Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PON3	0	genome.wustl.edu	37	7	94992147	94992147	+	Silent	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	7	94992147	94992147	G	A	SNP	PON3	ENST00000265627	human	ensembl	74_37	-1	known	silent	c.702	p.V234	1.000	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase2	-	no_errors	PON3	HGNC	ENSG00000105852	tier1	-	-	56	0	0.00	52	9	14.75
DCHS2	0	genome.wustl.edu	37	4	155243560	155243560	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	4	155243560	155243560	G	A	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.2734	p.P912S	0.780	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	tier1	-	-	71	0	0.00	38	24	38.71
USP24	0	genome.wustl.edu	37	1	55567345	55567345	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	1	55567345	55567345	G	A	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	missense	c.4577	p.S1526L	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402	tier1	-	-	72	0	0.00	35	30	46.15
MT-ND6	0	genome.wustl.edu	37	MT	14384	14384	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	MT	14384	14384	G	A	SNP	MT-ND6	ENST00000361681	human	ensembl	74_37	-1	known	missense	c.290	p.A97V	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	-	no_errors	MT-ND6	HGNC	ENSG00000198695	tier1	-	-	254	0	0.00	38	8	17.39
C9orf62	0	genome.wustl.edu	37	9	138235268	138235268	+	Silent	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	9	138235268	138235268	C	T	SNP	C9orf62	ENST00000320778	human	ensembl	74_37	+1	putative	silent	c.24	p.T8	0.000	NULL	NULL	-	no_errors	C9orf62	HGNC	ENSG00000178243	tier1	-	-	19	0	0.00	5	4	44.44
C12orf42	0	genome.wustl.edu	37	12	103699894	103699894	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	12	103699894	103699894	G	C	SNP	C12orf42	ENST00000378113	human	ensembl	74_37	-1	known	missense	c.489	p.N163K	0.051	NULL	NULL	-	no_errors	C12orf42	HGNC	ENSG00000179088	tier1	-	-	91	0	0.00	63	12	16.00
ENSG00000228302	0	genome.wustl.edu	37	10	12289026	12289028	+	RNA	DEL	TCC	TCC	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	10	12289026	12289028	TCC	-	DEL	ENSG00000228302	ENST00000421657	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001:0.002	-	-	-	no_errors	RP11-186N15.3	Clone_based_vega_gene	ENSG00000228302	tier1			11	0	0.00	5	4	44.44
UBE2I	0	genome.wustl.edu	37	16	1358609	1358628	+	RNA	DEL	TGAGGGAGGGAGGGAATTAG	TGAGGGAGGGAGGGAATTAG	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	TGAGGGAGGGAGGGAATTAG	TGAGGGAGGGAGGGAATTAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	16	1358609	1358628	TGAGGGAGGGAGGGAATTAG	-	DEL	UBE2I	ENST00000339021	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.003:0.001:0.001:0.000:0.000:0.001:0.000:0.001:0.001:0.004:0.006:0.007:0.005:0.003:0.001:0.000:0.000:0.000:0.000	-	-	-	no_errors	UBE2I	HGNC	ENSG00000103275	tier1			NA	NA	NA	NA	NA	NA
ENSG00000233002	0	genome.wustl.edu	37	17	15638587	15638587	+	RNA	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	17	15638587	15638587	G	A	SNP	ENSG00000233002	ENST00000434017	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	AC005324.6	Clone_based_vega_gene	ENSG00000233002	tier1	-	-	23	0	0.00	31	8	20.51
TTC7A	0	genome.wustl.edu	37	2	47300982	47300982	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	2	47300982	47300982	G	C	SNP	TTC7A	ENST00000319190	human	ensembl	74_37	+1	known	missense	c.2497	p.V833L	0.003	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7A	HGNC	ENSG00000068724	tier1	-	-	23	0	0.00	9	9	50.00
WDR41	0	genome.wustl.edu	37	5	76745618	76745618	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	5	76745618	76745618	G	T	SNP	WDR41	ENST00000296679	human	ensembl	74_37	-1	known	missense	c.664	p.Q222K	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR41	HGNC	ENSG00000164253	tier1	-	-	81	0	0.00	37	4	9.76
ACLY	0	genome.wustl.edu	37	17	40048663	40048663	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	17	40048663	40048663	C	T	SNP	ACLY	ENST00000352035	human	ensembl	74_37	-1	known	missense	c.1639	p.E547K	1.000	pfam_CoA-bd,smart_CoA-bd,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473	tier1	-	-	33	0	0.00	19	20	51.28
