Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
BPIFB3	0	genome.wustl.edu	37	20	31643232	31643232	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	20	31643232	31643232	G	T	SNP	BPIFB3	ENST00000375494	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	0.182	NULL	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB3	HGNC	ENSG00000186190	tier1	-	-	31	0	0.00	18	20	52.63
SHANK2	0	genome.wustl.edu	37	11	70332048	70332048	+	Silent	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	11	70332048	70332048	C	A	SNP	SHANK2	ENST00000338508	human	ensembl	74_37	-1	known	silent	c.4353	p.S1451	0.015	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	tier1	-	-	33	0	0.00	45	19	29.69
MTND1P15	0	genome.wustl.edu	37	17	22024247	22024247	+	RNA	SNP	A	A	G			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	17	22024247	22024247	A	G	SNP	MTND1P15	ENST00000579693	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.988	-	-	-	no_errors	MTND1P15	HGNC	ENSG00000264168	tier1	-	-	31	0	0.00	19	18	48.65
CC2D2B	0	genome.wustl.edu	37	10	97728636	97728636	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	10	97728636	97728636	G	T	SNP	CC2D2B	ENST00000472454	human	ensembl	74_37	+1	novel	missense	c.614	p.W205L	1.000	NULL	NULL	-	no_errors	RP11-248J23.6	Clone_based_vega_gene	ENSG00000269948	tier1	-	-	32	0	0.00	29	4	12.12
KIAA0922	0	genome.wustl.edu	37	4	154544148	154544148	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	4	154544148	154544148	C	T	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	missense	c.3958	p.R1320W	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	tier1	rs148556115	GMAF=0.0005	16	0	0.00	13	6	31.58
RBM19	0	genome.wustl.edu	37	12	114384227	114384227	+	Silent	SNP	A	A	G			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	12	114384227	114384227	A	G	SNP	RBM19	ENST00000261741	human	ensembl	74_37	-1	known	silent	c.1461	p.D487	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965	tier1	-	-	48	0	0.00	19	9	32.14
ESPNP	0	genome.wustl.edu	37	1	17034456	17034463	+	RNA	DEL	GCGCGCGT	GCGCGCGT	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	GCGCGCGT	GCGCGCGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	1	17034456	17034463	GCGCGCGT	-	DEL	ESPNP	ENST00000492551	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000:0.990:0.984:0.981:0.981:0.989:0.998	-	-	-	no_errors	ESPNP	HGNC	ENSG00000268869	tier1			NA	NA	NA	NA	NA	NA
ENSG00000261238	0	genome.wustl.edu	37	16	51183170	51183171	+	RNA	INS	-	-	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	16	51183170	51183171	-	T	INS	ENSG00000261238	ENST00000570060	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.007	-	-	-	no_errors	AC009166.5	Clone_based_vega_gene	ENSG00000261238	tier1			32	0	0.00	23	3	11.54
RPTN	0	genome.wustl.edu	37	1	152128045	152128045	+	Silent	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	1	152128045	152128045	G	A	SNP	RPTN	ENST00000316073	human	ensembl	74_37	-1	known	silent	c.1530	p.H510	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	RPTN	HGNC	ENSG00000215853	tier1	-	-	141	0	0.00	325	92	22.06
GJD3	0	genome.wustl.edu	37	17	38517389	38517389	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	17	38517389	38517389	G	A	SNP	GJD3	ENST00000337376	human	ensembl	74_37	-1	known	missense	c.737	p.P246L	0.158	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJD3	HGNC	ENSG00000183153	tier1	-	-	21	0	0.00	31	15	32.61
C6	0	genome.wustl.edu	37	5	41153915	41153915	+	Missense_Mutation	SNP	T	T	C			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	5	41153915	41153915	T	C	SNP	C6	ENST00000263413	human	ensembl	74_37	-1	known	missense	c.2287	p.K763E	0.998	pfscan_Sushi_SCR_CCP	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537	tier1	-	-	58	0	0.00	45	20	30.77
RNF8	0	genome.wustl.edu	37	6	37321910	37321910	+	RNA	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	6	37321910	37321910	G	A	SNP	RNF8	ENST00000479516	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNF8	HGNC	ENSG00000112130	tier1	-	-	13	0	0.00	13	6	31.58
DGKG	0	genome.wustl.edu	37	3	185979537	185979537	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	185979537	185979537	G	T	SNP	DGKG	ENST00000265022	human	ensembl	74_37	-1	known	missense	c.1300	p.P434T	1.000	smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	tier1	-	-	81	0	0.00	45	47	51.09
CSPG4P8	0	genome.wustl.edu	37	15	82764545	82764545	+	RNA	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	15	82764545	82764545	C	T	SNP	CSPG4P8	ENST00000342039	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	CSPG4P8	HGNC	ENSG00000188384	tier1	-	-	9	0	0.00	1	8	88.89
ASXL1	0	genome.wustl.edu	37	20	31022346	31022346	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	20	31022346	31022346	G	A	SNP	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	missense	c.1831	p.A611T	0.406	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	tier1	-	-	77	0	0.00	84	32	27.59
