Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ENSG00000268889	0	genome.wustl.edu	37	19	51906659	51906659	+	RNA	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	19	51906659	51906659	G	A	SNP	ENSG00000268889	ENST00000600765	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTD-2616J11.14	Clone_based_vega_gene	ENSG00000268889	tier1	-	-	23	0	0.00	32	6	15.79
CBWD1	0	genome.wustl.edu	37	9	122049	122049	+	Silent	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	9	122049	122049	G	A	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	silent	c.993	p.V331	1.000	pfam_Cbl_biosynth_CobW-like_C,superfamily_Cbl_biosynth_CobW-like_C	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD1	HGNC	ENSG00000172785	tier1	-	-	181	0	0.00	5	108	95.58
ARHGAP35	0	genome.wustl.edu	37	19	47424830	47424830	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	19	47424830	47424830	G	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	missense	c.2898	p.E966D	0.984	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	tier1	-	-	39	0	0.00	46	4	8.00
MALAT1	0	genome.wustl.edu	37	11	65271779	65271780	+	RNA	INS	-	-	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	65271779	65271780	-	T	INS	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994:0.994	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	tier1			24	0	0.00	42	8	16.00
FUBP1	0	genome.wustl.edu	37	1	78429257	78429257	+	Splice_Site	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	78429257	78429257	G	T	SNP	FUBP1	ENST00000436586	human	ensembl	74_37	-1	known	splice_site	c.1246+2	e14+2	0.999	-	-	-	no_errors	FUBP1	HGNC	ENSG00000162613	tier1	-	-	27	0	0.00	32	4	11.11
EIF4G3	0	genome.wustl.edu	37	1	21307715	21307715	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	21307715	21307715	G	T	SNP	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	missense	c.57	p.F19L	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151	tier1	-	-	32	0	0.00	32	4	10.81
ENSG00000221110	0	genome.wustl.edu	37	9	75906130	75906130	+	RNA	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	9	75906130	75906130	G	T	SNP	ENSG00000221110	ENST00000408183	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AL449083.1	Clone_based_ensembl_gene	ENSG00000221110	tier1	-	-	40	0	0.00	46	4	8.00
ADAMTS16	0	genome.wustl.edu	37	5	5303702	5303702	+	Silent	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	5	5303702	5303702	G	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	silent	c.3009	p.G1003	0.998	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	tier1	-	-	43	0	0.00	38	4	9.52
ENSG00000251615	0	genome.wustl.edu	37	4	8358174	8358174	+	RNA	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	4	8358174	8358174	C	A	SNP	ENSG00000251615	ENST00000505448	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RP11-774O3.3	Clone_based_vega_gene	ENSG00000251615	tier1	-	-	22	0	0.00	16	3	15.79
DCHS1	0	genome.wustl.edu	37	11	6661596	6661596	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	6661596	6661596	G	T	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	missense	c.1249	p.Q417K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	tier1	-	-	70	0	0.00	45	5	10.00
EXOC1	0	genome.wustl.edu	37	4	56736871	56736871	+	Nonsense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	4	56736871	56736871	G	T	SNP	EXOC1	ENST00000346134	human	ensembl	74_37	+1	known	nonsense	c.631	p.E211*	1.000	pfam_Exocyst_Exoc1/SEC3	pfam_Exocyst_Exoc1/SEC3	-	no_errors	EXOC1	HGNC	ENSG00000090989	tier1	-	-	40	0	0.00	25	3	10.71
MURC	0	genome.wustl.edu	37	9	103340465	103340465	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	9	103340465	103340465	C	A	SNP	MURC	ENST00000307584	human	ensembl	74_37	+1	known	missense	c.40	p.H14N	1.000	NULL	NULL	-	no_errors	MURC	HGNC	ENSG00000170681	tier1	-	-	29	0	0.00	35	4	10.26
TRIP12	0	genome.wustl.edu	37	2	230679988	230679988	+	Splice_Site	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	2	230679988	230679988	C	A	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	splice_site	c.1491+1	e8+1	1.000	-	-	-	no_errors	TRIP12	HGNC	ENSG00000153827	tier1	-	-	35	0	0.00	57	5	8.06
ZNF890P	0	genome.wustl.edu	37	7	5161321	5161321	+	RNA	SNP	G	G	C			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	7	5161321	5161321	G	C	SNP	ZNF890P	ENST00000422060	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF890P	HGNC	ENSG00000159904	tier1	-	-	92	0	0.00	152	44	22.45
