Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PNMA3	0	genome.wustl.edu	37	X	152226127	152226127	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	X	152226127	152226127	G	C	SNP	PNMA3	ENST00000370264	human	ensembl	74_37	+1	known	missense	c.715	p.V239L	0.039	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PNMA3	HGNC	ENSG00000183837	tier1	-	-	44	0	0.00	28	24	46.15
CA2	0	genome.wustl.edu	37	8	86386014	86386014	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	8	86386014	86386014	G	T	SNP	CA2	ENST00000285379	human	ensembl	74_37	+1	known	missense	c.325	p.V109L	0.997	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA2	HGNC	ENSG00000104267	tier1	-	-	28	0	0.00	34	4	10.53
ARID3B	0	genome.wustl.edu	37	15	74889073	74889073	+	RNA	SNP	T	T	C			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	15	74889073	74889073	T	C	SNP	ARID3B	ENST00000563567	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ARID3B	HGNC	ENSG00000179361	tier1	-	-	36	0	0.00	29	4	12.12
ZBTB25	0	genome.wustl.edu	37	14	64957138	64957138	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	14	64957138	64957138	G	T	SNP	ZBTB25	ENST00000394715	human	ensembl	74_37	-1	known	missense	c.114	p.H38Q	0.996	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB25	HGNC	ENSG00000089775	tier1	-	-	32	0	0.00	40	4	9.09
GPHB5	0	genome.wustl.edu	37	14	63784386	63784386	+	RNA	SNP	C	C	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	14	63784386	63784386	C	A	SNP	GPHB5	ENST00000314140	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GPHB5	HGNC	ENSG00000179600	tier1	-	-	63	0	0.00	60	22	26.83
KMT2C	0	genome.wustl.edu	37	7	151962257	151962257	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	7	151962257	151962257	C	T	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	silent	c.1050	p.P350	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger,pfscan_Znf_RING	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609	tier1	rs62478357	-	63	0	0.00	78	8	9.30
MYO6	0	genome.wustl.edu	37	6	76599937	76599937	+	Missense_Mutation	SNP	A	A	C			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	6	76599937	76599937	A	C	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	missense	c.2822	p.E941A	1.000	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	tier1	-	-	32	0	0.00	15	10	40.00
NOX4	0	genome.wustl.edu	37	11	89069056	89069056	+	Silent	SNP	G	G	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	11	89069056	89069056	G	T	SNP	NOX4	ENST00000413594	human	ensembl	74_37	-1	known	silent	c.1636	p.R546	0.986	pfam_Fe_red_NAD-bd_6	pfam_Fe_red_NAD-bd_6,pfam_Fe3_Rdtase_TM_dom,pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX4	HGNC	ENSG00000086991	tier1	-	-	33	0	0.00	43	4	8.51
ZMYND8	0	genome.wustl.edu	37	20	45867410	45867410	+	RNA	DEL	A	A	-			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	20	45867410	45867410	A	-	DEL	ZMYND8	ENST00000468376	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZMYND8	HGNC	ENSG00000101040	tier1			50	0	0.00	48	5	9.43
LCE1F	0	genome.wustl.edu	37	1	152748994	152748994	+	Silent	SNP	A	A	G			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	1	152748994	152748994	A	G	SNP	LCE1F	ENST00000334371	human	ensembl	74_37	+1	known	silent	c.147	p.G49	0.848	NULL	NULL	-	no_errors	LCE1F	HGNC	ENSG00000240386	tier1	-	-	82	0	0.00	89	11	11.00
C11orf49	0	genome.wustl.edu	37	11	47183083	47183083	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	11	47183083	47183083	G	T	SNP	C11orf49	ENST00000378615	human	ensembl	74_37	+1	known	missense	c.908	p.R303L	1.000	NULL	NULL	-	no_errors	C11orf49	HGNC	ENSG00000149179	tier1	-	-	41	0	0.00	38	15	28.30
SH3PXD2B	0	genome.wustl.edu	37	5	171766855	171766855	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	5	171766855	171766855	C	T	SNP	SH3PXD2B	ENST00000311601	human	ensembl	74_37	-1	known	silent	c.1254	p.P418	0.991	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac-type,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705	tier1	rs115528822	GMAF=0.0005	25	0	0.00	20	17	45.95
