Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
C6	0	genome.wustl.edu	37	5	41160304	41160304	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	41160304	41160304	C	T	SNP	C6	ENST00000263413	human	ensembl	74_37	-1	known	missense	c.1624	p.V542M	0.977	prints_MAC_perforin	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537	tier1	-	-	55	0	0.00	33	4	10.81
OPHN1	0	genome.wustl.edu	37	X	67283813	67283813	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	X	67283813	67283813	C	A	SNP	OPHN1	ENST00000355520	human	ensembl	74_37	-1	known	missense	c.2041	p.G681W	0.990	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482	tier1	-	-	110	0	0.00	44	12	21.43
ERBB2IP	0	genome.wustl.edu	37	5	65349674	65349674	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	65349674	65349674	G	T	SNP	ERBB2IP	ENST00000284037	human	ensembl	74_37	+1	known	missense	c.2528	p.C843F	0.006	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	tier1	-	-	42	0	0.00	16	3	15.79
NRIP3	0	genome.wustl.edu	37	11	9007284	9007284	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	9007284	9007284	C	T	SNP	NRIP3	ENST00000309166	human	ensembl	74_37	-1	known	missense	c.536	p.R179H	0.998	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	-	no_errors	NRIP3	HGNC	ENSG00000175352	tier1	-	-	67	0	0.00	47	5	9.62
ANK2	0	genome.wustl.edu	37	4	114177028	114177028	+	Frame_Shift_Del	DEL	C	C	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	114177028	114177028	C	-	DEL	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	frame_shift_del	c.1128	p.H377fs	0.549	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	tier1			47	0	0.00	12	2	14.29
CA5BP1	0	genome.wustl.edu	37	X	15721071	15721071	+	RNA	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	X	15721071	15721071	G	A	SNP	CA5BP1	ENST00000380333	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CA5BP1	HGNC	ENSG00000186312	tier1	-	-	100	0	0.00	38	4	9.30
ITGB6	0	genome.wustl.edu	37	2	161052858	161052858	+	Frame_Shift_Del	DEL	A	A	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	2	161052858	161052858	A	-	DEL	ITGB6	ENST00000283249	human	ensembl	74_37	-1	known	frame_shift_del	c.215	p.L72fs	0.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,superfamily_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221	tier1			63	0	0.00	15	2	11.76
NOS1AP	0	genome.wustl.edu	37	1	162335173	162335173	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	162335173	162335173	G	-	DEL	NOS1AP	ENST00000493151	human	ensembl	74_37	+1	known	frame_shift_del	c.34	p.A12fs	0.001	NULL	NULL	-	no_errors	NOS1AP	HGNC	ENSG00000198929	tier1			48	0	0.00	14	2	12.50
RNF212	0	genome.wustl.edu	37	4	1087327	1087328	+	In_Frame_Ins	INS	-	-	CTGCCCAGGCTGGAGCCAGCC			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	1087327	1087328	-	CTGCCCAGGCTGGAGCCAGCC	INS	RNF212	ENST00000333673	human	ensembl	74_37	-1	known	in_frame_ins	c.722_721	p.S241in_frame_insWLAPAWAA	0.085:0.000	NULL	pfscan_Znf_RING	-	no_errors	RNF212	HGNC	ENSG00000178222	tier1			NA	NA	NA	NA	NA	NA
PAK4	0	genome.wustl.edu	37	19	39663769	39663769	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	39663769	39663769	C	T	SNP	PAK4	ENST00000358301	human	ensembl	74_37	+1	known	missense	c.416	p.A139V	0.004	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK4	HGNC	ENSG00000130669	tier1	-	-	42	0	0.00	10	3	23.08
IFT140	0	genome.wustl.edu	37	16	1612085	1612085	+	Silent	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	16	1612085	1612085	G	T	SNP	IFT140	ENST00000426508	human	ensembl	74_37	-1	known	silent	c.2100	p.S700	0.090	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	tier1	-	-	34	0	0.00	12	3	20.00
ASPH	0	genome.wustl.edu	37	8	62538749	62538749	+	RNA	SNP	T	T	C			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	8	62538749	62538749	T	C	SNP	ASPH	ENST00000519678	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ASPH	HGNC	ENSG00000198363	tier1	-	-	88	0	0.00	26	4	13.33
CHRND	0	genome.wustl.edu	37	2	233393680	233393680	+	Silent	SNP	A	A	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	2	233393680	233393680	A	G	SNP	CHRND	ENST00000258385	human	ensembl	74_37	+1	known	silent	c.618	p.T206	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRND	HGNC	ENSG00000135902	tier1	-	-	39	0	0.00	11	3	21.43
C10orf68	0	genome.wustl.edu	37	10	33136791	33136791	+	Missense_Mutation	SNP	T	T	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	10	33136791	33136791	T	A	SNP	C10orf68	ENST00000375025	human	ensembl	74_37	+1	known	missense	c.1640	p.I547N	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	tier1	-	-	131	0	0.00	28	3	9.68
FSIP2	0	genome.wustl.edu	37	2	186656883	186656883	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	2	186656883	186656883	C	A	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	missense	c.5287	p.P1763T	0.007	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	tier1	-	-	34	0	0.00	11	3	21.43
GBP4	0	genome.wustl.edu	37	1	89661049	89661049	+	Silent	SNP	C	C	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	89661049	89661049	C	A	SNP	GBP4	ENST00000355754	human	ensembl	74_37	-1	known	silent	c.294	p.V98	0.890	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP4	HGNC	ENSG00000162654	tier1	-	-	103	0	0.00	34	4	10.53
FRG1B	0	genome.wustl.edu	37	20	29624046	29624046	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	20	29624046	29624046	C	T	SNP	FRG1B	ENST00000278882	human	ensembl	74_37	+1	known	missense	c.70	p.P24S	1.000	pfam_FRG1,superfamily_Actin_cross-linking	pfam_FRG1,superfamily_Actin_cross-linking	-	no_errors	FRG1B	HGNC	ENSG00000149531	tier1	rs10153995	-	114	1	0.87	35	6	14.63
SMG1	0	genome.wustl.edu	37	16	18859323	18859323	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	16	18859323	18859323	G	-	DEL	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	frame_shift_del	c.5656	p.G1887fs	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	tier1			58	0	0.00	18	2	10.00