MS4A2	0	genome.wustl.edu	37	11	59857211	59857211	+	Missense_Mutation	SNP	T	T	C			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	11	59857211	59857211	T	C	SNP	MS4A2	ENST00000278888	human	ensembl	74_37	+1	known	missense	c.103	p.S35P	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A2	HGNC	ENSG00000149534	tier1	-	-	38	0	0.00	25	19	43.18
EXOC7	0	genome.wustl.edu	37	17	74079821	74079821	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	17	74079821	74079821	C	T	SNP	EXOC7	ENST00000335146	human	ensembl	74_37	-1	known	missense	c.2116	p.V706M	1.000	pfam_Exo70,superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473	tier1	-	-	28	0	0.00	25	12	32.43
SVEP1	0	genome.wustl.edu	37	9	113139339	113139349	+	RNA	DEL	TTAGATGGATC	TTAGATGGATC	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	TTAGATGGATC	TTAGATGGATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	9	113139339	113139349	TTAGATGGATC	-	DEL	SVEP1	ENST00000476205	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.002:0.000:0.000:0.006:0.013:0.026:0.029:0.025:0.023:0.001	-	-	-	no_errors	SVEP1	HGNC	ENSG00000165124	tier1			NA	NA	NA	NA	NA	NA
ACAD11	0	genome.wustl.edu	37	3	132378670	132378670	+	RNA	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	132378670	132378670	G	T	SNP	ACAD11	ENST00000489991	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACAD11	HGNC	ENSG00000240303	tier1	-	-	20	0	0.00	10	3	23.08
PTK2B	0	genome.wustl.edu	37	8	27297937	27297937	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	8	27297937	27297937	C	T	SNP	PTK2B	ENST00000346049	human	ensembl	74_37	+1	known	missense	c.2018	p.T673I	0.994	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899	tier1	-	-	34	0	0.00	39	4	9.30
DNM1P46	0	genome.wustl.edu	37	15	100332256	100332256	+	RNA	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	15	100332256	100332256	C	T	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.039	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397	tier1	-	-	67	0	0.00	40	59	59.60
PCF11	0	genome.wustl.edu	37	11	82880377	82880377	+	Silent	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	11	82880377	82880377	C	T	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	silent	c.3000	p.V1000	0.276	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494	tier1	-	-	62	0	0.00	43	15	25.86
ENSG00000228463	0	genome.wustl.edu	37	1	234399	234399	+	RNA	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	1	234399	234399	G	A	SNP	ENSG00000228463	ENST00000442116	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	AP006222.2	Clone_based_vega_gene	ENSG00000228463	tier1	-	-	56	0	0.00	43	15	25.86
NAV3	0	genome.wustl.edu	37	12	78334106	78334106	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	12	78334106	78334106	C	T	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.251	p.T84I	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	tier1	-	-	23	0	0.00	20	6	23.08
CDH5	0	genome.wustl.edu	37	16	66423366	66423366	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	16	66423366	66423366	C	T	SNP	CDH5	ENST00000341529	human	ensembl	74_37	+1	known	missense	c.722	p.T241M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH5	HGNC	ENSG00000179776	tier1	-	-	38	0	0.00	7	19	73.08
NOP56	0	genome.wustl.edu	37	20	2633399	2633404	+	RNA	DEL	GCCTGC	GCCTGC	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	GCCTGC	GCCTGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	20	2633399	2633404	GCCTGC	-	DEL	NOP56	ENST00000469588	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.002:0.002:0.002:0.001:0.000	-	-	-	no_errors	NOP56	HGNC	ENSG00000101361	tier1			NA	NA	NA	NA	NA	NA
VPS13D	0	genome.wustl.edu	37	1	12382722	12382722	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	1	12382722	12382722	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.7834	p.V2612I	0.000	superfamily_UBA-like	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	tier1	rs139303925	-	41	0	0.00	23	24	51.06
NUMBL	0	genome.wustl.edu	37	19	41173893	41173898	+	In_Frame_Del	DEL	TGCTGT	TGCTGT	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	TGCTGT	TGCTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	19	41173893	41173898	TGCTGT	-	DEL	NUMBL	ENST00000252891	human	ensembl	74_37	-1	known	in_frame_del	c.1310_1305	p.QQ439in_frame_del	1.000:1.000:1.000:1.000:1.000:0.998	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pirsf_Numb/numb-like,pfscan_PTB/PI_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245	tier1			NA	NA	NA	NA	NA	NA
PARP8	0	genome.wustl.edu	37	5	50130780	50130780	+	Missense_Mutation	SNP	A	A	C			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	5	50130780	50130780	A	C	SNP	PARP8	ENST00000281631	human	ensembl	74_37	+1	known	missense	c.2393	p.D798A	1.000	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	tier1	-	-	35	0	0.00	43	18	29.51
MYH10	0	genome.wustl.edu	37	17	8383788	8383788	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	17	8383788	8383788	C	T	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.5290	p.E1764K	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	tier1	-	-	27	0	0.00	13	12	48.00