OR4S1	0	genome.wustl.edu	37	11	48328655	48328655	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	11	48328655	48328655	A	G	SNP	OR4S1	ENST00000319988	human	ensembl	74_37	+1	known	missense	c.881	p.N294S	0.191	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555	tier1	-	-	15	0	0.00	6	16	72.73
C10orf113	0	genome.wustl.edu	37	10	21414843	21414843	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	10	21414843	21414843	C	T	SNP	C10orf113	ENST00000534331	human	ensembl	74_37	-1	known	missense	c.377	p.G126D	1.000	NULL	NULL	-	no_errors	C10orf113	HGNC	ENSG00000204683	tier1	-	-	42	0	0.00	4	20	83.33
LCE1F	0	genome.wustl.edu	37	1	152748991	152748991	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	1	152748991	152748991	C	T	SNP	LCE1F	ENST00000334371	human	ensembl	74_37	+1	known	silent	c.144	p.S48	0.786	NULL	NULL	-	no_errors	LCE1F	HGNC	ENSG00000240386	tier1	-	-	85	0	0.00	89	11	11.00
ENSG00000221295	0	genome.wustl.edu	37	8	43415867	43415867	+	RNA	SNP	G	G	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	8	43415867	43415867	G	A	SNP	ENSG00000221295	ENST00000408368	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AC134698.1	Clone_based_ensembl_gene	ENSG00000221295	tier1	-	-	54	0	0.00	19	22	53.66
FAM98C	0	genome.wustl.edu	37	19	38899502	38899504	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	19	38899502	38899504	AAG	-	DEL	FAM98C	ENST00000252530	human	ensembl	74_37	+1	known	in_frame_del	c.1030_1032	p.K347in_frame_del	0.830:0.873:0.987	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244	tier1			50	0	0.00	42	5	10.64
BTK	0	genome.wustl.edu	37	X	100608059	100608059	+	RNA	DEL	A	A	-			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	X	100608059	100608059	A	-	DEL	BTK	ENST00000470069	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	BTK	HGNC	ENSG00000010671	tier1			19	0	0.00	28	6	17.65
SLC26A3	0	genome.wustl.edu	37	7	107420137	107420137	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	7	107420137	107420137	C	T	SNP	SLC26A3	ENST00000340010	human	ensembl	74_37	-1	known	silent	c.1383	p.L461	0.998	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A3	HGNC	ENSG00000091138	tier1	-	-	24	0	0.00	24	4	14.29
PPAP2B	0	genome.wustl.edu	37	1	56978868	56978869	+	RNA	INS	-	-	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	1	56978868	56978869	-	A	INS	PPAP2B	ENST00000459962	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PPAP2B	HGNC	ENSG00000162407	tier1			30	0	0.00	20	3	13.04
KCP	0	genome.wustl.edu	37	7	128520456	128520456	+	RNA	SNP	G	G	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	7	128520456	128520456	G	A	SNP	KCP	ENST00000297801	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	KCP	HGNC	ENSG00000135253	tier1	-	-	55	0	0.00	59	18	23.38
PCDH15	0	genome.wustl.edu	37	10	55591267	55591267	+	Missense_Mutation	SNP	A	A	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	10	55591267	55591267	A	T	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.4010	p.I1337N	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	tier1	-	-	42	0	0.00	18	3	14.29
PUS7	0	genome.wustl.edu	37	7	105142968	105142968	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	7	105142968	105142968	G	C	SNP	PUS7	ENST00000356362	human	ensembl	74_37	-1	known	missense	c.629	p.A210G	1.000	superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7	HGNC	ENSG00000091127	tier1	-	-	80	0	0.00	52	13	20.00
OGDHL	0	genome.wustl.edu	37	10	50947867	50947867	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	10	50947867	50947867	G	A	SNP	OGDHL	ENST00000374103	human	ensembl	74_37	-1	known	missense	c.2159	p.A720V	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444	tier1	-	-	41	0	0.00	21	3	12.50
KCNA7	0	genome.wustl.edu	37	19	49573848	49573848	+	Silent	SNP	T	T	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	19	49573848	49573848	T	A	SNP	KCNA7	ENST00000221444	human	ensembl	74_37	-1	known	silent	c.843	p.R281	0.729	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848	tier1	-	-	40	0	0.00	8	11	57.89
