Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TNPO1	0	genome.wustl.edu	37	5	72112474	72112474	+	RNA	SNP	C	C	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	5	72112474	72112474	C	A	SNP	TNPO1	ENST00000515483	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	TNPO1	HGNC	ENSG00000083312	tier1	-	-	56	0	0.00	25	4	13.79
CACNA1I	0	genome.wustl.edu	37	22	40055726	40055726	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	22	40055726	40055726	G	A	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.2491	p.V831I	1.000	pfam_Ion_trans_dom,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346	tier1	rs199827082	-	40	0	0.00	35	19	35.19
ZZZ3	0	genome.wustl.edu	37	1	78098138	78098138	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	1	78098138	78098138	G	T	SNP	ZZZ3	ENST00000370801	human	ensembl	74_37	-1	known	missense	c.902	p.T301K	0.740	NULL	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549	tier1	-	-	39	0	0.00	41	4	8.89
ATRX	0	genome.wustl.edu	37	X	76939697	76939697	+	Nonsense_Mutation	SNP	C	C	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	X	76939697	76939697	C	A	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	nonsense	c.1051	p.E351*	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	18	0	0.00	14	4	22.22
ENSG00000267943	0	genome.wustl.edu	37	19	53513293	53513293	+	RNA	SNP	A	A	C			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	19	53513293	53513293	A	C	SNP	ENSG00000267943	ENST00000596769	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.124	-	-	-	no_errors	CTD-2620I22.3	Clone_based_vega_gene	ENSG00000267943	tier1	-	-	20	0	0.00	16	9	36.00
A2M	0	genome.wustl.edu	37	12	9248236	9248236	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	12	9248236	9248236	C	T	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.1912	p.D638N	0.020	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899	tier1	-	-	84	0	0.00	72	8	10.00
SATB2	0	genome.wustl.edu	37	2	200245158	200245158	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	2	200245158	200245158	G	A	SNP	SATB2	ENST00000260926	human	ensembl	74_37	-1	known	missense	c.526	p.R176C	1.000	superfamily_Lambda_DNA-bd_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042	tier1	-	-	58	0	0.00	65	10	13.33
RAD54L2	0	genome.wustl.edu	37	3	51624506	51624508	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	3	51624506	51624508	GAG	-	DEL	RAD54L2	ENST00000409535	human	ensembl	74_37	+1	known	in_frame_del	c.70_72	p.E27in_frame_del	1.000:1.000:1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080	tier1			28	0	0.00	28	5	15.15
INPP4B	0	genome.wustl.edu	37	4	143159017	143159017	+	Missense_Mutation	SNP	C	C	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	4	143159017	143159017	C	A	SNP	INPP4B	ENST00000509777	human	ensembl	74_37	-1	known	missense	c.836	p.R279I	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4B	HGNC	ENSG00000109452	tier1	-	-	109	0	0.00	111	15	11.90
OR5P2	0	genome.wustl.edu	37	11	7817740	7817740	+	Silent	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	11	7817740	7817740	G	T	SNP	OR5P2	ENST00000329434	human	ensembl	74_37	-1	known	silent	c.750	p.T250	0.004	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5P2	HGNC	ENSG00000183303	tier1	-	-	43	0	0.00	30	6	16.67
KIAA1614	0	genome.wustl.edu	37	1	180905484	180905484	+	Silent	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	1	180905484	180905484	G	A	SNP	KIAA1614	ENST00000367588	human	ensembl	74_37	+1	known	silent	c.2439	p.S813	0.000	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835	tier1	-	-	32	0	0.00	45	4	8.16
RAE1	0	genome.wustl.edu	37	20	55949675	55949675	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	20	55949675	55949675	G	A	SNP	RAE1	ENST00000371242	human	ensembl	74_37	+1	known	missense	c.838	p.A280T	0.973	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RAE1	HGNC	ENSG00000101146	tier1	-	-	47	0	0.00	41	7	14.58
