Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ROCK1P1	0	genome.wustl.edu	37	18	117295	117295	+	RNA	SNP	C	C	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	18	117295	117295	C	A	SNP	ROCK1P1	ENST00000576266	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ROCK1P1	HGNC	ENSG00000263006	tier1	-	-	59	0	0.00	57	19	25.00
SMAD5-AS1	0	genome.wustl.edu	37	5	135469745	135469746	+	RNA	DEL	TT	TT	-			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	5	135469745	135469746	TT	-	DEL	SMAD5-AS1	ENST00000297163	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	SMAD5-AS1	HGNC	ENSG00000164621	tier1			58	0	0.00	32	3	8.57
ASTN2	0	genome.wustl.edu	37	9	119770532	119770532	+	Missense_Mutation	SNP	C	C	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	9	119770532	119770532	C	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.1430	p.S477I	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	tier1	-	-	74	0	0.00	50	9	15.00
YBX2	0	genome.wustl.edu	37	17	7193637	7193637	+	Frame_Shift_Del	DEL	G	G	-			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	17	7193637	7193637	G	-	DEL	YBX2	ENST00000007699	human	ensembl	74_37	-1	known	frame_shift_del	c.677	p.P226fs	0.892	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX2	HGNC	ENSG00000006047	tier1			148	0	0.00	144	21	12.73
GP1BA	0	genome.wustl.edu	37	17	4837184	4837184	+	Frame_Shift_Del	DEL	G	G	-			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	17	4837184	4837184	G	-	DEL	GP1BA	ENST00000329125	human	ensembl	74_37	+1	known	frame_shift_del	c.1285	p.E429fs	0.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP1BA	HGNC	ENSG00000185245	tier1			14	0	0.00	9	3	25.00
ANP32E	0	genome.wustl.edu	37	1	150199040	150199045	+	In_Frame_Del	DEL	TCCTCT	TCCTCT	-			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	TCCTCT	TCCTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	150199040	150199045	TCCTCT	-	DEL	ANP32E	ENST00000314136	human	ensembl	74_37	-1	known	in_frame_del	c.581_576	p.EE193in_frame_del	0.001:0.006:0.000:0.058:0.106:0.091	NULL	pfam_Leu-rich_rpt	-	no_errors	ANP32E	HGNC	ENSG00000143401	tier1			NA	NA	NA	NA	NA	NA
TRIM7	0	genome.wustl.edu	37	5	180622664	180622664	+	Silent	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	5	180622664	180622664	C	T	SNP	TRIM7	ENST00000274773	human	ensembl	74_37	-1	known	silent	c.1038	p.L346	1.000	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM7	HGNC	ENSG00000146054	tier1	-	-	101	0	0.00	215	28	11.52
SEPHS1	0	genome.wustl.edu	37	10	13365015	13365015	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	10	13365015	13365015	C	T	SNP	SEPHS1	ENST00000327347	human	ensembl	74_37	-1	known	missense	c.784	p.A262T	1.000	pfam_AIR_synth_C_dom,superfamily_AIR_synth_C_dom,pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS1	HGNC	ENSG00000086475	tier1	-	-	45	0	0.00	39	6	13.33
ENSG00000237281	0	genome.wustl.edu	37	2	219215889	219215890	+	RNA	INS	-	-	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	2	219215889	219215890	-	T	INS	ENSG00000237281	ENST00000411433	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.210:0.199	-	-	-	no_errors	AC021016.8	Clone_based_vega_gene	ENSG00000237281	tier1			65	0	0.00	48	6	11.11
STK38	0	genome.wustl.edu	37	6	36492187	36492187	+	Silent	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	6	36492187	36492187	C	T	SNP	STK38	ENST00000229812	human	ensembl	74_37	-1	known	silent	c.237	p.L79	0.997	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	STK38	HGNC	ENSG00000112079	tier1	-	-	76	0	0.00	48	20	29.41
TRIM7	0	genome.wustl.edu	37	5	180622493	180622493	+	Silent	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	5	180622493	180622493	C	T	SNP	TRIM7	ENST00000274773	human	ensembl	74_37	-1	known	silent	c.1209	p.V403	0.998	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM7	HGNC	ENSG00000146054	tier1	-	-	37	0	0.00	77	16	17.20
