Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CCDC158	0	genome.wustl.edu	37	4	77305549	77305549	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	4	77305549	77305549	G	T	SNP	CCDC158	ENST00000388914	human	ensembl	74_37	-1	known	missense	c.418	p.Q140K	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749	tier1	-	-	24	0	0.00	13	3	18.75
KIAA1549	0	genome.wustl.edu	37	7	138601629	138601629	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	7	138601629	138601629	C	A	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.2743	p.A915S	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	tier1	-	-	34	0	0.00	22	7	24.14
NCKAP1	0	genome.wustl.edu	37	2	183817934	183817934	+	Frame_Shift_Del	DEL	T	T	-			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	2	183817934	183817934	T	-	DEL	NCKAP1	ENST00000360982	human	ensembl	74_37	-1	known	frame_shift_del	c.2297	p.D766fs	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676	tier1			66	0	0.00	62	17	21.52
KLF8	0	genome.wustl.edu	37	X	56276720	56276720	+	Missense_Mutation	SNP	A	A	G			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	X	56276720	56276720	A	G	SNP	KLF8	ENST00000468660	human	ensembl	74_37	+1	known	missense	c.64	p.M22V	0.978	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF8	HGNC	ENSG00000102349	tier1	-	-	21	0	0.00	23	16	41.03
SMYD5	0	genome.wustl.edu	37	2	73447119	73447119	+	Nonstop_Mutation	SNP	G	G	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	2	73447119	73447119	G	T	SNP	SMYD5	ENST00000413491	human	ensembl	74_37	+1	known	nonstop	c.245	p.*82L	0.063	NULL	NULL	-	no_errors	SMYD5	HGNC	ENSG00000135632	tier1	-	-	47	0	0.00	22	4	14.81
WDFY3	0	genome.wustl.edu	37	4	85625498	85625498	+	Missense_Mutation	SNP	C	C	G			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	4	85625498	85625498	C	G	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.8435	p.R2812T	0.997	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	tier1	-	-	67	0	0.00	38	18	32.14
RFPL4A	0	genome.wustl.edu	37	19	56274126	56274126	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	19	56274126	56274126	G	A	SNP	RFPL4A	ENST00000434937	human	ensembl	74_37	+1	novel	missense	c.449	p.R150H	0.116	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RFPL4A	HGNC	ENSG00000223638	tier1	-	-	185	1	0.53	132	17	11.41
ENSG00000244227	0	genome.wustl.edu	37	3	167621135	167621135	+	RNA	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	3	167621135	167621135	C	T	SNP	ENSG00000244227	ENST00000459923	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP11-298O21.5	Clone_based_vega_gene	ENSG00000244227	tier1	-	-	55	0	0.00	57	7	10.94
KIAA1549L	0	genome.wustl.edu	37	11	33564330	33564330	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	11	33564330	33564330	G	T	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	missense	c.330	p.K110N	0.004	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427	tier1	-	-	32	0	0.00	44	4	8.33
GRIN3A	0	genome.wustl.edu	37	9	104335644	104335644	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	9	104335644	104335644	C	T	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.3160	p.E1054K	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	tier1	-	-	45	0	0.00	57	5	8.06
FAM182B	0	genome.wustl.edu	37	20	25755864	25755864	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	20	25755864	25755864	C	T	SNP	FAM182B	ENST00000376404	human	ensembl	74_37	-1	known	missense	c.83	p.G28E	0.317	NULL	NULL	-	no_errors	FAM182B	HGNC	ENSG00000175170	tier1	-	-	53	0	0.00	52	10	16.13
PAPD5	0	genome.wustl.edu	37	16	50265294	50265294	+	RNA	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	16	50265294	50265294	C	T	SNP	PAPD5	ENST00000573002	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PAPD5	HGNC	ENSG00000121274	tier1	-	-	67	0	0.00	38	20	34.48
CCDC88C	0	genome.wustl.edu	37	14	91744358	91744358	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	14	91744358	91744358	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.4966	p.V1656I	0.000	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	tier1	-	-	64	0	0.00	42	14	25.00