IFT46	0	genome.wustl.edu	37	11	118427748	118427750	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	11	118427748	118427750	TCT	-	DEL	IFT46	ENST00000264020	human	ensembl	74_37	-1	known	in_frame_del	c.211_209	p.K70in_frame_del	0.041:0.879:0.998	NULL	pfam_Intraflagellar_transp_cmplxB	-	no_errors	IFT46	HGNC	ENSG00000118096	tier1			39	0	0.00	19	2	9.52
ZNF831	0	genome.wustl.edu	37	20	57829203	57829203	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	20	57829203	57829203	C	A	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.4439	p.T1480N	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	tier1	-	-	28	0	0.00	15	7	31.82
CNTRL	0	genome.wustl.edu	37	9	123924170	123924170	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	9	123924170	123924170	A	G	SNP	CNTRL	ENST00000238341	human	ensembl	74_37	+1	known	missense	c.5126	p.N1709S	0.995	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNTRL	HGNC	ENSG00000119397	tier1	-	-	66	0	0.00	59	20	25.32
HELZ2	0	genome.wustl.edu	37	20	62203295	62203295	+	RNA	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	20	62203295	62203295	G	A	SNP	HELZ2	ENST00000479540	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.747	-	-	-	no_errors	HELZ2	HGNC	ENSG00000130589	tier1	rs75418499	-	11	0	0.00	10	5	33.33
HKDC1	0	genome.wustl.edu	37	10	71025434	71025434	+	Silent	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	10	71025434	71025434	C	T	SNP	HKDC1	ENST00000354624	human	ensembl	74_37	+1	known	silent	c.2466	p.C822	0.996	pfam_Hexokinase_C,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510	tier1	-	-	63	0	0.00	42	4	8.70
RB1	0	genome.wustl.edu	37	13	49027153	49027156	+	Frame_Shift_Del	DEL	AAAC	AAAC	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	AAAC	AAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	13	49027153	49027156	AAAC	-	DEL	RB1	ENST00000267163	human	ensembl	74_37	+1	known	frame_shift_del	c.1720_1723	p.K574fs	1.000:1.000:1.000:1.000	superfamily_Cyclin-like	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1			100	0	0.00	42	36	46.15
OR7G1	0	genome.wustl.edu	37	19	9225933	9225933	+	Nonsense_Mutation	SNP	G	G	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	19	9225933	9225933	G	T	SNP	OR7G1	ENST00000293614	human	ensembl	74_37	-1	known	nonsense	c.507	p.C169*	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7G1	HGNC	ENSG00000161807	tier1	-	-	46	0	0.00	23	17	42.50
LRP2	0	genome.wustl.edu	37	2	170148813	170148813	+	Missense_Mutation	SNP	A	A	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	2	170148813	170148813	A	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.719	p.V240D	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	tier1	-	-	40	0	0.00	10	22	68.75
RNF213	0	genome.wustl.edu	37	17	78282903	78282903	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	17	78282903	78282903	A	G	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.2587	p.K863E	0.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	tier1	-	-	41	0	0.00	12	26	68.42
FGF5	0	genome.wustl.edu	37	4	81189526	81189526	+	RNA	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	4	81189526	81189526	C	T	SNP	FGF5	ENST00000503413	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FGF5	HGNC	ENSG00000138675	tier1	-	-	43	0	0.00	51	5	8.93
TLE4	0	genome.wustl.edu	37	9	82323521	82323521	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	9	82323521	82323521	G	T	SNP	TLE4	ENST00000376520	human	ensembl	74_37	+1	known	missense	c.1179	p.R393S	0.998	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE4	HGNC	ENSG00000106829	tier1	-	-	52	0	0.00	39	4	9.30
ZRANB3	0	genome.wustl.edu	37	2	136029367	136029367	+	Missense_Mutation	SNP	C	C	G			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	2	136029367	136029367	C	G	SNP	ZRANB3	ENST00000264159	human	ensembl	74_37	-1	known	missense	c.1177	p.A393P	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988	tier1	-	-	57	0	0.00	18	30	62.50
