Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CCDC13	0	genome.wustl.edu	37	3	42799753	42799753	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	3	42799753	42799753	G	T	SNP	CCDC13	ENST00000310232	human	ensembl	74_37	-1	known	missense	c.85	p.Q29K	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC13	HGNC	ENSG00000244607	tier1	-	-	60	0	0.00	41	4	8.89
CDH26	0	genome.wustl.edu	37	20	58577889	58577889	+	Missense_Mutation	SNP	C	C	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	20	58577889	58577889	C	G	SNP	CDH26	ENST00000348616	human	ensembl	74_37	+1	known	missense	c.2188	p.P730A	0.008	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	tier1	-	-	78	0	0.00	66	16	19.28
MADD	0	genome.wustl.edu	37	11	47330211	47330211	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	11	47330211	47330211	G	T	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	missense	c.3829	p.D1277Y	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	tier1	-	-	41	0	0.00	23	3	11.54
ESRP1	0	genome.wustl.edu	37	8	95677276	95677276	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	8	95677276	95677276	C	T	SNP	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	missense	c.877	p.R293W	1.000	smart_RRM_dom,pfscan_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413	tier1	-	-	68	0	0.00	37	10	21.28
ROR2	0	genome.wustl.edu	37	9	94484841	94484841	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	9	94484841	94484841	C	T	SNP	ROR2	ENST00000375715	human	ensembl	74_37	-1	putative	missense	c.1942	p.G648R	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROR2	HGNC	ENSG00000169071	tier1	-	-	21	0	0.00	21	6	22.22
MYL1	0	genome.wustl.edu	37	2	211179643	211179643	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	2	211179643	211179643	C	T	SNP	MYL1	ENST00000352451	human	ensembl	74_37	-1	known	missense	c.124	p.A42T	0.993	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL1	HGNC	ENSG00000168530	tier1	-	-	61	0	0.00	59	7	10.61
EPB41L1	0	genome.wustl.edu	37	20	34761735	34761735	+	Silent	SNP	G	G	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	20	34761735	34761735	G	A	SNP	EPB41L1	ENST00000338074	human	ensembl	74_37	+1	known	silent	c.36	p.K12	1.000	pirsf_Band_41_protein	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB_dom,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L1	HGNC	ENSG00000088367	tier1	-	-	44	0	0.00	31	14	31.11
PRIM2	0	genome.wustl.edu	37	6	57512787	57512788	+	RNA	INS	-	-	CACCAAGGC			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	6	57512787	57512788	-	CACCAAGGC	INS	PRIM2	ENST00000389488	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.057:0.034	-	-	-	no_errors	PRIM2	HGNC	ENSG00000146143	tier1			NA	NA	NA	NA	NA	NA
ODF3L1	0	genome.wustl.edu	37	15	76018406	76018406	+	Silent	SNP	G	G	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	15	76018406	76018406	G	T	SNP	ODF3L1	ENST00000332145	human	ensembl	74_37	+1	known	silent	c.237	p.V79	0.000	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3L1	HGNC	ENSG00000182950	tier1	-	-	36	0	0.00	23	4	14.81
PGM3	0	genome.wustl.edu	37	6	83885740	83885740	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	6	83885740	83885740	G	T	SNP	PGM3	ENST00000513973	human	ensembl	74_37	-1	known	missense	c.1069	p.H357N	1.000	superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	-	no_errors	PGM3	HGNC	ENSG00000013375	tier1	-	-	59	0	0.00	37	5	11.90
MAGED1	0	genome.wustl.edu	37	X	51638173	51638173	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	X	51638173	51638173	G	A	SNP	MAGED1	ENST00000375695	human	ensembl	74_37	+1	known	missense	c.238	p.A80T	0.950	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	tier1	-	-	61	0	0.00	23	30	56.60