KIF1C	0	genome.wustl.edu	37	17	4903611	4903611	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	17	4903611	4903611	G	A	SNP	KIF1C	ENST00000320785	human	ensembl	74_37	+1	known	missense	c.70	p.A24T	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250	tier1	-	-	62	0	0.00	44	4	8.33
TCF25	0	genome.wustl.edu	37	16	89951019	89951020	+	Frame_Shift_Ins	INS	-	-	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	16	89951019	89951020	-	A	INS	TCF25	ENST00000263346	human	ensembl	74_37	+1	known	frame_shift_ins	c.384_385	p.Q131fs	1.000:1.000	NULL	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002	tier1			39	0	0.00	49	7	12.50
MAMDC4	0	genome.wustl.edu	37	9	139752912	139752912	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	9	139752912	139752912	G	T	SNP	MAMDC4	ENST00000445819	human	ensembl	74_37	+1	known	missense	c.2972	p.G991V	0.053	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	MAMDC4	HGNC	ENSG00000177943	tier1	-	-	30	0	0.00	37	7	15.91
PCDH15	0	genome.wustl.edu	37	10	55626560	55626560	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	10	55626560	55626560	G	T	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.3559	p.P1187T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	tier1	-	-	43	0	0.00	57	7	10.94
ENSG00000221121	0	genome.wustl.edu	37	12	82736380	82736385	+	RNA	DEL	ATATAC	ATATAC	-			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	ATATAC	ATATAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	12	82736380	82736385	ATATAC	-	DEL	ENSG00000221121	ENST00000408194	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.012:0.010:0.008:0.005:0.002:0.001	-	-	-	no_errors	AC083811.1	Clone_based_ensembl_gene	ENSG00000221121	tier1			NA	NA	NA	NA	NA	NA
CNGA1	0	genome.wustl.edu	37	4	47945298	47945298	+	Missense_Mutation	SNP	C	C	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	4	47945298	47945298	C	A	SNP	CNGA1	ENST00000402813	human	ensembl	74_37	-1	known	missense	c.556	p.D186Y	0.891	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515	tier1	-	-	77	0	0.00	115	21	15.44
OR2T33	0	genome.wustl.edu	37	1	248436456	248436456	+	Missense_Mutation	SNP	C	C	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	1	248436456	248436456	C	A	SNP	OR2T33	ENST00000318021	human	ensembl	74_37	-1	known	missense	c.661	p.A221S	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212	tier1	rs142107755	-	41	0	0.00	34	4	10.53
FAT1	0	genome.wustl.edu	37	4	187554873	187554873	+	Nonsense_Mutation	SNP	C	C	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	4	187554873	187554873	C	A	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	nonsense	c.4288	p.E1430*	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	tier1	-	-	78	0	0.00	67	6	8.22
ENSG00000221281	0	genome.wustl.edu	37	6	67069361	67069362	+	RNA	DEL	AC	AC	-			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	6	67069361	67069362	AC	-	DEL	ENSG00000221281	ENST00000408354	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC002485.1	Clone_based_ensembl_gene	ENSG00000221281	tier1			18	0	0.00	17	5	22.73
LINC00842	0	genome.wustl.edu	37	10	47151672	47151672	+	RNA	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	10	47151672	47151672	G	T	SNP	LINC00842	ENST00000319426	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00842	HGNC	ENSG00000223477	tier1	rs202065397	-	13	0	0.00	7	4	36.36
TFAP2C	0	genome.wustl.edu	37	20	55206468	55206468	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	20	55206468	55206468	G	T	SNP	TFAP2C	ENST00000201031	human	ensembl	74_37	+1	known	missense	c.256	p.A86S	0.072	prints_TF_AP2_gamma	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_gamma	-	no_errors	TFAP2C	HGNC	ENSG00000087510	tier1	-	-	62	0	0.00	41	4	8.70
