Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CHD6	0	genome.wustl.edu	37	20	40102151	40102151	+	Silent	SNP	G	G	T			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	20	40102151	40102151	G	T	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	silent	c.2475	p.T825	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	tier1	-	-	34	0	0.00	26	4	13.33
GAPVD1	0	genome.wustl.edu	37	9	128025963	128025989	+	Splice_Site	DEL	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT	-			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	9	128025963	128025989	CAGCACTCCATCTGTAGGTATGTCTGT	-	DEL	GAPVD1	ENST00000469528	human	ensembl	74_37	+1	known	splice_site_del	c.NULL	NULL	1.000:1.000:1.000:1.000:1.000:0.999:0.996:0.980:0.970:0.963:0.961:0.959:0.952:0.948:0.947:0.950:0.961:0.966:0.966:0.969:0.974:0.982:0.984:0.985:0.984:0.985:0.993	-	-	-	no_errors	GAPVD1	HGNC	ENSG00000165219	tier1			NA	NA	NA	NA	NA	NA
MUC5B	0	genome.wustl.edu	37	11	1265292	1265292	+	Silent	SNP	G	G	A			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	11	1265292	1265292	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.7191	p.G2397	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	tier1	-	-	17	0	0.00	14	12	46.15
KRTAP4-5	0	genome.wustl.edu	37	17	39305800	39305814	+	In_Frame_Del	DEL	TGGATTCACAGCAAT	TGGATTCACAGCAAT	-			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	TGGATTCACAGCAAT	TGGATTCACAGCAAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	17	39305800	39305814	TGGATTCACAGCAAT	-	DEL	KRTAP4-5	ENST00000343246	human	ensembl	74_37	-1	known	in_frame_del	c.220_206	p.YCCESS69in_frame_delC	0.689:0.524:0.472:0.042:0.004:0.003:0.006:0.126:0.849:0.943:0.982:0.981:0.896:0.000:0.000	NULL	NULL	-	no_errors	KRTAP4-5	HGNC	ENSG00000198271	tier1			NA	NA	NA	NA	NA	NA
APBA2	0	genome.wustl.edu	37	15	29393906	29393906	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	15	29393906	29393906	G	T	SNP	APBA2	ENST00000558259	human	ensembl	74_37	+1	known	missense	c.1443	p.Q481H	0.998	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	tier1	-	-	26	0	0.00	37	4	9.76
PLXNB3	0	genome.wustl.edu	37	X	153033837	153033837	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	X	153033837	153033837	G	T	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	missense	c.1289	p.G430V	0.996	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753	tier1	-	-	17	0	0.00	14	4	22.22
LRRC48	0	genome.wustl.edu	37	17	17896105	17896105	+	Silent	SNP	C	C	T			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	17	17896105	17896105	C	T	SNP	LRRC48	ENST00000313838	human	ensembl	74_37	+1	known	silent	c.471	p.C157	0.739	NULL	NULL	-	no_errors	LRRC48	HGNC	ENSG00000171962	tier1	-	-	46	0	0.00	47	5	9.62
FREM3	0	genome.wustl.edu	37	4	144614357	144614358	+	Splice_Site	INS	-	-	A			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	4	144614357	144614358	-	A	INS	FREM3	ENST00000329798	human	ensembl	74_37	-1	putative	splice_site_ins	c.5186-3_5186-2	e2-2	1.000:0.000	-	-	-	no_errors	FREM3	HGNC	ENSG00000183090	tier1			30	0	0.00	41	4	8.89
RCVRN	0	genome.wustl.edu	37	17	9801316	9801317	+	RNA	INS	-	-	GTGTGTGCGC			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	17	9801316	9801317	-	GTGTGTGCGC	INS	RCVRN	ENST00000570909	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RCVRN	HGNC	ENSG00000109047	tier1			NA	NA	NA	NA	NA	NA
GRIP1	0	genome.wustl.edu	37	12	67072671	67072671	+	Missense_Mutation	SNP	G	G	C			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	12	67072671	67072671	G	C	SNP	GRIP1	ENST00000359742	human	ensembl	74_37	-1	known	missense	c.14	p.S5C	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974	tier1	-	-	41	0	0.00	51	5	8.93
