Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NR3C2	0	genome.wustl.edu	37	4	149356399	149356399	+	Silent	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	4	149356399	149356399	C	T	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	silent	c.1614	p.S538	0.002	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623	tier1	rs146153919	-	87	0	0.00	84	30	26.32
NKD2	0	genome.wustl.edu	37	5	1038447	1038449	+	In_Frame_Del	DEL	CAC	CAC	-			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	CAC	CAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	5	1038447	1038449	CAC	-	DEL	NKD2	ENST00000296849	human	ensembl	74_37	+1	known	in_frame_del	c.1315_1317	p.H442in_frame_del	1.000:1.000:1.000	NULL	pfscan_EF_hand_dom	-	no_errors	NKD2	HGNC	ENSG00000145506	tier1			25	0	0.00	35	5	12.50
SYN2	0	genome.wustl.edu	37	3	12203603	12203603	+	RNA	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	3	12203603	12203603	C	T	SNP	SYN2	ENST00000425297	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SYN2	HGNC	ENSG00000157152	tier1	-	-	50	0	0.00	55	9	14.06
GMEB1	0	genome.wustl.edu	37	1	29041385	29041386	+	RNA	INS	-	-	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	1	29041385	29041386	-	A	INS	GMEB1	ENST00000480454	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.437:0.252	-	-	-	no_errors	GMEB1	HGNC	ENSG00000162419	tier1			58	0	0.00	58	7	10.77
ENSG00000225411	0	genome.wustl.edu	37	9	68400476	68400476	+	RNA	SNP	G	G	C			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	9	68400476	68400476	G	C	SNP	ENSG00000225411	ENST00000417843	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	RP11-764K9.1	Clone_based_vega_gene	ENSG00000225411	tier1	-	-	12	0	0.00	4	4	50.00
ANKLE1	0	genome.wustl.edu	37	19	17396619	17396619	+	Missense_Mutation	SNP	G	G	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	19	17396619	17396619	G	A	SNP	ANKLE1	ENST00000394458	human	ensembl	74_37	+1	known	missense	c.1666	p.E556K	1.000	NULL	pfam_Ankyrin_rpt,pfam_LEM_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_LEM/LEM-like_dom,superfamily_Lactate_DH/Glyco_Ohase_4_C,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_LEM_dom	-	no_errors	ANKLE1	HGNC	ENSG00000160117	tier1	-	-	52	0	0.00	35	11	23.91
CUL4B	0	genome.wustl.edu	37	X	119694212	119694212	+	Missense_Mutation	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	X	119694212	119694212	G	T	SNP	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	missense	c.336	p.H112Q	1.000	NULL	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	tier1	-	-	37	0	0.00	35	4	10.26
CCDC41	0	genome.wustl.edu	37	12	94772610	94772610	+	Missense_Mutation	SNP	A	A	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	12	94772610	94772610	A	T	SNP	CCDC41	ENST00000339839	human	ensembl	74_37	-1	known	missense	c.758	p.V253E	1.000	NULL	NULL	-	no_errors	CCDC41	HGNC	ENSG00000173588	tier1	-	-	65	0	0.00	48	11	18.64
FAM174B	0	genome.wustl.edu	37	15	93198679	93198684	+	In_Frame_Del	DEL	TGGAGC	TGGAGC	-			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	TGGAGC	TGGAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	15	93198679	93198684	TGGAGC	-	DEL	FAM174B	ENST00000327355	human	ensembl	74_37	-1	known	in_frame_del	c.211_206	p.SS69in_frame_del	0.997:0.996:0.995:0.994:0.994:0.995	pfam_DUF1180	pfam_DUF1180	-	no_errors	FAM174B	HGNC	ENSG00000185442	tier1			NA	NA	NA	NA	NA	NA
C6	0	genome.wustl.edu	37	5	41172432	41172432	+	Missense_Mutation	SNP	C	C	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	5	41172432	41172432	C	A	SNP	C6	ENST00000263413	human	ensembl	74_37	-1	known	missense	c.1186	p.A396S	0.000	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537	tier1	-	-	52	0	0.00	89	24	21.24
CHST8	0	genome.wustl.edu	37	19	34263521	34263521	+	Missense_Mutation	SNP	C	C	G			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	19	34263521	34263521	C	G	SNP	CHST8	ENST00000262622	human	ensembl	74_37	+1	known	missense	c.828	p.N276K	0.956	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST8	HGNC	ENSG00000124302	tier1	-	-	77	0	0.00	53	22	29.33
