Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
MYO1A	0	genome.wustl.edu	37	12	57441190	57441190	+	Silent	SNP	C	C	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	12	57441190	57441190	C	T	SNP	MYO1A	ENST00000300119	human	ensembl	74_37	-1	known	silent	c.327	p.E109	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1A	HGNC	ENSG00000166866	tier1	-	-	21	0	0.00	19	7	26.92
RP1L1	0	genome.wustl.edu	37	8	10466863	10466863	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	8	10466863	10466863	C	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.4745	p.R1582Q	0.080	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	tier1	-	-	29	0	0.00	24	8	25.00
SLC16A6	0	genome.wustl.edu	37	17	66267497	66267497	+	Silent	SNP	G	G	A			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	17	66267497	66267497	G	A	SNP	SLC16A6	ENST00000327268	human	ensembl	74_37	-1	known	silent	c.804	p.V268	0.001	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A6	HGNC	ENSG00000108932	tier1	-	-	106	0	0.00	77	26	25.24
HRCT1	0	genome.wustl.edu	37	9	35906584	35906586	+	In_Frame_Del	DEL	CCA	CCA	-			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	9	35906584	35906586	CCA	-	DEL	HRCT1	ENST00000354323	human	ensembl	74_37	+1	known	in_frame_del	c.300_302	p.H104in_frame_del	0.016:0.009:0.003	NULL	NULL	-	no_errors	HRCT1	HGNC	ENSG00000196196	tier1			9	0	0.00	9	4	30.77
MAGEC1	0	genome.wustl.edu	37	X	140996612	140996612	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	X	140996612	140996612	C	T	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.3422	p.S1141F	0.004	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	tier1	-	-	105	0	0.00	66	23	25.84
SPINK5	0	genome.wustl.edu	37	5	147470592	147470592	+	RNA	SNP	G	G	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	5	147470592	147470592	G	T	SNP	SPINK5	ENST00000476608	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.844	-	-	-	no_errors	SPINK5	HGNC	ENSG00000133710	tier1	-	-	36	0	0.00	34	4	10.53
TNN	0	genome.wustl.edu	37	1	175049496	175049496	+	Missense_Mutation	SNP	A	A	G			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	1	175049496	175049496	A	G	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	missense	c.982	p.I328V	0.242	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	tier1	-	-	65	0	0.00	38	11	22.45
RBP2	0	genome.wustl.edu	37	3	139181030	139181030	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	3	139181030	139181030	C	T	SNP	RBP2	ENST00000232217	human	ensembl	74_37	-1	known	missense	c.176	p.R59H	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	RBP2	HGNC	ENSG00000114113	tier1	-	-	111	0	0.00	66	19	22.35
GAB3	0	genome.wustl.edu	37	X	153906377	153906378	+	RNA	INS	-	-	A			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	X	153906377	153906378	-	A	INS	GAB3	ENST00000496390	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004:0.006	-	-	-	no_errors	GAB3	HGNC	ENSG00000160219	tier1			30	0	0.00	36	6	14.29
CRY2	0	genome.wustl.edu	37	11	45882531	45882531	+	Missense_Mutation	SNP	G	G	C			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	11	45882531	45882531	G	C	SNP	CRY2	ENST00000443527	human	ensembl	74_37	+1	known	missense	c.663	p.E221D	1.000	superfamily_DNA_photolyase_N	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY2	HGNC	ENSG00000121671	tier1	-	-	43	0	0.00	16	10	38.46
TP53	0	genome.wustl.edu	37	17	7577559	7577559	+	Missense_Mutation	SNP	G	G	A			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	17	7577559	7577559	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.722	p.S241F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs28934573	-	54	0	0.00	34	8	19.05
BAZ2B	0	genome.wustl.edu	37	2	160317691	160317691	+	RNA	DEL	T	T	-			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	2	160317691	160317691	T	-	DEL	BAZ2B	ENST00000483316	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	BAZ2B	HGNC	ENSG00000123636	tier1			19	0	0.00	24	5	17.24
CIDEA	0	genome.wustl.edu	37	18	12254562	12254563	+	Frame_Shift_Ins	INS	-	-	CCGCGCACACACCCAT			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	18	12254562	12254563	-	CCGCGCACACACCCAT	INS	CIDEA	ENST00000522713	human	ensembl	74_37	+1	known	frame_shift_ins	c.180_181	p.H64fs	0.077:0.122	NULL	NULL	-	no_errors	CIDEA	HGNC	ENSG00000176194	tier1			NA	NA	NA	NA	NA	NA