DCUN1D2	0	genome.wustl.edu	37	13	114115427	114115428	+	Frame_Shift_Ins	INS	-	-	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	13	114115427	114115428	-	A	INS	DCUN1D2	ENST00000478244	human	ensembl	74_37	-1	known	frame_shift_ins	c.545_544	p.W182fs	1.000:1.000	pfam_PONY_dom	pfam_PONY_dom,superfamily_UBA-like	-	no_errors	DCUN1D2	HGNC	ENSG00000150401	tier1			27	0	0.00	8	2	20.00
DSC3	0	genome.wustl.edu	37	18	28588458	28588458	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	18	28588458	28588458	G	T	SNP	DSC3	ENST00000360428	human	ensembl	74_37	-1	known	missense	c.1297	p.L433M	0.751	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC3	HGNC	ENSG00000134762	tier1	-	-	46	0	0.00	18	3	14.29
PANK4	0	genome.wustl.edu	37	1	2445492	2445492	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	2445492	2445492	G	T	SNP	PANK4	ENST00000378466	human	ensembl	74_37	-1	known	missense	c.1524	p.D508E	0.999	pfam_DUF89,superfamily_DUF89,pirsf_PanK_long	pfam_Type_II_PanK,pfam_DUF89,superfamily_DUF89,pirsf_PanK_long,tigrfam_Type_II_PanK	-	no_errors	PANK4	HGNC	ENSG00000157881	tier1	-	-	101	0	0.00	37	4	9.76
LOC101930284	0	genome.wustl.edu	37	1	143230391	143230391	+	RNA	SNP	A	A	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	143230391	143230391	A	T	SNP	LOC101930284	ENST00000422716	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.080	-	-	-	no_errors	RP11-782C8.5	Clone_based_vega_gene	ENSG00000225278	tier1	-	-	35	0	0.00	10	2	16.67
GALC	0	genome.wustl.edu	37	14	88454857	88454857	+	Frame_Shift_Del	DEL	C	C	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	14	88454857	88454857	C	-	DEL	GALC	ENST00000261304	human	ensembl	74_37	-1	known	frame_shift_del	c.206	p.R69fs	1.000	pfam_Glyco_hydro_59,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_59,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_59	-	no_errors	GALC	HGNC	ENSG00000054983	tier1			39	0	0.00	8	2	20.00
AQP12A	0	genome.wustl.edu	37	2	241631786	241631786	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	2	241631786	241631786	G	-	DEL	AQP12A	ENST00000429564	human	ensembl	74_37	+1	known	frame_shift_del	c.455	p.S152fs	1.000	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12A	HGNC	ENSG00000184945	tier1			63	0	0.00	26	3	10.34
MAPK8	0	genome.wustl.edu	37	10	49643210	49643211	+	RNA	INS	-	-	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	10	49643210	49643211	-	T	INS	MAPK8	ENST00000459755	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.961:1.000	-	-	-	no_errors	MAPK8	HGNC	ENSG00000107643	tier1			42	0	0.00	12	3	20.00
VDAC1	0	genome.wustl.edu	37	5	133316708	133316709	+	RNA	DEL	TT	TT	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	133316708	133316709	TT	-	DEL	VDAC1	ENST00000492324	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	VDAC1	HGNC	ENSG00000213585	tier1			30	0	0.00	6	3	33.33
ENSG00000272913	0	genome.wustl.edu	37	2	96191752	96191752	+	RNA	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	2	96191752	96191752	G	A	SNP	ENSG00000272913	ENST00000609975	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.769	-	-	-	no_errors	RP11-440D17.3	Clone_based_vega_gene	ENSG00000272913	tier1	-	-	52	0	0.00	15	3	16.67
UTP3	0	genome.wustl.edu	37	4	71554620	71554622	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	71554620	71554622	GAG	-	DEL	UTP3	ENST00000254803	human	ensembl	74_37	+1	known	in_frame_del	c.226_228	p.E79in_frame_del	0.044:0.001:0.001	NULL	pfam_Sas10_C_dom,pfam_Sas10/Utp3/C1D	-	no_errors	UTP3	HGNC	ENSG00000132467	tier1			53	0	0.00	15	3	16.67
AMIGO3	0	genome.wustl.edu	37	3	49756266	49756266	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	3	49756266	49756266	C	A	SNP	AMIGO3	ENST00000320431	human	ensembl	74_37	-1	known	missense	c.633	p.K211N	0.998	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AMIGO3	HGNC	ENSG00000176020	tier1	-	-	94	0	0.00	43	4	8.51
C4BPB	0	genome.wustl.edu	37	1	207268652	207268652	+	Frame_Shift_Del	DEL	T	T	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	207268652	207268652	T	-	DEL	C4BPB	ENST00000451804	human	ensembl	74_37	+1	known	frame_shift_del	c.396	p.L133fs	0.001	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C4BPB	HGNC	ENSG00000123843	tier1			47	0	0.00	14	2	12.50
WDR18	0	genome.wustl.edu	37	19	985925	985925	+	Frame_Shift_Del	DEL	A	A	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	985925	985925	A	-	DEL	WDR18	ENST00000251289	human	ensembl	74_37	+1	known	frame_shift_del	c.271	p.N91fs	0.989	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR18	HGNC	ENSG00000065268	tier1			57	0	0.00	14	2	12.50
C7orf25	0	genome.wustl.edu	37	7	42950004	42950004	+	Missense_Mutation	SNP	T	T	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	7	42950004	42950004	T	A	SNP	C7orf25	ENST00000431882	human	ensembl	74_37	-1	known	missense	c.670	p.I224F	0.947	pfam_DUF1308	pfam_DUF1308	-	no_errors	C7orf25	HGNC	ENSG00000136197	tier1	-	-	44	0	0.00	18	9	33.33
F2	0	genome.wustl.edu	37	11	46760630	46760630	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	46760630	46760630	G	T	SNP	F2	ENST00000311907	human	ensembl	74_37	+1	known	missense	c.1687	p.A563S	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Prothrombin/thrombin,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,pfam_Kringle,pfam_Thrombin_light_chain,pfam_GLA_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,superfamily_GLA_domain,smart_GLA_domain,smart_Kringle,smart_Peptidase_S1,pirsf_Prothrombin/thrombin,pfscan_GLA_domain,pfscan_Kringle,pfscan_Peptidase_S1,prints_Prothrombin/thrombin,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F2	HGNC	ENSG00000180210	tier1	-	-	59	0	0.00	24	3	11.11
USP15	0	genome.wustl.edu	37	12	62783616	62783616	+	Silent	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	62783616	62783616	C	T	SNP	USP15	ENST00000280377	human	ensembl	74_37	+1	known	silent	c.1692	p.H564	0.999	pfam_Peptidase_C19/C67,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19/C67	-	no_errors	USP15	HGNC	ENSG00000135655	tier1	rs144407646	-	64	0	0.00	13	3	18.75