CPXM2	0	genome.wustl.edu	37	10	125506534	125506534	+	Splice_Site	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	10	125506534	125506534	C	T	SNP	CPXM2	ENST00000241305	human	ensembl	74_37	-1	known	splice_site	c.2018-1	e14-1	1.000	-	-	-	no_errors	CPXM2	HGNC	ENSG00000121898	tier1	-	-	39	0	0.00	15	3	16.67
MED15	0	genome.wustl.edu	37	22	20920814	20920816	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	22	20920814	20920816	CAG	-	DEL	MED15	ENST00000263205	human	ensembl	74_37	+1	known	in_frame_del	c.751_753	p.Q254in_frame_del	0.998:0.999:1.000	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_errors	MED15	HGNC	ENSG00000099917	tier1			49	0	0.00	19	3	13.64
PRKD1	0	genome.wustl.edu	37	14	30046656	30046656	+	Missense_Mutation	SNP	G	G	C			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	14	30046656	30046656	G	C	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	missense	c.2527	p.Q843E	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304	tier1	-	-	30	0	0.00	55	5	8.33
HOMEZ	0	genome.wustl.edu	37	14	23744827	23744829	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	14	23744827	23744829	TCC	-	DEL	HOMEZ	ENST00000431326	human	ensembl	74_37	-1	known	in_frame_del	c.1616_1614	p.E539in_frame_del	0.112:0.064:0.005	NULL	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOMEZ	HGNC	ENSG00000215271	tier1			15	0	0.00	22	12	35.29
ANAPC15	0	genome.wustl.edu	37	11	71818438	71818438	+	Missense_Mutation	SNP	T	T	C			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	11	71818438	71818438	T	C	SNP	ANAPC15	ENST00000543050	human	ensembl	74_37	-1	putative	missense	c.532	p.T178A	0.059	NULL	NULL	-	no_errors	ANAPC15	HGNC	ENSG00000110200	tier1	-	-	57	0	0.00	46	12	20.69
C2CD4D	0	genome.wustl.edu	37	1	151810481	151810481	+	Missense_Mutation	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	1	151810481	151810481	G	T	SNP	C2CD4D	ENST00000454109	human	ensembl	74_37	-1	known	missense	c.985	p.L329I	0.988	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	C2CD4D	HGNC	ENSG00000225556	tier1	-	-	72	0	0.00	40	4	9.09
TUBA4B	0	genome.wustl.edu	37	2	220118077	220118077	+	RNA	DEL	G	G	-			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	2	220118077	220118077	G	-	DEL	TUBA4B	ENST00000473885	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TUBA4B	HGNC	ENSG00000243910	tier1			21	0	0.00	24	5	17.24
NFASC	0	genome.wustl.edu	37	1	204988603	204988604	+	RNA	INS	-	-	CATTCATTCATT			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	1	204988603	204988604	-	CATTCATTCATT	INS	NFASC	ENST00000495396	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007:0.075	-	-	-	no_errors	NFASC	HGNC	ENSG00000163531	tier1			NA	NA	NA	NA	NA	NA
ENSG00000212952	0	genome.wustl.edu	37	9	44402023	44402023	+	Missense_Mutation	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	9	44402023	44402023	C	T	SNP	ENSG00000212952	ENST00000540551	human	ensembl	74_37	-1	known	missense	c.233	p.R78H	0.001	NULL	NULL	-	no_errors	BX088651.1	Clone_based_ensembl_gene	ENSG00000212952	tier1	-	-	95	0	0.00	65	19	22.62
COPS4	0	genome.wustl.edu	37	4	83978560	83978560	+	Silent	SNP	A	A	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	4	83978560	83978560	A	T	SNP	COPS4	ENST00000264389	human	ensembl	74_37	+1	known	silent	c.714	p.A238	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS4	HGNC	ENSG00000138663	tier1	-	-	52	0	0.00	51	6	10.53
FLRT2	0	genome.wustl.edu	37	14	86088593	86088593	+	Silent	SNP	T	T	C			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	14	86088593	86088593	T	C	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	silent	c.735	p.P245	0.002	NULL	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	tier1	-	-	25	0	0.00	14	7	33.33