TOP2B	0	genome.wustl.edu	37	3	25685245	25685245	+	Missense_Mutation	SNP	T	T	C			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	25685245	25685245	T	C	SNP	TOP2B	ENST00000264331	human	ensembl	74_37	-1	known	missense	c.271	p.M91V	1.000	superfamily_HATPase_ATP-bd	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2B	HGNC	ENSG00000077097	tier1	-	-	73	0	0.00	36	19	34.55
SPATA31D3	0	genome.wustl.edu	37	9	84563040	84563040	+	RNA	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	9	84563040	84563040	C	A	SNP	SPATA31D3	ENST00000334208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	SPATA31D3	HGNC	ENSG00000186788	tier1	-	-	48	0	0.00	43	14	24.56
ENSG00000266535	0	genome.wustl.edu	37	17	31439098	31439099	+	RNA	DEL	AG	AG	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	17	31439098	31439099	AG	-	DEL	ENSG00000266535	ENST00000584688	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.563:0.970	-	-	-	no_errors	RP11-40A13.1	Clone_based_vega_gene	ENSG00000266535	tier1			25	0	0.00	19	2	9.52
ATP2B1	0	genome.wustl.edu	37	12	90028611	90028611	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	12	90028611	90028611	G	A	SNP	ATP2B1	ENST00000261173	human	ensembl	74_37	-1	known	missense	c.731	p.T244I	1.000	pfam_ATPase_P-typ_transduc_dom_A,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961	tier1	-	-	25	0	0.00	62	33	34.38
HLA-DQB2	0	genome.wustl.edu	37	6	32726804	32726804	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	6	32726804	32726804	G	A	SNP	HLA-DQB2	ENST00000435145	human	ensembl	74_37	-1	known	missense	c.469	p.R157W	0.166	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_II_b_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DQB2	HGNC	ENSG00000232629	tier1	-	-	39	0	0.00	44	41	48.24
SNHG7	0	genome.wustl.edu	37	9	139620999	139621003	+	RNA	DEL	TGACC	TGACC	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	TGACC	TGACC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	9	139620999	139621003	TGACC	-	DEL	SNHG7	ENST00000447221	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001:0.000:0.000:0.000	-	-	-	no_errors	SNHG7	HGNC	ENSG00000233016	tier1			NA	NA	NA	NA	NA	NA
KDM5C	0	genome.wustl.edu	37	X	53223903	53223903	+	Missense_Mutation	SNP	C	C	G			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	X	53223903	53223903	C	G	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	missense	c.3456	p.E1152D	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	tier1	-	-	29	0	0.00	14	15	51.72
NPTX1	0	genome.wustl.edu	37	17	78447139	78447139	+	Missense_Mutation	SNP	A	A	G			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	17	78447139	78447139	A	G	SNP	NPTX1	ENST00000306773	human	ensembl	74_37	-1	known	missense	c.758	p.F253S	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX1	HGNC	ENSG00000171246	tier1	-	-	44	0	0.00	42	15	26.32
PASK	0	genome.wustl.edu	37	2	242047682	242047682	+	Silent	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	2	242047682	242047682	C	A	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	silent	c.3588	p.L1196	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	tier1	-	-	29	0	0.00	24	13	35.14
NF1	0	genome.wustl.edu	37	17	29667612	29667632	+	In_Frame_Del	DEL	TCTTGAACAAAACCTGCATAC	TCTTGAACAAAACCTGCATAC	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	TCTTGAACAAAACCTGCATAC	TCTTGAACAAAACCTGCATAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	17	29667612	29667632	TCTTGAACAAAACCTGCATAC	-	DEL	NF1	ENST00000358273	human	ensembl	74_37	+1	known	in_frame_del	c.7011_7031	p.EQNLHTL2339in_frame_del	0.993:1.000:1.000:0.436:1.000:1.000:0.970:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	tier1			NA	NA	NA	NA	NA	NA
NF1	0	genome.wustl.edu	37	17	29667610	29667610	+	Frame_Shift_Del	DEL	C	C	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	17	29667610	29667610	C	-	DEL	NF1	ENST00000358273	human	ensembl	74_37	+1	known	frame_shift_del	c.7009	p.L2337fs	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	tier1			45	0	0.00	7	9	56.25
FAM182B	0	genome.wustl.edu	37	20	25755685	25755685	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	20	25755685	25755685	C	T	SNP	FAM182B	ENST00000376403	human	ensembl	74_37	-1	putative	missense	c.271	p.E91K	0.139	NULL	NULL	-	no_errors	FAM182B	HGNC	ENSG00000175170	tier1	-	-	91	0	0.00	77	30	28.04
PCDH17	0	genome.wustl.edu	37	13	58206991	58206991	+	Missense_Mutation	SNP	T	T	C			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	13	58206991	58206991	T	C	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.311	p.L104P	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946	tier1	-	-	22	0	0.00	5	10	66.67
GAS6	0	genome.wustl.edu	37	13	114549526	114549526	+	Frame_Shift_Del	DEL	T	T	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	13	114549526	114549526	T	-	DEL	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	frame_shift_del	c.317	p.N106fs	0.003	superfamily_GLA_domain	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087	tier1			28	0	0.00	23	4	14.81
ATP8A1	0	genome.wustl.edu	37	4	42554560	42554560	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	4	42554560	42554560	C	T	SNP	ATP8A1	ENST00000381668	human	ensembl	74_37	-1	known	missense	c.1481	p.R494Q	1.000	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A1	HGNC	ENSG00000124406	tier1	-	-	30	0	0.00	46	7	13.21