TTN	0	genome.wustl.edu	37	2	179429661	179429661	+	Silent	SNP	T	T	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	2	179429661	179429661	T	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.73494	p.V24498	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	57	0	0.00	24	3	11.11
LRRC14B	0	genome.wustl.edu	37	5	192413	192413	+	Frame_Shift_Del	DEL	C	C	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	192413	192413	C	-	DEL	LRRC14B	ENST00000328278	human	ensembl	74_37	+1	novel	frame_shift_del	c.760	p.T256fs	0.004	NULL	NULL	-	no_errors	LRRC14B	HGNC	ENSG00000185028	tier1			33	0	0.00	11	3	21.43
HSPA6	0	genome.wustl.edu	37	1	161495396	161495396	+	Silent	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	161495396	161495396	G	T	SNP	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	silent	c.948	p.L316	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110	tier1	-	-	94	0	0.00	30	4	11.76
MYO16	0	genome.wustl.edu	37	13	109772771	109772771	+	Missense_Mutation	SNP	T	T	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	13	109772771	109772771	T	A	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.3426	p.D1142E	0.880	superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	tier1	-	-	48	0	0.00	9	3	25.00
SULT1B1	0	genome.wustl.edu	37	4	70596224	70596224	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	70596224	70596224	C	T	SNP	SULT1B1	ENST00000310613	human	ensembl	74_37	-1	known	missense	c.773	p.R258H	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1B1	HGNC	ENSG00000173597	tier1	rs142990488	GMAF=0.0005	47	0	0.00	6	4	40.00
COL4A6	0	genome.wustl.edu	37	X	107417804	107417804	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	X	107417804	107417804	C	A	SNP	COL4A6	ENST00000372216	human	ensembl	74_37	-1	known	missense	c.3007	p.A1003S	0.010	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	tier1	-	-	148	0	0.00	30	12	28.57
ZFHX3	0	genome.wustl.edu	37	16	72830503	72830503	+	Nonsense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	16	72830503	72830503	G	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	nonsense	c.6078	p.Y2026*	0.745	superfamily_Adenylate_cyclase-assoc_CAP_N	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	tier1	-	-	109	0	0.00	42	4	8.70
GSDMC	0	genome.wustl.edu	37	8	130777930	130777930	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	8	130777930	130777930	C	T	SNP	GSDMC	ENST00000276708	human	ensembl	74_37	-1	known	missense	c.514	p.D172N	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697	tier1	-	-	83	0	0.00	18	15	45.45
GALNT6	0	genome.wustl.edu	37	12	51785401	51785402	+	RNA	INS	-	-	AGCCGC			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	51785401	51785402	-	AGCCGC	INS	GALNT6	ENST00000603203	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.021:0.127	-	-	-	no_errors	GALNT6	HGNC	ENSG00000139629	tier1			NA	NA	NA	NA	NA	NA
ART1	0	genome.wustl.edu	37	11	3681130	3681130	+	Silent	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	3681130	3681130	G	A	SNP	ART1	ENST00000250693	human	ensembl	74_37	+1	known	silent	c.381	p.L127	1.000	pfam_ART	pfam_ART,prints_ART	-	no_errors	ART1	HGNC	ENSG00000129744	tier1	-	-	76	0	0.00	35	4	10.26
CLP1	0	genome.wustl.edu	37	11	57428885	57428910	+	In_Frame_Del	DEL	ATCCGGTTCATGGATCTGAAGTAGAG	ATCCGGTTCATGGATCTGAAGTAGAG	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	ATCCGGTTCATGGATCTGAAGTAGAG	ATCCGGTTCATGGATCTGAAGTAGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	57428885	57428910	ATCCGGTTCATGGATCTGAAGTAGAG	-	DEL	CLP1	ENST00000525602	human	ensembl	74_37	+1	known	in_frame_del	c.1255_1278	p.IRFMDLK*419in_frame_del	1.000:1.000:1.000:1.000:1.000:0.994:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.858:1.000:1.000:0.993:1.000:1.000:0.925	pfam_Pre-mRNA_cleavage_cplxII_Clp1	pfam_Pre-mRNA_cleavage_cplxII_Clp1,superfamily_P-loop_NTPase	-	no_errors	CLP1	HGNC	ENSG00000172409	tier1			NA	NA	NA	NA	NA	NA
PPP2R2C	0	genome.wustl.edu	37	4	6374262	6374262	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	6374262	6374262	C	T	SNP	PPP2R2C	ENST00000335585	human	ensembl	74_37	-1	known	missense	c.613	p.D205N	1.000	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2C	HGNC	ENSG00000074211	tier1	-	-	66	0	0.00	19	12	38.71
FLYWCH2	0	genome.wustl.edu	37	16	2949270	2949270	+	RNA	DEL	T	T	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	16	2949270	2949270	T	-	DEL	FLYWCH2	ENST00000572786	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	FLYWCH2	HGNC	ENSG00000162076	tier1			34	0	0.00	21	3	12.50
CCSAP	0	genome.wustl.edu	37	1	229460177	229460178	+	RNA	DEL	AA	AA	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	229460177	229460178	AA	-	DEL	CCSAP	ENST00000483092	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004:0.005	-	-	-	no_errors	CCSAP	HGNC	ENSG00000154429	tier1			49	0	0.00	14	2	12.50
SEMG1	0	genome.wustl.edu	37	20	43836290	43836290	+	Frame_Shift_Del	DEL	A	A	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	20	43836290	43836290	A	-	DEL	SEMG1	ENST00000372781	human	ensembl	74_37	+1	known	frame_shift_del	c.352	p.K118fs	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG1	HGNC	ENSG00000124233	tier1			56	0	0.00	18	2	10.00
ZIC2	0	genome.wustl.edu	37	13	100635008	100635010	+	In_Frame_Del	DEL	CCA	CCA	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	13	100635008	100635010	CCA	-	DEL	ZIC2	ENST00000376335	human	ensembl	74_37	+1	known	in_frame_del	c.690_692	p.H234in_frame_del	0.990:0.999:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC2	HGNC	ENSG00000043355	tier1			53	0	0.00	14	3	17.65
FAM98C	0	genome.wustl.edu	37	19	38899502	38899504	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	38899502	38899504	AAG	-	DEL	FAM98C	ENST00000252530	human	ensembl	74_37	+1	known	in_frame_del	c.1030_1032	p.K347in_frame_del	0.830:0.873:0.987	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244	tier1			71	0	0.00	35	6	14.63