CAMKMT	0	genome.wustl.edu	37	2	44619054	44619054	+	RNA	SNP	C	C	A			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	2	44619054	44619054	C	A	SNP	CAMKMT	ENST00000477623	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CAMKMT	HGNC	ENSG00000143919	tier1	-	-	48	0	0.00	41	4	8.89
PIPSL	0	genome.wustl.edu	37	10	95718381	95718382	+	RNA	INS	-	-	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	10	95718381	95718382	-	T	INS	PIPSL	ENST00000480546	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.065:0.064	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764	tier1			9	0	0.00	5	4	44.44
CASP8AP2	0	genome.wustl.edu	37	6	90572405	90572405	+	RNA	DEL	C	C	-			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	6	90572405	90572405	C	-	DEL	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	tier1			26	0	0.00	23	2	8.00
SELP	0	genome.wustl.edu	37	1	169562868	169562868	+	Missense_Mutation	SNP	C	C	A			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	1	169562868	169562868	C	A	SNP	SELP	ENST00000263686	human	ensembl	74_37	-1	known	missense	c.2382	p.L794F	0.939	NULL	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	tier1	-	-	60	0	0.00	45	10	18.18
PALM2-AKAP2	0	genome.wustl.edu	37	9	112899370	112899372	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	9	112899370	112899372	CAG	-	DEL	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	in_frame_del	c.1546_1548	p.Q519in_frame_del	0.823:0.886:0.022	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	tier1			48	0	0.00	30	3	9.09
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	tier1	rs121913279	-	41	0	0.00	36	8	18.18
SV2A	0	genome.wustl.edu	37	1	149879718	149879718	+	Missense_Mutation	SNP	G	G	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	1	149879718	149879718	G	T	SNP	SV2A	ENST00000369146	human	ensembl	74_37	-1	known	missense	c.1420	p.H474N	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2A	HGNC	ENSG00000159164	tier1	-	-	55	0	0.00	34	4	10.53
ENAM	0	genome.wustl.edu	37	4	71508541	71508541	+	Silent	SNP	T	T	C			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	4	71508541	71508541	T	C	SNP	ENAM	ENST00000396073	human	ensembl	74_37	+1	known	silent	c.1398	p.V466	0.064	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	tier1	-	-	92	0	0.00	55	28	33.73
PSMB3	0	genome.wustl.edu	37	17	36909562	36909562	+	Missense_Mutation	SNP	G	G	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	17	36909562	36909562	G	T	SNP	PSMB3	ENST00000225426	human	ensembl	74_37	+1	known	missense	c.163	p.G55W	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b	-	no_errors	PSMB3	HGNC	ENSG00000108294	tier1	-	-	51	0	0.00	42	4	8.70
TIRAP	0	genome.wustl.edu	37	11	126162666	126162666	+	Missense_Mutation	SNP	G	G	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	11	126162666	126162666	G	T	SNP	TIRAP	ENST00000392678	human	ensembl	74_37	+1	known	missense	c.362	p.R121L	0.997	pfam_TIR_dom,superfamily_TIR_dom,pirsf_Tol-interleuk_rcpt_adapt_Tirap,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,pirsf_Tol-interleuk_rcpt_adapt_Tirap,pfscan_TIR_dom	-	no_errors	TIRAP	HGNC	ENSG00000150455	tier1	-	-	48	0	0.00	35	4	10.26
PABPC1L	0	genome.wustl.edu	37	20	43581294	43581294	+	Frame_Shift_Del	DEL	A	A	-			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	20	43581294	43581294	A	-	DEL	PABPC1L	ENST00000372819	human	ensembl	74_37	+1	known	frame_shift_del	c.449	p.*150fs	0.024	NULL	pfam_PABP_HYD,superfamily_PABP_HYD,smart_PABP_HYD	-	no_errors	PABPC1L	HGNC	ENSG00000101104	tier1			38	0	0.00	23	3	11.54
IRF5	0	genome.wustl.edu	37	7	128587352	128587381	+	In_Frame_Del	DEL	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	7	128587352	128587381	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	DEL	IRF5	ENST00000357234	human	ensembl	74_37	+1	known	in_frame_del	c.550_579	p.PPTLRPPTLQ187in_frame_del	0.766:0.707:0.638:0.562:0.538:0.511:0.480:0.444:0.402:0.360:0.317:0.273:0.262:0.251:0.239:0.226:0.213:0.199:0.185:0.170:0.155:0.138:0.122:0.120:0.118:0.116:0.113:0.110:0.107:0.104	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF5	HGNC	ENSG00000128604	tier1			NA	NA	NA	NA	NA	NA