NCKIPSD	0	genome.wustl.edu	37	3	48701489	48701489	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	3	48701489	48701489	G	T	SNP	NCKIPSD	ENST00000341520	human	ensembl	74_37	-1	known	missense	c.2044	p.P682T	0.098	NULL	pfam_DUF2013,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NCKIPSD	HGNC	ENSG00000213672	tier1	-	-	179	0	0.00	119	26	17.93
ORC3	0	genome.wustl.edu	37	6	88375493	88375493	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	6	88375493	88375493	G	T	SNP	ORC3	ENST00000257789	human	ensembl	74_37	+1	known	missense	c.1975	p.A659S	1.000	NULL	pfam_ORC3	-	no_errors	ORC3	HGNC	ENSG00000135336	tier1	-	-	50	0	0.00	30	3	9.09
MYADML	0	genome.wustl.edu	37	2	33952141	33952141	+	RNA	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	2	33952141	33952141	C	T	SNP	MYADML	ENST00000474610	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MYADML	HGNC	ENSG00000239649	tier1	-	-	61	0	0.00	49	20	28.99
LOC100129534	0	genome.wustl.edu	37	1	2282770	2282770	+	RNA	DEL	G	G	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	1	2282770	2282770	G	-	DEL	LOC100129534	ENST00000602865	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	RP4-740C4.6	Clone_based_vega_gene	ENSG00000269896	tier1			42	0	0.00	9	2	18.18
ATAD3C	0	genome.wustl.edu	37	1	1387815	1387815	+	Splice_Site	SNP	G	G	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	1	1387815	1387815	G	A	SNP	ATAD3C	ENST00000378785	human	ensembl	74_37	+1	known	splice_site	c.222+1	e3+1	1.000	-	-	-	no_errors	ATAD3C	HGNC	ENSG00000215915	tier1	-	-	112	0	0.00	25	36	59.02
DMD	0	genome.wustl.edu	37	X	33229530	33229530	+	RNA	SNP	C	C	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	X	33229530	33229530	C	G	SNP	DMD	ENST00000463609	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.902	-	-	-	no_errors	DMD	HGNC	ENSG00000198947	tier1	-	-	71	0	0.00	57	53	48.18
RAI1	0	genome.wustl.edu	37	17	17697974	17697974	+	Missense_Mutation	SNP	C	C	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	17	17697974	17697974	C	G	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.1712	p.S571C	1.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557	tier1	-	-	80	0	0.00	14	16	53.33
UBXN4	0	genome.wustl.edu	37	2	136530072	136530072	+	Missense_Mutation	SNP	A	A	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	2	136530072	136530072	A	G	SNP	UBXN4	ENST00000272638	human	ensembl	74_37	+1	known	missense	c.905	p.Q302R	1.000	NULL	pfam_UBX,superfamily_Thioredoxin-like_fold,smart_UBX,pfscan_UBX	-	no_errors	UBXN4	HGNC	ENSG00000144224	tier1	-	-	61	0	0.00	57	41	41.84
FILIP1	0	genome.wustl.edu	37	6	76023331	76023331	+	Silent	SNP	A	A	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	6	76023331	76023331	A	G	SNP	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	silent	c.2217	p.D739	0.956	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	tier1	-	-	24	0	0.00	9	10	52.63
MYO5C	0	genome.wustl.edu	37	15	52515824	52515824	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	15	52515824	52515824	G	A	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	missense	c.3544	p.H1182Y	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	tier1	-	-	47	0	0.00	29	23	44.23
LIN37	0	genome.wustl.edu	37	19	36244131	36244131	+	Missense_Mutation	SNP	C	C	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	19	36244131	36244131	C	G	SNP	LIN37	ENST00000301159	human	ensembl	74_37	+1	known	missense	c.421	p.P141A	0.901	NULL	NULL	-	no_errors	LIN37	HGNC	ENSG00000267796	tier1	-	-	58	0	0.00	68	22	24.44
SPANXD	0	genome.wustl.edu	37	X	140786506	140786506	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	X	140786506	140786506	G	T	SNP	SPANXD	ENST00000370515	human	ensembl	74_37	-1	known	missense	c.57	p.N19K	0.016	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXD	HGNC	ENSG00000196406	tier1	-	-	196	1	0.51	45	74	62.18