CDK2	0	genome.wustl.edu	37	12	56365351	56365351	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	12	56365351	56365351	C	T	SNP	CDK2	ENST00000266970	human	ensembl	74_37	+1	known	missense	c.839	p.A280V	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK2	HGNC	ENSG00000123374	tier1	-	-	33	0	0.00	45	4	8.16
ZMYM1	0	genome.wustl.edu	37	1	35580503	35580503	+	Silent	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	1	35580503	35580503	C	T	SNP	ZMYM1	ENST00000359858	human	ensembl	74_37	+1	novel	silent	c.3072	p.I1024	1.000	superfamily_RNaseH-like_dom	pfam_Znf_MYM,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_TRASH_dom	-	no_errors	ZMYM1	HGNC	ENSG00000197056	tier1	-	-	78	0	0.00	63	36	36.36
MKI67	0	genome.wustl.edu	37	10	129905112	129905113	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	10	129905112	129905113	TG	-	DEL	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	frame_shift_del	c.4992_4991	p.T1664fs	0.000:0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	tier1			46	0	0.00	25	3	10.71
RN7SL319P	0	genome.wustl.edu	37	15	76077689	76077690	+	RNA	INS	-	-	G			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	15	76077689	76077690	-	G	INS	RN7SL319P	ENST00000480656	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.981:0.985	-	-	-	no_errors	RN7SL319P	HGNC	ENSG00000241807	tier1			24	0	0.00	24	6	20.00
NLRP12	0	genome.wustl.edu	37	19	54327234	54327234	+	Silent	SNP	C	C	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	19	54327234	54327234	C	A	SNP	NLRP12	ENST00000324134	human	ensembl	74_37	-1	known	silent	c.195	p.G65	0.034	pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405	tier1	-	-	71	0	0.00	39	7	15.22
SLC16A11	0	genome.wustl.edu	37	17	6946879	6946879	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	17	6946879	6946879	C	A	SNP	SLC16A11	ENST00000308009	human	ensembl	74_37	-1	known	missense	c.26	p.R9M	0.009	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A11	HGNC	ENSG00000174326	tier1	-	-	11	0	0.00	11	4	26.67
HUNK	0	genome.wustl.edu	37	21	33318455	33318455	+	Missense_Mutation	SNP	T	T	C			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	21	33318455	33318455	T	C	SNP	HUNK	ENST00000270112	human	ensembl	74_37	+1	known	missense	c.718	p.Y240H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HUNK	HGNC	ENSG00000142149	tier1	-	-	61	0	0.00	59	24	28.57
GAPVD1	0	genome.wustl.edu	37	9	128025963	128025989	+	Splice_Site	DEL	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	9	128025963	128025989	CAGCACTCCATCTGTAGGTATGTCTGT	-	DEL	GAPVD1	ENST00000469528	human	ensembl	74_37	+1	known	splice_site_del	c.NULL	NULL	1.000:1.000:1.000:1.000:1.000:0.999:0.996:0.980:0.970:0.963:0.961:0.959:0.952:0.948:0.947:0.950:0.961:0.966:0.966:0.969:0.974:0.982:0.984:0.985:0.984:0.985:0.993	-	-	-	no_errors	GAPVD1	HGNC	ENSG00000165219	tier1			NA	NA	NA	NA	NA	NA
RNASE2	0	genome.wustl.edu	37	14	21424381	21424381	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	14	21424381	21424381	C	A	SNP	RNASE2	ENST00000304625	human	ensembl	74_37	+1	known	missense	c.451	p.P151T	0.000	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE2	HGNC	ENSG00000169385	tier1	-	-	64	0	0.00	58	6	9.38
PRAMENP	0	genome.wustl.edu	37	22	22348852	22348852	+	RNA	SNP	G	G	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	22	22348852	22348852	G	T	SNP	PRAMENP	ENST00000337471	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PRAMENP	HGNC	ENSG00000197549	tier1	-	-	21	0	0.00	17	7	29.17
ENSG00000236986	0	genome.wustl.edu	37	9	134008391	134008392	+	RNA	INS	-	-	TT			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	9	134008391	134008392	-	TT	INS	ENSG00000236986	ENST00000587264	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	RP11-544A12.4	Clone_based_vega_gene	ENSG00000236986	tier1			11	0	0.00	5	3	37.50