ADAM28	0	genome.wustl.edu	37	8	24157585	24157585	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	8	24157585	24157585	C	A	SNP	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	missense	c.145	p.Q49K	0.084	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980	tier1	-	-	33	0	0.00	23	12	34.29
ZFP42	0	genome.wustl.edu	37	4	188924482	188924482	+	Missense_Mutation	SNP	A	A	G			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	4	188924482	188924482	A	G	SNP	ZFP42	ENST00000326866	human	ensembl	74_37	+1	known	missense	c.521	p.K174R	0.599	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP42	HGNC	ENSG00000179059	tier1	-	-	14	0	0.00	22	6	21.43
HOXA4	0	genome.wustl.edu	37	7	27169165	27169165	+	Missense_Mutation	SNP	C	C	G			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	7	27169165	27169165	C	G	SNP	HOXA4	ENST00000360046	human	ensembl	74_37	-1	known	missense	c.642	p.E214D	1.000	superfamily_Homeodomain-like,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA4	HGNC	ENSG00000197576	tier1	-	-	25	0	0.00	2	18	90.00
KLK13	0	genome.wustl.edu	37	19	51563083	51563083	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	19	51563083	51563083	C	A	SNP	KLK13	ENST00000595793	human	ensembl	74_37	-1	known	missense	c.507	p.Q169H	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK13	HGNC	ENSG00000167759	tier1	-	-	53	0	0.00	52	27	34.18
ZCCHC9	0	genome.wustl.edu	37	5	80604773	80604773	+	Missense_Mutation	SNP	C	C	G			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	5	80604773	80604773	C	G	SNP	ZCCHC9	ENST00000254037	human	ensembl	74_37	+1	known	missense	c.544	p.P182A	1.000	superfamily_Znf_CCHC	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC9	HGNC	ENSG00000131732	tier1	-	-	51	0	0.00	41	6	12.77
SETD2	0	genome.wustl.edu	37	3	47163488	47163488	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	47163488	47163488	C	A	SNP	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	missense	c.2638	p.A880S	0.944	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555	tier1	-	-	25	0	0.00	21	3	12.50
MYO6	0	genome.wustl.edu	37	6	76617358	76617358	+	Silent	SNP	T	T	C			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	6	76617358	76617358	T	C	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	silent	c.3243	p.G1081	0.992	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	tier1	-	-	50	0	0.00	25	25	50.00
ENSG00000236233	0	genome.wustl.edu	37	9	67793766	67793766	+	RNA	DEL	A	A	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	9	67793766	67793766	A	-	DEL	ENSG00000236233	ENST00000315762	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	RP11-12A20.7	Clone_based_vega_gene	ENSG00000236233	tier1			8	0	0.00	10	5	33.33
LOC101929847	0	genome.wustl.edu	37	15	84873329	84873329	+	RNA	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	15	84873329	84873329	C	T	SNP	LOC101929847	ENST00000561015	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.219	-	-	-	no_errors	AC103965.1	Clone_based_vega_gene	ENSG00000225151	tier1	-	-	13	0	0.00	16	10	38.46
MUC1	0	genome.wustl.edu	37	1	155161899	155161899	+	Silent	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	1	155161899	155161899	G	A	SNP	MUC1	ENST00000368395	human	ensembl	74_37	-1	known	silent	c.234	p.V78	0.019	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC1	HGNC	ENSG00000185499	tier1	-	-	14	0	0.00	1	25	96.15
NLRP11	0	genome.wustl.edu	37	19	56320357	56320357	+	Missense_Mutation	SNP	G	G	C			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	19	56320357	56320357	G	C	SNP	NLRP11	ENST00000443188	human	ensembl	74_37	-1	known	missense	c.1619	p.T540R	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873	tier1	-	-	18	0	0.00	6	4	40.00
AKR7L	0	genome.wustl.edu	37	1	19593931	19593931	+	Silent	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	1	19593931	19593931	G	A	SNP	AKR7L	ENST00000420396	human	ensembl	74_37	-1	known	silent	c.325	p.L109	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR7L	HGNC	ENSG00000211454	tier1	-	-	50	0	0.00	34	27	44.26
MAGI1	0	genome.wustl.edu	37	3	65342712	65342712	+	Missense_Mutation	SNP	A	A	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	65342712	65342712	A	T	SNP	MAGI1	ENST00000402939	human	ensembl	74_37	-1	known	missense	c.3730	p.S1244T	1.000	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276	tier1	-	-	32	0	0.00	0	15	93.75
ENSG00000221672	0	genome.wustl.edu	37	22	47243850	47243855	+	RNA	DEL	GTGCGC	GTGCGC	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	GTGCGC	GTGCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	22	47243850	47243855	GTGCGC	-	DEL	ENSG00000221672	ENST00000408745	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.002:0.003:0.004:0.001:0.001:0.001	-	-	-	no_errors	Z97351.1	Clone_based_ensembl_gene	ENSG00000221672	tier1			NA	NA	NA	NA	NA	NA
LOC100287177	0	genome.wustl.edu	37	19	46145741	46145741	+	Silent	SNP	A	A	G			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	19	46145741	46145741	A	G	SNP	LOC100287177	ENST00000593161	human	ensembl	74_37	+1	putative	silent	c.282	p.G94	0.068	NULL	NULL	-	no_errors	AC006132.1	Clone_based_vega_gene	ENSG00000267757	tier1	-	-	23	0	0.00	22	22	50.00