ENSG00000219492	0	genome.wustl.edu	37	4	9385981	9385981	+	Silent	SNP	A	A	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	4	9385981	9385981	A	T	SNP	ENSG00000219492	ENST00000508324	human	ensembl	74_37	-1	novel	silent	c.663	p.T221	0.656	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	RP11-1396O13.13	Clone_based_vega_gene	ENSG00000219492	tier1	-	-	283	0	0.00	207	54	20.69
KRT6C	0	genome.wustl.edu	37	12	52865298	52865298	+	Silent	SNP	A	A	G			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	12	52865298	52865298	A	G	SNP	KRT6C	ENST00000252250	human	ensembl	74_37	-1	known	silent	c.819	p.D273	0.998	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6C	HGNC	ENSG00000170465	tier1	rs201562541	-	50	0	0.00	111	11	9.02
GALNT14	0	genome.wustl.edu	37	2	31168687	31168687	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	2	31168687	31168687	G	A	SNP	GALNT14	ENST00000349752	human	ensembl	74_37	-1	known	missense	c.704	p.T235I	0.998	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT14	HGNC	ENSG00000158089	tier1	-	-	42	0	0.00	56	29	34.12
ZDBF2	0	genome.wustl.edu	37	2	207173469	207173469	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	2	207173469	207173469	G	T	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.4217	p.G1406V	0.975	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	tier1	-	-	39	0	0.00	115	39	25.16
BSND	0	genome.wustl.edu	37	1	55464975	55464975	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	55464975	55464975	C	T	SNP	BSND	ENST00000371265	human	ensembl	74_37	+1	known	missense	c.116	p.A39V	1.000	NULL	NULL	-	no_errors	BSND	HGNC	ENSG00000162399	tier1	-	-	69	0	0.00	40	4	9.09
DGKI	0	genome.wustl.edu	37	7	137080395	137080395	+	Silent	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	7	137080395	137080395	C	A	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	silent	c.3030	p.V1010	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	tier1	-	-	60	0	0.00	73	29	28.43
NRK	0	genome.wustl.edu	37	X	105153297	105153297	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	X	105153297	105153297	C	T	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	missense	c.1667	p.A556V	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572	tier1	-	-	19	0	0.00	26	26	50.00
CASC3	0	genome.wustl.edu	37	17	38324174	38324174	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	17	38324174	38324174	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	nonsense	c.1723	p.Q575*	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349	tier1	-	-	79	0	0.00	49	62	55.86
SIK3	0	genome.wustl.edu	37	11	116729350	116729350	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	116729350	116729350	G	A	SNP	SIK3	ENST00000375300	human	ensembl	74_37	-1	known	missense	c.2687	p.S896L	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SIK3	HGNC	ENSG00000160584	tier1	-	-	54	0	0.00	20	14	41.18
DAXX	0	genome.wustl.edu	37	6	33289082	33289082	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	6	33289082	33289082	C	A	SNP	DAXX	ENST00000266000	human	ensembl	74_37	-1	known	missense	c.470	p.G157V	0.135	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209	tier1	-	-	52	0	0.00	31	4	11.43
ARID1A	0	genome.wustl.edu	37	1	27106528	27106528	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	27106528	27106528	G	A	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.6139	p.E2047K	1.000	pfam_DUF3518	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	tier1	-	-	53	0	0.00	31	20	39.22
NIN	0	genome.wustl.edu	37	14	51243731	51243731	+	Missense_Mutation	SNP	T	T	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	14	51243731	51243731	T	A	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	missense	c.602	p.H201L	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503	tier1	-	-	25	0	0.00	54	30	35.71
KMT2A	0	genome.wustl.edu	37	11	118344494	118344495	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	118344494	118344495	AG	-	DEL	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	frame_shift_del	c.2620_2621	p.D877fs	1.000:1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058	tier1			41	0	0.00	19	3	13.64