TRIO	0	genome.wustl.edu	37	5	14465697	14465697	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	14465697	14465697	C	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.5711	p.P1904L	1.000	NULL	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	tier1	-	-	67	0	0.00	31	4	11.43
VCAN	0	genome.wustl.edu	37	5	82837721	82837721	+	Nonsense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	82837721	82837721	G	T	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	nonsense	c.8899	p.E2967*	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	tier1	-	-	63	0	0.00	14	3	17.65
B3GNT4	0	genome.wustl.edu	37	12	122692318	122692318	+	RNA	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	122692318	122692318	G	A	SNP	B3GNT4	ENST00000545141	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	B3GNT4	HGNC	ENSG00000176383	tier1	-	-	48	0	0.00	38	4	9.52
ENSG00000231437	0	genome.wustl.edu	37	1	112533797	112533797	+	RNA	SNP	T	T	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	112533797	112533797	T	A	SNP	ENSG00000231437	ENST00000438293	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-88H9.2	Clone_based_vega_gene	ENSG00000231437	tier1	-	-	51	0	0.00	26	4	13.33
MATN1	0	genome.wustl.edu	37	1	31189153	31189155	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	31189153	31189155	GCC	-	DEL	MATN1	ENST00000373765	human	ensembl	74_37	-1	known	in_frame_del	c.810_808	p.G270in_frame_del	0.054:0.022:0.004	NULL	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd_dom,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_VWF_A	-	no_errors	MATN1	HGNC	ENSG00000162510	tier1			50	0	0.00	16	2	11.11
ZNF486	0	genome.wustl.edu	37	19	20296806	20296806	+	Silent	SNP	C	C	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	20296806	20296806	C	G	SNP	ZNF486	ENST00000335117	human	ensembl	74_37	+1	known	silent	c.168	p.V56	0.087	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	tier1	-	-	93	0	0.00	36	7	16.28
VWA8	0	genome.wustl.edu	37	13	42393355	42393355	+	Frame_Shift_Del	DEL	T	T	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	13	42393355	42393355	T	-	DEL	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	frame_shift_del	c.1868	p.K623fs	1.000	superfamily_P-loop_NTPase	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763	tier1			84	0	0.00	22	2	8.33
BANP	0	genome.wustl.edu	37	16	88066823	88066823	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	16	88066823	88066823	A	G	SNP	BANP	ENST00000286122	human	ensembl	74_37	+1	known	missense	c.1148	p.Q383R	1.000	NULL	pfam_BEN_domain	-	no_errors	BANP	HGNC	ENSG00000172530	tier1	-	-	96	0	0.00	32	4	11.11
LMNB2	0	genome.wustl.edu	37	19	2435112	2435112	+	Silent	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	2435112	2435112	G	T	SNP	LMNB2	ENST00000325327	human	ensembl	74_37	-1	known	silent	c.742	p.R248	1.000	pfam_IF	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619	tier1	-	-	20	0	0.00	12	3	20.00
SMAD3	0	genome.wustl.edu	37	15	67358628	67358628	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	15	67358628	67358628	G	T	SNP	SMAD3	ENST00000327367	human	ensembl	74_37	+1	known	missense	c.136	p.G46W	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD3	HGNC	ENSG00000166949	tier1	-	-	50	0	0.00	25	4	13.79
TRAPPC11	0	genome.wustl.edu	37	4	184618903	184618904	+	Frame_Shift_Ins	INS	-	-	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	184618903	184618904	-	A	INS	TRAPPC11	ENST00000334690	human	ensembl	74_37	+1	known	frame_shift_ins	c.2766_2767	p.W922fs	0.002:0.999	NULL	pfam_Foie-gras_1,pfam_DUF1683_C	-	no_errors	TRAPPC11	HGNC	ENSG00000168538	tier1			47	0	0.00	14	2	12.50
PCDHB16	0	genome.wustl.edu	37	5	140562897	140562897	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	140562897	140562897	A	G	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	missense	c.763	p.S255G	0.820	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	tier1	-	-	47	0	0.00	25	4	13.79
GGTLC2	0	genome.wustl.edu	37	22	22989254	22989254	+	Silent	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	22	22989254	22989254	C	T	SNP	GGTLC2	ENST00000448514	human	ensembl	74_37	+1	known	silent	c.207	p.S69	0.996	pfam_GGT_peptidase,prints_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC2	HGNC	ENSG00000100121	tier1	rs138799771	-	260	1	0.38	178	26	12.68
MOB1B	0	genome.wustl.edu	37	4	71844995	71844995	+	Frame_Shift_Del	DEL	T	T	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	71844995	71844995	T	-	DEL	MOB1B	ENST00000309395	human	ensembl	74_37	+1	known	frame_shift_del	c.560	p.F189fs	1.000	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB1B	HGNC	ENSG00000173542	tier1			65	0	0.00	19	3	13.64
LRRFIP2	0	genome.wustl.edu	37	3	37190520	37190520	+	RNA	SNP	G	G	C			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	3	37190520	37190520	G	C	SNP	LRRFIP2	ENST00000482466	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	LRRFIP2	HGNC	ENSG00000093167	tier1	-	-	55	0	0.00	23	4	14.81
ENSG00000203849	0	genome.wustl.edu	37	1	142716762	142716762	+	RNA	SNP	C	C	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	142716762	142716762	C	A	SNP	ENSG00000203849	ENST00000595144	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849	tier1	-	-	67	0	0.00	20	9	31.03
VSTM4	0	genome.wustl.edu	37	10	50285341	50285341	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	10	50285341	50285341	C	T	SNP	VSTM4	ENST00000332853	human	ensembl	74_37	-1	known	missense	c.557	p.C186Y	0.949	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VSTM4	HGNC	ENSG00000165633	tier1	-	-	65	0	0.00	23	4	14.81
CCDC82	0	genome.wustl.edu	37	11	96119421	96119421	+	RNA	SNP	A	A	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	96119421	96119421	A	T	SNP	CCDC82	ENST00000524836	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CCDC82	HGNC	ENSG00000149231	tier1	-	-	36	0	0.00	11	4	25.00
BMPR1A	0	genome.wustl.edu	37	10	88649943	88649943	+	Silent	SNP	A	A	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	10	88649943	88649943	A	G	SNP	BMPR1A	ENST00000372037	human	ensembl	74_37	+1	known	silent	c.192	p.S64	1.000	pfam_Activin_rcpt	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR1A	HGNC	ENSG00000107779	tier1	-	-	77	0	0.00	40	4	9.09