VPS13A	0	genome.wustl.edu	37	9	79999548	79999550	+	In_Frame_Del	DEL	TGA	TGA	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	TGA	TGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	9	79999548	79999550	TGA	-	DEL	VPS13A	ENST00000357409	human	ensembl	74_37	+1	known	in_frame_del	c.9237_9239	p.D3083in_frame_del	0.999:0.998:0.997	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	tier1			15	0	0.00	16	2	11.11
GLYR1	0	genome.wustl.edu	37	16	4861209	4861209	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	16	4861209	4861209	C	T	SNP	GLYR1	ENST00000321919	human	ensembl	74_37	-1	known	missense	c.1549	p.V517I	1.000	superfamily_6-PGluconate_DH_C-like	pfam_6PGDH_NADP-bd,pfam_PWWP_dom,superfamily_6-PGluconate_DH_C-like,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	GLYR1	HGNC	ENSG00000140632	tier1	-	-	47	0	0.00	45	4	8.16
STARD9	0	genome.wustl.edu	37	15	42985060	42985060	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	15	42985060	42985060	G	A	SNP	STARD9	ENST00000290607	human	ensembl	74_37	+1	known	missense	c.11284	p.E3762K	0.000	NULL	pfam_Kinesin_motor_dom,pfam_START_lipid-bd_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_START_lipid-bd_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	STARD9	HGNC	ENSG00000159433	tier1	-	-	30	0	0.00	38	15	28.30
KPRP	0	genome.wustl.edu	37	1	152733278	152733278	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	1	152733278	152733278	G	A	SNP	KPRP	ENST00000368773	human	ensembl	74_37	+1	known	missense	c.1214	p.R405H	0.049	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786	tier1	-	-	13	0	0.00	4	27	87.10
AIFM1	0	genome.wustl.edu	37	X	129290459	129290459	+	Missense_Mutation	SNP	T	T	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	X	129290459	129290459	T	A	SNP	AIFM1	ENST00000287295	human	ensembl	74_37	-1	known	missense	c.225	p.L75F	0.990	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase	-	no_errors	AIFM1	HGNC	ENSG00000156709	tier1	-	-	59	0	0.00	20	3	13.04
FAT3	0	genome.wustl.edu	37	11	92531098	92531098	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	11	92531098	92531098	C	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.4919	p.S1640Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	tier1	-	-	44	0	0.00	44	4	8.33
AHNAK	0	genome.wustl.edu	37	11	62286369	62286369	+	Missense_Mutation	SNP	T	T	C			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	11	62286369	62286369	T	C	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.15520	p.N5174D	0.569	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	tier1	-	-	31	0	0.00	25	15	37.50
MIR3677	0	genome.wustl.edu	37	16	2320736	2320736	+	RNA	SNP	T	T	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	16	2320736	2320736	T	A	SNP	MIR3677	ENST00000578964	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR3677	HGNC	ENSG00000266643	tier1	-	-	42	0	0.00	42	8	16.00
ZNF728	0	genome.wustl.edu	37	19	23158575	23158575	+	Missense_Mutation	SNP	T	T	G			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	19	23158575	23158575	T	G	SNP	ZNF728	ENST00000594710	human	ensembl	74_37	-1	novel	missense	c.1564	p.N522H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF728	HGNC	ENSG00000269067	tier1	-	-	14	0	0.00	8	18	69.23
ZBED3-AS1	0	genome.wustl.edu	37	5	76442965	76442967	+	RNA	DEL	GAT	GAT	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	5	76442965	76442967	GAT	-	DEL	ZBED3-AS1	ENST00000515356	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:0.998:0.997	-	-	-	no_errors	ZBED3-AS1	HGNC	ENSG00000250802	tier1			14	0	0.00	8	7	46.67
PAX4	0	genome.wustl.edu	37	7	127251688	127251688	+	Nonsense_Mutation	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	7	127251688	127251688	C	A	SNP	PAX4	ENST00000341640	human	ensembl	74_37	-1	known	nonsense	c.790	p.E264*	0.212	NULL	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX4	HGNC	ENSG00000106331	tier1	-	-	32	0	0.00	42	4	8.70
HNRNPA3	0	genome.wustl.edu	37	2	178081298	178081298	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	2	178081298	178081298	G	T	SNP	HNRNPA3	ENST00000392524	human	ensembl	74_37	+1	known	missense	c.621	p.M207I	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA3	HGNC	ENSG00000170144	tier1	-	-	48	0	0.00	53	7	11.67
RXRA	0	genome.wustl.edu	37	9	137328351	137328351	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	9	137328351	137328351	C	A	SNP	RXRA	ENST00000481739	human	ensembl	74_37	+1	known	missense	c.1280	p.S427Y	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Nuc_recep-AF1,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350	tier1	-	-	40	0	0.00	81	15	15.62
SS18	0	genome.wustl.edu	37	18	23612405	23612405	+	Silent	SNP	T	T	C			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	18	23612405	23612405	T	C	SNP	SS18	ENST00000415083	human	ensembl	74_37	-1	known	silent	c.1188	p.G396	1.000	NULL	pfam_SS18_fam	-	no_errors	SS18	HGNC	ENSG00000141380	tier1	-	-	105	0	0.00	55	29	34.52