DNAH5	0	genome.wustl.edu	37	5	13922290	13922290	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	5	13922290	13922290	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.586	p.R196C	0.152	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	tier1	rs200314274	-	60	0	0.00	89	9	9.18
ENSG00000271554	0	genome.wustl.edu	37	1	36475026	36475027	+	RNA	INS	-	-	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	1	36475026	36475027	-	A	INS	ENSG00000271554	ENST00000479395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.026:0.011	-	-	-	no_errors	RP4-665N4.8	Clone_based_vega_gene	ENSG00000271554	tier1			17	0	0.00	18	4	18.18
KCNV1	0	genome.wustl.edu	37	8	110980710	110980710	+	Missense_Mutation	SNP	G	G	C			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	8	110980710	110980710	G	C	SNP	KCNV1	ENST00000297404	human	ensembl	74_37	-1	known	missense	c.1110	p.S370R	0.998	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794	tier1	-	-	32	0	0.00	21	25	54.35
HEATR2	0	genome.wustl.edu	37	7	825229	825229	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	7	825229	825229	G	A	SNP	HEATR2	ENST00000297440	human	ensembl	74_37	+1	known	missense	c.2507	p.R836H	1.000	NULL	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR2	HGNC	ENSG00000164818	tier1	-	-	29	0	0.00	64	7	9.72
CABP1	0	genome.wustl.edu	37	12	121093630	121093635	+	In_Frame_Del	DEL	GTGCGT	GTGCGT	-			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	GTGCGT	GTGCGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	12	121093630	121093635	GTGCGT	-	DEL	CABP1	ENST00000453000	human	ensembl	74_37	+1	putative	in_frame_del	c.17_22	p.AC7in_frame_del	0.940:0.982:0.991:0.991:0.991:0.982	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP1	HGNC	ENSG00000157782	tier1			NA	NA	NA	NA	NA	NA
PIWIL1	0	genome.wustl.edu	37	12	130833979	130833979	+	Silent	SNP	C	C	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	12	130833979	130833979	C	A	SNP	PIWIL1	ENST00000245255	human	ensembl	74_37	+1	known	silent	c.930	p.T310	1.000	pfam_PAZ_dom,superfamily_PAZ_dom,smart_PAZ_dom,pfscan_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	tier1	-	-	38	0	0.00	27	4	12.90
ANKRD36BP1	0	genome.wustl.edu	37	1	168215839	168215839	+	RNA	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	1	168215839	168215839	C	T	SNP	ANKRD36BP1	ENST00000358576	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.703	-	-	-	no_errors	ANKRD36BP1	HGNC	ENSG00000214262	tier1	-	-	66	0	0.00	53	11	17.19
TAF1B	0	genome.wustl.edu	37	2	10059732	10059732	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	2	10059732	10059732	G	T	SNP	TAF1B	ENST00000263663	human	ensembl	74_37	+1	known	missense	c.1348	p.V450L	1.000	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750	tier1	-	-	58	0	0.00	38	4	9.52
CACNA1E	0	genome.wustl.edu	37	1	181680102	181680103	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	1	181680102	181680103	AG	-	DEL	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	frame_shift_del	c.1068_1069	p.R360fs	1.000:1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	tier1			39	0	0.00	23	6	20.69
B4GALNT3	0	genome.wustl.edu	37	12	665772	665772	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	12	665772	665772	G	A	SNP	B4GALNT3	ENST00000266383	human	ensembl	74_37	+1	known	missense	c.2120	p.G707D	0.894	pfam_Chond_GalNAc	pfam_PA14,pfam_Chond_GalNAc,smart_PA14	-	no_errors	B4GALNT3	HGNC	ENSG00000139044	tier1	-	-	94	0	0.00	54	15	21.74
MACF1	0	genome.wustl.edu	37	1	39823522	39823522	+	Missense_Mutation	SNP	A	A	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	1	39823522	39823522	A	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.5714	p.K1905M	0.999	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603	tier1	-	-	56	0	0.00	46	10	17.86
DNAJC17	0	genome.wustl.edu	37	15	41066591	41066591	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	15	41066591	41066591	C	A	SNP	DNAJC17	ENST00000220496	human	ensembl	74_37	-1	known	missense	c.644	p.G215V	1.000	pfam_RRM_dom	pfam_DnaJ_domain,pfam_RRM_dom,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC17	HGNC	ENSG00000104129	tier1	-	-	34	0	0.00	46	4	8.00