SLC5A5	0	genome.wustl.edu	37	19	17988575	17988575	+	Missense_Mutation	SNP	G	G	C			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	19	17988575	17988575	G	C	SNP	SLC5A5	ENST00000222248	human	ensembl	74_37	+1	known	missense	c.742	p.V248L	0.001	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641	tier1	-	-	59	0	0.00	40	10	20.00
OTOP3	0	genome.wustl.edu	37	17	72937678	72937678	+	Silent	SNP	A	A	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	17	72937678	72937678	A	G	SNP	OTOP3	ENST00000328801	human	ensembl	74_37	+1	known	silent	c.264	p.Q88	1.000	NULL	pfam_Otopetrin	-	no_errors	OTOP3	HGNC	ENSG00000182938	tier1	-	-	33	0	0.00	31	8	20.51
MAGEE2	0	genome.wustl.edu	37	X	75003967	75003967	+	Missense_Mutation	SNP	G	G	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	X	75003967	75003967	G	A	SNP	MAGEE2	ENST00000373359	human	ensembl	74_37	-1	known	missense	c.920	p.S307L	0.999	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	tier1	-	-	56	0	0.00	29	10	25.64
ROCK1P1	0	genome.wustl.edu	37	18	117194	117194	+	RNA	SNP	C	C	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	18	117194	117194	C	G	SNP	ROCK1P1	ENST00000576266	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ROCK1P1	HGNC	ENSG00000263006	tier1	-	-	88	0	0.00	71	20	21.98
SNHG12	0	genome.wustl.edu	37	1	28906964	28906964	+	RNA	SNP	C	C	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	28906964	28906964	C	G	SNP	SNHG12	ENST00000384584	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.812	-	-	-	no_errors	SNHG12	HGNC	ENSG00000197989	tier1	-	-	56	0	0.00	47	9	16.07
ZNF692	0	genome.wustl.edu	37	1	249150493	249150493	+	Missense_Mutation	SNP	G	G	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	249150493	249150493	G	T	SNP	ZNF692	ENST00000451251	human	ensembl	74_37	-1	known	missense	c.668	p.P223Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF692	HGNC	ENSG00000171163	tier1	-	-	44	0	0.00	22	4	15.38
LINC00910	0	genome.wustl.edu	37	17	41466210	41466210	+	RNA	SNP	T	T	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	17	41466210	41466210	T	G	SNP	LINC00910	ENST00000586231	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	LINC00910	HGNC	ENSG00000188825	tier1	rs4792984	-	15	0	0.00	31	8	20.51
GPA33	0	genome.wustl.edu	37	1	167025040	167025040	+	Silent	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	167025040	167025040	C	T	SNP	GPA33	ENST00000367868	human	ensembl	74_37	-1	known	silent	c.618	p.S206	0.003	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	GPA33	HGNC	ENSG00000143167	tier1	rs149640714	-	57	0	0.00	60	15	20.00
FAM47A	0	genome.wustl.edu	37	X	34148570	34148570	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	X	34148570	34148570	C	T	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	missense	c.1826	p.R609H	0.000	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	tier1	-	-	59	0	0.00	63	7	10.00
UNC5D	0	genome.wustl.edu	37	8	35608292	35608292	+	Missense_Mutation	SNP	G	G	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	8	35608292	35608292	G	T	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.2128	p.V710F	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687	tier1	-	-	54	0	0.00	45	4	8.16
THRA	0	genome.wustl.edu	37	17	38240109	38240109	+	Nonsense_Mutation	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	17	38240109	38240109	C	T	SNP	THRA	ENST00000264637	human	ensembl	74_37	+1	known	nonsense	c.244	p.Q82*	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRA	HGNC	ENSG00000126351	tier1	-	-	40	0	0.00	29	18	38.30
ENSG00000259859	0	genome.wustl.edu	37	16	64770704	64770705	+	RNA	INS	-	-	CCAGTGATGGTCACCT			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	16	64770704	64770705	-	CCAGTGATGGTCACCT	INS	ENSG00000259859	ENST00000564293	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009:0.006	-	-	-	no_errors	RP11-439I14.2	Clone_based_vega_gene	ENSG00000259859	tier1			NA	NA	NA	NA	NA	NA