MMP27	0	genome.wustl.edu	37	11	102567418	102567418	+	Silent	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	11	102567418	102567418	G	T	SNP	MMP27	ENST00000260229	human	ensembl	74_37	-1	known	silent	c.768	p.I256	0.999	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP27	HGNC	ENSG00000137675	tier1	-	-	35	0	0.00	36	4	10.00
APEH	0	genome.wustl.edu	37	3	49717990	49717990	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	49717990	49717990	C	A	SNP	APEH	ENST00000296456	human	ensembl	74_37	+1	known	missense	c.1227	p.S409R	1.000	NULL	pfam_Peptidase_S9,pfam_AB_hydrolase_1,pfam_Dienelactn_hydro	-	no_errors	APEH	HGNC	ENSG00000164062	tier1	-	-	47	0	0.00	28	20	41.67
PKD2	0	genome.wustl.edu	37	4	88929174	88929176	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	4	88929174	88929176	GAG	-	DEL	PKD2	ENST00000237596	human	ensembl	74_37	+1	known	in_frame_del	c.289_291	p.E100in_frame_del	1.000:1.000:1.000	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,pfscan_EF_hand_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2	HGNC	ENSG00000118762	tier1			26	0	0.00	23	2	8.00
TAS1R1	0	genome.wustl.edu	37	1	6637055	6637055	+	Nonsense_Mutation	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	1	6637055	6637055	C	T	SNP	TAS1R1	ENST00000333172	human	ensembl	74_37	+1	known	nonsense	c.1519	p.R507*	0.000	pfam_GPCR_3_9-Cys_dom	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R1	HGNC	ENSG00000173662	tier1	-	-	56	0	0.00	3	41	93.18
FANCC	0	genome.wustl.edu	37	9	98011420	98011420	+	Missense_Mutation	SNP	A	A	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	9	98011420	98011420	A	T	SNP	FANCC	ENST00000289081	human	ensembl	74_37	-1	known	missense	c.154	p.L52M	0.963	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	-	no_errors	FANCC	HGNC	ENSG00000158169	tier1	-	-	27	0	0.00	32	15	31.91
PIWIL1	0	genome.wustl.edu	37	12	130834413	130834413	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	12	130834413	130834413	G	T	SNP	PIWIL1	ENST00000245255	human	ensembl	74_37	+1	known	missense	c.945	p.K315N	0.843	pfam_PAZ_dom,superfamily_PAZ_dom,smart_PAZ_dom,pfscan_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	tier1	-	-	68	0	0.00	72	32	30.77
PPP6R2	0	genome.wustl.edu	37	22	50857777	50857777	+	Splice_Site	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	22	50857777	50857777	G	T	SNP	PPP6R2	ENST00000216061	human	ensembl	74_37	+1	known	splice_site	c.732-1	e6-1	1.000	-	-	-	no_errors	PPP6R2	HGNC	ENSG00000100239	tier1	-	-	32	0	0.00	28	4	12.50
IRF5	0	genome.wustl.edu	37	7	128587589	128587589	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	7	128587589	128587589	C	A	SNP	IRF5	ENST00000357234	human	ensembl	74_37	+1	known	missense	c.787	p.L263M	0.005	superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF5	HGNC	ENSG00000128604	tier1	-	-	33	0	0.00	45	4	8.16
EPM2A	0	genome.wustl.edu	37	6	145948787	145948787	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	6	145948787	145948787	G	A	SNP	EPM2A	ENST00000367519	human	ensembl	74_37	-1	known	missense	c.761	p.A254V	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_CBM_fam20,superfamily_Carb-bd-like_fold,smart_Dual-sp_phosphatase_subgr_cat,pfscan_CBM_fam20,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	EPM2A	HGNC	ENSG00000112425	tier1	rs138798058	-	34	0	0.00	56	19	25.33
MGAM	0	genome.wustl.edu	37	7	141736023	141736023	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	7	141736023	141736023	C	T	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	missense	c.2014	p.R672W	0.918	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	tier1	-	-	56	0	0.00	63	64	50.39
OR9K2	0	genome.wustl.edu	37	12	55524485	55524485	+	Silent	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	12	55524485	55524485	G	A	SNP	OR9K2	ENST00000305377	human	ensembl	74_37	+1	known	silent	c.933	p.L311	0.901	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9K2	HGNC	ENSG00000170605	tier1	-	-	62	0	0.00	60	22	26.83
HOOK1	0	genome.wustl.edu	37	1	60338568	60338568	+	Silent	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	1	60338568	60338568	G	A	SNP	HOOK1	ENST00000371208	human	ensembl	74_37	+1	known	silent	c.2118	p.A706	0.835	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709	tier1	-	-	45	0	0.00	6	38	86.36
RAP2C	0	genome.wustl.edu	37	X	131351130	131351130	+	Missense_Mutation	SNP	A	A	G			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	X	131351130	131351130	A	G	SNP	RAP2C	ENST00000342983	human	ensembl	74_37	-1	known	missense	c.167	p.L56P	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP2C	HGNC	ENSG00000123728	tier1	-	-	49	0	0.00	2	25	92.59
RIMBP3	0	genome.wustl.edu	37	22	20458271	20458271	+	Missense_Mutation	SNP	T	T	C			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	22	20458271	20458271	T	C	SNP	RIMBP3	ENST00000426804	human	ensembl	74_37	-1	known	missense	c.3031	p.I1011V	0.007	superfamily_Fibronectin_type3	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	RIMBP3	HGNC	ENSG00000196622	tier1	-	-	61	0	0.00	61	22	26.51