MINK1	0	genome.wustl.edu	37	17	4787752	4787752	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	17	4787752	4787752	G	A	SNP	MINK1	ENST00000355280	human	ensembl	74_37	+1	known	missense	c.401	p.C134Y	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MINK1	HGNC	ENSG00000141503	tier1	-	-	50	0	0.00	12	3	20.00
ZNF347	0	genome.wustl.edu	37	19	53643945	53643946	+	Frame_Shift_Ins	INS	-	-	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	53643945	53643946	-	T	INS	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	frame_shift_ins	c.2139_2138	p.N713fs	0.000:0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937	tier1			77	0	0.00	50	5	9.09
AMD1	0	genome.wustl.edu	37	6	111208730	111208730	+	Frame_Shift_Del	DEL	A	A	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	6	111208730	111208730	A	-	DEL	AMD1	ENST00000368885	human	ensembl	74_37	+1	known	frame_shift_del	c.133	p.K45fs	1.000	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	-	no_errors	AMD1	HGNC	ENSG00000123505	tier1			72	0	0.00	14	2	12.50
GP6	0	genome.wustl.edu	37	19	55526104	55526107	+	Frame_Shift_Del	DEL	CAGA	CAGA	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	CAGA	CAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	55526104	55526107	CAGA	-	DEL	GP6	ENST00000310373	human	ensembl	74_37	-1	known	frame_shift_del	c.1209_1206	p.P404fs	0.009:0.011:0.014:0.015	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053	tier1			42	0	0.00	18	3	14.29
HMGB3	0	genome.wustl.edu	37	X	150156358	150156360	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	X	150156358	150156360	GAG	-	DEL	HMGB3	ENST00000325307	human	ensembl	74_37	+1	known	in_frame_del	c.574_576	p.E195in_frame_del	0.987:0.994:0.985	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGB3	HGNC	ENSG00000029993	tier1			46	0	0.00	12	2	14.29
KMT2D	0	genome.wustl.edu	37	12	49426727	49426727	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	49426727	49426727	G	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.11761	p.Q3921fs	0.012	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548	tier1			57	0	0.00	23	8	25.81
AOX1	0	genome.wustl.edu	37	2	201473949	201473949	+	RNA	DEL	A	A	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	2	201473949	201473949	A	-	DEL	AOX1	ENST00000465297	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	AOX1	HGNC	ENSG00000138356	tier1			43	0	0.00	24	3	11.11
AP4B1	0	genome.wustl.edu	37	1	114438788	114438788	+	RNA	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	114438788	114438788	C	T	SNP	AP4B1	ENST00000479285	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AP4B1	HGNC	ENSG00000134262	tier1	-	-	36	0	0.00	18	4	18.18
PCDHGA1	0	genome.wustl.edu	37	5	140711527	140711527	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	140711527	140711527	G	T	SNP	PCDHGA1	ENST00000517417	human	ensembl	74_37	+1	known	missense	c.1276	p.D426Y	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	tier1	-	-	46	0	0.00	15	4	21.05
FAM86B3P	0	genome.wustl.edu	37	8	8098246	8098246	+	RNA	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	8	8098246	8098246	G	T	SNP	FAM86B3P	ENST00000310542	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	FAM86B3P	HGNC	ENSG00000173295	tier1	-	-	76	0	0.00	29	8	21.62
IL27	0	genome.wustl.edu	37	16	28513296	28513296	+	Splice_Site	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	16	28513296	28513296	C	T	SNP	IL27	ENST00000356897	human	ensembl	74_37	-1	known	splice_site	c.462+1	e4+1	0.993	-	-	-	no_errors	IL27	HGNC	ENSG00000197272	tier1	-	-	64	0	0.00	31	6	16.22
DTX3	0	genome.wustl.edu	37	12	58002927	58002937	+	In_Frame_Del	DEL	GATGACTGAAG	GATGACTGAAG	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	GATGACTGAAG	GATGACTGAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	58002927	58002937	GATGACTGAAG	-	DEL	DTX3	ENST00000551632	human	ensembl	74_37	+1	known	in_frame_del	c.1045_1053	p.DD*349in_frame_del	0.987:0.979:0.973:1.000:1.000:1.000:1.000:1.000:0.982	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3	HGNC	ENSG00000178498	tier1			NA	NA	NA	NA	NA	NA
OGFR	0	genome.wustl.edu	37	20	61441851	61441851	+	Nonsense_Mutation	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	20	61441851	61441851	G	A	SNP	OGFR	ENST00000290291	human	ensembl	74_37	+1	known	nonsense	c.399	p.W133*	1.000	pfam_OGF_rcpt	pfam_OGF_rcpt,pfam_OGF_rcpt_rpt	-	no_errors	OGFR	HGNC	ENSG00000060491	tier1	-	-	100	1	0.99	39	4	9.30
TYR	0	genome.wustl.edu	37	11	88911205	88911205	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	88911205	88911205	G	C	SNP	TYR	ENST00000263321	human	ensembl	74_37	+1	known	missense	c.84	p.K28N	0.999	NULL	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498	tier1	-	-	45	0	0.00	14	6	30.00
KLC2	0	genome.wustl.edu	37	11	66031619	66031619	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	66031619	66031619	C	T	SNP	KLC2	ENST00000316924	human	ensembl	74_37	+1	known	missense	c.1045	p.R349W	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC2	HGNC	ENSG00000174996	tier1	-	-	28	0	0.00	16	3	15.79
UQCRC2	0	genome.wustl.edu	37	16	21973817	21973817	+	Silent	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	16	21973817	21973817	G	T	SNP	UQCRC2	ENST00000268379	human	ensembl	74_37	+1	known	silent	c.369	p.V123	0.987	pfam_Pept_M16_N,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	UQCRC2	HGNC	ENSG00000140740	tier1	-	-	95	0	0.00	36	4	10.00
MAP4	0	genome.wustl.edu	37	3	47958559	47958559	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	3	47958559	47958559	G	T	SNP	MAP4	ENST00000360240	human	ensembl	74_37	-1	known	missense	c.758	p.S253Y	0.051	NULL	pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849	tier1	-	-	57	0	0.00	20	3	13.04
HDAC9	0	genome.wustl.edu	37	7	18688256	18688256	+	Frame_Shift_Del	DEL	C	C	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	7	18688256	18688256	C	-	DEL	HDAC9	ENST00000441542	human	ensembl	74_37	+1	known	frame_shift_del	c.1417	p.Q473fs	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052	tier1			63	0	0.00	18	2	10.00