TBPL1	0	genome.wustl.edu	37	6	134301277	134301277	+	Missense_Mutation	SNP	G	G	C			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	6	134301277	134301277	G	C	SNP	TBPL1	ENST00000237264	human	ensembl	74_37	+1	known	missense	c.14	p.S5T	1.000	NULL	pfam_TBP,prints_TBP	-	no_errors	TBPL1	HGNC	ENSG00000028839	tier1	-	-	100	0	0.00	89	19	17.59
NBPF10	0	genome.wustl.edu	37	1	145295521	145295521	+	Missense_Mutation	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	1	145295521	145295521	C	T	SNP	NBPF10	ENST00000342960	human	ensembl	74_37	+1	known	missense	c.274	p.L92F	0.005	NULL	pfam_NBPF_dom	-	no_errors	NBPF10	HGNC	ENSG00000163386	tier1	rs75821470	-	28	0	0.00	7	4	36.36
IL21R	0	genome.wustl.edu	37	16	27448886	27448886	+	Missense_Mutation	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	16	27448886	27448886	C	T	SNP	IL21R	ENST00000337929	human	ensembl	74_37	+1	known	missense	c.230	p.A77V	0.000	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL21R	HGNC	ENSG00000103522	tier1	-	-	56	0	0.00	31	13	29.55
RIPK1	0	genome.wustl.edu	37	6	3105965	3105965	+	Missense_Mutation	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	6	3105965	3105965	C	T	SNP	RIPK1	ENST00000259808	human	ensembl	74_37	+1	known	missense	c.1256	p.P419L	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Death_domain,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK1	HGNC	ENSG00000137275	tier1	-	-	29	0	0.00	9	13	59.09
TJP3	0	genome.wustl.edu	37	19	3731993	3731993	+	Missense_Mutation	SNP	C	C	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	19	3731993	3731993	C	A	SNP	TJP3	ENST00000262968	human	ensembl	74_37	+1	known	missense	c.731	p.A244D	0.998	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_SH3_2,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289	tier1	-	-	45	0	0.00	28	4	12.50
MYO7A	0	genome.wustl.edu	37	11	76918448	76918448	+	Splice_Site	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	11	76918448	76918448	G	T	SNP	MYO7A	ENST00000409709	human	ensembl	74_37	+1	known	splice_site	c.5856+1	e41+1	1.000	-	-	-	no_errors	MYO7A	HGNC	ENSG00000137474	tier1	-	-	41	0	0.00	13	3	18.75
MAP1A	0	genome.wustl.edu	37	15	43804395	43804395	+	Silent	SNP	C	C	G			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	15	43804395	43804395	C	G	SNP	MAP1A	ENST00000382031	human	ensembl	74_37	+1	novel	silent	c.246	p.L82	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	tier1	-	-	69	0	0.00	63	33	34.38
SOX1	0	genome.wustl.edu	37	13	112722436	112722441	+	In_Frame_Del	DEL	TGGGCG	TGGGCG	-			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	TGGGCG	TGGGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	13	112722436	112722441	TGGGCG	-	DEL	SOX1	ENST00000330949	human	ensembl	74_37	+1	known	in_frame_del	c.464_469	p.VG159in_frame_del	0.985:0.996:1.000:1.000:0.975:0.961	pfam_TF_SOX	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX1	HGNC	ENSG00000182968	tier1			NA	NA	NA	NA	NA	NA
ANKRD18B	0	genome.wustl.edu	37	9	33528762	33528762	+	Nonsense_Mutation	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	9	33528762	33528762	C	T	SNP	ANKRD18B	ENST00000290943	human	ensembl	74_37	+1	known	nonsense	c.244	p.Q82*	0.296	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD18B	HGNC	ENSG00000230453	tier1	-	-	88	0	0.00	83	39	31.97
LOXHD1	0	genome.wustl.edu	37	18	44181423	44181423	+	Silent	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	18	44181423	44181423	C	T	SNP	LOXHD1	ENST00000536736	human	ensembl	74_37	-1	known	silent	c.891	p.T297	0.001	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	-	no_errors	LOXHD1	HGNC	ENSG00000167210	tier1	-	-	45	0	0.00	37	4	9.76
PER1	0	genome.wustl.edu	37	17	8048212	8048212	+	Missense_Mutation	SNP	T	T	C			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	17	8048212	8048212	T	C	SNP	PER1	ENST00000317276	human	ensembl	74_37	-1	known	missense	c.2318	p.Y773C	1.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	tier1	-	-	78	0	0.00	68	17	20.00
WBSCR17	0	genome.wustl.edu	37	7	71036308	71036308	+	Missense_Mutation	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	7	71036308	71036308	G	T	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.1001	p.R334M	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	tier1	-	-	96	0	0.00	87	18	17.14