LHCGR	0	genome.wustl.edu	37	2	48982755	48982756	+	In_Frame_Ins	INS	-	-	GCTGCA			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	2	48982755	48982756	-	GCTGCA	INS	LHCGR	ENST00000294954	human	ensembl	74_37	-1	known	in_frame_ins	c.56_55	p.19in_frame_insLQ	0.000:0.001	prints_TSH_rcpt	pfam_GPCR_Rhodpsn,prints_LSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LHCGR	HGNC	ENSG00000138039	tier1			NA	NA	NA	NA	NA	NA
FOXP1	0	genome.wustl.edu	37	3	71008341	71008342	+	RNA	INS	-	-	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	71008341	71008342	-	T	INS	FOXP1	ENST00000460805	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.616:0.439	-	-	-	no_errors	FOXP1	HGNC	ENSG00000114861	tier1			41	0	0.00	32	4	11.11
TESK2	0	genome.wustl.edu	37	1	45809609	45809610	+	RNA	INS	-	-	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	1	45809609	45809610	-	A	INS	TESK2	ENST00000486676	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.501:0.794	-	-	-	no_errors	TESK2	HGNC	ENSG00000070759	tier1			40	0	0.00	45	6	11.76
TTN	0	genome.wustl.edu	37	2	179623770	179623770	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	2	179623770	179623770	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.10244	p.T3415K	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	37	0	0.00	8	23	74.19
ENSG00000223200	0	genome.wustl.edu	37	5	60853135	60853135	+	RNA	SNP	T	T	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	5	60853135	60853135	T	A	SNP	ENSG00000223200	ENST00000411268	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.281	-	-	-	no_errors	AC008836.1	Clone_based_ensembl_gene	ENSG00000223200	tier1	-	-	22	0	0.00	24	7	22.58
ENSG00000215941	0	genome.wustl.edu	37	3	38948822	38948841	+	RNA	DEL	TGTGTGTGTGTGTATATATC	TGTGTGTGTGTGTATATATC	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	TGTGTGTGTGTGTATATATC	TGTGTGTGTGTGTATATATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	38948822	38948841	TGTGTGTGTGTGTATATATC	-	DEL	ENSG00000215941	ENST00000401122	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.193:0.195:0.137:0.126:0.125:0.119:0.107:0.069:0.062:0.049:0.028:0.020:0.007:0.002:0.001:0.001:0.002:0.002:0.002:0.001	-	-	-	no_errors	AC116038.1	Clone_based_ensembl_gene	ENSG00000215941	tier1			NA	NA	NA	NA	NA	NA
ENSG00000236233	0	genome.wustl.edu	37	9	67793683	67793684	+	RNA	INS	-	-	CT			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	9	67793683	67793684	-	CT	INS	ENSG00000236233	ENST00000315762	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.063:0.065	-	-	-	no_errors	RP11-12A20.7	Clone_based_vega_gene	ENSG00000236233	tier1			16	0	0.00	15	7	31.82
FRMPD2	0	genome.wustl.edu	37	10	49371536	49371536	+	Missense_Mutation	SNP	T	T	C			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	10	49371536	49371536	T	C	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	missense	c.3716	p.Q1239R	0.011	NULL	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	tier1	-	-	36	0	0.00	19	14	41.18
C12orf66	0	genome.wustl.edu	37	12	64588028	64588028	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	12	64588028	64588028	G	T	SNP	C12orf66	ENST00000398055	human	ensembl	74_37	-1	known	missense	c.932	p.A311D	1.000	pfam_DUF2003	pfam_DUF2003	-	no_errors	C12orf66	HGNC	ENSG00000174206	tier1	-	-	29	0	0.00	38	4	9.52
PKHD1	0	genome.wustl.edu	37	6	51923201	51923201	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	6	51923201	51923201	G	T	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.1432	p.L478M	1.000	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	tier1	-	-	32	0	0.00	54	25	31.65
EOGT	0	genome.wustl.edu	37	3	69026829	69026829	+	Silent	SNP	A	A	G			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	69026829	69026829	A	G	SNP	EOGT	ENST00000383701	human	ensembl	74_37	-1	known	silent	c.1524	p.A508	0.997	NULL	pfam_Glycosyltransferase_AER61	-	no_errors	EOGT	HGNC	ENSG00000163378	tier1	-	-	57	0	0.00	8	76	90.48
QRICH1	0	genome.wustl.edu	37	3	49114374	49114374	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	49114374	49114374	C	A	SNP	QRICH1	ENST00000357496	human	ensembl	74_37	-1	known	missense	c.77	p.R26M	1.000	superfamily_DEATH-like_dom	pfam_DUF3504,superfamily_DEATH-like_dom	-	no_errors	QRICH1	HGNC	ENSG00000198218	tier1	-	-	43	0	0.00	40	4	9.09
CCDC168	0	genome.wustl.edu	37	13	103386903	103386903	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	13	103386903	103386903	C	A	SNP	CCDC168	ENST00000322527	human	ensembl	74_37	-1	known	missense	c.2257	p.D753Y	0.000	NULL	NULL	-	no_errors	CCDC168	HGNC	ENSG00000175820	tier1	-	-	22	0	0.00	0	9	100.00
ROBO2	0	genome.wustl.edu	37	3	77651591	77651591	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	77651591	77651591	G	T	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	missense	c.3085	p.D1029Y	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008	tier1	-	-	40	0	0.00	14	10	41.67
ENSG00000268889	0	genome.wustl.edu	37	19	51906690	51906690	+	RNA	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	19	51906690	51906690	G	T	SNP	ENSG00000268889	ENST00000600765	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTD-2616J11.14	Clone_based_vega_gene	ENSG00000268889	tier1	-	-	35	0	0.00	39	4	9.30
