Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SUZ12	0	genome.wustl.edu	37	17	30322708	30322732	+	Frame_Shift_Del	DEL	TCCGTCCACAAGAAATGGAAGTAGA	TCCGTCCACAAGAAATGGAAGTAGA	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	TCCGTCCACAAGAAATGGAAGTAGA	TCCGTCCACAAGAAATGGAAGTAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	17	30322708	30322732	TCCGTCCACAAGAAATGGAAGTAGA	-	DEL	SUZ12	ENST00000322652	human	ensembl	74_37	+1	known	frame_shift_del	c.1721_1745	p.R575fs	1.000:0.999:1.000:1.000:0.967:1.000:1.000:0.973:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_Polycomb_protein_VEFS-Box	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691	tier1			NA	NA	NA	NA	NA	NA
EVL	0	genome.wustl.edu	37	14	100595978	100595978	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	14	100595978	100595978	G	A	SNP	EVL	ENST00000392920	human	ensembl	74_37	+1	known	missense	c.796	p.G266R	0.985	pirsf_Vasodilator_phosphoprotein	pfam_WH1/EVH1,pfam_VASP_tetra,smart_WH1/EVH1,pirsf_Vasodilator_phosphoprotein,pfscan_WH1/EVH1	-	no_errors	EVL	HGNC	ENSG00000196405	tier1	-	-	52	0	0.00	40	10	20.00
NDST2	0	genome.wustl.edu	37	10	75563007	75563007	+	Silent	SNP	A	A	G			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	10	75563007	75563007	A	G	SNP	NDST2	ENST00000309979	human	ensembl	74_37	-1	known	silent	c.2253	p.L751	0.016	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST2	HGNC	ENSG00000166507	tier1	-	-	67	0	0.00	42	4	8.70
PLTP	0	genome.wustl.edu	37	20	44540098	44540098	+	Silent	SNP	C	C	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	20	44540098	44540098	C	T	SNP	PLTP	ENST00000542937	human	ensembl	74_37	-1	known	silent	c.54	p.P18	0.983	NULL	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	PLTP	HGNC	ENSG00000100979	tier1	-	-	101	0	0.00	36	5	12.20
DGKG	0	genome.wustl.edu	37	3	186015929	186015929	+	Silent	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	3	186015929	186015929	G	T	SNP	DGKG	ENST00000265022	human	ensembl	74_37	-1	known	silent	c.234	p.A78	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	tier1	-	-	90	0	0.00	54	7	11.48
TC2N	0	genome.wustl.edu	37	14	92251630	92251630	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	14	92251630	92251630	G	T	SNP	TC2N	ENST00000340892	human	ensembl	74_37	-1	known	missense	c.1238	p.S413Y	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	TC2N	HGNC	ENSG00000165929	tier1	-	-	64	0	0.00	39	4	9.30
TBC1D20	0	genome.wustl.edu	37	20	422183	422183	+	RNA	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	20	422183	422183	G	T	SNP	TBC1D20	ENST00000461188	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TBC1D20	HGNC	ENSG00000125875	tier1	-	-	48	0	0.00	51	7	12.07
TTN	0	genome.wustl.edu	37	2	179416365	179416365	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	2	179416365	179416365	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.83558	p.S27853Y	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	78	0	0.00	45	4	8.16
COL11A2	0	genome.wustl.edu	37	6	33147260	33147260	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	6	33147260	33147260	G	A	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.1451	p.A484V	0.998	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248	tier1	rs143965711	-	77	0	0.00	36	4	10.00
UBR4	0	genome.wustl.edu	37	1	19493694	19493694	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	1	19493694	19493694	T	-	DEL	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	frame_shift_del	c.3931	p.I1311fs	0.967	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	tier1			50	0	0.00	14	2	12.50
HS6ST3	0	genome.wustl.edu	37	13	97485014	97485014	+	Silent	SNP	T	T	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	13	97485014	97485014	T	A	SNP	HS6ST3	ENST00000376705	human	ensembl	74_37	+1	known	silent	c.978	p.T326	0.934	pfam_Sulfotransferase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST3	HGNC	ENSG00000185352	tier1	-	-	64	0	0.00	38	5	11.63