CYR61	0	genome.wustl.edu	37	1	86047194	86047194	+	Silent	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	86047194	86047194	C	T	SNP	CYR61	ENST00000451137	human	ensembl	74_37	+1	known	silent	c.210	p.C70	1.000	pfam_IGFBP-like,smart_IGFBP-like,pirsf_IGFBP_CNN	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CYR61	HGNC	ENSG00000142871	tier1	-	-	53	0	0.00	6	3	33.33
KCNMA1	0	genome.wustl.edu	37	10	78943284	78943284	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	10	78943284	78943284	C	T	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	missense	c.703	p.A235T	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	tier1	-	-	53	0	0.00	16	3	15.00
TFAP2C	0	genome.wustl.edu	37	20	55208622	55208622	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	20	55208622	55208622	G	T	SNP	TFAP2C	ENST00000201031	human	ensembl	74_37	+1	known	missense	c.800	p.R267I	1.000	pfam_TF_AP2_C,prints_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_gamma	-	no_errors	TFAP2C	HGNC	ENSG00000087510	tier1	-	-	64	0	0.00	21	4	16.00
ZNF142	0	genome.wustl.edu	37	2	219507332	219507332	+	Nonsense_Mutation	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	2	219507332	219507332	G	A	SNP	ZNF142	ENST00000411696	human	ensembl	74_37	-1	known	nonsense	c.3907	p.Q1303*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568	tier1	-	-	60	0	0.00	34	4	10.53
GCN1L1	0	genome.wustl.edu	37	12	120572452	120572452	+	Frame_Shift_Del	DEL	C	C	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	120572452	120572452	C	-	DEL	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	frame_shift_del	c.7087	p.V2363fs	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	tier1			100	0	0.00	25	3	10.71
ABLIM2	0	genome.wustl.edu	37	4	8079400	8079400	+	Silent	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	8079400	8079400	G	A	SNP	ABLIM2	ENST00000447017	human	ensembl	74_37	-1	known	silent	c.630	p.I210	0.957	pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995	tier1	-	-	162	0	0.00	54	9	14.29
PCDHA5	0	genome.wustl.edu	37	5	140202596	140202596	+	Silent	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	140202596	140202596	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	silent	c.1236	p.L412	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	tier1	-	-	165	1	0.60	33	18	35.29
WDR89	0	genome.wustl.edu	37	14	64066442	64066442	+	Silent	SNP	A	A	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	14	64066442	64066442	A	T	SNP	WDR89	ENST00000267522	human	ensembl	74_37	-1	known	silent	c.219	p.L73	0.760	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR89	HGNC	ENSG00000140006	tier1	-	-	78	0	0.00	24	4	14.29
EXOSC2	0	genome.wustl.edu	37	9	133579172	133579172	+	RNA	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	9	133579172	133579172	C	T	SNP	EXOSC2	ENST00000430138	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EXOSC2	HGNC	ENSG00000130713	tier1	-	-	42	0	0.00	34	4	10.53
C5orf42	0	genome.wustl.edu	37	5	37227487	37227487	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	37227487	37227487	C	T	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	missense	c.1379	p.G460D	0.004	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	tier1	-	-	90	0	0.00	26	3	10.34
NR4A1	0	genome.wustl.edu	37	12	52435632	52435632	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	52435632	52435632	A	G	SNP	NR4A1	ENST00000545748	human	ensembl	74_37	+1	known	missense	c.79	p.R27G	0.902	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Nuc_orp_HMR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR4A1	HGNC	ENSG00000123358	tier1	-	-	44	0	0.00	12	3	20.00
AKAP4	0	genome.wustl.edu	37	X	49963378	49963378	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	X	49963378	49963378	C	T	SNP	AKAP4	ENST00000358526	human	ensembl	74_37	-1	known	missense	c.53	p.R18H	0.989	smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	tier1	-	-	67	0	0.00	25	4	13.79
DCAF4L2	0	genome.wustl.edu	37	8	88885852	88885852	+	Silent	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	8	88885852	88885852	C	T	SNP	DCAF4L2	ENST00000319675	human	ensembl	74_37	-1	known	silent	c.348	p.P116	0.946	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	tier1	-	-	60	0	0.00	29	4	12.12
ATP11A	0	genome.wustl.edu	37	13	113527954	113527954	+	Frame_Shift_Del	DEL	A	A	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	13	113527954	113527954	A	-	DEL	ATP11A	ENST00000375630	human	ensembl	74_37	+1	known	frame_shift_del	c.3125	p.Y1042fs	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11A	HGNC	ENSG00000068650	tier1			63	0	0.00	13	2	13.33
SLC44A2	0	genome.wustl.edu	37	19	10753122	10753122	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	10753122	10753122	G	A	SNP	SLC44A2	ENST00000335757	human	ensembl	74_37	+1	known	missense	c.2009	p.C670Y	1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A2	HGNC	ENSG00000129353	tier1	-	-	60	0	0.00	33	4	10.81
LIPE-AS1	0	genome.wustl.edu	37	19	42989258	42989258	+	RNA	SNP	T	T	C			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	42989258	42989258	T	C	SNP	LIPE-AS1	ENST00000457234	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	LIPE-AS1	HGNC	ENSG00000213904	tier1	-	-	96	0	0.00	27	4	12.90
ENSG00000221156	0	genome.wustl.edu	37	7	35882541	35882542	+	RNA	DEL	TA	TA	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	7	35882541	35882542	TA	-	DEL	ENSG00000221156	ENST00000408229	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC007551.1	Clone_based_ensembl_gene	ENSG00000221156	tier1			43	0	0.00	12	2	14.29
BRCA2	0	genome.wustl.edu	37	13	32929041	32929041	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	13	32929041	32929041	G	A	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.7051	p.A2351T	0.007	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	tier1	rs80358930	-	75	0	0.00	13	3	18.75