RIN2	0	genome.wustl.edu	37	20	19915798	19915798	+	Missense_Mutation	SNP	C	C	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	20	19915798	19915798	C	G	SNP	RIN2	ENST00000255006	human	ensembl	74_37	+1	known	missense	c.260	p.T87R	1.000	NULL	pfam_VPS9,pfam_Ras-assoc,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN2	HGNC	ENSG00000132669	tier1	-	-	82	0	0.00	64	6	8.57
C1orf87	0	genome.wustl.edu	37	1	60491105	60491105	+	Silent	SNP	G	G	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	60491105	60491105	G	A	SNP	C1orf87	ENST00000371201	human	ensembl	74_37	-1	known	silent	c.1095	p.N365	0.928	NULL	NULL	-	no_errors	C1orf87	HGNC	ENSG00000162598	tier1	rs147855127	GMAF=0.0005	52	0	0.00	29	26	47.27
FAM174B	0	genome.wustl.edu	37	15	93198679	93198684	+	In_Frame_Del	DEL	TGGAGC	TGGAGC	-			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	TGGAGC	TGGAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	15	93198679	93198684	TGGAGC	-	DEL	FAM174B	ENST00000327355	human	ensembl	74_37	-1	known	in_frame_del	c.211_206	p.SS69in_frame_del	0.997:0.996:0.995:0.994:0.994:0.995	pfam_DUF1180	pfam_DUF1180	-	no_errors	FAM174B	HGNC	ENSG00000185442	tier1			NA	NA	NA	NA	NA	NA
FMN2	0	genome.wustl.edu	37	1	240255905	240255905	+	Missense_Mutation	SNP	G	G	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	240255905	240255905	G	T	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.496	p.A166S	0.029	NULL	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	tier1	-	-	104	0	0.00	130	19	12.75
TRPM6	0	genome.wustl.edu	37	9	77343190	77343190	+	Missense_Mutation	SNP	T	T	C			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	9	77343190	77343190	T	C	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.5912	p.H1971R	1.000	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	tier1	-	-	90	0	0.00	54	22	28.95
EFCAB2	0	genome.wustl.edu	37	1	245133623	245133624	+	Frame_Shift_Ins	INS	-	-	CCTCC			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	245133623	245133624	-	CCTCC	INS	EFCAB2	ENST00000366522	human	ensembl	74_37	+1	known	frame_shift_ins	c.199_200	p.R69fs	0.000:0.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB2	HGNC	ENSG00000203666	tier1			NA	NA	NA	NA	NA	NA
RARB	0	genome.wustl.edu	37	3	25622051	25622051	+	Silent	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	3	25622051	25622051	C	T	SNP	RARB	ENST00000404969	human	ensembl	74_37	+1	known	silent	c.645	p.D215	0.997	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Retinoic_acid_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	tier1	-	-	71	0	0.00	73	11	13.10
HEATR2	0	genome.wustl.edu	37	7	796579	796579	+	Missense_Mutation	SNP	C	C	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	7	796579	796579	C	A	SNP	HEATR2	ENST00000297440	human	ensembl	74_37	+1	known	missense	c.1418	p.A473E	0.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR2	HGNC	ENSG00000164818	tier1	-	-	17	0	0.00	13	5	27.78
MALAT1	0	genome.wustl.edu	37	11	65271779	65271780	+	RNA	INS	-	-	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	11	65271779	65271780	-	T	INS	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994:0.994	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	tier1			22	0	0.00	29	4	12.12
ENSG00000263272	0	genome.wustl.edu	37	17	5336015	5336016	+	RNA	INS	-	-	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	17	5336015	5336016	-	A	INS	ENSG00000263272	ENST00000575890	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.046:0.076	-	-	-	no_errors	CTC-524C5.2	Clone_based_vega_gene	ENSG00000263272	tier1			20	0	0.00	23	3	11.54
FBN3	0	genome.wustl.edu	37	19	8146270	8146270	+	Silent	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	19	8146270	8146270	C	T	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	silent	c.7308	p.L2436	0.997	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	tier1	-	-	58	0	0.00	55	9	14.06