COMP	0	genome.wustl.edu	37	19	18898454	18898454	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	19	18898454	18898454	G	T	SNP	COMP	ENST00000222271	human	ensembl	74_37	-1	known	missense	c.981	p.N327K	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd_dom,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664	tier1	-	-	29	0	0.00	36	4	9.76
DMRT1	0	genome.wustl.edu	37	9	916825	916825	+	Silent	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	9	916825	916825	G	A	SNP	DMRT1	ENST00000382276	human	ensembl	74_37	+1	known	silent	c.885	p.P295	0.365	NULL	pfam_DM_DNA-bd,pfam_DMRT1-like,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT1	HGNC	ENSG00000137090	tier1	-	-	51	0	0.00	73	12	14.12
CSMD2	0	genome.wustl.edu	37	1	34312507	34312507	+	Silent	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	1	34312507	34312507	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	silent	c.1011	p.R337	0.212	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	tier1	rs143306375	-	36	0	0.00	27	7	20.59
CCDC169-SOHLH2	0	genome.wustl.edu	37	13	36765961	36765961	+	Silent	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	13	36765961	36765961	C	T	SNP	CCDC169-SOHLH2	ENST00000511166	human	ensembl	74_37	-1	known	silent	c.732	p.L244	0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	CCDC169-SOHLH2	HGNC	ENSG00000250709	tier1	-	-	81	0	0.00	67	11	14.10
ARID2	0	genome.wustl.edu	37	12	46246549	46246549	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	12	46246549	46246549	G	T	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	missense	c.4643	p.G1548V	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	tier1	-	-	26	0	0.00	34	4	10.53
TMLHE	0	genome.wustl.edu	37	X	154736707	154736707	+	Missense_Mutation	SNP	G	G	C			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	X	154736707	154736707	G	C	SNP	TMLHE	ENST00000334398	human	ensembl	74_37	-1	known	missense	c.847	p.Q283E	0.996	pfam_Taurine_dOase,tigrfam_Trimethyllysine_dOase	pfam_Taurine_dOase,pfam_DUF971,tigrfam_Trimethyllysine_dOase	-	no_errors	TMLHE	HGNC	ENSG00000185973	tier1	-	-	37	0	0.00	30	21	41.18
DLG4	0	genome.wustl.edu	37	17	7094060	7094060	+	Silent	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	17	7094060	7094060	G	A	SNP	DLG4	ENST00000399510	human	ensembl	74_37	-1	known	silent	c.2271	p.P757	1.000	pirsf_M-assoc_guanylate_kinase,superfamily_P-loop_NTPase	pirsf_M-assoc_guanylate_kinase,pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,pfam_L27_1,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG4	HGNC	ENSG00000132535	tier1	-	-	72	0	0.00	56	25	30.86
KNTC1	0	genome.wustl.edu	37	12	123036012	123036012	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	12	123036012	123036012	G	A	SNP	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	missense	c.1138	p.E380K	1.000	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	tier1	-	-	73	0	0.00	58	17	22.67
JAKMIP3	0	genome.wustl.edu	37	10	133963537	133963537	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	10	133963537	133963537	G	A	SNP	JAKMIP3	ENST00000298622	human	ensembl	74_37	+1	known	missense	c.1999	p.A667T	1.000	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385	tier1	rs199769239	GMAF=0.0005	20	0	0.00	22	7	24.14
ACCS	0	genome.wustl.edu	37	11	44104824	44104824	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	11	44104824	44104824	G	A	SNP	ACCS	ENST00000263776	human	ensembl	74_37	+1	known	missense	c.1217	p.R406H	0.642	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCS	HGNC	ENSG00000110455	tier1	rs138481594	GMAF=0.0005	81	0	0.00	58	6	9.38
CCNDBP1	0	genome.wustl.edu	37	15	43483857	43483857	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	15	43483857	43483857	G	A	SNP	CCNDBP1	ENST00000300213	human	ensembl	74_37	+1	known	missense	c.844	p.D282N	1.000	NULL	NULL	-	no_errors	CCNDBP1	HGNC	ENSG00000166946	tier1	-	-	19	0	0.00	22	6	21.43
TBX5	0	genome.wustl.edu	37	12	114793771	114793771	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	12	114793771	114793771	G	A	SNP	TBX5	ENST00000310346	human	ensembl	74_37	-1	known	missense	c.1123	p.R375W	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225	tier1	-	-	54	0	0.00	31	10	24.39