CHD5	0	genome.wustl.edu	37	1	6206323	6206323	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	1	6206323	6206323	C	T	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	missense	c.1751	p.R584H	1.000	superfamily_Chromodomain-like	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	tier1	rs141210110	-	35	0	0.00	17	9	34.62
FOXN3	0	genome.wustl.edu	37	14	89629149	89629151	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	14	89629149	89629151	GAG	-	DEL	FOXN3	ENST00000261302	human	ensembl	74_37	-1	known	in_frame_del	c.1082_1080	p.S361in_frame_del	1.000:1.000:1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN3	HGNC	ENSG00000053254	tier1			17	0	0.00	31	3	8.82
KHDRBS1	0	genome.wustl.edu	37	1	32503558	32503558	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	1	32503558	32503558	C	T	SNP	KHDRBS1	ENST00000327300	human	ensembl	74_37	+1	known	missense	c.1028	p.P343L	0.997	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS1	HGNC	ENSG00000121774	tier1	-	-	52	0	0.00	75	29	27.88
CCRN4L	0	genome.wustl.edu	37	4	139966602	139966602	+	Frame_Shift_Del	DEL	A	A	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	4	139966602	139966602	A	-	DEL	CCRN4L	ENST00000280614	human	ensembl	74_37	+1	known	frame_shift_del	c.1270	p.T424fs	0.958	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	CCRN4L	HGNC	ENSG00000151014	tier1			51	0	0.00	16	2	11.11
LOC440700	0	genome.wustl.edu	37	1	165677941	165677941	+	RNA	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	1	165677941	165677941	C	T	SNP	LOC440700	ENST00000400982	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	RP11-466F5.6	Clone_based_vega_gene	ENSG00000215838	tier1	-	-	38	0	0.00	2	10	83.33
FASN	0	genome.wustl.edu	37	17	80041751	80041751	+	Silent	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	17	80041751	80041751	C	T	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	silent	c.5115	p.R1705	0.931	pfam_ADH_C,smart_PKS_ER	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	tier1	-	-	69	0	0.00	41	4	8.89
MUC4	0	genome.wustl.edu	37	3	195512366	195512366	+	Missense_Mutation	SNP	C	C	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	3	195512366	195512366	C	G	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.6085	p.D2029H	0.003	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	106	1	0.93	83	25	23.15
FLG2	0	genome.wustl.edu	37	1	152328366	152328366	+	Silent	SNP	G	G	C			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	1	152328366	152328366	G	C	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	silent	c.1896	p.G632	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	tier1	-	-	107	1	0.92	61	40	39.22
R3HDM1	0	genome.wustl.edu	37	2	136396651	136396651	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	2	136396651	136396651	G	A	SNP	R3HDM1	ENST00000264160	human	ensembl	74_37	+1	known	missense	c.1178	p.S393N	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991	tier1	-	-	31	0	0.00	53	18	25.35
CPS1	0	genome.wustl.edu	37	2	211540493	211540493	+	Missense_Mutation	SNP	C	C	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	2	211540493	211540493	C	A	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.4221	p.N1407K	1.000	pfam_MGS-like_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	tier1	-	-	43	0	0.00	39	9	18.75
SH2D4A	0	genome.wustl.edu	37	8	19190593	19190593	+	Silent	SNP	G	G	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	8	19190593	19190593	G	A	SNP	SH2D4A	ENST00000265807	human	ensembl	74_37	+1	known	silent	c.309	p.R103	0.003	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D4A	HGNC	ENSG00000104611	tier1	-	-	48	0	0.00	44	4	8.33