TNFRSF10C	0	genome.wustl.edu	37	8	22960554	22960554	+	Missense_Mutation	SNP	T	T	C			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	8	22960554	22960554	T	C	SNP	TNFRSF10C	ENST00000397703	human	ensembl	74_37	+1	putative	missense	c.40	p.S14P	0.001	NULL	NULL	-	no_errors	TNFRSF10C	HGNC	ENSG00000173535	tier1	-	-	92	0	0.00	68	35	33.98
MCL1	0	genome.wustl.edu	37	1	150549410	150549410	+	RNA	SNP	C	C	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	1	150549410	150549410	C	A	SNP	MCL1	ENST00000464132	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MCL1	HGNC	ENSG00000143384	tier1	-	-	81	0	0.00	25	23	47.92
LMOD3	0	genome.wustl.edu	37	3	69171266	69171266	+	Missense_Mutation	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	3	69171266	69171266	G	T	SNP	LMOD3	ENST00000420581	human	ensembl	74_37	-1	known	missense	c.272	p.P91H	1.000	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380	tier1	-	-	66	0	0.00	34	4	10.53
GPR160	0	genome.wustl.edu	37	3	169780490	169780490	+	RNA	SNP	G	G	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	3	169780490	169780490	G	A	SNP	GPR160	ENST00000476668	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.102	-	-	-	no_errors	GPR160	HGNC	ENSG00000173890	tier1	-	-	19	0	0.00	11	3	21.43
HTR2A	0	genome.wustl.edu	37	13	47409498	47409498	+	Missense_Mutation	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	13	47409498	47409498	C	T	SNP	HTR2A	ENST00000378688	human	ensembl	74_37	-1	known	missense	c.890	p.R297Q	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2A_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2A	HGNC	ENSG00000102468	tier1	-	-	26	0	0.00	39	14	26.42
COL18A1	0	genome.wustl.edu	37	21	46924426	46924434	+	In_Frame_Del	DEL	GGCCCCCCA	GGCCCCCCA	-			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	GGCCCCCCA	GGCCCCCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	21	46924426	46924434	GGCCCCCCA	-	DEL	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	in_frame_del	c.4069_4077	p.GPP1360in_frame_del	0.307:0.391:0.336:0.964:0.952:0.917:0.918:0.919:0.837	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	tier1			NA	NA	NA	NA	NA	NA
KLHL28	0	genome.wustl.edu	37	14	45414684	45414684	+	Missense_Mutation	SNP	G	G	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	14	45414684	45414684	G	A	SNP	KLHL28	ENST00000396128	human	ensembl	74_37	-1	known	missense	c.448	p.R150C	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454	tier1	-	-	63	0	0.00	44	23	34.33
SLC4A4	0	genome.wustl.edu	37	4	72121054	72121054	+	Missense_Mutation	SNP	A	A	G			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	4	72121054	72121054	A	G	SNP	SLC4A4	ENST00000425175	human	ensembl	74_37	+1	known	missense	c.191	p.Y64C	1.000	NULL	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	tier1	-	-	50	0	0.00	79	18	18.56
TMEM191C	0	genome.wustl.edu	37	22	21822385	21822390	+	RNA	DEL	TGGGGT	TGGGGT	-			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	TGGGGT	TGGGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	22	21822385	21822390	TGGGGT	-	DEL	TMEM191C	ENST00000449424	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.005:0.016:0.005:0.000:0.000	-	-	-	no_errors	TMEM191C	HGNC	ENSG00000206140	tier1			NA	NA	NA	NA	NA	NA
SOGA2	0	genome.wustl.edu	37	18	8825190	8825190	+	Nonsense_Mutation	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	18	8825190	8825190	G	T	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	nonsense	c.3682	p.G1228*	0.992	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502	tier1	-	-	69	0	0.00	123	27	18.00
PIK3C2G	0	genome.wustl.edu	37	12	18499601	18499601	+	Missense_Mutation	SNP	C	C	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	12	18499601	18499601	C	A	SNP	PIK3C2G	ENST00000538779	human	ensembl	74_37	+1	known	missense	c.1456	p.L486I	0.998	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	tier1	-	-	34	0	0.00	65	8	10.96