RHOBTB2	0	genome.wustl.edu	37	8	22861951	22861951	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	8	22861951	22861951	G	T	SNP	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	missense	c.4	p.D2Y	1.000	NULL	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853	tier1	-	-	70	0	0.00	28	4	12.50
RNPC3	0	genome.wustl.edu	37	1	104076466	104076467	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	104076466	104076467	-	A	INS	RNPC3	ENST00000423855	human	ensembl	74_37	+1	known	frame_shift_ins	c.346_347	p.K120fs	0.748:0.784	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RNPC3	HGNC	ENSG00000185946	tier1			29	0	0.00	28	7	20.00
KEAP1	0	genome.wustl.edu	37	19	10610197	10610197	+	Silent	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	19	10610197	10610197	G	A	SNP	KEAP1	ENST00000171111	human	ensembl	74_37	-1	known	silent	c.513	p.C171	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999	tier1	-	-	23	0	0.00	27	4	12.90
FAM131C	0	genome.wustl.edu	37	1	16384813	16384813	+	RNA	SNP	G	G	C			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	16384813	16384813	G	C	SNP	FAM131C	ENST00000494078	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FAM131C	HGNC	ENSG00000185519	tier1	-	-	124	0	0.00	51	31	37.80
SLC2A5	0	genome.wustl.edu	37	1	9097956	9097956	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	9097956	9097956	C	A	SNP	SLC2A5	ENST00000377424	human	ensembl	74_37	-1	known	missense	c.1302	p.Q434H	1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Fru_transpt_5,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A5	HGNC	ENSG00000142583	tier1	-	-	67	0	0.00	42	4	8.70
OR11A1	0	genome.wustl.edu	37	6	29395185	29395185	+	Silent	SNP	T	T	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	6	29395185	29395185	T	A	SNP	OR11A1	ENST00000377147	human	ensembl	74_37	-1	known	silent	c.234	p.A78	0.044	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR11A1	HGNC	ENSG00000204694	tier1	-	-	31	0	0.00	28	19	40.43
DPPA5	0	genome.wustl.edu	37	6	74063926	74063926	+	Missense_Mutation	SNP	C	C	G			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	6	74063926	74063926	C	G	SNP	DPPA5	ENST00000370370	human	ensembl	74_37	-1	known	missense	c.23	p.R8T	0.000	NULL	NULL	-	no_errors	DPPA5	HGNC	ENSG00000203909	tier1	-	-	86	0	0.00	59	43	42.16
GIF	0	genome.wustl.edu	37	11	59612858	59612858	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	59612858	59612858	C	A	SNP	GIF	ENST00000257248	human	ensembl	74_37	-1	known	missense	c.69	p.Q23H	0.000	pfam_Cbl-bd_transpt_euk	pfam_Cbl-bd_transpt_euk	-	no_errors	GIF	HGNC	ENSG00000134812	tier1	-	-	42	0	0.00	46	4	8.00
OSCP1	0	genome.wustl.edu	37	1	36888990	36888990	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	36888990	36888990	C	A	SNP	OSCP1	ENST00000235532	human	ensembl	74_37	-1	known	missense	c.594	p.W198C	1.000	NULL	pfam_OSCP1	-	no_errors	OSCP1	HGNC	ENSG00000116885	tier1	-	-	46	0	0.00	46	6	11.54
PALM2-AKAP2	0	genome.wustl.edu	37	9	112900341	112900342	+	In_Frame_Ins	INS	-	-	GAAGCT			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	9	112900341	112900342	-	GAAGCT	INS	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	in_frame_ins	c.2517_2518	p.843in_frame_insEA	0.985:0.982	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	tier1			NA	NA	NA	NA	NA	NA
MRC2	0	genome.wustl.edu	37	17	60758429	60758429	+	Silent	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	17	60758429	60758429	C	A	SNP	MRC2	ENST00000303375	human	ensembl	74_37	+1	known	silent	c.2641	p.R881	0.993	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC2	HGNC	ENSG00000011028	tier1	-	-	57	0	0.00	44	4	8.33
PCDHGA1	0	genome.wustl.edu	37	5	140711128	140711128	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	5	140711128	140711128	C	T	SNP	PCDHGA1	ENST00000517417	human	ensembl	74_37	+1	known	missense	c.877	p.R293C	0.609	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	tier1	rs145926133	-	36	0	0.00	27	4	12.50
ADCY2	0	genome.wustl.edu	37	5	7396579	7396579	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	5	7396579	7396579	C	-	DEL	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	frame_shift_del	c.170	p.C58fs	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	tier1			15	0	0.00	21	2	8.70