AGBL1	0	genome.wustl.edu	37	15	86822903	86822903	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	15	86822903	86822903	C	T	SNP	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	silent	c.1971	p.G657	0.215	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	tier1	-	-	46	0	0.00	29	30	50.85
HRCT1	0	genome.wustl.edu	37	9	35906627	35906627	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	9	35906627	35906627	C	T	SNP	HRCT1	ENST00000354323	human	ensembl	74_37	+1	known	missense	c.343	p.R115C	0.006	NULL	NULL	-	no_errors	HRCT1	HGNC	ENSG00000196196	tier1	-	-	35	0	0.00	40	4	9.09
LOC101927832	0	genome.wustl.edu	37	3	142720221	142720222	+	RNA	INS	-	-	GGACAACGA			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	3	142720221	142720222	-	GGACAACGA	INS	LOC101927832	ENST00000595248	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.015	-	-	-	no_errors	RP11-372E1.6	Clone_based_vega_gene	ENSG00000241570	tier1			NA	NA	NA	NA	NA	NA
ENSG00000271011	0	genome.wustl.edu	37	2	179442293	179442293	+	RNA	DEL	A	A	-			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	2	179442293	179442293	A	-	DEL	ENSG00000271011	ENST00000604215	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	RP11-171I2.5	Clone_based_vega_gene	ENSG00000271011	tier1			23	0	0.00	30	3	9.09
SERPINF1	0	genome.wustl.edu	37	17	1675236	1675236	+	Silent	SNP	G	G	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	17	1675236	1675236	G	T	SNP	SERPINF1	ENST00000254722	human	ensembl	74_37	+1	known	silent	c.510	p.T170	0.007	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINF1	HGNC	ENSG00000132386	tier1	-	-	26	0	0.00	14	3	17.65
MT1G	0	genome.wustl.edu	37	16	56701214	56701214	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	16	56701214	56701214	C	A	SNP	MT1G	ENST00000568675	human	ensembl	74_37	-1	putative	missense	c.104	p.G35V	0.029	pfam_Metalthion_sfam_euk	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom	-	no_errors	MT1G	HGNC	ENSG00000125144	tier1	-	-	72	0	0.00	48	6	11.11
SLAMF8	0	genome.wustl.edu	37	1	159799923	159799923	+	Missense_Mutation	SNP	T	T	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	1	159799923	159799923	T	A	SNP	SLAMF8	ENST00000289707	human	ensembl	74_37	+1	known	missense	c.308	p.V103E	0.778	NULL	pfscan_Ig-like_dom	-	no_errors	SLAMF8	HGNC	ENSG00000158714	tier1	-	-	37	0	0.00	24	6	20.00
LRP3	0	genome.wustl.edu	37	19	33697152	33697152	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	19	33697152	33697152	C	T	SNP	LRP3	ENST00000253193	human	ensembl	74_37	+1	known	silent	c.1476	p.A492	0.004	NULL	pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP3	HGNC	ENSG00000130881	tier1	-	-	37	0	0.00	45	4	8.16
CEL	0	genome.wustl.edu	37	9	135945997	135945997	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	9	135945997	135945997	C	T	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	missense	c.1445	p.T482I	0.994	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	tier1	rs201677850	-	42	0	0.00	37	8	17.78
SP4	0	genome.wustl.edu	37	7	21470337	21470337	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	7	21470337	21470337	C	T	SNP	SP4	ENST00000222584	human	ensembl	74_37	+1	known	silent	c.1554	p.A518	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP4	HGNC	ENSG00000105866	tier1	-	-	25	0	0.00	25	4	13.79
PPP1R3A	0	genome.wustl.edu	37	7	113518500	113518500	+	Missense_Mutation	SNP	T	T	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	7	113518500	113518500	T	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.2647	p.R883W	0.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	tier1	-	-	27	0	0.00	13	15	53.57
C1orf63	0	genome.wustl.edu	37	1	25570199	25570199	+	RNA	SNP	T	T	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	1	25570199	25570199	T	A	SNP	C1orf63	ENST00000569495	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf63	HGNC	ENSG00000117616	tier1	-	-	24	0	0.00	21	6	22.22