RFPL4AL1	0	genome.wustl.edu	37	19	56284130	56284130	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	19	56284130	56284130	G	A	SNP	RFPL4AL1	ENST00000341750	human	ensembl	74_37	+1	novel	missense	c.449	p.R150H	0.184	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL4AL1	HGNC	ENSG00000229292	tier1	-	-	77	0	0.00	45	6	11.54
ADCY2	0	genome.wustl.edu	37	5	7724664	7724664	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	5	7724664	7724664	G	T	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	missense	c.1710	p.W570C	1.000	pfam_Adenylate_cyclase-like	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	tier1	-	-	49	0	0.00	46	18	28.12
GOT1L1	0	genome.wustl.edu	37	8	37791833	37791834	+	Frame_Shift_Ins	INS	-	-	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	8	37791833	37791834	-	T	INS	GOT1L1	ENST00000307599	human	ensembl	74_37	-1	known	frame_shift_ins	c.1244_1243	p.T415fs	0.000:0.000	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans	-	no_errors	GOT1L1	HGNC	ENSG00000169154	tier1			52	0	0.00	41	5	10.87
RASSF1	0	genome.wustl.edu	37	3	50368093	50368095	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	3	50368093	50368095	CTC	-	DEL	RASSF1	ENST00000357043	human	ensembl	74_37	-1	known	in_frame_del	c.954_952	p.E318in_frame_del	0.996:1.000:1.000	pfscan_SARAH_dom	pfam_Ras-assoc,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	RASSF1	HGNC	ENSG00000068028	tier1			29	0	0.00	30	3	9.09
CARNS1	0	genome.wustl.edu	37	11	67186392	67186392	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	11	67186392	67186392	C	A	SNP	CARNS1	ENST00000445895	human	ensembl	74_37	+1	known	missense	c.530	p.A177E	0.964	NULL	superfamily_PreATP-grasp_dom,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508	tier1	-	-	72	0	0.00	70	12	14.63
OR6T1	0	genome.wustl.edu	37	11	123814023	123814023	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	11	123814023	123814023	C	T	SNP	OR6T1	ENST00000321252	human	ensembl	74_37	-1	known	missense	c.523	p.D175N	0.887	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6T1	HGNC	ENSG00000181499	tier1	rs149839618	GMAF=0.0005	41	0	0.00	24	6	20.00
TPRX1	0	genome.wustl.edu	37	19	48305491	48305502	+	In_Frame_Del	DEL	GATTGGGCCTGG	GATTGGGCCTGG	-			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	GATTGGGCCTGG	GATTGGGCCTGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	19	48305491	48305502	GATTGGGCCTGG	-	DEL	TPRX1	ENST00000535759	human	ensembl	74_37	-1	known	in_frame_del	c.1068_1057	p.PGPI353in_frame_del	0.797:0.775:0.029:0.021:0.020:0.012:0.004:0.004:0.004:0.005:0.013:0.013	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TPRX1	HGNC	ENSG00000178928	tier1			NA	NA	NA	NA	NA	NA
HMBOX1	0	genome.wustl.edu	37	8	28909077	28909086	+	Frame_Shift_Del	DEL	GGATGCAAGC	GGATGCAAGC	-			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	GGATGCAAGC	GGATGCAAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	8	28909077	28909086	GGATGCAAGC	-	DEL	HMBOX1	ENST00000355231	human	ensembl	74_37	+1	putative	frame_shift_del	c.1130_1139	p.R377fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HMBOX1	HGNC	ENSG00000147421	tier1			NA	NA	NA	NA	NA	NA
RASGRF1	0	genome.wustl.edu	37	15	79298606	79298606	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	15	79298606	79298606	C	T	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	missense	c.2036	p.R679H	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	tier1	-	-	53	0	0.00	49	10	16.95
FBXW4	0	genome.wustl.edu	37	10	103386256	103386257	+	RNA	INS	-	-	TT			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	10	103386256	103386257	-	TT	INS	FBXW4	ENST00000470093	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007:0.005	-	-	-	no_errors	FBXW4	HGNC	ENSG00000107829	tier1			30	0	0.00	23	2	8.00
FBN3	0	genome.wustl.edu	37	19	8154784	8154784	+	Nonsense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	19	8154784	8154784	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	nonsense	c.6244	p.R2082*	0.912	superfamily_TB_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	tier1	-	-	45	0	0.00	72	7	8.86