VARS	0	genome.wustl.edu	37	6	31750593	31750593	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	6	31750593	31750593	G	T	SNP	VARS	ENST00000375663	human	ensembl	74_37	-1	known	missense	c.1792	p.Q598K	1.000	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS	HGNC	ENSG00000204394	tier1	-	-	36	0	0.00	21	4	16.00
ANKRD20A2	0	genome.wustl.edu	37	9	42375546	42375547	+	RNA	INS	-	-	ACACC			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	9	42375546	42375547	-	ACACC	INS	ANKRD20A2	ENST00000477139	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ANKRD20A2	HGNC	ENSG00000183148	tier1			NA	NA	NA	NA	NA	NA
PGAP1	0	genome.wustl.edu	37	2	197707533	197707533	+	Missense_Mutation	SNP	T	T	G			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	2	197707533	197707533	T	G	SNP	PGAP1	ENST00000354764	human	ensembl	74_37	-1	known	missense	c.2542	p.N848H	0.968	NULL	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121	tier1	-	-	41	0	0.00	105	39	27.08
PLXNB3	0	genome.wustl.edu	37	X	153043144	153043144	+	Splice_Site	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	X	153043144	153043144	G	T	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	splice_site	c.5330+1	e30+1	1.000	-	-	-	no_errors	PLXNB3	HGNC	ENSG00000198753	tier1	-	-	76	0	0.00	57	5	8.06
ADAMTS19	0	genome.wustl.edu	37	5	129072798	129072798	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	5	129072798	129072798	G	T	SNP	ADAMTS19	ENST00000274487	human	ensembl	74_37	+1	known	missense	c.3511	p.V1171L	0.999	pfam_PLAC,pfscan_PLAC	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	tier1	-	-	21	0	0.00	6	22	78.57
GPR112	0	genome.wustl.edu	37	X	135487944	135487944	+	Silent	SNP	T	T	C			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	X	135487944	135487944	T	C	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	silent	c.8748	p.V2916	0.998	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	tier1	-	-	49	0	0.00	65	25	27.78
SHANK1	0	genome.wustl.edu	37	19	51191180	51191180	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	19	51191180	51191180	C	A	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	missense	c.2308	p.A770S	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	tier1	-	-	42	0	0.00	30	4	11.76
CDKN2A	0	genome.wustl.edu	37	9	21968231	21968288	+	Frame_Shift_Del	DEL	ATCGGGGATGTCTGCAGAGGGCAGAAAGAAAACAGGCGTTAGAAACCTGAGGTCAAAG	ATCGGGGATGTCTGCAGAGGGCAGAAAGAAAACAGGCGTTAGAAACCTGAGGTCAAAG	-			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	ATCGGGGATGTCTGCAGAGGGCAGAAAGAAAACAGGCGTTAGAAACCTGAGGTCAAAG	ATCGGGGATGTCTGCAGAGGGCAGAAAGAAAACAGGCGTTAGAAACCTGAGGTCAAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	9	21968231	21968288	ATCGGGGATGTCTGCAGAGGGCAGAAAGAAAACAGGCGTTAGAAACCTGAGGTCAAAG	-	DEL	CDKN2A	ENST00000304494	human	ensembl	74_37	-1	known	frame_shift_del	c.468_458	p.D153fs	0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.014	NULL	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CDKN2A	HGNC	ENSG00000147889	tier1			NA	NA	NA	NA	NA	NA
C2CD2L	0	genome.wustl.edu	37	11	118981867	118981867	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	118981867	118981867	C	A	SNP	C2CD2L	ENST00000336702	human	ensembl	74_37	+1	known	missense	c.787	p.P263T	0.996	NULL	superfamily_C2_dom	-	no_errors	C2CD2L	HGNC	ENSG00000172375	tier1	-	-	74	0	0.00	15	4	21.05
ARRDC5	0	genome.wustl.edu	37	19	4891142	4891142	+	Silent	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	19	4891142	4891142	G	T	SNP	ARRDC5	ENST00000381781	human	ensembl	74_37	-1	known	silent	c.945	p.I315	0.019	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC5	HGNC	ENSG00000205784	tier1	-	-	47	0	0.00	72	27	27.27
KLF8	0	genome.wustl.edu	37	X	56292123	56292123	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	X	56292123	56292123	C	A	SNP	KLF8	ENST00000468660	human	ensembl	74_37	+1	known	missense	c.592	p.P198T	0.992	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF8	HGNC	ENSG00000102349	tier1	-	-	17	0	0.00	47	20	29.85
TSKU	0	genome.wustl.edu	37	11	76507195	76507195	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	76507195	76507195	G	T	SNP	TSKU	ENST00000333090	human	ensembl	74_37	+1	known	missense	c.535	p.A179S	0.009	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	TSKU	HGNC	ENSG00000182704	tier1	-	-	34	0	0.00	28	4	12.50