BMF	0	genome.wustl.edu	37	15	40400420	40400421	+	RNA	INS	-	-	ACACACAC			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	15	40400420	40400421	-	ACACACAC	INS	BMF	ENST00000558057	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	BMF	HGNC	ENSG00000104081	tier1			NA	NA	NA	NA	NA	NA
AMIGO3	0	genome.wustl.edu	37	3	49755642	49755643	+	In_Frame_Ins	INS	-	-	CAGCGGCGG			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	3	49755642	49755643	-	CAGCGGCGG	INS	AMIGO3	ENST00000320431	human	ensembl	74_37	-1	known	in_frame_ins	c.1257_1256	p.419in_frame_insCRR	0.999:0.938	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AMIGO3	HGNC	ENSG00000176020	tier1			NA	NA	NA	NA	NA	NA
SLC13A4	0	genome.wustl.edu	37	7	135377097	135377097	+	Silent	SNP	G	G	C			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	7	135377097	135377097	G	C	SNP	SLC13A4	ENST00000354042	human	ensembl	74_37	-1	known	silent	c.1194	p.V398	0.997	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	-	no_errors	SLC13A4	HGNC	ENSG00000164707	tier1	-	-	82	0	0.00	122	19	13.48
BCL11A	0	genome.wustl.edu	37	2	60687039	60687039	+	RNA	SNP	G	G	T			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	2	60687039	60687039	G	T	SNP	BCL11A	ENST00000477659	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BCL11A	HGNC	ENSG00000119866	tier1	-	-	33	0	0.00	43	4	8.51
PHF23	0	genome.wustl.edu	37	17	7140765	7140765	+	Missense_Mutation	SNP	T	T	C			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	17	7140765	7140765	T	C	SNP	PHF23	ENST00000320316	human	ensembl	74_37	-1	known	missense	c.98	p.D33G	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF23	HGNC	ENSG00000040633	tier1	-	-	78	0	0.00	85	8	8.60
AMZ1	0	genome.wustl.edu	37	7	2741852	2741906	+	RNA	DEL	TGTGTGCTACTCTGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTC	TGTGTGCTACTCTGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTC	-			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	TGTGTGCTACTCTGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTC	TGTGTGCTACTCTGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	7	2741852	2741906	TGTGTGCTACTCTGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTC	-	DEL	AMZ1	ENST00000485540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.001:0.002:0.002:0.003:0.004:0.003:0.001:0.000:0.000:0.004:0.003:0.003:0.002:0.002:0.002:0.003:0.003:0.001:0.005:0.071:0.077:0.080:0.076:0.071:0.067:0.056:0.014:0.004:0.001:0.002:0.002:0.000:0.001:0.002:0.003:0.004:0.005:0.002:0.002:0.002:0.002:0.002:0.002:0.003:0.000:0.001:0.001:0.000:0.000:0.000:0.001:0.000:0.000	-	-	-	no_errors	AMZ1	HGNC	ENSG00000174945	tier1			NA	NA	NA	NA	NA	NA
ARFGEF2	0	genome.wustl.edu	37	20	47626792	47626792	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	20	47626792	47626792	C	T	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.3608	p.A1203V	1.000	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	tier1	-	-	30	0	0.00	26	4	13.33
COL4A3	0	genome.wustl.edu	37	2	228104874	228104874	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	2	228104874	228104874	C	T	SNP	COL4A3	ENST00000396578	human	ensembl	74_37	+1	known	missense	c.160	p.P54S	0.853	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	tier1	-	-	35	0	0.00	43	4	8.51
ZNF28	0	genome.wustl.edu	37	19	53303182	53303182	+	Missense_Mutation	SNP	T	T	C			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	19	53303182	53303182	T	C	SNP	ZNF28	ENST00000457749	human	ensembl	74_37	-1	known	missense	c.1916	p.E639G	0.006	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF28	HGNC	ENSG00000198538	tier1	rs142391659	-	48	0	0.00	57	5	8.06