GINS1	0	genome.wustl.edu	37	20	25422336	25422336	+	Splice_Site	SNP	A	A	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	20	25422336	25422336	A	G	SNP	GINS1	ENST00000262460	human	ensembl	74_37	+1	known	splice_site	c.448-2	e6-2	1.000	-	-	-	no_errors	GINS1	HGNC	ENSG00000101003	tier1	-	-	49	0	0.00	45	13	22.41
SHANK1	0	genome.wustl.edu	37	19	51215298	51215298	+	Missense_Mutation	SNP	A	A	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	19	51215298	51215298	A	G	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	missense	c.866	p.M289T	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	tier1	-	-	71	0	0.00	44	30	40.54
ARRDC1	0	genome.wustl.edu	37	9	140507315	140507315	+	RNA	SNP	T	T	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	9	140507315	140507315	T	A	SNP	ARRDC1	ENST00000491911	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.300	-	-	-	no_errors	ARRDC1	HGNC	ENSG00000197070	tier1	-	-	47	0	0.00	16	6	27.27
NPIPA1	0	genome.wustl.edu	37	16	15045631	15045631	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	16	15045631	15045631	G	A	SNP	NPIPA1	ENST00000328085	human	ensembl	74_37	+1	novel	missense	c.802	p.E268K	0.032	NULL	NULL	-	no_errors	NPIPA1	HGNC	ENSG00000183426	tier1	rs201805072	-	41	0	0.00	7	5	41.67
ACCS	0	genome.wustl.edu	37	11	44104733	44104733	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	11	44104733	44104733	G	T	SNP	ACCS	ENST00000263776	human	ensembl	74_37	+1	known	missense	c.1126	p.V376L	0.999	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCS	HGNC	ENSG00000110455	tier1	-	-	54	0	0.00	9	31	77.50
TRPM6	0	genome.wustl.edu	37	9	77502760	77502760	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	9	77502760	77502760	G	T	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.13	p.P5T	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	tier1	-	-	34	0	0.00	22	14	38.89
YAF2	0	genome.wustl.edu	37	12	42629563	42629563	+	RNA	DEL	A	A	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	12	42629563	42629563	A	-	DEL	YAF2	ENST00000541702	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	YAF2	HGNC	ENSG00000015153	tier1			27	0	0.00	22	2	8.33
PLEKHO1	0	genome.wustl.edu	37	1	150128083	150128083	+	RNA	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	1	150128083	150128083	C	T	SNP	PLEKHO1	ENST00000477309	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PLEKHO1	HGNC	ENSG00000023902	tier1	-	-	59	0	0.00	27	25	48.08
PRKD1	0	genome.wustl.edu	37	14	30396622	30396623	+	In_Frame_Ins	INS	-	-	CCCGGA			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	14	30396622	30396623	-	CCCGGA	INS	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	in_frame_ins	c.97_96	p.32in_frame_insSG	1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304	tier1			NA	NA	NA	NA	NA	NA
NPFFR2	0	genome.wustl.edu	37	4	73013005	73013005	+	Missense_Mutation	SNP	T	T	C			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	4	73013005	73013005	T	C	SNP	NPFFR2	ENST00000308744	human	ensembl	74_37	+1	known	missense	c.1045	p.F349L	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291	tier1	-	-	54	0	0.00	42	17	28.81
LOC645752	0	genome.wustl.edu	37	15	78207077	78207077	+	RNA	SNP	G	G	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	15	78207077	78207077	G	T	SNP	LOC645752	ENST00000563349	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	RP11-114H24.2	Clone_based_vega_gene	ENSG00000260776	tier1	-	-	121	1	0.82	140	57	28.93
SCAF1	0	genome.wustl.edu	37	19	50155567	50155569	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	19	50155567	50155569	AAG	-	DEL	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	in_frame_del	c.1921_1923	p.K644in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461	tier1			14	0	0.00	18	6	25.00