CHRM2	0	genome.wustl.edu	37	7	136699910	136699910	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	7	136699910	136699910	C	A	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	missense	c.298	p.L100I	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072	tier1	-	-	27	0	0.00	15	3	16.67
AP2A2	0	genome.wustl.edu	37	11	970176	970176	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	970176	970176	G	T	SNP	AP2A2	ENST00000332231	human	ensembl	74_37	+1	known	missense	c.144	p.K48N	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A2	HGNC	ENSG00000183020	tier1	-	-	69	0	0.00	56	5	8.20
FGFR1	0	genome.wustl.edu	37	8	38274849	38274849	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	8	38274849	38274849	G	T	SNP	FGFR1	ENST00000425967	human	ensembl	74_37	-1	known	missense	c.1731	p.N577K	1.000	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	tier1	-	-	26	0	0.00	38	11	22.45
CCDC155	0	genome.wustl.edu	37	19	49910870	49910870	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	19	49910870	49910870	G	A	SNP	CCDC155	ENST00000447857	human	ensembl	74_37	+1	known	missense	c.935	p.R312H	0.998	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609	tier1	-	-	112	0	0.00	118	56	32.18
CTPS1	0	genome.wustl.edu	37	1	41461588	41461588	+	Splice_Site	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	41461588	41461588	G	T	SNP	CTPS1	ENST00000372616	human	ensembl	74_37	+1	known	splice_site	c.721-1	e7-1	1.000	-	-	-	no_errors	CTPS1	HGNC	ENSG00000171793	tier1	-	-	46	0	0.00	42	4	8.70
IFITM3	0	genome.wustl.edu	37	11	320723	320723	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	320723	320723	C	T	SNP	IFITM3	ENST00000399808	human	ensembl	74_37	-1	known	missense	c.91	p.V31M	0.000	NULL	pfam_CD225/Dispanin_fam	-	no_errors	IFITM3	HGNC	ENSG00000142089	tier1	rs199582787	-	63	0	0.00	42	9	17.65
DENND4C	0	genome.wustl.edu	37	9	19371794	19371794	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	9	19371794	19371794	C	A	SNP	DENND4C	ENST00000602925	human	ensembl	74_37	+1	known	missense	c.5569	p.L1857I	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	tier1	-	-	52	0	0.00	46	4	8.00
METTL12	0	genome.wustl.edu	37	11	62434093	62434093	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	62434093	62434093	C	A	SNP	METTL12	ENST00000532971	human	ensembl	74_37	+1	known	missense	c.293	p.P98Q	0.977	pfam_Methyltransf_11	pfam_Methyltransf_11	-	no_errors	METTL12	HGNC	ENSG00000214756	tier1	-	-	36	0	0.00	42	4	8.70
DLGAP3	0	genome.wustl.edu	37	1	35351792	35351792	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	35351792	35351792	C	T	SNP	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	missense	c.1481	p.G494D	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544	tier1	-	-	42	0	0.00	14	3	17.65
SLC1A6	0	genome.wustl.edu	37	19	15082594	15082594	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	19	15082594	15082594	G	T	SNP	SLC1A6	ENST00000221742	human	ensembl	74_37	-1	known	missense	c.298	p.L100M	1.000	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	tier1	-	-	71	0	0.00	46	4	8.00
C2orf72	0	genome.wustl.edu	37	2	231911630	231911630	+	Missense_Mutation	SNP	T	T	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	2	231911630	231911630	T	A	SNP	C2orf72	ENST00000373640	human	ensembl	74_37	+1	putative	missense	c.782	p.L261Q	0.873	NULL	NULL	-	no_errors	C2orf72	HGNC	ENSG00000204128	tier1	-	-	86	0	0.00	103	34	24.82
KCNH7	0	genome.wustl.edu	37	2	163256864	163256864	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	2	163256864	163256864	C	A	SNP	KCNH7	ENST00000332142	human	ensembl	74_37	-1	known	missense	c.2242	p.G748W	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	tier1	-	-	45	0	0.00	66	6	8.33
SCGB1C1	0	genome.wustl.edu	37	11	194424	194424	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	194424	194424	G	A	SNP	SCGB1C1	ENST00000342878	human	ensembl	74_37	+1	known	missense	c.262	p.V88M	1.000	pfam_Secretoglobin,superfamily_Secretoglobin	pfam_Secretoglobin,superfamily_Secretoglobin	-	no_errors	SCGB1C1	HGNC	ENSG00000188076	tier1	-	-	101	0	0.00	75	11	12.79
CLDN24	0	genome.wustl.edu	37	4	184243010	184243010	+	Silent	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	4	184243010	184243010	G	A	SNP	CLDN24	ENST00000541814	human	ensembl	74_37	-1	known	silent	c.570	p.S190	0.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN24	HGNC	ENSG00000185758	tier1	-	-	27	0	0.00	30	4	11.76