MN1	0	genome.wustl.edu	37	22	28195625	28195627	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	22	28195625	28195627	GCT	-	DEL	MN1	ENST00000302326	human	ensembl	74_37	-1	known	in_frame_del	c.907_905	p.Q302in_frame_del	0.962:0.987:0.994	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	tier1			35	0	0.00	12	3	20.00
FAM178A	0	genome.wustl.edu	37	10	102685930	102685930	+	Silent	SNP	G	G	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	10	102685930	102685930	G	A	SNP	FAM178A	ENST00000370271	human	ensembl	74_37	+1	known	silent	c.2196	p.T732	0.005	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906	tier1	-	-	28	0	0.00	13	3	18.75
FRMPD2	0	genome.wustl.edu	37	10	49414887	49414887	+	Silent	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	10	49414887	49414887	G	T	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	silent	c.1701	p.I567	0.998	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	tier1	-	-	106	0	0.00	33	10	23.26
PRPF6	0	genome.wustl.edu	37	20	62632451	62632451	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	20	62632451	62632451	G	T	SNP	PRPF6	ENST00000266079	human	ensembl	74_37	+1	known	missense	c.1045	p.A349S	1.000	smart_HAT	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	tier1	-	-	34	0	0.00	29	3	9.38
PLCZ1	0	genome.wustl.edu	37	12	18854541	18854549	+	In_Frame_Del	DEL	TCCTCCTCC	TCCTCCTCC	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	TCCTCCTCC	TCCTCCTCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	12	18854541	18854549	TCCTCCTCC	-	DEL	PLCZ1	ENST00000538330	human	ensembl	74_37	-1	putative	in_frame_del	c.257_249	p.EEE83in_frame_del	0.019:0.025:0.029:0.032:0.034:0.034:0.032:0.029:0.024	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_Pinositol-sp_Y,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151	tier1			NA	NA	NA	NA	NA	NA
KRTAP10-9	0	genome.wustl.edu	37	21	46048196	46048197	+	RNA	INS	-	-	CGCTGGT			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	21	46048196	46048197	-	CGCTGGT	INS	KRTAP10-9	ENST00000484861	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837	tier1			NA	NA	NA	NA	NA	NA
MIR302A	0	genome.wustl.edu	37	4	113569407	113569407	+	RNA	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	4	113569407	113569407	G	T	SNP	MIR302A	ENST00000385192	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR302A	HGNC	ENSG00000207927	tier1	-	-	106	0	0.00	35	4	10.26
NTHL1	0	genome.wustl.edu	37	16	2096132	2096133	+	Frame_Shift_Ins	INS	-	-	G			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	16	2096132	2096133	-	G	INS	NTHL1	ENST00000219066	human	ensembl	74_37	-1	known	frame_shift_ins	c.375_374	p.V127fs	0.794:1.000	superfamily_DNA_glycosylase	pfam_HhH-GPD_domain,pfam_HhH_motif,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	NTHL1	HGNC	ENSG00000065057	tier1			65	0	0.00	30	3	9.09
PASD1	0	genome.wustl.edu	37	X	150789982	150789982	+	Silent	SNP	A	A	G			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	X	150789982	150789982	A	G	SNP	PASD1	ENST00000370357	human	ensembl	74_37	+1	known	silent	c.336	p.L112	0.001	superfamily_PAS	superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049	tier1	-	-	133	0	0.00	51	32	38.55
KAZN	0	genome.wustl.edu	37	1	15430617	15430617	+	Silent	SNP	C	C	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	1	15430617	15430617	C	T	SNP	KAZN	ENST00000376030	human	ensembl	74_37	+1	known	silent	c.1980	p.I660	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	KAZN	HGNC	ENSG00000189337	tier1	-	-	60	0	0.00	4	14	77.78
KIAA1217	0	genome.wustl.edu	37	10	24813274	24813274	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	10	24813274	24813274	A	-	DEL	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	frame_shift_del	c.2479	p.G828fs	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	tier1			65	0	0.00	17	2	10.53