NTSR1	0	genome.wustl.edu	37	20	61340977	61340977	+	Missense_Mutation	SNP	G	G	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	20	61340977	61340977	G	T	SNP	NTSR1	ENST00000370501	human	ensembl	74_37	+1	known	missense	c.418	p.G140C	0.820	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NT_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NT1_rcpt,prints_GPCR_Rhodpsn,prints_NT_rcpt	-	no_errors	NTSR1	HGNC	ENSG00000101188	tier1	-	-	29	0	0.00	32	12	27.27
SLC8A3	0	genome.wustl.edu	37	14	70512750	70512750	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	14	70512750	70512750	C	T	SNP	SLC8A3	ENST00000381269	human	ensembl	74_37	-1	known	missense	c.2698	p.A900T	0.994	pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678	tier1	-	-	32	0	0.00	32	12	27.27
TOLLIP	0	genome.wustl.edu	37	11	1311571	1311571	+	Silent	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	11	1311571	1311571	C	T	SNP	TOLLIP	ENST00000317204	human	ensembl	74_37	-1	known	silent	c.252	p.A84	0.001	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_CUE,pfam_C2_dom,superfamily_C2_dom,superfamily_UBA-like,smart_C2_dom,smart_CUE,pfscan_CUE	-	no_errors	TOLLIP	HGNC	ENSG00000078902	tier1	-	-	68	0	0.00	33	5	13.16
RTN4	0	genome.wustl.edu	37	2	55254362	55254363	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	2	55254362	55254363	CT	-	DEL	RTN4	ENST00000337526	human	ensembl	74_37	-1	known	frame_shift_del	c.873_872	p.E291fs	0.082:0.235	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310	tier1			61	0	0.00	56	13	18.84
UNC5B	0	genome.wustl.edu	37	10	73048357	73048357	+	Missense_Mutation	SNP	T	T	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	10	73048357	73048357	T	A	SNP	UNC5B	ENST00000335350	human	ensembl	74_37	+1	known	missense	c.934	p.S312T	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Ig_I-set,pfam_Death_domain,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5B	HGNC	ENSG00000107731	tier1	-	-	22	0	0.00	3	10	76.92
NOV	0	genome.wustl.edu	37	8	120431473	120431473	+	Missense_Mutation	SNP	T	T	C			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	8	120431473	120431473	T	C	SNP	NOV	ENST00000259526	human	ensembl	74_37	+1	known	missense	c.665	p.M222T	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_Cys_knot,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	NOV	HGNC	ENSG00000136999	tier1	-	-	56	0	0.00	41	7	14.58
BTN1A1	0	genome.wustl.edu	37	6	26509300	26509300	+	Missense_Mutation	SNP	G	G	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	6	26509300	26509300	G	T	SNP	BTN1A1	ENST00000244513	human	ensembl	74_37	+1	known	missense	c.1479	p.K493N	0.851	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557	tier1	-	-	49	0	0.00	38	4	9.52
ZNF418	0	genome.wustl.edu	37	19	58438975	58438975	+	Missense_Mutation	SNP	A	A	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	19	58438975	58438975	A	G	SNP	ZNF418	ENST00000396147	human	ensembl	74_37	-1	known	missense	c.574	p.C192R	0.582	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF418	HGNC	ENSG00000196724	tier1	-	-	63	0	0.00	35	17	32.69
MRPL4	0	genome.wustl.edu	37	19	10370387	10370387	+	Silent	SNP	A	A	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	19	10370387	10370387	A	T	SNP	MRPL4	ENST00000253099	human	ensembl	74_37	+1	known	silent	c.834	p.S278	0.000	NULL	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom,tigrfam_Ribosomal_L4/L1e_bac-type	-	no_errors	MRPL4	HGNC	ENSG00000105364	tier1	-	-	93	0	0.00	90	9	9.00
TRAK1	0	genome.wustl.edu	37	3	42251577	42251578	+	In_Frame_Ins	INS	-	-	GGAGGA			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	3	42251577	42251578	-	GGAGGA	INS	TRAK1	ENST00000341421	human	ensembl	74_37	+1	known	in_frame_ins	c.1889_1890	p.634in_frame_insEE	0.010:0.044	NULL	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606	tier1			NA	NA	NA	NA	NA	NA
WDR24	0	genome.wustl.edu	37	16	737641	737641	+	Missense_Mutation	SNP	G	G	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	16	737641	737641	G	A	SNP	WDR24	ENST00000248142	human	ensembl	74_37	-1	known	missense	c.970	p.R324W	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580	tier1	-	-	40	0	0.00	30	5	14.29