PGR	0	genome.wustl.edu	37	11	100996760	100996760	+	Silent	SNP	G	G	C			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	11	100996760	100996760	G	C	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	silent	c.1767	p.V589	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175	tier1	-	-	88	0	0.00	92	10	9.71
KLK13	0	genome.wustl.edu	37	19	51567062	51567062	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	19	51567062	51567062	G	T	SNP	KLK13	ENST00000441527	human	ensembl	74_37	-1	known	missense	c.109	p.P37T	0.000	NULL	NULL	-	no_errors	KLK13	HGNC	ENSG00000167759	tier1	-	-	45	0	0.00	44	7	13.73
PLEKHH1	0	genome.wustl.edu	37	14	68038854	68038854	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	14	68038854	68038854	G	T	SNP	PLEKHH1	ENST00000329153	human	ensembl	74_37	+1	known	missense	c.1588	p.V530F	1.000	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	tier1	-	-	66	0	0.00	43	4	8.51
LOC100287042	0	genome.wustl.edu	37	17	73269841	73269842	+	RNA	INS	-	-	TTATT			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	17	73269841	73269842	-	TTATT	INS	LOC100287042	ENST00000585075	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.004	-	-	-	no_errors	RP11-649A18.12	Clone_based_vega_gene	ENSG00000263843	tier1			NA	NA	NA	NA	NA	NA
CALN1	0	genome.wustl.edu	37	7	71275389	71275389	+	Missense_Mutation	SNP	T	T	C			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	7	71275389	71275389	T	C	SNP	CALN1	ENST00000395275	human	ensembl	74_37	-1	known	missense	c.590	p.N197S	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALN1	HGNC	ENSG00000183166	tier1	-	-	67	0	0.00	43	4	8.51
TTC22	0	genome.wustl.edu	37	1	55251777	55251777	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	1	55251777	55251777	C	T	SNP	TTC22	ENST00000371276	human	ensembl	74_37	-1	known	missense	c.899	p.R300H	1.000	smart_TPR_repeat	smart_TPR_repeat	-	no_errors	TTC22	HGNC	ENSG00000006555	tier1	rs145786276	-	58	0	0.00	40	4	9.09
SARM1	0	genome.wustl.edu	37	17	26708340	26708340	+	Nonsense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	17	26708340	26708340	G	T	SNP	SARM1	ENST00000457710	human	ensembl	74_37	+1	novel	nonsense	c.487	p.E163*	1.000	superfamily_ARM-type_fold	pfam_SAM_2,pfam_SAM_type1,superfamily_ARM-type_fold,superfamily_TIR_dom,superfamily_SAM/pointed,smart_SAM,smart_TIR_dom,pfscan_SAM	-	no_errors	SARM1	HGNC	ENSG00000004139	tier1	-	-	54	0	0.00	26	7	21.21
FAM111B	0	genome.wustl.edu	37	11	58892214	58892214	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	11	58892214	58892214	C	T	SNP	FAM111B	ENST00000343597	human	ensembl	74_37	+1	known	missense	c.644	p.A215V	0.049	NULL	superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111B	HGNC	ENSG00000189057	tier1	-	-	41	0	0.00	40	4	9.09
IMPDH2	0	genome.wustl.edu	37	3	49066224	49066224	+	Silent	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	3	49066224	49066224	G	T	SNP	IMPDH2	ENST00000326739	human	ensembl	74_37	-1	known	silent	c.114	p.L38	0.919	pfam_IMP_DH_GMPRt,pirsf_IMP_DH,tigrfam_IMP_DH	pfam_IMP_DH_GMPRt,pfam_CBS_dom,pfam_2Npropane_dOase,pfam_FMN-dep_DH,pfam_NanE,smart_CBS_dom,pirsf_IMP_DH,tigrfam_IMP_DH	-	no_errors	IMPDH2	HGNC	ENSG00000178035	tier1	-	-	31	0	0.00	10	3	23.08
SYT4	0	genome.wustl.edu	37	18	40853554	40853554	+	Silent	SNP	T	T	C			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	18	40853554	40853554	T	C	SNP	SYT4	ENST00000255224	human	ensembl	74_37	-1	known	silent	c.840	p.R280	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872	tier1	-	-	77	0	0.00	71	15	17.44
SMYD5	0	genome.wustl.edu	37	2	73452008	73452008	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	2	73452008	73452008	G	T	SNP	SMYD5	ENST00000389501	human	ensembl	74_37	+1	known	missense	c.955	p.V319L	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SMYD5	HGNC	ENSG00000135632	tier1	-	-	31	0	0.00	34	4	10.53