TPX2	0	genome.wustl.edu	37	20	30381794	30381794	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	20	30381794	30381794	G	T	SNP	TPX2	ENST00000340513	human	ensembl	74_37	+1	known	missense	c.1761	p.K587N	1.000	NULL	pfam_TPX2_central_dom,pfam_Aurora-A-bd,pfam_TPX2_dom_C	-	no_errors	TPX2	HGNC	ENSG00000088325	tier1	-	-	74	0	0.00	17	3	15.00
HOXC10	0	genome.wustl.edu	37	12	54383304	54383304	+	RNA	DEL	T	T	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	54383304	54383304	T	-	DEL	HOXC10	ENST00000511575	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	HOXC10	HGNC	ENSG00000180818	tier1			58	0	0.00	15	2	11.76
ANO3	0	genome.wustl.edu	37	11	26677985	26677985	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	26677985	26677985	G	-	DEL	ANO3	ENST00000256737	human	ensembl	74_37	+1	known	frame_shift_del	c.2720	p.W907fs	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO3	HGNC	ENSG00000134343	tier1			84	0	0.00	17	2	10.53
ARG2	0	genome.wustl.edu	37	14	68117433	68117433	+	Silent	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	14	68117433	68117433	G	A	SNP	ARG2	ENST00000261783	human	ensembl	74_37	+1	known	silent	c.861	p.G287	0.687	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	-	no_errors	ARG2	HGNC	ENSG00000081181	tier1	-	-	27	0	0.00	9	7	43.75
USH2A	0	genome.wustl.edu	37	1	216246595	216246595	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	216246595	216246595	C	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.5620	p.V1874I	1.000	superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	tier1	-	-	44	0	0.00	11	4	26.67
FBN3	0	genome.wustl.edu	37	19	8193949	8193949	+	Silent	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	8193949	8193949	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	silent	c.2259	p.P753	0.646	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	tier1	rs60853419	GMAF=0.0005	79	0	0.00	33	20	36.36
CLN3	0	genome.wustl.edu	37	16	28495386	28495386	+	Missense_Mutation	SNP	T	T	C			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	16	28495386	28495386	T	C	SNP	CLN3	ENST00000359984	human	ensembl	74_37	-1	known	missense	c.731	p.E244G	0.077	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	-	no_errors	CLN3	HGNC	ENSG00000188603	tier1	-	-	82	0	0.00	29	4	12.12
STAU2	0	genome.wustl.edu	37	8	74621369	74621369	+	Silent	SNP	T	T	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	8	74621369	74621369	T	A	SNP	STAU2	ENST00000524300	human	ensembl	74_37	-1	known	silent	c.12	p.P4	1.000	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU2	HGNC	ENSG00000040341	tier1	-	-	77	0	0.00	27	3	10.00
DIP2B	0	genome.wustl.edu	37	12	51112505	51112505	+	Silent	SNP	T	T	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	51112505	51112505	T	G	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	silent	c.2865	p.A955	0.986	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	tier1	-	-	76	0	0.00	28	7	20.00
TSPAN19	0	genome.wustl.edu	37	12	85421771	85421771	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	85421771	85421771	G	A	SNP	TSPAN19	ENST00000532498	human	ensembl	74_37	-1	known	missense	c.170	p.S57F	0.013	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN19	HGNC	ENSG00000231738	tier1	-	-	91	0	0.00	165	180	52.17
AK9	0	genome.wustl.edu	37	6	109906341	109906342	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	6	109906341	109906342	TC	-	DEL	AK9	ENST00000424296	human	ensembl	74_37	-1	known	frame_shift_del	c.2099_2098	p.E700fs	0.825:0.777	superfamily_P-loop_NTPase	pfam_Adenylate_kin,pfam_YHS_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	AK9	HGNC	ENSG00000155085	tier1			107	0	0.00	23	3	11.54
NRXN3	0	genome.wustl.edu	37	14	80328258	80328258	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	14	80328258	80328258	A	G	SNP	NRXN3	ENST00000335750	human	ensembl	74_37	+1	known	missense	c.3137	p.K1046R	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	tier1	rs200832810	GMAF=0	17	0	0.00	6	4	36.36
ZNF486	0	genome.wustl.edu	37	19	20296831	20296831	+	Silent	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	20296831	20296831	C	T	SNP	ZNF486	ENST00000335117	human	ensembl	74_37	+1	known	silent	c.193	p.L65	0.043	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	tier1	-	-	94	0	0.00	47	10	17.54
HEATR4	0	genome.wustl.edu	37	14	73962072	73962072	+	Missense_Mutation	SNP	T	T	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	14	73962072	73962072	T	G	SNP	HEATR4	ENST00000334988	human	ensembl	74_37	-1	known	missense	c.2645	p.K882T	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105	tier1	-	-	76	0	0.00	28	3	9.68
TERF1	0	genome.wustl.edu	37	8	73921284	73921286	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	8	73921284	73921286	GAG	-	DEL	TERF1	ENST00000276603	human	ensembl	74_37	+1	known	in_frame_del	c.163_165	p.E58in_frame_del	0.121:0.130:0.144	pirsf_Telomere_repeat-bd-1/2	pfam_Telomere_rpt-bd_fac_dimer_dom,pfam_SANT/Myb,superfamily_Telomere_rpt-bd_fac_dimer_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	-	no_errors	TERF1	HGNC	ENSG00000147601	tier1			46	0	0.00	16	2	11.11
BDNF	0	genome.wustl.edu	37	11	27678795	27678796	+	RNA	INS	-	-	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	27678795	27678796	-	A	INS	BDNF	ENST00000584049	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.810:0.128	-	-	-	no_errors	BDNF	HGNC	ENSG00000176697	tier1			61	0	0.00	25	3	10.71
ENSG00000222001	0	genome.wustl.edu	37	2	233877919	233877919	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	2	233877919	233877919	C	T	SNP	ENSG00000222001	ENST00000409905	human	ensembl	74_37	+1	putative	missense	c.188	p.T63I	0.000	NULL	NULL	-	no_errors	AC106876.2	Clone_based_vega_gene	ENSG00000222001	tier1	-	-	93	0	0.00	44	4	8.33
KIAA2018	0	genome.wustl.edu	37	3	113377201	113377201	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	3	113377201	113377201	C	T	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.3328	p.E1110K	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542	tier1	-	-	34	0	0.00	7	5	41.67