MT-ATP6	0	genome.wustl.edu	37	MT	8714	8714	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	MT	8714	8714	C	A	SNP	MT-ATP6	ENST00000361899	human	ensembl	74_37	+1	known	missense	c.188	p.T63N	NULL	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	-	no_errors	MT-ATP6	HGNC	ENSG00000198899	tier1	-	-	46	0	0.00	9	2	18.18
LCP1	0	genome.wustl.edu	37	13	46717443	46717443	+	Silent	SNP	C	C	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	13	46717443	46717443	C	T	SNP	LCP1	ENST00000323076	human	ensembl	74_37	-1	known	silent	c.1350	p.L450	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF_hand_dom,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_dom,smart_CH-domain,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	LCP1	HGNC	ENSG00000136167	tier1	-	-	89	0	0.00	94	29	23.58
DCHS1	0	genome.wustl.edu	37	11	6662445	6662445	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	6662445	6662445	C	A	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	missense	c.400	p.A134S	0.990	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	tier1	-	-	43	0	0.00	37	4	9.76
NTM	0	genome.wustl.edu	37	11	132205623	132205624	+	RNA	INS	-	-	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	132205623	132205624	-	T	INS	NTM	ENST00000474900	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	NTM	HGNC	ENSG00000182667	tier1			13	0	0.00	10	5	33.33
FMOD	0	genome.wustl.edu	37	1	203316940	203316940	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	203316940	203316940	C	A	SNP	FMOD	ENST00000354955	human	ensembl	74_37	-1	known	missense	c.459	p.K153N	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	FMOD	HGNC	ENSG00000122176	tier1	-	-	35	0	0.00	45	4	8.16
ENSG00000221664	0	genome.wustl.edu	37	1	77857120	77857125	+	RNA	DEL	ATATAC	ATATAC	-			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	ATATAC	ATATAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	77857120	77857125	ATATAC	-	DEL	ENSG00000221664	ENST00000408737	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.993:0.996:0.997:0.998:0.999:0.999	-	-	-	no_errors	AC095030.1	Clone_based_ensembl_gene	ENSG00000221664	tier1			NA	NA	NA	NA	NA	NA
SURF6	0	genome.wustl.edu	37	9	136198685	136198685	+	RNA	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	9	136198685	136198685	C	A	SNP	SURF6	ENST00000468290	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SURF6	HGNC	ENSG00000148296	tier1	-	-	42	0	0.00	38	4	9.52
KCNE1L	0	genome.wustl.edu	37	X	108868055	108868055	+	Silent	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	X	108868055	108868055	G	T	SNP	KCNE1L	ENST00000372101	human	ensembl	74_37	-1	known	silent	c.195	p.L65	1.000	NULL	NULL	-	no_errors	KCNE1L	HGNC	ENSG00000176076	tier1	-	-	64	0	0.00	51	5	8.77
CD2AP	0	genome.wustl.edu	37	6	47573998	47573998	+	Silent	SNP	C	C	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	6	47573998	47573998	C	T	SNP	CD2AP	ENST00000359314	human	ensembl	74_37	+1	known	silent	c.1515	p.F505	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	CD2AP	HGNC	ENSG00000198087	tier1	-	-	48	0	0.00	92	26	22.03
TYK2	0	genome.wustl.edu	37	19	10463610	10463610	+	Silent	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	19	10463610	10463610	G	A	SNP	TYK2	ENST00000264818	human	ensembl	74_37	-1	known	silent	c.3192	p.P1064	0.036	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397	tier1	-	-	54	0	0.00	12	15	55.56
SFXN5	0	genome.wustl.edu	37	2	73172112	73172112	+	RNA	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	2	73172112	73172112	C	A	SNP	SFXN5	ENST00000461352	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SFXN5	HGNC	ENSG00000144040	tier1	-	-	59	0	0.00	41	4	8.89
CCAR2	0	genome.wustl.edu	37	8	22463645	22463645	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	8	22463645	22463645	C	A	SNP	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	missense	c.106	p.P36T	1.000	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941	tier1	-	-	105	0	0.00	26	4	12.90
SLC38A8	0	genome.wustl.edu	37	16	84063139	84063139	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	16	84063139	84063139	G	A	SNP	SLC38A8	ENST00000299709	human	ensembl	74_37	-1	known	missense	c.650	p.S217F	0.998	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A8	HGNC	ENSG00000166558	tier1	-	-	105	0	0.00	45	33	42.31