CCDC129	0	genome.wustl.edu	37	7	31683190	31683198	+	In_Frame_Del	DEL	GAATGCACT	GAATGCACT	-			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	GAATGCACT	GAATGCACT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	7	31683190	31683198	GAATGCACT	-	DEL	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	in_frame_del	c.2284_2292	p.ECT762in_frame_del	0.004:0.017:0.011:0.008:0.001:0.000:0.018:0.029:0.025	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347	tier1			NA	NA	NA	NA	NA	NA
MEGF9	0	genome.wustl.edu	37	9	123476543	123476548	+	In_Frame_Del	DEL	CGGCGG	CGGCGG	-			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	CGGCGG	CGGCGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	9	123476543	123476548	CGGCGG	-	DEL	MEGF9	ENST00000426959	human	ensembl	74_37	-1	known	in_frame_del	c.70_65	p.AA22in_frame_del	0.255:0.243:0.247:0.263:0.993:0.998	NULL	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF9	HGNC	ENSG00000106780	tier1			NA	NA	NA	NA	NA	NA
INPPL1	0	genome.wustl.edu	37	11	71943350	71943350	+	Missense_Mutation	SNP	A	A	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	11	71943350	71943350	A	T	SNP	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	missense	c.1682	p.H561L	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458	tier1	-	-	31	0	0.00	3	19	86.36
CCDC168	0	genome.wustl.edu	37	13	103386924	103386924	+	Frame_Shift_Del	DEL	T	T	-			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	13	103386924	103386924	T	-	DEL	CCDC168	ENST00000322527	human	ensembl	74_37	-1	known	frame_shift_del	c.2236	p.I746fs	0.005	NULL	NULL	-	no_errors	CCDC168	HGNC	ENSG00000175820	tier1			35	0	0.00	11	2	15.38
GPR133	0	genome.wustl.edu	37	12	131439034	131439034	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	12	131439034	131439034	C	T	SNP	GPR133	ENST00000261654	human	ensembl	74_37	+1	known	silent	c.24	p.C8	0.004	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452	tier1	-	-	57	0	0.00	28	4	12.50
PTEN	0	genome.wustl.edu	37	10	89720855	89720859	+	Frame_Shift_Del	DEL	TACTT	TACTT	-			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	TACTT	TACTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	10	89720855	89720859	TACTT	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	frame_shift_del	c.1006_1010	p.Y336fs	1.000:1.000:0.996:1.000:1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	tier1			NA	NA	NA	NA	NA	NA
CYLD	0	genome.wustl.edu	37	16	50785608	50785608	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	16	50785608	50785608	G	T	SNP	CYLD	ENST00000311559	human	ensembl	74_37	+1	known	missense	c.598	p.D200Y	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Peptidase_C19/C67,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19/C67	-	no_errors	CYLD	HGNC	ENSG00000083799	tier1	-	-	40	0	0.00	16	3	15.00
ARPC1B	0	genome.wustl.edu	37	7	98984121	98984121	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	7	98984121	98984121	C	T	SNP	ARPC1B	ENST00000445924	human	ensembl	74_37	+1	known	missense	c.70	p.P24S	0.000	NULL	NULL	-	no_errors	ARPC1B	HGNC	ENSG00000130429	tier1	-	-	54	0	0.00	36	4	10.00
LPPR1	0	genome.wustl.edu	37	9	104086318	104086318	+	Silent	SNP	G	G	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	9	104086318	104086318	G	A	SNP	LPPR1	ENST00000374874	human	ensembl	74_37	+1	known	silent	c.957	p.A319	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR1	Uniprot_gn	ENSG00000148123	tier1	-	-	32	0	0.00	45	10	18.18
CNGB3	0	genome.wustl.edu	37	8	87679208	87679208	+	Missense_Mutation	SNP	T	T	C			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	8	87679208	87679208	T	C	SNP	CNGB3	ENST00000320005	human	ensembl	74_37	-1	known	missense	c.797	p.Y266C	0.003	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289	tier1	-	-	32	0	0.00	14	17	54.84
ENSG00000216197	0	genome.wustl.edu	37	21	43720386	43720387	+	RNA	DEL	GT	GT	-			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	21	43720386	43720387	GT	-	DEL	ENSG00000216197	ENST00000401378	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	AP001623.1	Clone_based_ensembl_gene	ENSG00000216197	tier1			35	0	0.00	25	3	10.71