LIPE	0	genome.wustl.edu	37	19	42930831	42930831	+	Silent	SNP	A	A	G			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	19	42930831	42930831	A	G	SNP	LIPE	ENST00000244289	human	ensembl	74_37	-1	known	silent	c.471	p.P157	0.044	NULL	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435	tier1	-	-	27	0	0.00	11	3	21.43
SHARPIN	0	genome.wustl.edu	37	8	145154476	145154476	+	Silent	SNP	C	C	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	8	145154476	145154476	C	T	SNP	SHARPIN	ENST00000398712	human	ensembl	74_37	-1	known	silent	c.705	p.A235	0.001	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	SHARPIN	HGNC	ENSG00000179526	tier1	-	-	32	0	0.00	34	5	12.50
MFSD2A	0	genome.wustl.edu	37	1	40432576	40432576	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	1	40432576	40432576	G	A	SNP	MFSD2A	ENST00000372809	human	ensembl	74_37	+1	known	missense	c.938	p.G313D	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD2A	HGNC	ENSG00000168389	tier1	-	-	20	0	0.00	21	4	16.00
ZAK	0	genome.wustl.edu	37	2	174086202	174086204	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	2	174086202	174086204	GAT	-	DEL	ZAK	ENST00000338983	human	ensembl	74_37	+1	known	in_frame_del	c.1312_1314	p.D441in_frame_del	0.975:0.977:0.983	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLTK	Uniprot_gn	ENSG00000091436	tier1			55	0	0.00	40	5	11.11
LOC101927345	0	genome.wustl.edu	37	1	143394413	143394413	+	RNA	SNP	C	C	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	1	143394413	143394413	C	T	SNP	LOC101927345	ENST00000415543	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.031	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261	tier1	rs6696542	-	12	0	0.00	16	10	38.46
BEND4	0	genome.wustl.edu	37	4	42119561	42119561	+	Missense_Mutation	SNP	T	T	G			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	4	42119561	42119561	T	G	SNP	BEND4	ENST00000502486	human	ensembl	74_37	-1	known	missense	c.1579	p.S527R	1.000	NULL	pfam_BEN_domain	-	no_errors	BEND4	HGNC	ENSG00000188848	tier1	-	-	45	0	0.00	18	6	25.00
FGB	0	genome.wustl.edu	37	4	155487708	155487708	+	Missense_Mutation	SNP	A	A	G			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	4	155487708	155487708	A	G	SNP	FGB	ENST00000302068	human	ensembl	74_37	+1	known	missense	c.374	p.N125S	0.009	pfam_Fibrinogen_a/b/g_coil_dom	pfam_Fibrinogen_a/b/g_C_dom,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGB	HGNC	ENSG00000171564	tier1	-	-	58	0	0.00	37	5	11.90
BTN2A2	0	genome.wustl.edu	37	6	26390257	26390257	+	Missense_Mutation	SNP	C	C	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	6	26390257	26390257	C	A	SNP	BTN2A2	ENST00000356709	human	ensembl	74_37	+1	known	missense	c.749	p.P250H	0.023	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A2	HGNC	ENSG00000124508	tier1	-	-	41	0	0.00	51	5	8.93
BUB1B	0	genome.wustl.edu	37	15	40505677	40505677	+	Splice_Site	SNP	T	T	C			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	15	40505677	40505677	T	C	SNP	BUB1B	ENST00000412359	human	ensembl	74_37	+1	known	splice_site	c.2720+2	e20+2	1.000	-	-	-	no_errors	BUB1B	HGNC	ENSG00000156970	tier1	-	-	41	0	0.00	30	7	18.92
VPS13A	0	genome.wustl.edu	37	9	79933265	79933265	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	9	79933265	79933265	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.5071	p.D1691N	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	tier1	-	-	103	0	0.00	96	27	21.77
ZAN	0	genome.wustl.edu	37	7	100365463	100365463	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	7	100365463	100365463	C	T	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	missense	c.4870	p.H1624Y	0.007	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	tier1	-	-	42	0	0.00	26	13	33.33