ZFHX3	0	genome.wustl.edu	37	16	72991713	72991715	+	In_Frame_Del	DEL	CCA	CCA	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	16	72991713	72991715	CCA	-	DEL	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	in_frame_del	c.2332_2330	p.V777in_frame_del	0.943:0.039:0.779	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	tier1			43	0	0.00	8	2	20.00
CCDC71	0	genome.wustl.edu	37	3	49201437	49201437	+	Frame_Shift_Del	DEL	C	C	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	3	49201437	49201437	C	-	DEL	CCDC71	ENST00000321895	human	ensembl	74_37	-1	known	frame_shift_del	c.205	p.D69fs	1.000	NULL	NULL	-	no_errors	CCDC71	HGNC	ENSG00000177352	tier1			45	0	0.00	14	2	12.50
PIEZO1	0	genome.wustl.edu	37	16	88798917	88798919	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	16	88798917	88798919	CAG	-	DEL	PIEZO1	ENST00000301015	human	ensembl	74_37	-1	novel	in_frame_del	c.2817_2815	p.L939in_frame_del	1.000:1.000:1.000	NULL	pfam_Piezo	-	no_errors	PIEZO1	HGNC	ENSG00000103335	tier1			76	0	0.00	33	4	10.81
ENSG00000188850	0	genome.wustl.edu	37	5	43348816	43348817	+	RNA	INS	-	-	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	5	43348816	43348817	-	A	INS	ENSG00000188850	ENST00000511991	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	RP11-159F24.2	Clone_based_vega_gene	ENSG00000188850	tier1			14	0	0.00	9	4	30.77
SP140	0	genome.wustl.edu	37	2	231112646	231112646	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	2	231112646	231112646	G	A	SNP	SP140	ENST00000392045	human	ensembl	74_37	+1	known	missense	c.758	p.G253E	0.000	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263	tier1	-	-	45	0	0.00	31	5	13.89
SMC5	0	genome.wustl.edu	37	9	72959324	72959325	+	RNA	DEL	AT	AT	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	9	72959324	72959325	AT	-	DEL	SMC5	ENST00000475540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.121:0.027	-	-	-	no_errors	SMC5	HGNC	ENSG00000198887	tier1			10	0	0.00	7	7	50.00
ENSG00000215933	0	genome.wustl.edu	37	X	71372202	71372209	+	RNA	DEL	CGCGCGCA	CGCGCGCA	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	CGCGCGCA	CGCGCGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	X	71372202	71372209	CGCGCGCA	-	DEL	ENSG00000215933	ENST00000401114	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.001:0.015:0.009	-	-	-	no_errors	BX119917.1	Clone_based_ensembl_gene	ENSG00000215933	tier1			NA	NA	NA	NA	NA	NA
APITD1-CORT	0	genome.wustl.edu	37	1	10493968	10493968	+	Nonsense_Mutation	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	1	10493968	10493968	C	T	SNP	APITD1-CORT	ENST00000400900	human	ensembl	74_37	+1	known	nonsense	c.121	p.Q41*	0.824	superfamily_Histone-fold	pfam_Somatostatin/Cortistatin_C,superfamily_Histone-fold	-	no_errors	APITD1-CORT	HGNC	ENSG00000251503	tier1	-	-	53	0	0.00	27	4	12.50
RGS21	0	genome.wustl.edu	37	1	192316509	192316522	+	Frame_Shift_Del	DEL	AGCCAACCAAGGTA	AGCCAACCAAGGTA	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	AGCCAACCAAGGTA	AGCCAACCAAGGTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	1	192316509	192316522	AGCCAACCAAGGTA	-	DEL	RGS21	ENST00000417209	human	ensembl	74_37	+1	known	frame_shift_del	c.78_88	p.L26fs	1.000:1.000:1.000:0.991:0.990:0.968:0.645:0.950:1.000:1.000:1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS21	HGNC	ENSG00000253148	tier1			NA	NA	NA	NA	NA	NA
WBP2NL	0	genome.wustl.edu	37	22	42398850	42398854	+	RNA	DEL	TACTT	TACTT	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	TACTT	TACTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	22	42398850	42398854	TACTT	-	DEL	WBP2NL	ENST00000461730	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.003:0.012:0.016:0.015	-	-	-	no_errors	WBP2NL	HGNC	ENSG00000183066	tier1			NA	NA	NA	NA	NA	NA