ENSG00000220256	0	genome.wustl.edu	37	2	240702074	240702074	+	Nonsense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	2	240702074	240702074	C	T	SNP	ENSG00000220256	ENST00000407524	human	ensembl	74_37	+1	putative	nonsense	c.124	p.Q42*	0.009	NULL	NULL	-	no_errors	AC093802.1	Clone_based_vega_gene	ENSG00000220256	tier1	-	-	114	0	0.00	78	17	17.89
TMPRSS15	0	genome.wustl.edu	37	21	19744557	19744557	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	21	19744557	19744557	C	T	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	missense	c.617	p.G206E	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646	tier1	-	-	25	0	0.00	31	5	13.89
SLC5A10	0	genome.wustl.edu	37	17	18918510	18918511	+	In_Frame_Ins	INS	-	-	CGGTAGGGGGGTGGGGGC			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	17	18918510	18918511	-	CGGTAGGGGGGTGGGGGC	INS	SLC5A10	ENST00000395647	human	ensembl	74_37	+1	known	in_frame_ins	c.1287_1288	p.LVI430in_frame_ins*	0.894:0.984	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A10	HGNC	ENSG00000154025	tier1			NA	NA	NA	NA	NA	NA
MYO3B	0	genome.wustl.edu	37	2	171323084	171323084	+	Silent	SNP	C	C	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	2	171323084	171323084	C	A	SNP	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	silent	c.2904	p.P968	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909	tier1	-	-	37	0	0.00	29	4	12.12
LINC00200	0	genome.wustl.edu	37	10	1205736	1205736	+	RNA	SNP	A	A	G			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	10	1205736	1205736	A	G	SNP	LINC00200	ENST00000425630	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.155	-	-	-	no_errors	LINC00200	HGNC	ENSG00000229205	tier1	rs60415666	-	18	0	0.00	14	5	26.32
PPP3CC	0	genome.wustl.edu	37	8	22380189	22380189	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	8	22380189	22380189	C	A	SNP	PPP3CC	ENST00000240139	human	ensembl	74_37	+1	known	missense	c.870	p.S290R	1.000	smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CC	HGNC	ENSG00000120910	tier1	-	-	31	0	0.00	26	17	39.53
FAM230A	0	genome.wustl.edu	37	22	20709096	20709096	+	Silent	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	22	20709096	20709096	C	T	SNP	FAM230A	ENST00000434783	human	ensembl	74_37	+1	known	silent	c.828	p.N276	0.029	superfamily_Kinase-like_dom	pfam_Ret-finger_pr-like_3_antisense,superfamily_Kinase-like_dom	-	no_errors	FAM230A	HGNC	ENSG00000188280	tier1	-	-	108	0	0.00	90	16	14.55
LONRF2	0	genome.wustl.edu	37	2	100910724	100910724	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	2	100910724	100910724	C	A	SNP	LONRF2	ENST00000393437	human	ensembl	74_37	-1	known	missense	c.1724	p.R575L	0.999	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_Znf_RING,smart_TPR_repeat,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF2	HGNC	ENSG00000170500	tier1	-	-	76	0	0.00	43	4	8.51
C9orf114	0	genome.wustl.edu	37	9	131591119	131591120	+	Frame_Shift_Ins	INS	-	-	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	9	131591119	131591120	-	T	INS	C9orf114	ENST00000361256	human	ensembl	74_37	-1	known	frame_shift_ins	c.103_102	p.W34fs	1.000:0.998	NULL	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold	-	no_errors	C9orf114	HGNC	ENSG00000198917	tier1			28	0	0.00	19	2	9.52
CAPZA1	0	genome.wustl.edu	37	1	113202197	113202202	+	RNA	DEL	TCTCTC	TCTCTC	-			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	TCTCTC	TCTCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	1	113202197	113202202	TCTCTC	-	DEL	CAPZA1	ENST00000466066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.008:0.000:0.000:0.000:0.000	-	-	-	no_errors	CAPZA1	HGNC	ENSG00000116489	tier1			NA	NA	NA	NA	NA	NA
CDH12	0	genome.wustl.edu	37	5	21765143	21765143	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	5	21765143	21765143	G	A	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.1459	p.P487S	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	tier1	-	-	47	0	0.00	113	10	8.13