STAG3L5P-PVRIG2P-PILRB	0	genome.wustl.edu	37	7	99943552	99943553	+	RNA	INS	-	-	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	7	99943552	99943553	-	T	INS	STAG3L5P-PVRIG2P-PILRB	ENST00000310771	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors	STAG3L5P-PVRIG2P-PILRB	HGNC	ENSG00000272752	tier1			32	0	0.00	20	3	13.04
USH2A	0	genome.wustl.edu	37	1	216251697	216251697	+	Missense_Mutation	SNP	A	A	C			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	1	216251697	216251697	A	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.5306	p.L1769R	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Laminin_G,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	tier1	-	-	57	0	0.00	8	17	68.00
FSHR	0	genome.wustl.edu	37	2	49190918	49190918	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	2	49190918	49190918	G	T	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	missense	c.1042	p.P348T	1.000	pfam_GnHR_TM	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820	tier1	-	-	55	0	0.00	46	4	8.00
PICALM	0	genome.wustl.edu	37	11	85714464	85714464	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	11	85714464	85714464	G	T	SNP	PICALM	ENST00000393346	human	ensembl	74_37	-1	known	missense	c.838	p.Q280K	1.000	pfam_ANTH_dom	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	PICALM	HGNC	ENSG00000073921	tier1	-	-	28	0	0.00	31	4	11.43
DNAH9	0	genome.wustl.edu	37	17	11584066	11584066	+	Frame_Shift_Del	DEL	A	A	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	17	11584066	11584066	A	-	DEL	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	frame_shift_del	c.3603	p.K1203fs	0.379	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	tier1			43	0	0.00	26	3	10.34
ANGEL2	0	genome.wustl.edu	37	1	213188755	213188755	+	RNA	DEL	T	T	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	1	213188755	213188755	T	-	DEL	ANGEL2	ENST00000481918	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANGEL2	HGNC	ENSG00000174606	tier1			25	0	0.00	8	6	42.86
ACADVL	0	genome.wustl.edu	37	17	7123240	7123241	+	RNA	INS	-	-	GGGCGTGCAGGACGC			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	17	7123240	7123241	-	GGGCGTGCAGGACGC	INS	ACADVL	ENST00000577857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ACADVL	HGNC	ENSG00000072778	tier1			NA	NA	NA	NA	NA	NA
ENSG00000216166	0	genome.wustl.edu	37	3	183520323	183520324	+	RNA	INS	-	-	TA			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	3	183520323	183520324	-	TA	INS	ENSG00000216166	ENST00000401347	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC131160.1	Clone_based_ensembl_gene	ENSG00000216166	tier1			9	0	0.00	4	5	55.56
GOLGA5	0	genome.wustl.edu	37	14	93264116	93264116	+	Nonsense_Mutation	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	14	93264116	93264116	C	T	SNP	GOLGA5	ENST00000163416	human	ensembl	74_37	+1	known	nonsense	c.334	p.R112*	0.998	NULL	pfam_Golgin_subfamily_A_member_5,superfamily_Prefoldin	-	no_errors	GOLGA5	HGNC	ENSG00000066455	tier1	-	-	27	0	0.00	34	4	10.53
ITGA7	0	genome.wustl.edu	37	12	56079995	56079995	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	12	56079995	56079995	C	A	SNP	ITGA7	ENST00000257880	human	ensembl	74_37	-1	known	missense	c.3419	p.G1140V	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424	tier1	-	-	38	0	0.00	32	4	11.11
SPACA3	0	genome.wustl.edu	37	17	31324480	31324480	+	Missense_Mutation	SNP	C	C	G			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	17	31324480	31324480	C	G	SNP	SPACA3	ENST00000269053	human	ensembl	74_37	+1	known	missense	c.520	p.L174V	0.544	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	SPACA3	HGNC	ENSG00000141316	tier1	-	-	25	0	0.00	12	10	45.45
OLFM3	0	genome.wustl.edu	37	1	102269445	102269445	+	RNA	DEL	A	A	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	1	102269445	102269445	A	-	DEL	OLFM3	ENST00000462354	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.075	-	-	-	no_errors	OLFM3	HGNC	ENSG00000118733	tier1			17	0	0.00	23	2	8.00