ENSG00000221538	0	genome.wustl.edu	37	1	111195567	111195572	+	RNA	DEL	TGTGTG	TGTGTG	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	TGTGTG	TGTGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	1	111195567	111195572	TGTGTG	-	DEL	ENSG00000221538	ENST00000408611	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.005:0.004:0.004:0.002:0.002:0.000	-	-	-	no_errors	AL365361.1	Clone_based_ensembl_gene	ENSG00000221538	tier1			NA	NA	NA	NA	NA	NA
SYNE4	0	genome.wustl.edu	37	19	36497392	36497392	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	19	36497392	36497392	C	T	SNP	SYNE4	ENST00000324444	human	ensembl	74_37	-1	known	missense	c.800	p.R267Q	0.030	NULL	pfam_KASH,pfscan_KASH	-	no_errors	SYNE4	HGNC	ENSG00000181392	tier1	rs200616477	-	56	0	0.00	63	13	17.11
KIF1C	0	genome.wustl.edu	37	17	4910377	4910377	+	Nonsense_Mutation	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	17	4910377	4910377	C	T	SNP	KIF1C	ENST00000320785	human	ensembl	74_37	+1	known	nonsense	c.1333	p.Q445*	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250	tier1	-	-	79	0	0.00	42	5	10.64
MT1HL1	0	genome.wustl.edu	37	1	237167633	237167633	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	1	237167633	237167633	C	T	SNP	MT1HL1	ENST00000464121	human	ensembl	74_37	-1	known	missense	c.40	p.A14T	0.006	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT1HL1	HGNC	ENSG00000244020	tier1	-	-	47	0	0.00	12	17	58.62
ARMC3	0	genome.wustl.edu	37	10	23326384	23326384	+	Frame_Shift_Del	DEL	G	G	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	10	23326384	23326384	G	-	DEL	ARMC3	ENST00000298032	human	ensembl	74_37	+1	known	frame_shift_del	c.2595	p.A866fs	0.995	NULL	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309	tier1			42	0	0.00	10	2	16.67
SASH1	0	genome.wustl.edu	37	6	148846428	148846428	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	6	148846428	148846428	G	T	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	missense	c.1211	p.R404I	1.000	pfam_rSAM/SH3_domain-containing	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961	tier1	-	-	50	0	0.00	31	43	58.11
ANG	0	genome.wustl.edu	37	14	21162109	21162109	+	Missense_Mutation	SNP	T	T	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	14	21162109	21162109	T	A	SNP	ANG	ENST00000336811	human	ensembl	74_37	+1	known	missense	c.386	p.V129D	0.157	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	ANG	HGNC	ENSG00000214274	tier1	-	-	87	0	0.00	55	24	30.38
GRM6	0	genome.wustl.edu	37	5	178413641	178413641	+	Nonsense_Mutation	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	5	178413641	178413641	C	T	SNP	GRM6	ENST00000231188	human	ensembl	74_37	-1	known	nonsense	c.1614	p.W538*	1.000	pfam_GPCR_3_9-Cys_dom	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM6	HGNC	ENSG00000113262	tier1	-	-	59	0	0.00	24	4	14.29
C4orf50	0	genome.wustl.edu	37	4	5990869	5990870	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	4	5990869	5990870	CT	-	DEL	C4orf50	ENST00000531445	human	ensembl	74_37	-1	known	frame_shift_del	c.630_629	p.E210fs	0.000:0.000	NULL	NULL	-	no_errors	C4orf50	HGNC	ENSG00000181215	tier1			39	0	0.00	22	3	12.00
ZCCHC12	0	genome.wustl.edu	37	X	117960020	117960020	+	Silent	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	X	117960020	117960020	C	T	SNP	ZCCHC12	ENST00000310164	human	ensembl	74_37	+1	known	silent	c.813	p.D271	0.946	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460	tier1	-	-	35	0	0.00	5	11	68.75