CUX1	0	genome.wustl.edu	37	7	101844917	101844917	+	Frame_Shift_Del	DEL	C	C	-			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	7	101844917	101844917	C	-	DEL	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	frame_shift_del	c.2373	p.P793fs	0.983	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923	tier1			64	0	0.00	25	3	10.71
RRN3P2	0	genome.wustl.edu	37	16	29088081	29088081	+	RNA	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	16	29088081	29088081	C	T	SNP	RRN3P2	ENST00000427965	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	RRN3P2	HGNC	ENSG00000103472	tier1	-	-	98	0	0.00	99	41	29.29
DDX58	0	genome.wustl.edu	37	9	32500870	32500870	+	Silent	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	9	32500870	32500870	G	A	SNP	DDX58	ENST00000379883	human	ensembl	74_37	-1	known	silent	c.174	p.L58	0.070	superfamily_DEATH-like_dom	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DEATH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201	tier1	-	-	48	0	0.00	65	15	18.75
SDK2	0	genome.wustl.edu	37	17	71415397	71415397	+	Silent	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	17	71415397	71415397	G	A	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	silent	c.2094	p.I698	0.873	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188	tier1	-	-	51	0	0.00	50	11	18.03
ACADVL	0	genome.wustl.edu	37	17	7123240	7123241	+	RNA	INS	-	-	GGGCGTGCAGGACGC			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	17	7123240	7123241	-	GGGCGTGCAGGACGC	INS	ACADVL	ENST00000577857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ACADVL	HGNC	ENSG00000072778	tier1			NA	NA	NA	NA	NA	NA
VAC14	0	genome.wustl.edu	37	16	70765497	70765497	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	16	70765497	70765497	G	T	SNP	VAC14	ENST00000261776	human	ensembl	74_37	-1	known	missense	c.1562	p.P521H	1.000	superfamily_ARM-type_fold	pfam_VAC14_Fig4p-bd,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	VAC14	HGNC	ENSG00000103043	tier1	-	-	48	0	0.00	28	4	12.50
BCL9L	0	genome.wustl.edu	37	11	118771359	118771359	+	Silent	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	11	118771359	118771359	G	A	SNP	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	silent	c.3093	p.N1031	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	tier1	-	-	24	0	0.00	7	15	68.18
AMPD3	0	genome.wustl.edu	37	11	10500123	10500123	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	11	10500123	10500123	C	T	SNP	AMPD3	ENST00000396553	human	ensembl	74_37	+1	known	missense	c.272	p.P91L	1.000	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805	tier1	-	-	37	0	0.00	43	14	24.56
FLNC	0	genome.wustl.edu	37	7	128490862	128490862	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	7	128490862	128490862	G	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.5404	p.V1802M	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	tier1	-	-	44	0	0.00	16	13	44.83
IFNW1	0	genome.wustl.edu	37	9	21141089	21141089	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	9	21141089	21141089	C	T	SNP	IFNW1	ENST00000380229	human	ensembl	74_37	-1	known	missense	c.481	p.D161N	0.019	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNW1	HGNC	ENSG00000177047	tier1	-	-	46	0	0.00	65	13	16.67
HAVCR1	0	genome.wustl.edu	37	5	156482233	156482233	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	5	156482233	156482233	C	T	SNP	HAVCR1	ENST00000425854	human	ensembl	74_37	-1	known	missense	c.358	p.V120I	0.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	HAVCR1	HGNC	ENSG00000113249	tier1	-	-	44	0	0.00	36	9	20.00
AGBL5	0	genome.wustl.edu	37	2	27278614	27278614	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	2	27278614	27278614	G	A	SNP	AGBL5	ENST00000360131	human	ensembl	74_37	+1	known	missense	c.973	p.A325T	0.994	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693	tier1	-	-	20	0	0.00	15	4	21.05
PAFAH1B3	0	genome.wustl.edu	37	19	42804136	42804136	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	19	42804136	42804136	G	A	SNP	PAFAH1B3	ENST00000262890	human	ensembl	74_37	-1	known	missense	c.394	p.R132W	1.000	NULL	NULL	-	no_errors	PAFAH1B3	HGNC	ENSG00000079462	tier1	rs200814337	-	58	0	0.00	33	8	19.51