TRIM26	0	genome.wustl.edu	37	6	30154038	30154038	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	6	30154038	30154038	G	A	SNP	TRIM26	ENST00000437089	human	ensembl	74_37	-1	known	missense	c.1235	p.T412M	0.020	superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM26	HGNC	ENSG00000234127	tier1	-	-	36	0	0.00	4	25	86.21
GSN	0	genome.wustl.edu	37	9	124074857	124074857	+	RNA	DEL	A	A	-			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	9	124074857	124074857	A	-	DEL	GSN	ENST00000485767	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GSN	HGNC	ENSG00000148180	tier1			19	0	0.00	24	3	11.11
PPAPDC3	0	genome.wustl.edu	37	9	134183431	134183431	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	9	134183431	134183431	C	T	SNP	PPAPDC3	ENST00000372264	human	ensembl	74_37	+1	known	silent	c.573	p.A191	0.977	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAPDC3	HGNC	ENSG00000160539	tier1	-	-	63	0	0.00	63	18	22.22
OR13G1	0	genome.wustl.edu	37	1	247835974	247835974	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	1	247835974	247835974	A	G	SNP	OR13G1	ENST00000359688	human	ensembl	74_37	-1	known	missense	c.370	p.C124R	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR13G1	HGNC	ENSG00000197437	tier1	-	-	24	0	0.00	26	22	45.83
ATF1	0	genome.wustl.edu	37	12	51203362	51203362	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	12	51203362	51203362	C	T	SNP	ATF1	ENST00000262053	human	ensembl	74_37	+1	known	silent	c.318	p.S106	0.995	prints_Leuzip_CREB	pfam_bZIP,pfam_Coactivator_CBP_pKID,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	ATF1	HGNC	ENSG00000123268	tier1	-	-	42	0	0.00	29	3	9.38
MRPL42	0	genome.wustl.edu	37	12	93894747	93894748	+	RNA	INS	-	-	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	12	93894747	93894748	-	A	INS	MRPL42	ENST00000552938	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.002:0.008	-	-	-	no_errors	MRPL42	HGNC	ENSG00000198015	tier1			10	0	0.00	4	5	55.56
DCT	0	genome.wustl.edu	37	13	95131426	95131426	+	Silent	SNP	G	G	C			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	13	95131426	95131426	G	C	SNP	DCT	ENST00000446125	human	ensembl	74_37	-1	known	silent	c.84	p.V28	1.000	NULL	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166	tier1	-	-	18	0	0.00	34	8	19.05
GPR113	0	genome.wustl.edu	37	2	26536280	26536280	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	2	26536280	26536280	C	T	SNP	GPR113	ENST00000333478	human	ensembl	74_37	-1	known	missense	c.841	p.D281N	0.629	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR113	HGNC	ENSG00000173567	tier1	-	-	50	0	0.00	39	12	23.53
ZW10	0	genome.wustl.edu	37	11	113604439	113604439	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	11	113604439	113604439	C	T	SNP	ZW10	ENST00000200135	human	ensembl	74_37	-1	known	missense	c.2317	p.A773T	0.997	NULL	pfam_RZZ-complex_Zw10	-	no_errors	ZW10	HGNC	ENSG00000086827	tier1	-	-	40	0	0.00	3	31	91.18
FAM57B	0	genome.wustl.edu	37	16	30036684	30036684	+	Silent	SNP	G	G	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	16	30036684	30036684	G	A	SNP	FAM57B	ENST00000380495	human	ensembl	74_37	-1	known	silent	c.645	p.Y215	1.000	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	FAM57B	HGNC	ENSG00000149926	tier1	-	-	17	0	0.00	6	3	33.33
PHF6	0	genome.wustl.edu	37	X	133527620	133527620	+	Missense_Mutation	SNP	T	T	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	X	133527620	133527620	T	A	SNP	PHF6	ENST00000394292	human	ensembl	74_37	+1	known	missense	c.330	p.H110Q	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF6	HGNC	ENSG00000156531	tier1	-	-	57	0	0.00	30	25	45.45
HIVEP2	0	genome.wustl.edu	37	6	143092313	143092313	+	Missense_Mutation	SNP	T	T	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	6	143092313	143092313	T	A	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	missense	c.3563	p.H1188L	0.024	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	tier1	-	-	26	0	0.00	32	4	11.11
NUP188	0	genome.wustl.edu	37	9	131744924	131744924	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	9	131744924	131744924	G	A	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.1613	p.S538N	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	tier1	-	-	19	0	0.00	22	28	56.00