TPR	0	genome.wustl.edu	37	1	186302508	186302508	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	1	186302508	186302508	G	A	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.5201	p.P1734L	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	tier1	-	-	76	0	0.00	7	40	85.11
ATRX	0	genome.wustl.edu	37	X	76888728	76888728	+	Nonsense_Mutation	SNP	T	T	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	X	76888728	76888728	T	A	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	nonsense	c.5101	p.K1701*	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	51	0	0.00	40	30	42.86
BCMO1	0	genome.wustl.edu	37	16	81323975	81323975	+	Silent	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	16	81323975	81323975	C	T	SNP	BCMO1	ENST00000258168	human	ensembl	74_37	+1	known	silent	c.1437	p.V479	0.992	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697	tier1	-	-	67	0	0.00	51	7	12.07
ENSG00000244306	0	genome.wustl.edu	37	14	19891124	19891124	+	RNA	SNP	T	T	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	14	19891124	19891124	T	A	SNP	ENSG00000244306	ENST00000547285	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.023	-	-	-	no_errors	CTD-2314B22.3	Clone_based_vega_gene	ENSG00000244306	tier1	-	-	31	0	0.00	31	13	29.55
GPR135	0	genome.wustl.edu	37	14	59931123	59931123	+	Silent	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	14	59931123	59931123	G	A	SNP	GPR135	ENST00000395116	human	ensembl	74_37	-1	known	silent	c.822	p.G274	0.958	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR135	HGNC	ENSG00000181619	tier1	-	-	15	0	0.00	11	4	26.67
KEL	0	genome.wustl.edu	37	7	142638486	142638486	+	Missense_Mutation	SNP	C	C	G			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	7	142638486	142638486	C	G	SNP	KEL	ENST00000355265	human	ensembl	74_37	-1	known	missense	c.2052	p.K684N	0.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	KEL	HGNC	ENSG00000197993	tier1	-	-	47	0	0.00	21	13	38.24
SLC20A1	0	genome.wustl.edu	37	2	113414763	113414763	+	Silent	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	2	113414763	113414763	C	T	SNP	SLC20A1	ENST00000272542	human	ensembl	74_37	+1	known	silent	c.723	p.F241	1.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A1	HGNC	ENSG00000144136	tier1	-	-	23	0	0.00	23	20	46.51
TP53	0	genome.wustl.edu	37	17	7574025	7574025	+	Frame_Shift_Del	DEL	C	C	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	17	7574025	7574025	C	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.1002	p.R335fs	0.879	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			30	0	0.00	7	10	58.82
EMR3	0	genome.wustl.edu	37	19	14752409	14752409	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	19	14752409	14752409	G	A	SNP	EMR3	ENST00000253673	human	ensembl	74_37	-1	known	missense	c.1070	p.T357I	0.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CD97	-	no_errors	EMR3	HGNC	ENSG00000131355	tier1	-	-	39	0	0.00	13	22	62.86
WIPI1	0	genome.wustl.edu	37	17	66453573	66453581	+	RNA	DEL	GCCCGGGAA	GCCCGGGAA	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	GCCCGGGAA	GCCCGGGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	17	66453573	66453581	GCCCGGGAA	-	DEL	WIPI1	ENST00000586815	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000:1.000:0.999:0.975:0.979:0.991:0.991:0.998	-	-	-	no_errors	WIPI1	HGNC	ENSG00000070540	tier1			NA	NA	NA	NA	NA	NA
TRRAP	0	genome.wustl.edu	37	7	98602905	98602905	+	Silent	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	7	98602905	98602905	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	silent	c.10645	p.L3549	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	tier1	-	-	36	0	0.00	18	9	33.33
PCDHGA7	0	genome.wustl.edu	37	5	140763249	140763249	+	Silent	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	5	140763249	140763249	G	A	SNP	PCDHGA7	ENST00000518325	human	ensembl	74_37	+1	known	silent	c.783	p.L261	0.001	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537	tier1	-	-	66	0	0.00	42	4	8.70