POLQ	0	genome.wustl.edu	37	3	121200587	121200587	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	3	121200587	121200587	G	T	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	missense	c.6043	p.H2015N	0.914	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	tier1	-	-	32	0	0.00	27	4	12.90
ZNF358	0	genome.wustl.edu	37	19	7584581	7584581	+	Silent	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	19	7584581	7584581	C	T	SNP	ZNF358	ENST00000394341	human	ensembl	74_37	+1	known	silent	c.453	p.F151	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF358	HGNC	ENSG00000198816	tier1	-	-	22	0	0.00	31	8	20.51
ENSG00000260158	0	genome.wustl.edu	37	16	32822096	32822096	+	RNA	SNP	C	C	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	16	32822096	32822096	C	A	SNP	ENSG00000260158	ENST00000569859	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.676	-	-	-	no_errors	RP11-67H24.2	Clone_based_vega_gene	ENSG00000260158	tier1	-	-	10	0	0.00	14	12	46.15
CCL20	0	genome.wustl.edu	37	2	228680154	228680155	+	RNA	DEL	TT	TT	-			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	2	228680154	228680155	TT	-	DEL	CCL20	ENST00000473642	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010:0.011	-	-	-	no_errors	CCL20	HGNC	ENSG00000115009	tier1			20	0	0.00	23	3	11.54
TMC1	0	genome.wustl.edu	37	9	75451136	75451137	+	RNA	INS	-	-	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	9	75451136	75451137	-	T	INS	TMC1	ENST00000486417	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	TMC1	HGNC	ENSG00000165091	tier1			10	0	0.00	18	4	18.18
TP53	0	genome.wustl.edu	37	17	7577046	7577046	+	Nonsense_Mutation	SNP	C	C	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	17	7577046	7577046	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.892	p.E298*	0.001	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	62	0	0.00	22	51	68.92
ENSG00000196566	0	genome.wustl.edu	37	10	89419638	89419639	+	RNA	INS	-	-	GCT			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	10	89419638	89419639	-	GCT	INS	ENSG00000196566	ENST00000354527	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-57C13.3	Clone_based_vega_gene	ENSG00000196566	tier1			13	0	0.00	5	5	50.00
KIAA0947	0	genome.wustl.edu	37	5	5460964	5460964	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	5	5460964	5460964	G	A	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	missense	c.1517	p.R506Q	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	tier1	-	-	31	0	0.00	55	10	15.38
ARHGAP32	0	genome.wustl.edu	37	11	128934794	128934794	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	11	128934794	128934794	C	T	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	missense	c.662	p.R221H	1.000	pfam_Phox,superfamily_Phox	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909	tier1	-	-	62	0	0.00	52	10	16.13
SLC4A9	0	genome.wustl.edu	37	5	139751126	139751126	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	5	139751126	139751126	C	A	SNP	SLC4A9	ENST00000230993	human	ensembl	74_37	+1	known	missense	c.2659	p.L887I	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073	tier1	-	-	27	0	0.00	25	6	19.35
MYLK2	0	genome.wustl.edu	37	20	30418869	30418869	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	20	30418869	30418869	C	T	SNP	MYLK2	ENST00000375985	human	ensembl	74_37	+1	known	missense	c.1349	p.S450L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306	tier1	-	-	84	0	0.00	159	32	16.67
NEB	0	genome.wustl.edu	37	2	152548372	152548377	+	Splice_Site	DEL	ACTTAC	ACTTAC	-			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	ACTTAC	ACTTAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	2	152548372	152548377	ACTTAC	-	DEL	NEB	ENST00000397345	human	ensembl	74_37	-1	known	splice_site_del	c.2211+1_2211+1	e21+1	0.753:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors	NEB	HGNC	ENSG00000183091	tier1			NA	NA	NA	NA	NA	NA
RASGRF1	0	genome.wustl.edu	37	15	79350742	79350742	+	Silent	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	15	79350742	79350742	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	silent	c.465	p.T155	0.009	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	tier1	-	-	40	0	0.00	22	7	24.14