KCNJ12	0	genome.wustl.edu	37	17	21318837	21318837	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	17	21318837	21318837	C	T	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	silent	c.183	p.D61	0.958	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185	tier1	rs61514986	-	56	0	0.00	93	24	20.34
AGK	0	genome.wustl.edu	37	7	141315307	141315307	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	7	141315307	141315307	C	T	SNP	AGK	ENST00000355413	human	ensembl	74_37	+1	known	silent	c.460	p.L154	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	AGK	HGNC	ENSG00000006530	tier1	-	-	76	0	0.00	36	30	45.45
PAPD5	0	genome.wustl.edu	37	16	50269006	50269006	+	RNA	SNP	G	G	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	16	50269006	50269006	G	A	SNP	PAPD5	ENST00000562717	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PAPD5	HGNC	ENSG00000121274	tier1	-	-	23	0	0.00	17	3	15.00
ERCC8	0	genome.wustl.edu	37	5	60200672	60200672	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	5	60200672	60200672	G	T	SNP	ERCC8	ENST00000265038	human	ensembl	74_37	-1	known	missense	c.428	p.T143K	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ERCC8	HGNC	ENSG00000049167	tier1	-	-	39	0	0.00	39	4	9.30
CDH4	0	genome.wustl.edu	37	20	60318791	60318791	+	Silent	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	20	60318791	60318791	C	T	SNP	CDH4	ENST00000360469	human	ensembl	74_37	+1	known	silent	c.342	p.D114	0.001	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242	tier1	-	-	15	0	0.00	7	10	58.82
TRPM3	0	genome.wustl.edu	37	9	73151413	73151413	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	9	73151413	73151413	G	T	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.4661	p.P1554H	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	tier1	-	-	31	0	0.00	38	4	9.52
SLC4A7	0	genome.wustl.edu	37	3	27453211	27453211	+	Missense_Mutation	SNP	T	T	C			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	3	27453211	27453211	T	C	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	missense	c.1688	p.N563S	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867	tier1	-	-	69	0	0.00	85	12	12.37
ZC3H13	0	genome.wustl.edu	37	13	46619628	46619628	+	Silent	SNP	T	T	C			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	13	46619628	46619628	T	C	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	silent	c.15	p.R5	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	tier1	-	-	31	0	0.00	18	3	14.29
CUL1	0	genome.wustl.edu	37	7	148494904	148494904	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	7	148494904	148494904	G	C	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	missense	c.1900	p.D634H	1.000	pfam_Cullin_N,superfamily_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130	tier1	-	-	59	0	0.00	32	38	54.29
ENSG00000232783	0	genome.wustl.edu	37	3	197838274	197838274	+	RNA	DEL	A	A	-			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	3	197838274	197838274	A	-	DEL	ENSG00000232783	ENST00000411596	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AC073135.3	Clone_based_vega_gene	ENSG00000232783	tier1			11	0	0.00	26	6	18.75
RASAL2	0	genome.wustl.edu	37	1	178269251	178269251	+	Missense_Mutation	SNP	T	T	G			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	1	178269251	178269251	T	G	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.455	p.L152R	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	tier1	-	-	41	0	0.00	28	20	41.67
MAP2K2	0	genome.wustl.edu	37	19	4099304	4099304	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	19	4099304	4099304	C	T	SNP	MAP2K2	ENST00000262948	human	ensembl	74_37	-1	known	missense	c.814	p.A272T	0.995	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K2	HGNC	ENSG00000126934	tier1	-	-	55	0	0.00	47	29	38.16