DDX58	0	genome.wustl.edu	37	9	32466417	32466417	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	9	32466417	32466417	G	T	SNP	DDX58	ENST00000379883	human	ensembl	74_37	-1	known	missense	c.2208	p.S736R	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DEATH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201	tier1	-	-	88	0	0.00	34	4	10.53
EPB41L1	0	genome.wustl.edu	37	20	34795631	34795631	+	RNA	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	20	34795631	34795631	C	T	SNP	EPB41L1	ENST00000479336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EPB41L1	HGNC	ENSG00000088367	tier1	-	-	57	0	0.00	18	3	14.29
UBP1	0	genome.wustl.edu	37	3	33481266	33481266	+	Silent	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	3	33481266	33481266	G	T	SNP	UBP1	ENST00000283628	human	ensembl	74_37	-1	known	silent	c.75	p.G25	1.000	NULL	pfam_CP2,superfamily_SAM/pointed	-	no_errors	UBP1	HGNC	ENSG00000153560	tier1	-	-	35	0	0.00	9	3	25.00
MSH3	0	genome.wustl.edu	37	5	79968152	79968152	+	Silent	SNP	A	A	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	79968152	79968152	A	T	SNP	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	silent	c.882	p.V294	0.004	pfam_DNA_mismatch_repair_MutS-lik_N,superfamily_DNA_mismatch_repair_MutS_N	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	tier1	-	-	87	0	0.00	21	10	32.26
MDN1	0	genome.wustl.edu	37	6	90406215	90406215	+	Missense_Mutation	SNP	A	A	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	6	90406215	90406215	A	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.9247	p.W3083R	0.999	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	tier1	-	-	71	0	0.00	15	4	21.05
ELANE	0	genome.wustl.edu	37	19	855742	855742	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	855742	855742	G	-	DEL	ELANE	ENST00000263621	human	ensembl	74_37	+1	known	frame_shift_del	c.545	p.R182fs	0.109	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	ELANE	HGNC	ENSG00000197561	tier1			64	0	0.00	19	2	9.52
ZNF486	0	genome.wustl.edu	37	19	20296824	20296824	+	Silent	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	20296824	20296824	C	T	SNP	ZNF486	ENST00000335117	human	ensembl	74_37	+1	known	silent	c.186	p.I62	0.080	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	tier1	-	-	85	0	0.00	43	9	17.31
ARFGAP2	0	genome.wustl.edu	37	11	47193866	47193866	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	47193866	47193866	A	G	SNP	ARFGAP2	ENST00000524782	human	ensembl	74_37	-1	known	missense	c.638	p.I213T	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182	tier1	-	-	94	0	0.00	22	8	26.67
SMR3B	0	genome.wustl.edu	37	4	71255546	71255546	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	71255546	71255546	C	A	SNP	SMR3B	ENST00000304915	human	ensembl	74_37	+1	known	missense	c.221	p.P74Q	0.047	NULL	NULL	-	no_errors	SMR3B	HGNC	ENSG00000171201	tier1	-	-	160	0	0.00	34	20	37.04
RAET1E-AS1	0	genome.wustl.edu	37	6	150184442	150184442	+	RNA	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	6	150184442	150184442	G	A	SNP	RAET1E-AS1	ENST00000596229	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-244K5.8	Clone_based_vega_gene	ENSG00000268592	tier1	-	-	53	0	0.00	16	3	15.79
LMBR1L	0	genome.wustl.edu	37	12	49504411	49504411	+	RNA	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	49504411	49504411	G	A	SNP	LMBR1L	ENST00000548983	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LMBR1L	HGNC	ENSG00000139636	tier1	-	-	80	0	0.00	36	4	10.00
CDH18	0	genome.wustl.edu	37	5	19473754	19473754	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	19473754	19473754	G	A	SNP	CDH18	ENST00000274170	human	ensembl	74_37	-1	known	missense	c.1954	p.R652W	0.827	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH18	HGNC	ENSG00000145526	tier1	-	-	69	0	0.00	20	9	31.03
STT3A	0	genome.wustl.edu	37	11	125482602	125482602	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	125482602	125482602	G	T	SNP	STT3A	ENST00000392708	human	ensembl	74_37	+1	known	missense	c.1325	p.S442I	0.987	pfam_Oligo_trans_STT3	pfam_Oligo_trans_STT3	-	no_errors	STT3A	HGNC	ENSG00000134910	tier1	-	-	61	0	0.00	22	3	12.00
NAPA	0	genome.wustl.edu	37	19	47993012	47993012	+	Silent	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	47993012	47993012	G	A	SNP	NAPA	ENST00000263354	human	ensembl	74_37	-1	known	silent	c.742	p.L248	0.683	prints_NSF_attach	prints_NSF_attach	-	no_errors	NAPA	HGNC	ENSG00000105402	tier1	-	-	24	0	0.00	11	3	21.43
PUS3	0	genome.wustl.edu	37	11	125766086	125766086	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	125766086	125766086	G	T	SNP	PUS3	ENST00000227474	human	ensembl	74_37	-1	known	missense	c.94	p.Q32K	0.992	NULL	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	-	no_errors	PUS3	HGNC	ENSG00000110060	tier1	-	-	87	0	0.00	37	4	9.76
TTLL5	0	genome.wustl.edu	37	14	76420882	76420882	+	RNA	DEL	T	T	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	14	76420882	76420882	T	-	DEL	TTLL5	ENST00000554972	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	TTLL5	HGNC	ENSG00000119685	tier1			53	0	0.00	25	4	13.79
CPZ	0	genome.wustl.edu	37	4	8601254	8601254	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	8601254	8601254	G	A	SNP	CPZ	ENST00000515606	human	ensembl	74_37	+1	known	missense	c.163	p.A55T	0.001	NULL	NULL	-	no_errors	CPZ	HGNC	ENSG00000109625	tier1	-	-	68	0	0.00	39	4	9.30
NPTX1	0	genome.wustl.edu	37	17	78447240	78447240	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	17	78447240	78447240	C	A	SNP	NPTX1	ENST00000306773	human	ensembl	74_37	-1	known	missense	c.657	p.Q219H	1.000	NULL	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX1	HGNC	ENSG00000171246	tier1	-	-	90	0	0.00	24	3	11.11
LMO7	0	genome.wustl.edu	37	13	76381810	76381810	+	Missense_Mutation	SNP	T	T	C			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	13	76381810	76381810	T	C	SNP	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	missense	c.1547	p.F516S	1.000	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153	tier1	-	-	65	0	0.00	13	3	18.75