BTBD10	0	genome.wustl.edu	37	11	13441262	13441262	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	13441262	13441262	G	-	DEL	BTBD10	ENST00000278174	human	ensembl	74_37	-1	known	frame_shift_del	c.329	p.P110fs	1.000	NULL	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	BTBD10	HGNC	ENSG00000148925	tier1			38	0	0.00	14	66	82.50
ENSG00000239012	0	genome.wustl.edu	37	1	142653747	142653747	+	RNA	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	142653747	142653747	G	T	SNP	ENSG00000239012	ENST00000459390	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AL583842.1	Clone_based_ensembl_gene	ENSG00000239012	tier1	-	-	235	1	0.42	414	65	13.54
LOXHD1	0	genome.wustl.edu	37	18	44146368	44146368	+	Silent	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	18	44146368	44146368	G	T	SNP	LOXHD1	ENST00000536736	human	ensembl	74_37	-1	known	silent	c.2289	p.A763	0.277	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	-	no_errors	LOXHD1	HGNC	ENSG00000167210	tier1	-	-	40	0	0.00	27	4	12.90
SPTY2D1	0	genome.wustl.edu	37	11	18636260	18636260	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	18636260	18636260	C	A	SNP	SPTY2D1	ENST00000336349	human	ensembl	74_37	-1	known	missense	c.1561	p.G521W	1.000	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119	tier1	-	-	52	0	0.00	43	4	8.51
MTMR8	0	genome.wustl.edu	37	X	63563503	63563503	+	Missense_Mutation	SNP	A	A	C			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	X	63563503	63563503	A	C	SNP	MTMR8	ENST00000374852	human	ensembl	74_37	-1	known	missense	c.963	p.I321M	1.000	smart_Tyr_Pase_cat	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat	-	no_errors	MTMR8	HGNC	ENSG00000102043	tier1	-	-	98	0	0.00	128	33	20.50
ARRDC5	0	genome.wustl.edu	37	19	4891074	4891074	+	Missense_Mutation	SNP	G	G	C			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	19	4891074	4891074	G	C	SNP	ARRDC5	ENST00000381781	human	ensembl	74_37	-1	known	missense	c.1013	p.P338R	0.000	superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC5	HGNC	ENSG00000205784	tier1	-	-	73	0	0.00	100	62	37.80
RP1L1	0	genome.wustl.edu	37	8	10470651	10470651	+	Silent	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	8	10470651	10470651	G	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.957	p.G319	1.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	tier1	-	-	94	0	0.00	35	5	12.50
HNRNPA3	0	genome.wustl.edu	37	2	178080861	178080861	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	2	178080861	178080861	G	T	SNP	HNRNPA3	ENST00000392524	human	ensembl	74_37	+1	known	missense	c.498	p.K166N	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA3	HGNC	ENSG00000170144	tier1	-	-	31	0	0.00	20	4	16.67
DCC	0	genome.wustl.edu	37	18	49867196	49867196	+	Silent	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	18	49867196	49867196	G	T	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	silent	c.39	p.L13	1.000	pfscan_Ig-like_dom	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323	tier1	-	-	51	0	0.00	37	4	9.76
ATAD2	0	genome.wustl.edu	37	8	124382158	124382159	+	In_Frame_Ins	INS	-	-	TCA			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	8	124382158	124382159	-	TCA	INS	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	in_frame_ins	c.834_833	p.278in_frame_insD	0.866:0.899	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	tier1			16	0	0.00	49	18	26.87
PTPRF	0	genome.wustl.edu	37	1	44088825	44088825	+	RNA	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	44088825	44088825	C	A	SNP	PTPRF	ENST00000496447	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTPRF	HGNC	ENSG00000142949	tier1	-	-	52	0	0.00	37	4	9.76
PTPN4	0	genome.wustl.edu	37	2	120704097	120704097	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	2	120704097	120704097	G	A	SNP	PTPN4	ENST00000263708	human	ensembl	74_37	+1	known	missense	c.1603	p.G535R	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_PDZ	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	PTPN4	HGNC	ENSG00000088179	tier1	-	-	53	0	0.00	76	21	21.65
HACE1	0	genome.wustl.edu	37	6	105219148	105219148	+	Missense_Mutation	SNP	C	C	G			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	6	105219148	105219148	C	G	SNP	HACE1	ENST00000262903	human	ensembl	74_37	-1	known	missense	c.2131	p.E711Q	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382	tier1	-	-	56	0	0.00	100	26	20.47