AGFG2	0	genome.wustl.edu	37	7	100163512	100163512	+	RNA	DEL	C	C	-			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	7	100163512	100163512	C	-	DEL	AGFG2	ENST00000474713	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	AGFG2	HGNC	ENSG00000106351	tier1			28	0	0.00	38	4	9.52
IPO5	0	genome.wustl.edu	37	13	98655019	98655019	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	13	98655019	98655019	C	T	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.1369	p.H457Y	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150	tier1	-	-	11	0	0.00	12	10	45.45
IGSF22	0	genome.wustl.edu	37	11	18729766	18729766	+	Silent	SNP	A	A	G			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	11	18729766	18729766	A	G	SNP	IGSF22	ENST00000513874	human	ensembl	74_37	-1	known	silent	c.3075	p.H1025	0.002	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF22	HGNC	ENSG00000179057	tier1	-	-	39	0	0.00	34	8	19.05
HDAC7	0	genome.wustl.edu	37	12	48189100	48189100	+	Missense_Mutation	SNP	G	G	C			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	12	48189100	48189100	G	C	SNP	HDAC7	ENST00000380610	human	ensembl	74_37	-1	known	missense	c.1202	p.S401C	0.883	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC7	HGNC	ENSG00000061273	tier1	-	-	96	0	0.00	43	44	50.57
PRICKLE2	0	genome.wustl.edu	37	3	64133374	64133374	+	Silent	SNP	G	G	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	3	64133374	64133374	G	T	SNP	PRICKLE2	ENST00000295902	human	ensembl	74_37	-1	known	silent	c.792	p.I264	0.090	pfam_Znf_LIM,smart_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637	tier1	-	-	23	0	0.00	23	4	14.81
IKZF4	0	genome.wustl.edu	37	12	56427018	56427018	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	12	56427018	56427018	C	T	SNP	IKZF4	ENST00000262032	human	ensembl	74_37	+1	known	missense	c.910	p.H304Y	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF4	HGNC	ENSG00000123411	tier1	-	-	43	0	0.00	35	14	28.57
PTPN18	0	genome.wustl.edu	37	2	131128341	131128341	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	2	131128341	131128341	G	A	SNP	PTPN18	ENST00000175756	human	ensembl	74_37	+1	known	missense	c.820	p.A274T	0.001	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN18	HGNC	ENSG00000072135	tier1	-	-	42	0	0.00	26	9	25.71
ACOT11	0	genome.wustl.edu	37	1	55050380	55050380	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	1	55050380	55050380	C	T	SNP	ACOT11	ENST00000371316	human	ensembl	74_37	+1	known	missense	c.86	p.A29V	0.014	NULL	pfam_START_lipid-bd_dom,pfam_Thioestr_supf,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	ACOT11	HGNC	ENSG00000162390	tier1	rs150203501	-	65	0	0.00	15	33	68.75
ENSG00000229481	0	genome.wustl.edu	37	19	38321666	38321666	+	RNA	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	19	38321666	38321666	G	A	SNP	ENSG00000229481	ENST00000443870	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.099	-	-	-	no_errors	CTD-2554C21.3	Clone_based_vega_gene	ENSG00000229481	tier1	-	-	42	0	0.00	36	5	12.20
ENSG00000267260	0	genome.wustl.edu	37	19	37266356	37266356	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	19	37266356	37266356	C	T	SNP	ENSG00000267260	ENST00000590750	human	ensembl	74_37	+1	putative	missense	c.202	p.R68C	0.029	NULL	NULL	-	no_errors	CTD-2162K18.4	Clone_based_vega_gene	ENSG00000267260	tier1	-	-	115	0	0.00	56	35	38.46
CARD10	0	genome.wustl.edu	37	22	37904671	37904671	+	Frame_Shift_Del	DEL	C	C	-			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	22	37904671	37904671	C	-	DEL	CARD10	ENST00000251973	human	ensembl	74_37	-1	known	frame_shift_del	c.928	p.A310fs	0.999	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065	tier1			16	0	0.00	22	2	8.33
PAX6	0	genome.wustl.edu	37	11	31823240	31823240	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5V9-01A-11D-A32I-09	TCGA-QQ-A5V9-11A-31D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ae3de4e-4700-435a-add1-586224c5838b	f3212ce3-7a66-415a-9ef8-f1669ed8940e	11	31823240	31823240	G	A	SNP	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	missense	c.268	p.P90S	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372	tier1	-	-	54	0	0.00	57	14	19.72