MYC	0	genome.wustl.edu	37	8	128750604	128750605	+	In_Frame_Ins	INS	-	-	CAG			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	8	128750604	128750605	-	CAG	INS	MYC	ENST00000377970	human	ensembl	74_37	+1	known	in_frame_ins	c.141_142	p.51in_frame_insQ	1.000:1.000	pfam_Tscrpt_reg_Myc_N	pfam_Tscrpt_reg_Myc_N,pfam_Myc-LZ,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYC	HGNC	ENSG00000136997	tier1			102	0	0.00	60	15	20.00
COL21A1	0	genome.wustl.edu	37	6	55956427	55956427	+	RNA	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	6	55956427	55956427	G	T	SNP	COL21A1	ENST00000467045	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COL21A1	HGNC	ENSG00000124749	tier1	-	-	39	0	0.00	25	4	13.79
PKHD1L1	0	genome.wustl.edu	37	8	110457290	110457290	+	Missense_Mutation	SNP	T	T	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	8	110457290	110457290	T	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.5192	p.V1731E	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	tier1	-	-	66	0	0.00	49	5	9.26
IZUMO3	0	genome.wustl.edu	37	9	24543733	24543733	+	Silent	SNP	A	A	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	9	24543733	24543733	A	T	SNP	IZUMO3	ENST00000543880	human	ensembl	74_37	-1	novel	silent	c.510	p.A170	0.882	NULL	NULL	-	no_errors	IZUMO3	HGNC	ENSG00000205442	tier1	-	-	68	0	0.00	23	17	42.50
MKRN1	0	genome.wustl.edu	37	7	140158957	140158957	+	Silent	SNP	C	C	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	7	140158957	140158957	C	A	SNP	MKRN1	ENST00000255977	human	ensembl	74_37	-1	known	silent	c.621	p.V207	0.935	NULL	pfam_Znf_CCCH,pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN1	HGNC	ENSG00000133606	tier1	-	-	57	0	0.00	24	4	14.29
KIAA1244	0	genome.wustl.edu	37	6	138644891	138644891	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	6	138644891	138644891	C	T	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	missense	c.4850	p.A1617V	1.000	NULL	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379	tier1	-	-	64	0	0.00	34	4	10.53
FCGBP	0	genome.wustl.edu	37	19	40377034	40377034	+	Silent	SNP	G	G	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	19	40377034	40377034	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	silent	c.11388	p.N3796	0.470	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	tier1	rs201304305	-	51	0	0.00	44	5	10.20
MT-RNR2	0	genome.wustl.edu	37	MT	2814	2814	+	RNA	SNP	G	G	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	MT	2814	2814	G	A	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	344	1	0.29	32	210	86.42
FOXA1	0	genome.wustl.edu	37	14	38064348	38064350	+	RNA	DEL	GCG	GCG	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	GCG	GCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	14	38064348	38064350	GCG	-	DEL	FOXA1	ENST00000557418	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998:0.994:0.997	-	-	-	no_errors	FOXA1	HGNC	ENSG00000129514	tier1			8	0	0.00	6	4	40.00
GBP5	0	genome.wustl.edu	37	1	89734500	89734500	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	1	89734500	89734500	C	-	DEL	GBP5	ENST00000343435	human	ensembl	74_37	-1	known	frame_shift_del	c.230	p.G77fs	0.992	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP5	HGNC	ENSG00000154451	tier1			53	0	0.00	18	2	10.00
MT-RNR2	0	genome.wustl.edu	37	MT	2978	2978	+	RNA	SNP	T	T	C			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	MT	2978	2978	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	40	0	0.00	29	4	12.12
PCDHB6	0	genome.wustl.edu	37	5	140530097	140530097	+	Nonsense_Mutation	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	5	140530097	140530097	G	T	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	nonsense	c.259	p.E87*	0.982	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	tier1	-	-	64	0	0.00	44	4	8.33