MYO15A	0	genome.wustl.edu	37	17	18042602	18042602	+	RNA	SNP	G	G	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	17	18042602	18042602	G	A	SNP	MYO15A	ENST00000412324	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	MYO15A	HGNC	ENSG00000091536	tier1	-	-	25	0	0.00	23	25	52.08
LGR6	0	genome.wustl.edu	37	1	202183341	202183341	+	Missense_Mutation	SNP	G	G	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	202183341	202183341	G	A	SNP	LGR6	ENST00000439764	human	ensembl	74_37	+1	known	missense	c.59	p.G20E	0.001	NULL	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067	tier1	-	-	77	0	0.00	44	26	37.14
EP400NL	0	genome.wustl.edu	37	12	132603415	132603416	+	RNA	INS	-	-	GGCAGA			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	12	132603415	132603416	-	GGCAGA	INS	EP400NL	ENST00000475841	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.945:0.951	-	-	-	no_errors	EP400NL	HGNC	ENSG00000185684	tier1			NA	NA	NA	NA	NA	NA
FLT4	0	genome.wustl.edu	37	5	180048109	180048109	+	Missense_Mutation	SNP	A	A	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	5	180048109	180048109	A	T	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	missense	c.2164	p.S722T	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280	tier1	-	-	47	0	0.00	101	10	9.01
PHLPP1	0	genome.wustl.edu	37	18	60630681	60630681	+	Missense_Mutation	SNP	C	C	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	18	60630681	60630681	C	G	SNP	PHLPP1	ENST00000262719	human	ensembl	74_37	+1	known	missense	c.3536	p.T1179S	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913	tier1	-	-	93	0	0.00	81	14	14.74
DNAH9	0	genome.wustl.edu	37	17	11603120	11603120	+	Missense_Mutation	SNP	C	C	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	17	11603120	11603120	C	A	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.4945	p.P1649T	0.975	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	tier1	-	-	58	0	0.00	63	49	43.75
LRCH2	0	genome.wustl.edu	37	X	114357669	114357669	+	Nonsense_Mutation	SNP	G	G	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	X	114357669	114357669	G	A	SNP	LRCH2	ENST00000317135	human	ensembl	74_37	-1	known	nonsense	c.1936	p.R646*	1.000	superfamily_CH-domain,pfscan_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224	tier1	-	-	57	0	0.00	44	4	8.33
CAMKK1	0	genome.wustl.edu	37	17	3769248	3769248	+	Missense_Mutation	SNP	C	C	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	17	3769248	3769248	C	A	SNP	CAMKK1	ENST00000381771	human	ensembl	74_37	-1	known	missense	c.1513	p.A505S	0.014	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKK1	HGNC	ENSG00000004660	tier1	-	-	39	0	0.00	43	17	28.33
LOC730102	0	genome.wustl.edu	37	1	177977233	177977233	+	RNA	SNP	G	G	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	177977233	177977233	G	T	SNP	LOC730102	ENST00000476232	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.962	-	-	-	no_errors	RP11-568K15.1	Clone_based_vega_gene	ENSG00000242193	tier1	-	-	107	0	0.00	82	36	30.51
ENSG00000267462	0	genome.wustl.edu	37	18	57678376	57678376	+	RNA	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	18	57678376	57678376	C	T	SNP	ENSG00000267462	ENST00000585691	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	RP11-866E20.3	Clone_based_vega_gene	ENSG00000267462	tier1	-	-	34	0	0.00	38	9	19.15
RASGRF2	0	genome.wustl.edu	37	5	80503117	80503117	+	Missense_Mutation	SNP	C	C	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	5	80503117	80503117	C	A	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	missense	c.3020	p.A1007E	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319	tier1	-	-	47	0	0.00	43	4	8.51
FGFR4	0	genome.wustl.edu	37	5	176520502	176520502	+	Nonsense_Mutation	SNP	C	C	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	5	176520502	176520502	C	A	SNP	FGFR4	ENST00000393648	human	ensembl	74_37	+1	novel	nonsense	c.1193	p.S398*	0.997	pirsf_FGF_rcpt_fam,superfamily_Kinase-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR4	HGNC	ENSG00000160867	tier1	-	-	37	0	0.00	45	5	10.00