TSTD3	0	genome.wustl.edu	37	6	99968898	99968899	+	RNA	INS	-	-	GCGCC			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	6	99968898	99968899	-	GCGCC	INS	TSTD3	ENST00000452647	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	TSTD3	HGNC	ENSG00000228439	tier1			NA	NA	NA	NA	NA	NA
MS4A12	0	genome.wustl.edu	37	11	60264870	60264870	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	11	60264870	60264870	G	T	SNP	MS4A12	ENST00000016913	human	ensembl	74_37	+1	known	missense	c.79	p.A27S	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A12	HGNC	ENSG00000071203	tier1	-	-	60	0	0.00	64	20	23.81
EPHA4	0	genome.wustl.edu	37	2	222283642	222283642	+	RNA	SNP	C	C	G			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	2	222283642	222283642	C	G	SNP	EPHA4	ENST00000469354	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.986	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	tier1	-	-	55	0	0.00	51	7	12.07
SAMSN1	0	genome.wustl.edu	37	21	15870817	15870817	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	21	15870817	15870817	G	A	SNP	SAMSN1	ENST00000400566	human	ensembl	74_37	-1	known	missense	c.865	p.P289S	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SAMSN1	HGNC	ENSG00000155307	tier1	-	-	85	0	0.00	78	8	9.30
TBC1D31	0	genome.wustl.edu	37	8	124140520	124140521	+	Frame_Shift_Ins	INS	-	-	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	8	124140520	124140521	-	T	INS	TBC1D31	ENST00000287380	human	ensembl	74_37	+1	known	frame_shift_ins	c.1886_1885	p.H632fs	1.000:1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	TBC1D31	HGNC	ENSG00000156787	tier1			15	0	0.00	30	3	9.09
POP5	0	genome.wustl.edu	37	12	121017374	121017374	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	12	121017374	121017374	G	T	SNP	POP5	ENST00000357500	human	ensembl	74_37	-1	known	missense	c.340	p.L114I	1.000	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	-	no_errors	POP5	HGNC	ENSG00000167272	tier1	-	-	34	0	0.00	41	4	8.89
SON	0	genome.wustl.edu	37	21	34944044	34944044	+	RNA	SNP	C	C	G			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	21	34944044	34944044	C	G	SNP	SON	ENST00000473102	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	SON	HGNC	ENSG00000159140	tier1	-	-	104	0	0.00	81	19	19.00
OBSCN	0	genome.wustl.edu	37	1	228451851	228451851	+	Silent	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	1	228451851	228451851	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.4620	p.A1540	0.000	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	40	0	0.00	42	9	17.65
CCDC150	0	genome.wustl.edu	37	2	197584490	197584490	+	RNA	DEL	A	A	-			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	2	197584490	197584490	A	-	DEL	CCDC150	ENST00000461825	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC150	HGNC	ENSG00000144395	tier1			27	0	0.00	26	5	16.13
PROP1	0	genome.wustl.edu	37	5	177419969	177419969	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	5	177419969	177419969	G	A	SNP	PROP1	ENST00000308304	human	ensembl	74_37	-1	known	missense	c.422	p.A141V	0.846	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	PROP1	HGNC	ENSG00000175325	tier1	-	-	26	0	0.00	32	4	11.11
FAM196B	0	genome.wustl.edu	37	5	169309739	169309739	+	Silent	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	5	169309739	169309739	G	T	SNP	FAM196B	ENST00000377365	human	ensembl	74_37	-1	known	silent	c.1164	p.T388	0.012	NULL	NULL	-	no_errors	FAM196B	HGNC	ENSG00000204767	tier1	-	-	36	0	0.00	42	4	8.70
MAST4	0	genome.wustl.edu	37	5	66429429	66429429	+	Silent	SNP	C	C	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	5	66429429	66429429	C	T	SNP	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	silent	c.2190	p.Y730	0.995	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020	tier1	-	-	62	0	0.00	84	14	14.29