CHST10	0	genome.wustl.edu	37	2	101014550	101014550	+	Nonsense_Mutation	SNP	C	C	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	2	101014550	101014550	C	A	SNP	CHST10	ENST00000542617	human	ensembl	74_37	-1	known	nonsense	c.391	p.E131*	1.000	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	CHST10	HGNC	ENSG00000115526	tier1	-	-	33	0	0.00	21	7	25.00
ZNF234	0	genome.wustl.edu	37	19	44661971	44661971	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	19	44661971	44661971	G	T	SNP	ZNF234	ENST00000426739	human	ensembl	74_37	+1	known	missense	c.1802	p.C601F	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF234	HGNC	ENSG00000263002	tier1	-	-	58	0	0.00	44	4	8.33
CHST1	0	genome.wustl.edu	37	11	45670506	45670507	+	RNA	INS	-	-	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	11	45670506	45670507	-	T	INS	CHST1	ENST00000533673	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.924:0.922	-	-	-	no_errors	CHST1	HGNC	ENSG00000175264	tier1			41	0	0.00	13	2	13.33
NCOA6	0	genome.wustl.edu	37	20	33345721	33345723	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	20	33345721	33345723	TGC	-	DEL	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	in_frame_del	c.830_828	p.Q280in_frame_del	1.000:1.000:0.999	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	tier1			37	0	0.00	35	4	10.26
PAPPA2	0	genome.wustl.edu	37	1	176564098	176564098	+	Missense_Mutation	SNP	A	A	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	1	176564098	176564098	A	T	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.1358	p.D453V	0.000	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	tier1	-	-	24	0	0.00	22	4	15.38
FSCB	0	genome.wustl.edu	37	14	44976143	44976143	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	14	44976143	44976143	G	C	SNP	FSCB	ENST00000340446	human	ensembl	74_37	-1	known	missense	c.48	p.H16Q	0.000	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139	tier1	-	-	76	0	0.00	58	18	23.68
BCMO1	0	genome.wustl.edu	37	16	81323977	81323977	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	16	81323977	81323977	C	T	SNP	BCMO1	ENST00000258168	human	ensembl	74_37	+1	known	missense	c.1439	p.S480F	0.997	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697	tier1	-	-	66	0	0.00	47	7	12.96
ZAK	0	genome.wustl.edu	37	2	173955845	173955845	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	2	173955845	173955845	G	T	SNP	ZAK	ENST00000375213	human	ensembl	74_37	+1	known	missense	c.86	p.S29I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLTK	Uniprot_gn	ENSG00000091436	tier1	-	-	63	0	0.00	40	4	9.09
SBNO2	0	genome.wustl.edu	37	19	1112841	1112847	+	Frame_Shift_Del	DEL	CTTCTCC	CTTCTCC	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	CTTCTCC	CTTCTCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	19	1112841	1112847	CTTCTCC	-	DEL	SBNO2	ENST00000361757	human	ensembl	74_37	-1	known	frame_shift_del	c.2355_2349	p.R783fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	SBNO2	HGNC	ENSG00000064932	tier1			NA	NA	NA	NA	NA	NA
KANK1	0	genome.wustl.edu	37	9	732475	732477	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	9	732475	732477	GAG	-	DEL	KANK1	ENST00000382297	human	ensembl	74_37	+1	known	in_frame_del	c.3103_3105	p.E1038in_frame_del	1.000:1.000:1.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104	tier1			54	0	0.00	44	4	8.33
FOLH1B	0	genome.wustl.edu	37	11	89385760	89385760	+	RNA	SNP	C	C	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	11	89385760	89385760	C	A	SNP	FOLH1B	ENST00000526379	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612	tier1	-	-	107	0	0.00	29	46	61.33
GVINP1	0	genome.wustl.edu	37	11	6735924	6735924	+	RNA	SNP	T	T	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	11	6735924	6735924	T	A	SNP	GVINP1	ENST00000526769	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.878	-	-	-	no_errors	GVINP1	HGNC	ENSG00000254838	tier1	-	-	75	0	0.00	21	31	59.62
ANO2	0	genome.wustl.edu	37	12	5908718	5908718	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	12	5908718	5908718	G	A	SNP	ANO2	ENST00000356134	human	ensembl	74_37	-1	known	missense	c.1001	p.A334V	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617	tier1	-	-	94	0	0.00	52	13	20.00