SDK1	0	genome.wustl.edu	37	7	4153058	4153058	+	Missense_Mutation	SNP	G	G	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	7	4153058	4153058	G	A	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.3572	p.R1191Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555	tier1	-	-	20	0	0.00	12	6	33.33
NCAN	0	genome.wustl.edu	37	19	19349080	19349080	+	Missense_Mutation	SNP	G	G	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	19	19349080	19349080	G	A	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.3269	p.R1090H	0.428	superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287	tier1	-	-	98	0	0.00	75	13	14.77
THOC5	0	genome.wustl.edu	37	22	29927861	29927861	+	Missense_Mutation	SNP	T	T	C			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	22	29927861	29927861	T	C	SNP	THOC5	ENST00000397871	human	ensembl	74_37	-1	known	missense	c.806	p.Y269C	1.000	pfam_THO_Thoc5	pfam_THO_Thoc5	-	no_errors	THOC5	HGNC	ENSG00000100296	tier1	-	-	48	0	0.00	73	10	12.05
BTBD11	0	genome.wustl.edu	37	12	107974745	107974745	+	Missense_Mutation	SNP	G	G	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	12	107974745	107974745	G	A	SNP	BTBD11	ENST00000357167	human	ensembl	74_37	+1	known	missense	c.62	p.G21E	0.998	NULL	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136	tier1	-	-	56	0	0.00	58	20	25.64
ZNF443	0	genome.wustl.edu	37	19	12542630	12542630	+	Missense_Mutation	SNP	T	T	C			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	19	12542630	12542630	T	C	SNP	ZNF443	ENST00000301547	human	ensembl	74_37	-1	known	missense	c.356	p.N119S	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF443	HGNC	ENSG00000180855	tier1	-	-	77	0	0.00	30	17	36.17
NLGN2	0	genome.wustl.edu	37	17	7320563	7320563	+	Silent	SNP	C	C	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	17	7320563	7320563	C	A	SNP	NLGN2	ENST00000302926	human	ensembl	74_37	+1	known	silent	c.1953	p.P651	0.121	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992	tier1	-	-	33	0	0.00	23	4	14.81
CBS	0	genome.wustl.edu	37	21	44483184	44483184	+	Missense_Mutation	SNP	A	A	G			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	21	44483184	44483184	A	G	SNP	CBS	ENST00000398168	human	ensembl	74_37	-1	known	missense	c.833	p.I278T	0.966	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Cysta_beta_synth	pfam_Trp_syn_b_sub_like_PLP_eny_SF,pfam_CBS_dom,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,smart_CBS_dom,tigrfam_Cysta_beta_synth	-	no_errors	CBS	HGNC	ENSG00000160200	tier1	rs5742905	-	41	0	0.00	25	5	16.67
SEMA6D	0	genome.wustl.edu	37	15	48055236	48055236	+	Nonsense_Mutation	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	15	48055236	48055236	G	T	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	nonsense	c.682	p.E228*	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872	tier1	-	-	29	0	0.00	39	4	9.30
ZNF638	0	genome.wustl.edu	37	2	71651102	71651102	+	Silent	SNP	A	A	C			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	2	71651102	71651102	A	C	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	silent	c.4458	p.I1486	0.997	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292	tier1	-	-	28	0	0.00	30	11	26.83
CBLC	0	genome.wustl.edu	37	19	45285744	45285744	+	Missense_Mutation	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	19	45285744	45285744	G	T	SNP	CBLC	ENST00000270279	human	ensembl	74_37	+1	known	missense	c.775	p.G259C	0.999	pfam_Adaptor_Cbl_SH2-like	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273	tier1	-	-	28	0	0.00	12	3	20.00
FCRL1	0	genome.wustl.edu	37	1	157776895	157776895	+	Missense_Mutation	SNP	C	C	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	1	157776895	157776895	C	A	SNP	FCRL1	ENST00000368176	human	ensembl	74_37	-1	known	missense	c.49	p.A17S	0.000	pfscan_Ig-like_dom	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL1	HGNC	ENSG00000163534	tier1	-	-	48	0	0.00	37	4	9.76