HDGFRP2	0	genome.wustl.edu	37	19	4499633	4499647	+	In_Frame_Del	DEL	AGCTGGCCGGGGAGG	AGCTGGCCGGGGAGG	-			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	AGCTGGCCGGGGAGG	AGCTGGCCGGGGAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	19	4499633	4499647	AGCTGGCCGGGGAGG	-	DEL	HDGFRP2	ENST00000301284	human	ensembl	74_37	+1	known	in_frame_del	c.1721_1735	p.EELAG578in_frame_del	0.074:0.085:0.097:0.108:0.119:0.130:0.141:0.151:0.162:0.172:0.183:0.193:0.203:0.213:0.223	NULL	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	HDGFRP2	Uniprot_gn	ENSG00000167674	tier1			NA	NA	NA	NA	NA	NA
POTEE	0	genome.wustl.edu	37	2	132022031	132022031	+	Silent	SNP	C	C	T			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	2	132022031	132022031	C	T	SNP	POTEE	ENST00000356920	human	ensembl	74_37	+1	known	silent	c.3003	p.G1001	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEE	HGNC	ENSG00000188219	tier1	-	-	19	0	0.00	11	5	29.41
MLXIP	0	genome.wustl.edu	37	12	122614518	122614518	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	12	122614518	122614518	G	T	SNP	MLXIP	ENST00000319080	human	ensembl	74_37	+1	known	missense	c.769	p.G257W	0.007	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIP	HGNC	ENSG00000175727	tier1	-	-	36	0	0.00	42	4	8.70
VRTN	0	genome.wustl.edu	37	14	74824312	74824312	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	14	74824312	74824312	C	T	SNP	VRTN	ENST00000256362	human	ensembl	74_37	+1	known	missense	c.826	p.R276C	0.846	pfam_Transposase_8	pfam_Transposase_8	-	no_errors	VRTN	HGNC	ENSG00000133980	tier1	-	-	43	0	0.00	59	6	9.23
ARHGEF11	0	genome.wustl.edu	37	1	156904654	156904654	+	RNA	DEL	A	A	-			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	1	156904654	156904654	A	-	DEL	ARHGEF11	ENST00000487682	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.863	-	-	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	tier1			21	0	0.00	11	3	21.43
SP100	0	genome.wustl.edu	37	2	231334496	231334496	+	Frame_Shift_Del	DEL	A	A	-			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	2	231334496	231334496	A	-	DEL	SP100	ENST00000341950	human	ensembl	74_37	+1	known	frame_shift_del	c.1350	p.K453fs	0.007	NULL	pfam_Sp100	-	no_errors	SP100	HGNC	ENSG00000067066	tier1			13	0	0.00	22	4	15.38
PARP1	0	genome.wustl.edu	37	1	226549885	226549886	+	RNA	INS	-	-	T			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	1	226549885	226549886	-	T	INS	PARP1	ENST00000491816	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.004	-	-	-	no_errors	PARP1	HGNC	ENSG00000143799	tier1			31	0	0.00	31	3	8.82
AMBRA1	0	genome.wustl.edu	37	11	46568608	46568609	+	RNA	INS	-	-	A			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	11	46568608	46568609	-	A	INS	AMBRA1	ENST00000524783	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.032:0.881	-	-	-	no_errors	AMBRA1	HGNC	ENSG00000110497	tier1			22	0	0.00	26	4	13.33
ENSG00000269175	0	genome.wustl.edu	37	1	101456193	101456193	+	Frame_Shift_Del	DEL	A	A	-			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	1	101456193	101456193	A	-	DEL	ENSG00000269175	ENST00000593496	human	ensembl	74_37	+1	known	frame_shift_del	c.187	p.R66fs	0.002	NULL	NULL	-	no_errors	AC093157.1	Clone_based_ensembl_gene	ENSG00000269175	tier1			23	0	0.00	24	5	17.24
OR4L1	0	genome.wustl.edu	37	14	20528449	20528467	+	Frame_Shift_Del	DEL	CATAGATTTGCTCACTGAC	CATAGATTTGCTCACTGAC	-			TCGA-QQ-A8VD-01A-42D-A38Z-09	TCGA-QQ-A8VD-10A-01D-A38Z-09	CATAGATTTGCTCACTGAC	CATAGATTTGCTCACTGAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	076d23f5-8017-4f0b-b9a1-462386d9e1ed	34a49c5e-6a61-43d0-82b6-2b597c3cbab8	14	20528449	20528467	CATAGATTTGCTCACTGAC	-	DEL	OR4L1	ENST00000315683	human	ensembl	74_37	+1	known	frame_shift_del	c.246_264	p.I83fs	0.310:0.063:0.001:0.001:0.010:0.035:0.041:0.029:0.169:0.162:0.267:0.267:0.008:0.000:0.000:0.000:0.000:0.001:0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4L1	HGNC	ENSG00000176246	tier1			NA	NA	NA	NA	NA	NA