PCDHA3	0	genome.wustl.edu	37	5	140182562	140182562	+	Missense_Mutation	SNP	G	G	A			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	5	140182562	140182562	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.1780	p.V594M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	tier1	-	-	94	0	0.00	93	9	8.82
FLNC	0	genome.wustl.edu	37	7	128483309	128483309	+	Silent	SNP	C	C	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	7	128483309	128483309	C	T	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	silent	c.2577	p.I859	1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	tier1	-	-	67	0	0.00	29	12	29.27
RB1	0	genome.wustl.edu	37	13	49033844	49033844	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	13	49033844	49033844	C	T	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	missense	c.1981	p.R661W	1.000	pfam_RB_B,superfamily_Cyclin-like,smart_Cyclin-like	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1	rs137853294	-	73	0	0.00	78	16	17.02
ADAMTS19	0	genome.wustl.edu	37	5	129072866	129072866	+	Missense_Mutation	SNP	A	A	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	5	129072866	129072866	A	T	SNP	ADAMTS19	ENST00000274487	human	ensembl	74_37	+1	known	missense	c.3579	p.E1193D	1.000	pfam_PLAC,pfscan_PLAC	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	tier1	-	-	33	0	0.00	36	4	10.00
ENSG00000216089	0	genome.wustl.edu	37	4	160216906	160216906	+	RNA	SNP	T	T	C			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	4	160216906	160216906	T	C	SNP	ENSG00000216089	ENST00000401270	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AC105316.1	Clone_based_ensembl_gene	ENSG00000216089	tier1	rs10024829	-	36	0	0.00	35	6	14.63
WDR54	0	genome.wustl.edu	37	2	74648876	74648876	+	RNA	SNP	C	C	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	2	74648876	74648876	C	T	SNP	WDR54	ENST00000461531	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WDR54	HGNC	ENSG00000005448	tier1	-	-	145	0	0.00	130	40	23.53
DEAF1	0	genome.wustl.edu	37	11	688025	688025	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	11	688025	688025	C	T	SNP	DEAF1	ENST00000382409	human	ensembl	74_37	-1	known	missense	c.550	p.G184S	0.995	NULL	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_errors	DEAF1	HGNC	ENSG00000177030	tier1	-	-	54	0	0.00	37	9	19.57
COL1A1	0	genome.wustl.edu	37	17	48264176	48264176	+	Silent	SNP	G	G	A			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	17	48264176	48264176	G	A	SNP	COL1A1	ENST00000225964	human	ensembl	74_37	-1	known	silent	c.3639	p.G1213	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821	tier1	-	-	51	0	0.00	37	4	9.76
SLC6A20	0	genome.wustl.edu	37	3	45801483	45801483	+	Silent	SNP	G	G	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	3	45801483	45801483	G	T	SNP	SLC6A20	ENST00000358525	human	ensembl	74_37	-1	known	silent	c.1495	p.R499	0.437	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A20	HGNC	ENSG00000163817	tier1	-	-	59	0	0.00	39	4	9.30
C19orf25	0	genome.wustl.edu	37	19	1478412	1478417	+	RNA	DEL	TTTTGT	TTTTGT	-			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	TTTTGT	TTTTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	19	1478412	1478417	TTTTGT	-	DEL	C19orf25	ENST00000592605	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.425:0.418:0.410:0.402:0.395:0.387	-	-	-	no_errors	C19orf25	HGNC	ENSG00000119559	tier1			NA	NA	NA	NA	NA	NA
CPAMD8	0	genome.wustl.edu	37	19	17111251	17111251	+	Silent	SNP	C	C	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	19	17111251	17111251	C	T	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	silent	c.981	p.V327	1.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111	tier1	-	-	84	0	0.00	73	15	17.05
STARD9	0	genome.wustl.edu	37	15	43010667	43010667	+	Silent	SNP	G	G	T			TCGA-UE-A6QT-01A-12D-A32I-09	TCGA-UE-A6QT-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b7452ec-e6c4-4a85-bd88-241c78b79428	2b7c2a25-5412-4497-98e6-a1871fb5dc33	15	43010667	43010667	G	T	SNP	STARD9	ENST00000290607	human	ensembl	74_37	+1	known	silent	c.13797	p.L4599	0.995	pfam_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_Kinesin_motor_dom,pfam_START_lipid-bd_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_START_lipid-bd_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	STARD9	HGNC	ENSG00000159433	tier1	-	-	47	0	0.00	42	4	8.70