RTL1	0	genome.wustl.edu	37	14	101347810	101347810	+	Missense_Mutation	SNP	A	A	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	14	101347810	101347810	A	G	SNP	RTL1	ENST00000534062	human	ensembl	74_37	-1	known	missense	c.3316	p.S1106P	0.000	NULL	pfam_Retrotrans_gag_dom,superfamily_Peptidase_aspartic_dom	-	no_errors	RTL1	HGNC	ENSG00000254656	tier1	-	-	26	0	0.00	16	8	33.33
BMP6	0	genome.wustl.edu	37	6	7727534	7727534	+	Missense_Mutation	SNP	C	C	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	6	7727534	7727534	C	A	SNP	BMP6	ENST00000283147	human	ensembl	74_37	+1	known	missense	c.346	p.Q116K	0.341	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162	tier1	-	-	10	0	0.00	7	4	36.36
LRIT2	0	genome.wustl.edu	37	10	85982349	85982349	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	10	85982349	85982349	C	T	SNP	LRIT2	ENST00000538192	human	ensembl	74_37	-1	known	missense	c.1010	p.C337Y	0.998	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIT2	HGNC	ENSG00000204033	tier1	-	-	37	0	0.00	10	15	60.00
FAM87A	0	genome.wustl.edu	37	8	328029	328029	+	RNA	SNP	A	A	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	8	328029	328029	A	G	SNP	FAM87A	ENST00000330148	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	FAM87A	HGNC	ENSG00000182366	tier1	-	-	46	0	0.00	28	16	36.36
PIK3R4	0	genome.wustl.edu	37	3	130425964	130425992	+	Frame_Shift_Del	DEL	TTTACATGTTTTCTGGCTATGAAAATATA	TTTACATGTTTTCTGGCTATGAAAATATA	-			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	TTTACATGTTTTCTGGCTATGAAAATATA	TTTACATGTTTTCTGGCTATGAAAATATA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	3	130425964	130425992	TTTACATGTTTTCTGGCTATGAAAATATA	-	DEL	PIK3R4	ENST00000356763	human	ensembl	74_37	-1	known	frame_shift_del	c.2549_2534	p.A845fs	1.000:0.999:0.900:0.998:0.998:0.993:1.000:1.000:1.000:1.000:1.000:0.997:1.000:0.993:0.958:0.997	NULL	pfam_Prot_kinase_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	tier1			NA	NA	NA	NA	NA	NA
AHNAK2	0	genome.wustl.edu	37	14	105413459	105413459	+	Missense_Mutation	SNP	A	A	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	14	105413459	105413459	A	G	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.8329	p.S2777P	0.466	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	tier1	-	-	97	0	0.00	67	60	47.24
ADCY8	0	genome.wustl.edu	37	8	132051899	132051899	+	Silent	SNP	G	G	A			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	8	132051899	132051899	G	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	silent	c.681	p.C227	0.998	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	tier1	-	-	24	0	0.00	10	12	54.55
TP53	0	genome.wustl.edu	37	17	7578393	7578393	+	Missense_Mutation	SNP	A	A	C			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	17	7578393	7578393	A	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.537	p.H179Q	0.699	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	39	0	0.00	8	7	46.67
FAM210B	0	genome.wustl.edu	37	20	54941148	54941148	+	Missense_Mutation	SNP	C	C	G			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	20	54941148	54941148	C	G	SNP	FAM210B	ENST00000371384	human	ensembl	74_37	+1	known	missense	c.384	p.I128M	0.995	pfam_DUF1279	pfam_DUF1279	-	no_errors	FAM210B	HGNC	ENSG00000124098	tier1	-	-	21	0	0.00	30	11	26.83
ESPN	0	genome.wustl.edu	37	1	6500348	6500348	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80J-02A-11D-A417-09	TCGA-VT-A80J-11A-22D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9f5f2b4-7057-4dbc-aa22-577a341c4045	fd6129c3-faca-4233-9ba6-92cc70bcb0de	1	6500348	6500348	C	T	SNP	ESPN	ENST00000377828	human	ensembl	74_37	+1	known	missense	c.523	p.P175S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_WH2_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_WH2_dom	-	no_errors	ESPN	HGNC	ENSG00000187017	tier1	-	-	60	0	0.00	45	4	8.16