CPSF3	0	genome.wustl.edu	37	2	9597080	9597080	+	Missense_Mutation	SNP	A	A	G			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	2	9597080	9597080	A	G	SNP	CPSF3	ENST00000238112	human	ensembl	74_37	+1	known	missense	c.1622	p.E541G	1.000	pfam_CPSF73-100_C	pfam_CPSF73-100_C,pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3	HGNC	ENSG00000119203	tier1	-	-	110	0	0.00	96	9	8.57
BAIAP2	0	genome.wustl.edu	37	17	79080670	79080670	+	Missense_Mutation	SNP	A	A	G			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	17	79080670	79080670	A	G	SNP	BAIAP2	ENST00000321300	human	ensembl	74_37	+1	known	missense	c.1463	p.Q488R	1.000	NULL	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2	HGNC	ENSG00000175866	tier1	-	-	20	0	0.00	12	5	29.41
ENSG00000229334	0	genome.wustl.edu	37	3	194353772	194353773	+	RNA	INS	-	-	CCGCCCGACAG			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	3	194353772	194353773	-	CCGCCCGACAG	INS	ENSG00000229334	ENST00000447139	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.030:0.049	-	-	-	no_errors	AC046143.3	Clone_based_vega_gene	ENSG00000229334	tier1			NA	NA	NA	NA	NA	NA
TESPA1	0	genome.wustl.edu	37	12	55354969	55354969	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	12	55354969	55354969	G	A	SNP	TESPA1	ENST00000316577	human	ensembl	74_37	-1	known	missense	c.1550	p.A517V	0.001	NULL	NULL	-	no_errors	TESPA1	HGNC	ENSG00000135426	tier1	-	-	46	0	0.00	32	4	11.11
LRIF1	0	genome.wustl.edu	37	1	111494597	111494597	+	Silent	SNP	A	A	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	1	111494597	111494597	A	T	SNP	LRIF1	ENST00000369763	human	ensembl	74_37	-1	known	silent	c.909	p.S303	1.000	NULL	NULL	-	no_errors	LRIF1	HGNC	ENSG00000121931	tier1	-	-	52	0	0.00	49	5	9.26
ENSG00000232274	0	genome.wustl.edu	37	1	143189135	143189135	+	RNA	SNP	C	C	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	1	143189135	143189135	C	T	SNP	ENSG00000232274	ENST00000447389	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP11-782C8.2	Clone_based_vega_gene	ENSG00000232274	tier1	rs202151544	-	11	0	0.00	11	6	35.29
SMYD3	0	genome.wustl.edu	37	1	246490624	246490624	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	1	246490624	246490624	G	T	SNP	SMYD3	ENST00000388985	human	ensembl	74_37	-1	known	missense	c.410	p.T137N	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD3	HGNC	ENSG00000185420	tier1	-	-	59	0	0.00	42	4	8.70
NTRK3	0	genome.wustl.edu	37	15	88522367	88522367	+	RNA	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	15	88522367	88522367	G	A	SNP	NTRK3	ENST00000558306	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	NTRK3	HGNC	ENSG00000140538	tier1	-	-	68	0	0.00	54	13	19.40
ENSG00000244306	0	genome.wustl.edu	37	14	19856633	19856633	+	RNA	SNP	T	T	C			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	14	19856633	19856633	T	C	SNP	ENSG00000244306	ENST00000551334	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	CTD-2314B22.3	Clone_based_vega_gene	ENSG00000244306	tier1	-	-	13	0	0.00	11	4	26.67
FRMPD3	0	genome.wustl.edu	37	X	106846480	106846480	+	Silent	SNP	G	G	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	X	106846480	106846480	G	A	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	silent	c.5310	p.Q1770	0.516	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234	tier1	-	-	26	0	0.00	33	5	13.16
SMYD1	0	genome.wustl.edu	37	2	88387480	88387480	+	Silent	SNP	C	C	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	2	88387480	88387480	C	T	SNP	SMYD1	ENST00000419482	human	ensembl	74_37	+1	known	silent	c.414	p.H138	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593	tier1	-	-	30	0	0.00	28	5	14.71