GOLGB1	0	genome.wustl.edu	37	3	121448877	121448877	+	RNA	DEL	A	A	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	121448877	121448877	A	-	DEL	GOLGB1	ENST00000472829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GOLGB1	HGNC	ENSG00000173230	tier1			28	0	0.00	17	2	10.53
GUCY2EP	0	genome.wustl.edu	37	11	76415291	76415291	+	RNA	SNP	G	G	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	11	76415291	76415291	G	A	SNP	GUCY2EP	ENST00000526984	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	GUCY2EP	HGNC	ENSG00000204529	tier1	-	-	42	0	0.00	44	99	69.23
SPEG	0	genome.wustl.edu	37	2	220330645	220330656	+	RNA	DEL	GCGCGCGTGTGC	GCGCGCGTGTGC	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	GCGCGCGTGTGC	GCGCGCGTGTGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	2	220330645	220330656	GCGCGCGTGTGC	-	DEL	SPEG	ENST00000462545	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.015:0.006:0.004:0.001:0.002:0.003:0.005:0.006:0.006:0.000:0.000:0.000	-	-	-	no_errors	SPEG	HGNC	ENSG00000072195	tier1			NA	NA	NA	NA	NA	NA
MGAT4C	0	genome.wustl.edu	37	12	86383241	86383241	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	12	86383241	86383241	G	T	SNP	MGAT4C	ENST00000393205	human	ensembl	74_37	-1	known	missense	c.171	p.F57L	1.000	superfamily_LSM_dom	pfam_Glyco_transf_54,superfamily_LSM_dom	-	no_errors	MGAT4C	HGNC	ENSG00000182050	tier1	-	-	46	0	0.00	44	15	25.42
RP1L1	0	genome.wustl.edu	37	8	10467681	10467686	+	In_Frame_Del	DEL	TCCTTC	TCCTTC	-			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	TCCTTC	TCCTTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	8	10467681	10467686	TCCTTC	-	DEL	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	in_frame_del	c.3927_3922	p.EG1308in_frame_del	0.001:0.000:0.001:0.001:0.000:0.001	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	tier1			NA	NA	NA	NA	NA	NA
SEC62	0	genome.wustl.edu	37	3	169703617	169703617	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	3	169703617	169703617	G	T	SNP	SEC62	ENST00000337002	human	ensembl	74_37	+1	known	missense	c.574	p.V192F	1.000	pfam_Sec62,superfamily_ABC1_TM_dom	pfam_Sec62,superfamily_ABC1_TM_dom	-	no_errors	SEC62	HGNC	ENSG00000008952	tier1	-	-	42	0	0.00	41	4	8.89
HIST1H2AG	0	genome.wustl.edu	37	6	27100857	27100857	+	Missense_Mutation	SNP	G	G	C			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	6	27100857	27100857	G	C	SNP	HIST1H2AG	ENST00000359193	human	ensembl	74_37	+1	known	missense	c.7	p.G3R	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AG	HGNC	ENSG00000196787	tier1	-	-	42	0	0.00	36	4	10.00
PAPD5	0	genome.wustl.edu	37	16	50265726	50265726	+	RNA	SNP	A	A	G			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	16	50265726	50265726	A	G	SNP	PAPD5	ENST00000573002	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PAPD5	HGNC	ENSG00000121274	tier1	-	-	9	0	0.00	1	8	88.89
STXBP3	0	genome.wustl.edu	37	1	109322344	109322345	+	RNA	INS	-	-	ATATTT			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	1	109322344	109322345	-	ATATTT	INS	STXBP3	ENST00000485167	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	STXBP3	HGNC	ENSG00000116266	tier1			NA	NA	NA	NA	NA	NA
PFKFB1	0	genome.wustl.edu	37	X	54978378	54978378	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	X	54978378	54978378	C	T	SNP	PFKFB1	ENST00000375006	human	ensembl	74_37	-1	known	missense	c.806	p.R269H	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB1	HGNC	ENSG00000158571	tier1	-	-	24	0	0.00	15	10	40.00
UBE2I	0	genome.wustl.edu	37	16	1358487	1358488	+	RNA	INS	-	-	AGGGGA			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	16	1358487	1358488	-	AGGGGA	INS	UBE2I	ENST00000339021	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	UBE2I	HGNC	ENSG00000103275	tier1			NA	NA	NA	NA	NA	NA
TBC1D8B	0	genome.wustl.edu	37	X	106117042	106117042	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	X	106117042	106117042	G	T	SNP	TBC1D8B	ENST00000357242	human	ensembl	74_37	+1	known	missense	c.3210	p.R1070S	0.021	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	tier1	-	-	56	0	0.00	20	3	13.04
KRT75	0	genome.wustl.edu	37	12	52818504	52818504	+	Missense_Mutation	SNP	T	T	A			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	12	52818504	52818504	T	A	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1453	p.S485C	0.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454	tier1	-	-	35	0	0.00	49	74	57.36
MIR3677	0	genome.wustl.edu	37	16	2320734	2320734	+	RNA	SNP	A	A	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	16	2320734	2320734	A	T	SNP	MIR3677	ENST00000578964	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR3677	HGNC	ENSG00000266643	tier1	-	-	42	0	0.00	42	7	14.29
ZNF671	0	genome.wustl.edu	37	19	58238816	58238816	+	Silent	SNP	C	C	T			TCGA-QQ-A5VC-01A-31D-A32I-09	TCGA-QQ-A5VC-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d32637db-0977-496a-a037-e5d83bd5b23b	d387978b-317e-41be-bf28-99e243e7d023	19	58238816	58238816	C	T	SNP	ZNF671	ENST00000317398	human	ensembl	74_37	-1	known	silent	c.81	p.P27	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF671	HGNC	ENSG00000083814	tier1	-	-	74	0	0.00	30	26	45.61