LOC100130331	0	genome.wustl.edu	37	1	238090583	238090583	+	RNA	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	1	238090583	238090583	G	T	SNP	LOC100130331	ENST00000450451	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-193H5.1	Clone_based_vega_gene	ENSG00000237250	tier1	-	-	37	0	0.00	16	4	20.00
RABGAP1L	0	genome.wustl.edu	37	1	174652688	174652688	+	Missense_Mutation	SNP	G	G	C			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	1	174652688	174652688	G	C	SNP	RABGAP1L	ENST00000251507	human	ensembl	74_37	+1	known	missense	c.1853	p.G618A	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1L	HGNC	ENSG00000152061	tier1	-	-	145	0	0.00	80	7	8.05
HMGCS2	0	genome.wustl.edu	37	1	120306940	120306940	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	1	120306940	120306940	G	-	DEL	HMGCS2	ENST00000369406	human	ensembl	74_37	-1	known	frame_shift_del	c.414	p.A140fs	1.000	pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS2	HGNC	ENSG00000134240	tier1			61	0	0.00	16	2	11.11
FZD2	0	genome.wustl.edu	37	17	42636593	42636593	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	17	42636593	42636593	C	T	SNP	FZD2	ENST00000315323	human	ensembl	74_37	+1	known	missense	c.1537	p.R513C	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD2	HGNC	ENSG00000180340	tier1	-	-	103	0	0.00	55	5	8.33
CDH23	0	genome.wustl.edu	37	10	73157033	73157034	+	Frame_Shift_Ins	INS	-	-	CGAGG			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	10	73157033	73157034	-	CGAGG	INS	CDH23	ENST00000461841	human	ensembl	74_37	+1	known	frame_shift_ins	c.88_89	p.G34fs	0.008:0.011	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	tier1			NA	NA	NA	NA	NA	NA
SEC31B	0	genome.wustl.edu	37	10	102250030	102250030	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	10	102250030	102250030	G	T	SNP	SEC31B	ENST00000370345	human	ensembl	74_37	-1	known	missense	c.2700	p.N900K	0.054	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	tier1	-	-	50	0	0.00	31	4	11.43
GCNT6	0	genome.wustl.edu	37	6	10634149	10634149	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	6	10634149	10634149	G	A	SNP	GCNT6	ENST00000417671	human	ensembl	74_37	+1	known	missense	c.157	p.A53T	0.000	NULL	pfam_Glyco_trans_14	-	no_errors	GCNT6	HGNC	ENSG00000205318	tier1	-	-	59	0	0.00	25	16	39.02
CPA2	0	genome.wustl.edu	37	7	129919465	129919465	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	7	129919465	129919465	G	T	SNP	CPA2	ENST00000222481	human	ensembl	74_37	+1	known	missense	c.950	p.G317V	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA2	HGNC	ENSG00000158516	tier1	rs150060449	-	47	0	0.00	42	4	8.70
KHDRBS2	0	genome.wustl.edu	37	6	62757794	62757794	+	Missense_Mutation	SNP	C	C	G			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	6	62757794	62757794	C	G	SNP	KHDRBS2	ENST00000281156	human	ensembl	74_37	-1	known	missense	c.325	p.D109H	1.000	smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS2	HGNC	ENSG00000112232	tier1	-	-	99	0	0.00	32	13	28.89
CPNE9	0	genome.wustl.edu	37	3	9771323	9771323	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	3	9771323	9771323	C	T	SNP	CPNE9	ENST00000383832	human	ensembl	74_37	+1	known	missense	c.1609	p.R537W	0.998	NULL	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE9	HGNC	ENSG00000144550	tier1	-	-	89	0	0.00	33	37	52.86
PAXIP1	0	genome.wustl.edu	37	7	154752762	154752762	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	7	154752762	154752762	C	T	SNP	PAXIP1	ENST00000397192	human	ensembl	74_37	-1	known	missense	c.2275	p.A759T	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212	tier1	-	-	111	0	0.00	43	19	30.65