RBMY1J	0	genome.wustl.edu	37	Y	24551698	24551698	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	Y	24551698	24551698	C	T	SNP	RBMY1J	ENST00000250831	human	ensembl	74_37	+1	known	missense	c.104	p.S35L	0.970	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RBM1CTR,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMY1J	HGNC	ENSG00000226941	tier1	-	-	24	0	0.00	10	2	16.67
GPR22	0	genome.wustl.edu	37	7	107115000	107115000	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	7	107115000	107115000	G	T	SNP	GPR22	ENST00000304402	human	ensembl	74_37	+1	known	missense	c.495	p.W165C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR22	HGNC	ENSG00000172209	tier1	-	-	32	0	0.00	20	5	20.00
AGAP1	0	genome.wustl.edu	37	2	236817475	236817475	+	Missense_Mutation	SNP	T	T	A			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	2	236817475	236817475	T	A	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.1249	p.C417S	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	tier1	-	-	71	0	0.00	60	16	21.05
ENSG00000203849	0	genome.wustl.edu	37	1	142620676	142620678	+	RNA	DEL	ATA	ATA	-			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	ATA	ATA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	1	142620676	142620678	ATA	-	DEL	ENSG00000203849	ENST00000369381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.222:0.217:0.212	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849	tier1			9	0	0.00	12	4	25.00
CWH43	0	genome.wustl.edu	37	4	48993490	48993490	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	4	48993490	48993490	G	T	SNP	CWH43	ENST00000226432	human	ensembl	74_37	+1	known	missense	c.255	p.Q85H	1.000	NULL	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	tier1	-	-	53	0	0.00	53	7	11.67
SNCB	0	genome.wustl.edu	37	5	176048292	176048292	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	5	176048292	176048292	C	T	SNP	SNCB	ENST00000310112	human	ensembl	74_37	-1	known	missense	c.295	p.A99T	1.000	pfam_Synuclein,prints_Synuclein_beta	pfam_Synuclein,prints_Synuclein,prints_Synuclein_beta	-	no_errors	SNCB	HGNC	ENSG00000074317	tier1	-	-	53	0	0.00	34	4	10.53
EPB41	0	genome.wustl.edu	37	1	29444350	29444352	+	RNA	DEL	TTC	TTC	-			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	1	29444350	29444352	TTC	-	DEL	EPB41	ENST00000460378	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	EPB41	HGNC	ENSG00000159023	tier1			45	0	0.00	55	14	20.29
ADAMTS2	0	genome.wustl.edu	37	5	178559313	178559313	+	Splice_Site	DEL	T	T	-			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	5	178559313	178559313	T	-	DEL	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	splice_site_del	c.2210-2	e15-2	0.999	-	-	-	no_errors	ADAMTS2	HGNC	ENSG00000087116	tier1			33	0	0.00	31	3	8.82
MUC20	0	genome.wustl.edu	37	3	195453048	195453053	+	In_Frame_Del	DEL	TTAGCA	TTAGCA	-			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	TTAGCA	TTAGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	3	195453048	195453053	TTAGCA	-	DEL	MUC20	ENST00000447234	human	ensembl	74_37	+1	known	in_frame_del	c.1574_1579	p.VSR525in_frame_delG	0.000:0.000:0.000:0.000:0.000:0.000	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	tier1			NA	NA	NA	NA	NA	NA
OGG1	0	genome.wustl.edu	37	3	9798456	9798456	+	Frame_Shift_Del	DEL	T	T	-			TCGA-VT-AB3D-01A-12D-A417-09	TCGA-VT-AB3D-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51932322-cd96-4c1b-a8ba-660637fff36b	c94fc63b-bf20-4585-9319-5f35435795df	3	9798456	9798456	T	-	DEL	OGG1	ENST00000302036	human	ensembl	74_37	+1	known	frame_shift_del	c.904	p.F303fs	1.000	superfamily_DNA_glycosylase,smart_HhH-GPD_domain,tigrfam_Ogg	pfam_OGG_N,pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,tigrfam_Ogg	-	no_errors	OGG1	HGNC	ENSG00000114026	tier1			44	0	0.00	30	3	9.09