GNAT1	0	genome.wustl.edu	37	3	50230725	50230725	+	Silent	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	3	50230725	50230725	G	T	SNP	GNAT1	ENST00000232461	human	ensembl	74_37	+1	known	silent	c.177	p.L59	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT1	HGNC	ENSG00000114349	tier1	-	-	43	0	0.00	36	4	10.00
METTL9	0	genome.wustl.edu	37	16	21629371	21629371	+	Missense_Mutation	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	16	21629371	21629371	G	T	SNP	METTL9	ENST00000358154	human	ensembl	74_37	+1	known	missense	c.542	p.W181L	1.000	pfam_DREV_MeTrfase,pfam_Methyltransf_12,pfam_Methyltransf_11	pfam_DREV_MeTrfase,pfam_Methyltransf_12,pfam_Methyltransf_11	-	no_errors	METTL9	HGNC	ENSG00000197006	tier1	-	-	119	0	0.00	122	18	12.86
SLC5A3	0	genome.wustl.edu	37	21	35469189	35469189	+	Silent	SNP	A	A	G			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	21	35469189	35469189	A	G	SNP	SLC5A3	ENST00000381151	human	ensembl	74_37	+1	known	silent	c.1692	p.P564	0.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A3	HGNC	ENSG00000198743	tier1	-	-	34	0	0.00	25	9	26.47
ZNF776	0	genome.wustl.edu	37	19	58264667	58264667	+	Missense_Mutation	SNP	T	T	C			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	19	58264667	58264667	T	C	SNP	ZNF776	ENST00000317178	human	ensembl	74_37	+1	known	missense	c.169	p.Y57H	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF776	HGNC	ENSG00000152443	tier1	-	-	94	0	0.00	86	19	18.10
GPR37L1	0	genome.wustl.edu	37	1	202092707	202092722	+	Splice_Site	DEL	GTGCCCTTCATGGAGG	GTGCCCTTCATGGAGG	-			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	GTGCCCTTCATGGAGG	GTGCCCTTCATGGAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	1	202092707	202092722	GTGCCCTTCATGGAGG	-	DEL	GPR37L1	ENST00000367282	human	ensembl	74_37	+1	known	splice_site_del	c.630+16_630+1	e2-1	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.998:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors	GPR37L1	HGNC	ENSG00000170075	tier1			NA	NA	NA	NA	NA	NA
COL28A1	0	genome.wustl.edu	37	7	7571323	7571323	+	Missense_Mutation	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	7	7571323	7571323	C	T	SNP	COL28A1	ENST00000399429	human	ensembl	74_37	-1	known	missense	c.337	p.D113N	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018	tier1	-	-	47	0	0.00	41	10	19.61
SRRM4	0	genome.wustl.edu	37	12	119554776	119554778	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	12	119554776	119554778	AAG	-	DEL	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	in_frame_del	c.400_402	p.K137in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767	tier1			45	0	0.00	59	8	11.94
SOX2-OT	0	genome.wustl.edu	37	3	181417762	181417763	+	RNA	INS	-	-	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	3	181417762	181417763	-	T	INS	SOX2-OT	ENST00000597347	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SOX2-OT	HGNC	ENSG00000242808	tier1			11	0	0.00	11	2	15.38
PROB1	0	genome.wustl.edu	37	5	138729105	138729108	+	Frame_Shift_Del	DEL	TGCC	TGCC	-			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	TGCC	TGCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	5	138729105	138729108	TGCC	-	DEL	PROB1	ENST00000434752	human	ensembl	74_37	-1	known	frame_shift_del	c.1666_1663	p.G555fs	0.288:0.260:0.478:0.513	NULL	NULL	-	no_errors	PROB1	HGNC	ENSG00000228672	tier1			63	0	0.00	41	12	22.64
KIRREL	0	genome.wustl.edu	37	1	158064643	158064643	+	Silent	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	1	158064643	158064643	C	T	SNP	KIRREL	ENST00000368173	human	ensembl	74_37	+1	known	silent	c.2055	p.G685	0.932	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL	HGNC	ENSG00000183853	tier1	-	-	81	0	0.00	43	4	8.51
FLJ40448	0	genome.wustl.edu	37	16	88809563	88809563	+	RNA	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	16	88809563	88809563	G	T	SNP	FLJ40448	ENST00000333666	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP5-1142A6.8	Clone_based_vega_gene	ENSG00000182376	tier1	-	-	72	0	0.00	26	4	13.33