TGFBRAP1	0	genome.wustl.edu	37	2	105896857	105896857	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	2	105896857	105896857	C	A	SNP	TGFBRAP1	ENST00000258449	human	ensembl	74_37	-1	known	missense	c.1445	p.W482L	1.000	pfam_VPS39/TGF_beta_rcpt-assoc_1	pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron	-	no_errors	TGFBRAP1	HGNC	ENSG00000135966	tier1	-	-	31	0	0.00	43	4	8.33
CD72	0	genome.wustl.edu	37	9	35616663	35616663	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	9	35616663	35616663	G	T	SNP	CD72	ENST00000259633	human	ensembl	74_37	-1	known	missense	c.286	p.L96I	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD72	HGNC	ENSG00000137101	tier1	-	-	69	0	0.00	44	4	8.33
RNF212	0	genome.wustl.edu	37	4	1087327	1087328	+	In_Frame_Ins	INS	-	-	CTGCCCAGGCTGGAGCCAGCC			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	4	1087327	1087328	-	CTGCCCAGGCTGGAGCCAGCC	INS	RNF212	ENST00000333673	human	ensembl	74_37	-1	known	in_frame_ins	c.722_721	p.S241in_frame_insWLAPAWAA	0.085:0.000	NULL	pfscan_Znf_RING	-	no_errors	RNF212	HGNC	ENSG00000178222	tier1			NA	NA	NA	NA	NA	NA
PAQR4	0	genome.wustl.edu	37	16	3021235	3021235	+	Nonsense_Mutation	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	16	3021235	3021235	G	T	SNP	PAQR4	ENST00000318782	human	ensembl	74_37	+1	known	nonsense	c.244	p.G82*	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR4	HGNC	ENSG00000162073	tier1	-	-	65	0	0.00	31	4	11.43
LINC01001	0	genome.wustl.edu	37	11	134722	134722	+	RNA	SNP	G	G	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	11	134722	134722	G	T	SNP	LINC01001	ENST00000527683	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.193	-	-	-	no_errors	LINC01001	HGNC	ENSG00000230724	tier1	-	-	15	0	0.00	21	6	22.22
TNFRSF10B	0	genome.wustl.edu	37	8	22880256	22880256	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	8	22880256	22880256	C	A	SNP	TNFRSF10B	ENST00000276431	human	ensembl	74_37	-1	known	missense	c.1251	p.K417N	0.000	pirsf_TNFR_10,pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pirsf_TNFR_10,pfam_Death_domain,pfam_TNFR/NGFR_Cys_rich_reg,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_10,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF10B	HGNC	ENSG00000120889	tier1	-	-	42	0	0.00	13	3	18.75
WASH3P	0	genome.wustl.edu	37	15	102515340	102515340	+	RNA	SNP	G	G	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	15	102515340	102515340	G	A	SNP	WASH3P	ENST00000557932	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WASH3P	HGNC	ENSG00000185596	tier1	-	-	305	0	0.00	89	68	43.31
MGA	0	genome.wustl.edu	37	15	41961309	41961309	+	Missense_Mutation	SNP	G	G	C			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	15	41961309	41961309	G	C	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	missense	c.217	p.G73R	1.000	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	tier1	-	-	50	0	0.00	78	30	27.78
PIK3R3	0	genome.wustl.edu	37	1	46598560	46598560	+	RNA	SNP	C	C	A			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	1	46598560	46598560	C	A	SNP	PIK3R3	ENST00000493202	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	PIK3R3	HGNC	ENSG00000117461	tier1	-	-	42	0	0.00	24	4	14.29
CEACAM5	0	genome.wustl.edu	37	19	42224076	42224076	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	19	42224076	42224076	C	T	SNP	CEACAM5	ENST00000221992	human	ensembl	74_37	+1	known	nonsense	c.1720	p.Q574*	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM5	HGNC	ENSG00000105388	tier1	-	-	107	0	0.00	136	66	32.67
DDRGK1	0	genome.wustl.edu	37	20	3172212	3172213	+	RNA	INS	-	-	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	20	3172212	3172213	-	T	INS	DDRGK1	ENST00000496781	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.009	-	-	-	no_errors	DDRGK1	HGNC	ENSG00000198171	tier1			24	0	0.00	20	4	16.67
ABCC2	0	genome.wustl.edu	37	10	101595898	101595898	+	Silent	SNP	C	C	T			TCGA-SI-A71Q-01A-12D-A33E-09	TCGA-SI-A71Q-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	289dd857-9301-4214-8ae5-3ae1f84be485	bbc63b41-0a71-4886-9194-ffdeae6bb13f	10	101595898	101595898	C	T	SNP	ABCC2	ENST00000370449	human	ensembl	74_37	+1	known	silent	c.3465	p.T1155	0.997	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839	tier1	-	-	55	0	0.00	32	44	57.89