MARS	0	genome.wustl.edu	37	12	57883288	57883288	+	Missense_Mutation	SNP	C	C	G			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	12	57883288	57883288	C	G	SNP	MARS	ENST00000262027	human	ensembl	74_37	+1	known	missense	c.361	p.L121V	0.998	superfamily_Glutathione-S-Trfase_C-like	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986	tier1	-	-	22	0	0.00	4	7	63.64
DRAM1	0	genome.wustl.edu	37	12	102302067	102302067	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	12	102302067	102302067	C	T	SNP	DRAM1	ENST00000258534	human	ensembl	74_37	+1	known	missense	c.446	p.P149L	1.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	DRAM1	HGNC	ENSG00000136048	tier1	-	-	28	0	0.00	13	9	40.91
EFCAB2	0	genome.wustl.edu	37	1	245133623	245133624	+	Frame_Shift_Ins	INS	-	-	CCTCC			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	1	245133623	245133624	-	CCTCC	INS	EFCAB2	ENST00000366522	human	ensembl	74_37	+1	known	frame_shift_ins	c.199_200	p.R69fs	0.000:0.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB2	HGNC	ENSG00000203666	tier1			NA	NA	NA	NA	NA	NA
LOC101929847	0	genome.wustl.edu	37	15	84873329	84873329	+	RNA	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	15	84873329	84873329	C	T	SNP	LOC101929847	ENST00000561015	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.219	-	-	-	no_errors	AC103965.1	Clone_based_vega_gene	ENSG00000225151	tier1	-	-	13	0	0.00	13	7	35.00
CEL	0	genome.wustl.edu	37	9	135945988	135945988	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	9	135945988	135945988	A	G	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	missense	c.1436	p.Q479R	0.831	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	tier1	rs201074543	-	48	0	0.00	40	5	11.11
CNTNAP2	0	genome.wustl.edu	37	7	148112884	148112884	+	RNA	SNP	C	C	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	7	148112884	148112884	C	A	SNP	CNTNAP2	ENST00000463592	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.958	-	-	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	tier1	rs200052441	-	46	0	0.00	35	4	10.26
SRRM2	0	genome.wustl.edu	37	16	2812100	2812100	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	16	2812100	2812100	G	C	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	missense	c.1571	p.R524T	0.931	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	tier1	-	-	24	0	0.00	26	8	23.53
ZFPL1	0	genome.wustl.edu	37	11	64852291	64852291	+	Nonsense_Mutation	SNP	C	C	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	11	64852291	64852291	C	T	SNP	ZFPL1	ENST00000525509	human	ensembl	74_37	+1	putative	nonsense	c.121	p.R41*	0.000	NULL	NULL	-	no_errors	ZFPL1	HGNC	ENSG00000162300	tier1	-	-	39	0	0.00	0	22	100.00
MT1G	0	genome.wustl.edu	37	16	56701216	56701216	+	Nonsense_Mutation	SNP	G	G	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	16	56701216	56701216	G	T	SNP	MT1G	ENST00000568675	human	ensembl	74_37	-1	putative	nonsense	c.102	p.C34*	0.025	pfam_Metalthion_sfam_euk	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom	-	no_errors	MT1G	HGNC	ENSG00000125144	tier1	-	-	72	0	0.00	49	7	12.50
KANK2	0	genome.wustl.edu	37	19	11303728	11303729	+	Frame_Shift_Ins	INS	-	-	C			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	19	11303728	11303729	-	C	INS	KANK2	ENST00000432929	human	ensembl	74_37	-1	known	frame_shift_ins	c.1028_1027	p.A343fs	0.984:0.975	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256	tier1			33	0	0.00	32	5	13.51
FGFR1	0	genome.wustl.edu	37	8	38283652	38283652	+	Silent	SNP	G	G	A			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	8	38283652	38283652	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	74_37	-1	known	silent	c.826	p.L276	1.000	pirsf_FGF_rcpt_fam,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	tier1	-	-	26	0	0.00	31	4	11.43
BAZ1B	0	genome.wustl.edu	37	7	72856562	72856562	+	Silent	SNP	G	G	T			TCGA-WK-A8XS-01A-11D-A37C-09	TCGA-WK-A8XS-10E-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e69af2f0-d12a-43e8-9ad7-52c69c4dd6cf	4942810b-91b3-42b0-b774-741d0c2aed08	7	72856562	72856562	G	T	SNP	BAZ1B	ENST00000339594	human	ensembl	74_37	-1	known	silent	c.4416	p.A1472	0.001	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	tier1	-	-	36	0	0.00	28	5	14.71