SLK	0	genome.wustl.edu	37	10	105762686	105762686	+	Missense_Mutation	SNP	T	T	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	10	105762686	105762686	T	G	SNP	SLK	ENST00000369755	human	ensembl	74_37	+1	known	missense	c.1750	p.L584V	0.001	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_dom	-	no_errors	SLK	HGNC	ENSG00000065613	tier1	-	-	35	0	0.00	40	9	18.37
GRHPR	0	genome.wustl.edu	37	9	37424844	37424844	+	Missense_Mutation	SNP	G	G	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	9	37424844	37424844	G	T	SNP	GRHPR	ENST00000318158	human	ensembl	74_37	+1	known	missense	c.86	p.C29F	1.000	pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd	-	no_errors	GRHPR	HGNC	ENSG00000137106	tier1	-	-	66	0	0.00	44	15	25.42
HIPK1	0	genome.wustl.edu	37	1	114499908	114499908	+	Missense_Mutation	SNP	G	G	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	114499908	114499908	G	T	SNP	HIPK1	ENST00000369558	human	ensembl	74_37	+1	known	missense	c.1755	p.Q585H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK1	HGNC	ENSG00000163349	tier1	-	-	37	0	0.00	41	4	8.89
ZNF10	0	genome.wustl.edu	37	12	133733335	133733335	+	Silent	SNP	G	G	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	12	133733335	133733335	G	A	SNP	ZNF10	ENST00000248211	human	ensembl	74_37	+1	known	silent	c.1503	p.K501	0.085	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF10	HGNC	ENSG00000256223	tier1	-	-	46	0	0.00	39	8	16.67
ENSG00000207207	0	genome.wustl.edu	37	2	85661740	85661741	+	RNA	INS	-	-	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	2	85661740	85661741	-	A	INS	ENSG00000207207	ENST00000384478	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.003:0.006	-	-	-	no_errors	Y_RNA	RFAM	ENSG00000207207	tier1			8	0	0.00	21	3	12.50
DST	0	genome.wustl.edu	37	6	56358840	56358840	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	6	56358840	56358840	C	T	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.20269	p.E6757K	1.000	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914	tier1	-	-	42	0	0.00	31	19	38.00
PTPRN	0	genome.wustl.edu	37	2	220167489	220167489	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	2	220167489	220167489	C	T	SNP	PTPRN	ENST00000295718	human	ensembl	74_37	-1	known	missense	c.448	p.A150T	0.011	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN	HGNC	ENSG00000054356	tier1	rs201131601	GMAF=0.0005	68	0	0.00	47	6	11.32
LETM2	0	genome.wustl.edu	37	8	38264976	38264976	+	Missense_Mutation	SNP	G	G	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	8	38264976	38264976	G	A	SNP	LETM2	ENST00000379957	human	ensembl	74_37	+1	known	missense	c.1408	p.E470K	1.000	NULL	pfam_LETM1	-	no_errors	LETM2	HGNC	ENSG00000165046	tier1	-	-	64	0	0.00	70	15	17.65
LOC730102	0	genome.wustl.edu	37	1	177977224	177977224	+	RNA	SNP	G	G	C			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	177977224	177977224	G	C	SNP	LOC730102	ENST00000476232	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-568K15.1	Clone_based_vega_gene	ENSG00000242193	tier1	-	-	116	0	0.00	85	36	29.75
MAP1B	0	genome.wustl.edu	37	5	71495628	71495628	+	Nonsense_Mutation	SNP	C	C	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	5	71495628	71495628	C	A	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	nonsense	c.6446	p.S2149*	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	tier1	-	-	33	0	0.00	23	4	14.81
LAYN	0	genome.wustl.edu	37	11	111425989	111425989	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	11	111425989	111425989	C	T	SNP	LAYN	ENST00000375615	human	ensembl	74_37	+1	known	missense	c.656	p.A219V	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	LAYN	HGNC	ENSG00000204381	tier1	-	-	40	0	0.00	45	4	8.16
ADAM22	0	genome.wustl.edu	37	7	87746112	87746112	+	Missense_Mutation	SNP	T	T	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	7	87746112	87746112	T	G	SNP	ADAM22	ENST00000265727	human	ensembl	74_37	+1	known	missense	c.590	p.L197W	1.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM22	HGNC	ENSG00000008277	tier1	-	-	38	0	0.00	32	5	13.51
