X	76939007	76939014	TAGCTGTA	-	DEL	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	frame_shift_del	c.1741_1734	p.T579fs	1.000:0.998:1.000:1.000:0.997:0.995:0.673:0.617	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1			NA	NA	NA	NA	NA	NA
ALMS1	0	genome.wustl.edu	37	2	73613032	73613037	+	In_Frame_Del	DEL	GGAGGA	GGAGGA	-			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	GGAGGA	GGAGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	2	73613032	73613037	GGAGGA	-	DEL	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	in_frame_del	c.36_41	p.EE16in_frame_del	0.989:0.996:1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	tier1			NA	NA	NA	NA	NA	NA
DCC	0	genome.wustl.edu	37	18	50450187	50450187	+	Missense_Mutation	SNP	A	A	C			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	18	50450187	50450187	A	C	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.808	p.S270R	0.966	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323	tier1	-	-	74	0	0.00	50	5	9.09
PCDH11Y	0	genome.wustl.edu	37	Y	4968029	4968029	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	Y	4968029	4968029	G	A	SNP	PCDH11Y	ENST00000215473	human	ensembl	74_37	+1	known	missense	c.2410	p.V804M	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11Y	HGNC	ENSG00000099715	tier1	-	-	52	0	0.00	4	23	85.19
HMGXB4	0	genome.wustl.edu	37	22	35683342	35683342	+	Silent	SNP	T	T	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	22	35683342	35683342	T	A	SNP	HMGXB4	ENST00000216106	human	ensembl	74_37	+1	known	silent	c.1365	p.I455	0.999	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGXB4	HGNC	ENSG00000100281	tier1	-	-	42	0	0.00	45	22	32.84
RHCE	0	genome.wustl.edu	37	1	25712200	25712200	+	Splice_Site	SNP	A	A	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	1	25712200	25712200	A	T	SNP	RHCE	ENST00000294413	human	ensembl	74_37	-1	known	splice_site	c.1073+2	e7+2	0.129	-	-	-	no_errors	RHCE	HGNC	ENSG00000188672	tier1	-	-	93	0	0.00	58	27	31.40
MAP3K9	0	genome.wustl.edu	37	14	71199365	71199365	+	Silent	SNP	C	C	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	14	71199365	71199365	C	T	SNP	MAP3K9	ENST00000555993	human	ensembl	74_37	-1	known	silent	c.2763	p.S921	0.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_Regulat_G_prot_signal_superfam,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K9	HGNC	ENSG00000006432	tier1	-	-	121	0	0.00	75	82	52.23
PREX2	0	genome.wustl.edu	37	8	69032470	69032470	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	8	69032470	69032470	G	T	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.3544	p.V1182L	0.944	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	tier1	-	-	33	0	0.00	41	4	8.89
KIAA1524	0	genome.wustl.edu	37	3	108278660	108278660	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	3	108278660	108278660	G	T	SNP	KIAA1524	ENST00000295746	human	ensembl	74_37	-1	known	missense	c.1957	p.Q653K	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507	tier1	-	-	53	0	0.00	38	4	9.52
DACT3	0	genome.wustl.edu	37	19	47151823	47151823	+	Silent	SNP	G	G	A			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	19	47151823	47151823	G	A	SNP	DACT3	ENST00000391916	human	ensembl	74_37	-1	known	silent	c.1806	p.F602	0.998	NULL	NULL	-	no_errors	DACT3	HGNC	ENSG00000197380	tier1	-	-	29	0	0.00	1	12	92.31
OR52N1	0	genome.wustl.edu	37	11	5809895	5809895	+	Missense_Mutation	SNP	A	A	G			TCGA-PC-A5DM-01A-11D-A27P-09	TCGA-PC-A5DM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3aab5ba3-518b-47b2-9f79-e48905f33393	b18c8e92-1377-4cec-a787-3a8277838652	11	5809895	5809895	A	G	SNP	OR52N1	ENST00000317078	human	ensembl	74_37	-1	known	missense	c.152	p.I51T	0.955	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR52N1	HGNC	ENSG00000181001	tier1	-	-	55	0	0.00	28	18	39.13