ZC3H7B	0	genome.wustl.edu	37	22	41751983	41751983	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	22	41751983	41751983	G	A	SNP	ZC3H7B	ENST00000351589	human	ensembl	74_37	+1	known	missense	c.2300	p.R767H	1.000	smart_Znf_CCCH	pfam_Znf_CCCH,pfam_TPR_1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403	tier1	-	-	48	0	0.00	20	4	16.67
MN1	0	genome.wustl.edu	37	22	28194881	28194883	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	22	28194881	28194883	GCT	-	DEL	MN1	ENST00000302326	human	ensembl	74_37	-1	known	in_frame_del	c.1651_1649	p.Q550in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	tier1			43	0	0.00	11	2	15.38
YIPF2	0	genome.wustl.edu	37	19	11038362	11038364	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	19	11038362	11038364	GCT	-	DEL	YIPF2	ENST00000253031	human	ensembl	74_37	-1	known	in_frame_del	c.223_221	p.Q74in_frame_del	0.404:0.366:0.337	NULL	pfam_Yip1	-	no_errors	YIPF2	HGNC	ENSG00000130733	tier1			44	0	0.00	26	4	13.33
YTHDF3	0	genome.wustl.edu	37	8	64124995	64124995	+	RNA	DEL	A	A	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	8	64124995	64124995	A	-	DEL	YTHDF3	ENST00000521674	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	YTHDF3	HGNC	ENSG00000185728	tier1			58	0	0.00	17	3	15.00
DLGAP2	0	genome.wustl.edu	37	8	1497797	1497797	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	8	1497797	1497797	C	T	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.938	p.P313L	0.999	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010	tier1	-	-	73	0	0.00	54	7	11.48
USP46	0	genome.wustl.edu	37	4	53492298	53492298	+	Missense_Mutation	SNP	T	T	C			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	4	53492298	53492298	T	C	SNP	USP46	ENST00000441222	human	ensembl	74_37	-1	known	missense	c.448	p.K150E	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP46	HGNC	ENSG00000109189	tier1	-	-	209	0	0.00	79	56	41.48
SLFNL1	0	genome.wustl.edu	37	1	41483596	41483596	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	1	41483596	41483596	C	-	DEL	SLFNL1	ENST00000302946	human	ensembl	74_37	-1	known	frame_shift_del	c.668	p.R223fs	0.993	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4	-	no_errors	SLFNL1	HGNC	ENSG00000171790	tier1			59	0	0.00	17	2	10.53
APOL3	0	genome.wustl.edu	37	22	36545175	36545176	+	Frame_Shift_Ins	INS	-	-	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	22	36545175	36545176	-	T	INS	APOL3	ENST00000397289	human	ensembl	74_37	-1	known	frame_shift_ins	c.239_238	p.T80fs	0.000:0.001	NULL	NULL	-	no_errors	APOL3	HGNC	ENSG00000128284	tier1			61	0	0.00	16	3	15.79
NME7	0	genome.wustl.edu	37	1	169292501	169292501	+	Silent	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	1	169292501	169292501	G	T	SNP	NME7	ENST00000367811	human	ensembl	74_37	-1	known	silent	c.132	p.R44	0.000	smart_Uncharacterised_DM10,pirsf_NDK7	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Uncharacterised_DM10,smart_Nucleoside_diP_kinase,pirsf_NDK7,prints_Nucleoside_diP_kinase	-	no_errors	NME7	HGNC	ENSG00000143156	tier1	-	-	40	0	0.00	29	4	12.12
TAPSAR1	0	genome.wustl.edu	37	6	32813255	32813255	+	RNA	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	6	32813255	32813255	G	T	SNP	TAPSAR1	ENST00000412095	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TAPSAR1	HGNC	ENSG00000204261	tier1	-	-	42	0	0.00	22	3	11.54
COL9A3	0	genome.wustl.edu	37	20	61448936	61448936	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	20	61448936	61448936	C	-	DEL	COL9A3	ENST00000343916	human	ensembl	74_37	+1	known	frame_shift_del	c.96	p.G35fs	0.499	pfam_Collagen	pfam_Collagen	-	no_errors	COL9A3	HGNC	ENSG00000092758	tier1			21	0	0.00	14	2	12.50
TYK2	0	genome.wustl.edu	37	19	10477123	10477123	+	Missense_Mutation	SNP	A	A	G			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	19	10477123	10477123	A	G	SNP	TYK2	ENST00000264818	human	ensembl	74_37	-1	known	missense	c.599	p.I200T	0.888	superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397	tier1	-	-	46	0	0.00	23	4	14.81