RYR3	0	genome.wustl.edu	37	15	34015055	34015055	+	Missense_Mutation	SNP	C	C	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	15	34015055	34015055	C	G	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.6759	p.N2253K	0.994	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	tier1	-	-	42	0	0.00	50	8	13.79
FAM189A2	0	genome.wustl.edu	37	9	72003271	72003271	+	Missense_Mutation	SNP	G	G	C			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	9	72003271	72003271	G	C	SNP	FAM189A2	ENST00000257515	human	ensembl	74_37	+1	known	missense	c.1054	p.D352H	1.000	NULL	pfam_CD20-like	-	no_errors	FAM189A2	HGNC	ENSG00000135063	tier1	-	-	40	0	0.00	51	9	14.75
ENSG00000237031	0	genome.wustl.edu	37	2	80831148	80831148	+	RNA	SNP	T	T	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	2	80831148	80831148	T	A	SNP	ENSG00000237031	ENST00000595478	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC008067.2	Clone_based_vega_gene	ENSG00000237031	tier1	-	-	49	0	0.00	43	8	15.69
MATN3	0	genome.wustl.edu	37	2	20196958	20196958	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	2	20196958	20196958	C	T	SNP	MATN3	ENST00000407540	human	ensembl	74_37	-1	known	missense	c.1231	p.A411T	0.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd_dom,smart_VWF_A,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN3	HGNC	ENSG00000132031	tier1	-	-	22	0	0.00	22	4	15.38
FUT2	0	genome.wustl.edu	37	19	49207147	49207147	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	19	49207147	49207147	C	T	SNP	FUT2	ENST00000391876	human	ensembl	74_37	+1	known	missense	c.934	p.P312S	0.993	pfam_Glyco_trans_11	pfam_Glyco_trans_11	-	no_errors	FUT2	HGNC	ENSG00000176920	tier1	-	-	57	0	0.00	44	7	13.73
NFASC	0	genome.wustl.edu	37	1	204966566	204966566	+	RNA	SNP	T	T	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	204966566	204966566	T	A	SNP	NFASC	ENST00000492085	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.169	-	-	-	no_errors	NFASC	HGNC	ENSG00000163531	tier1	-	-	56	0	0.00	41	8	15.69
CYP2B7P1	0	genome.wustl.edu	37	19	41450278	41450278	+	RNA	SNP	G	G	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	19	41450278	41450278	G	A	SNP	CYP2B7P1	ENST00000599198	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.231	-	-	-	no_errors	CYP2B7P1	HGNC	ENSG00000256612	tier1	-	-	51	0	0.00	42	13	23.64
FAM13A	0	genome.wustl.edu	37	4	89772181	89772181	+	Silent	SNP	A	A	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	4	89772181	89772181	A	G	SNP	FAM13A	ENST00000264344	human	ensembl	74_37	-1	known	silent	c.997	p.L333	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640	tier1	-	-	64	0	0.00	37	15	28.85
OR1S1	0	genome.wustl.edu	37	11	57982428	57982428	+	Missense_Mutation	SNP	C	C	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	11	57982428	57982428	C	A	SNP	OR1S1	ENST00000309433	human	ensembl	74_37	+1	known	missense	c.212	p.P71H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1S1	HGNC	ENSG00000172774	tier1	-	-	85	0	0.00	107	16	13.01
CCDC180	0	genome.wustl.edu	37	9	100105638	100105638	+	Missense_Mutation	SNP	A	A	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	9	100105638	100105638	A	G	SNP	CCDC180	ENST00000375202	human	ensembl	74_37	+1	known	missense	c.2423	p.E808G	0.513	NULL	NULL	-	no_errors	CCDC180	HGNC	ENSG00000197816	tier1	rs146215337	-	58	0	0.00	39	11	22.00
ACAD10	0	genome.wustl.edu	37	12	112167713	112167713	+	Silent	SNP	C	C	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	12	112167713	112167713	C	G	SNP	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	silent	c.1440	p.L480	0.000	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271	tier1	-	-	47	0	0.00	46	9	16.36