DCDC1	0	genome.wustl.edu	37	11	31115595	31115595	+	Splice_Site	SNP	A	A	G			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	11	31115595	31115595	A	G	SNP	DCDC1	ENST00000342355	human	ensembl	74_37	-1	known	splice_site	c.813+2	e5+2	1.000	-	-	-	no_errors	DCDC1	HGNC	ENSG00000170959	tier1	-	-	30	0	0.00	21	16	42.11
CACNG8	0	genome.wustl.edu	37	19	54466532	54466532	+	Missense_Mutation	SNP	T	T	G			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	19	54466532	54466532	T	G	SNP	CACNG8	ENST00000270458	human	ensembl	74_37	+1	known	missense	c.136	p.Y46D	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g8su,prints_Claudin	-	no_errors	CACNG8	HGNC	ENSG00000142408	tier1	-	-	30	0	0.00	19	12	38.71
ENSG00000221591	0	genome.wustl.edu	37	1	57432008	57432008	+	RNA	SNP	C	C	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	1	57432008	57432008	C	A	SNP	ENSG00000221591	ENST00000408664	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.012	-	-	-	no_errors	AL161740.1	Clone_based_ensembl_gene	ENSG00000221591	tier1	-	-	31	0	0.00	41	9	18.00
DGKK	0	genome.wustl.edu	37	X	50213484	50213484	+	RNA	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	X	50213484	50213484	G	T	SNP	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	tier1	-	-	78	0	0.00	66	44	40.00
AMY2B	0	genome.wustl.edu	37	1	104117892	104117892	+	Missense_Mutation	SNP	T	T	G			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	1	104117892	104117892	T	G	SNP	AMY2B	ENST00000361355	human	ensembl	74_37	+1	known	missense	c.926	p.V309G	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,prints_Alpha_amylase	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038	tier1	-	-	187	0	0.00	107	50	31.85
ZNF732	0	genome.wustl.edu	37	4	265156	265156	+	Missense_Mutation	SNP	G	G	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	4	265156	265156	G	A	SNP	ZNF732	ENST00000419098	human	ensembl	74_37	-1	known	missense	c.1490	p.T497I	0.996	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF732	HGNC	ENSG00000186777	tier1	-	-	56	0	0.00	42	18	30.00
IGHV1OR21-1	0	genome.wustl.edu	37	21	10862639	10862639	+	Silent	SNP	G	G	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	21	10862639	10862639	G	A	SNP	IGHV1OR21-1	ENST00000559480	human	ensembl	74_37	+1	known	silent	c.18	p.R6	0.000	NULL	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGHV1OR21-1	HGNC	ENSG00000169861	tier1	-	-	190	0	0.00	98	13	11.71
FAM83C	0	genome.wustl.edu	37	20	33879944	33879944	+	Missense_Mutation	SNP	C	C	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	20	33879944	33879944	C	T	SNP	FAM83C	ENST00000374408	human	ensembl	74_37	-1	known	missense	c.164	p.R55Q	0.826	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83C	HGNC	ENSG00000125998	tier1	-	-	41	0	0.00	34	4	10.53
LMAN2L	0	genome.wustl.edu	37	2	97373089	97373089	+	Silent	SNP	G	G	T			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	2	97373089	97373089	G	T	SNP	LMAN2L	ENST00000377079	human	ensembl	74_37	-1	known	silent	c.984	p.I328	0.991	NULL	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	-	no_errors	LMAN2L	HGNC	ENSG00000114988	tier1	-	-	27	0	0.00	28	4	12.50
MUC12	0	genome.wustl.edu	37	7	100644059	100644059	+	Missense_Mutation	SNP	G	G	C			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	7	100644059	100644059	G	C	SNP	MUC12	ENST00000536621	human	ensembl	74_37	+1	known	missense	c.10215	p.E3405D	0.134	NULL	pfam_SEA_dom	-	no_errors	MUC12	HGNC	ENSG00000205277	tier1	rs144581449	-	9	0	0.00	7	7	50.00
CHAF1A	0	genome.wustl.edu	37	19	4428833	4428833	+	Missense_Mutation	SNP	C	C	A			TCGA-RN-AAAQ-01A-21D-A38Z-09	TCGA-RN-AAAQ-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af916933-1e8c-423a-9d74-39fcb5a59e68	cb44b945-75a0-4ace-8e93-7593624f09eb	19	4428833	4428833	C	A	SNP	CHAF1A	ENST00000301280	human	ensembl	74_37	+1	known	missense	c.1550	p.P517H	1.000	NULL	pfam_CAF1A	-	no_errors	CHAF1A	HGNC	ENSG00000167670	tier1	-	-	13	0	0.00	10	4	28.57