FBLN2	0	genome.wustl.edu	37	3	13613122	13613122	+	Missense_Mutation	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	3	13613122	13613122	C	T	SNP	FBLN2	ENST00000404922	human	ensembl	74_37	+1	known	missense	c.1267	p.P423S	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_EG-like_dom,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd_dom,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	tier1	-	-	32	0	0.00	26	4	13.33
RBM33	0	genome.wustl.edu	37	7	155457900	155457900	+	Silent	SNP	C	C	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	7	155457900	155457900	C	T	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	silent	c.75	p.G25	0.996	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863	tier1	-	-	47	0	0.00	25	3	10.71
GRM4	0	genome.wustl.edu	37	6	34003463	34003463	+	Silent	SNP	G	G	C			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	6	34003463	34003463	G	C	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	silent	c.2424	p.T808	0.996	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493	tier1	-	-	50	0	0.00	58	17	22.37
PTPRT	0	genome.wustl.edu	37	20	41306780	41306780	+	Silent	SNP	A	A	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	20	41306780	41306780	A	T	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	silent	c.879	p.A293	0.881	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	tier1	-	-	56	0	0.00	85	10	10.53
SNCG	0	genome.wustl.edu	37	10	88719349	88719349	+	RNA	SNP	C	C	G			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	10	88719349	88719349	C	G	SNP	SNCG	ENST00000483064	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SNCG	HGNC	ENSG00000173267	tier1	-	-	33	0	0.00	41	10	19.61
TESK2	0	genome.wustl.edu	37	1	45809610	45809610	+	RNA	DEL	A	A	-			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	1	45809610	45809610	A	-	DEL	TESK2	ENST00000486676	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.794	-	-	-	no_errors	TESK2	HGNC	ENSG00000070759	tier1			54	0	0.00	41	9	18.00
NPM2	0	genome.wustl.edu	37	8	21891682	21891682	+	Missense_Mutation	SNP	G	G	C			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	8	21891682	21891682	G	C	SNP	NPM2	ENST00000397940	human	ensembl	74_37	+1	known	missense	c.427	p.E143Q	0.458	NULL	superfamily_Nucleoplasmin_core_dom	-	no_errors	NPM2	HGNC	ENSG00000158806	tier1	-	-	41	0	0.00	39	13	25.00
GSN	0	genome.wustl.edu	37	9	124074856	124074857	+	RNA	INS	-	-	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	9	124074856	124074857	-	A	INS	GSN	ENST00000485767	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.000	-	-	-	no_errors	GSN	HGNC	ENSG00000148180	tier1			18	0	0.00	15	4	21.05
NPM2	0	genome.wustl.edu	37	8	21891645	21891645	+	Missense_Mutation	SNP	G	G	C			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	8	21891645	21891645	G	C	SNP	NPM2	ENST00000397940	human	ensembl	74_37	+1	known	missense	c.390	p.E130D	0.000	NULL	superfamily_Nucleoplasmin_core_dom	-	no_errors	NPM2	HGNC	ENSG00000158806	tier1	-	-	37	0	0.00	37	8	17.39
FBXL22	0	genome.wustl.edu	37	15	63893606	63893606	+	Silent	SNP	G	G	A			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	15	63893606	63893606	G	A	SNP	FBXL22	ENST00000360587	human	ensembl	74_37	+1	known	silent	c.465	p.E155	0.000	NULL	superfamily_F-box_dom	-	no_errors	FBXL22	HGNC	ENSG00000197361	tier1	-	-	40	0	0.00	37	8	17.78
CELSR1	0	genome.wustl.edu	37	22	46760514	46760514	+	Missense_Mutation	SNP	G	G	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	22	46760514	46760514	G	T	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.8674	p.L2892M	1.000	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	tier1	-	-	53	0	0.00	37	4	9.76
ERCC8	0	genome.wustl.edu	37	5	60199496	60199496	+	Missense_Mutation	SNP	A	A	T			TCGA-UE-A6QU-01A-12D-A32I-09	TCGA-UE-A6QU-10B-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8955375b-e2e4-42f6-a96f-0e14ffb8fd4b	a37b1846-7265-4f3a-bc22-c1dd8350e95a	5	60199496	60199496	A	T	SNP	ERCC8	ENST00000265038	human	ensembl	74_37	-1	known	missense	c.529	p.S177T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ERCC8	HGNC	ENSG00000049167	tier1	-	-	72	0	0.00	49	10	16.95