PLEKHG5	0	genome.wustl.edu	37	1	6529183	6529185	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	1	6529183	6529185	TCC	-	DEL	PLEKHG5	ENST00000537245	human	ensembl	74_37	-1	known	in_frame_del	c.2405_2403	p.E802in_frame_del	0.152:0.271:0.391	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG5	HGNC	ENSG00000171680	tier1			27	0	0.00	21	5	19.23
ITPK1-AS1	0	genome.wustl.edu	37	14	93537319	93537319	+	RNA	SNP	G	G	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	14	93537319	93537319	G	T	SNP	ITPK1-AS1	ENST00000553639	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.107	-	-	-	no_errors	ITPK1-AS1	HGNC	ENSG00000258730	tier1	-	-	46	0	0.00	25	15	37.50
SASH1	0	genome.wustl.edu	37	6	148852780	148852780	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	6	148852780	148852780	G	A	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	missense	c.1547	p.S516N	1.000	pfam_rSAM/SH3_domain-containing	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961	tier1	-	-	70	0	0.00	18	30	62.50
GFRA3	0	genome.wustl.edu	37	5	137593567	137593567	+	Silent	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	5	137593567	137593567	G	A	SNP	GFRA3	ENST00000274721	human	ensembl	74_37	-1	known	silent	c.546	p.Y182	0.602	pfam_GDNF/GAS1,smart_GDNF/GAS1	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013	tier1	-	-	20	0	0.00	6	10	62.50
SHROOM4	0	genome.wustl.edu	37	X	50350911	50350911	+	Silent	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	X	50350911	50350911	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	silent	c.3231	p.R1077	0.008	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	tier1	-	-	48	0	0.00	65	11	14.47
ANP32AP1	0	genome.wustl.edu	37	15	35530195	35530195	+	RNA	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	15	35530195	35530195	G	A	SNP	ANP32AP1	ENST00000560832	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.056	-	-	-	no_errors	ANP32AP1	HGNC	ENSG00000259516	tier1	-	-	80	0	0.00	50	16	24.24
FAT1	0	genome.wustl.edu	37	4	187629482	187629482	+	Silent	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	4	187629482	187629482	G	A	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.1500	p.Y500	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	tier1	-	-	41	0	0.00	31	21	40.38
TOPORS	0	genome.wustl.edu	37	9	32543162	32543162	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	9	32543162	32543162	G	T	SNP	TOPORS	ENST00000360538	human	ensembl	74_37	-1	known	missense	c.1361	p.A454D	0.001	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TOPORS	HGNC	ENSG00000197579	tier1	-	-	50	0	0.00	14	3	17.65
WDFY4	0	genome.wustl.edu	37	10	49934024	49934024	+	Silent	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	10	49934024	49934024	G	A	SNP	WDFY4	ENST00000325239	human	ensembl	74_37	+1	known	silent	c.690	p.E230	0.988	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY4	HGNC	ENSG00000128815	tier1	-	-	20	0	0.00	15	4	21.05
MERTK	0	genome.wustl.edu	37	2	112722787	112722787	+	Silent	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	2	112722787	112722787	C	T	SNP	MERTK	ENST00000295408	human	ensembl	74_37	+1	known	silent	c.777	p.V259	0.449	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208	tier1	-	-	44	0	0.00	36	16	30.77
ENSG00000221280	0	genome.wustl.edu	37	12	118604652	118604653	+	RNA	INS	-	-	ACAC			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	12	118604652	118604653	-	ACAC	INS	ENSG00000221280	ENST00000408353	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	AC026366.1	Clone_based_ensembl_gene	ENSG00000221280	tier1			10	0	0.00	4	4	50.00
ITPRIPL1	0	genome.wustl.edu	37	2	96992793	96992795	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	2	96992793	96992795	GAG	-	DEL	ITPRIPL1	ENST00000361124	human	ensembl	74_37	+1	known	in_frame_del	c.448_450	p.E153in_frame_del	0.991:0.987:0.325	NULL	NULL	-	no_errors	ITPRIPL1	HGNC	ENSG00000198885	tier1			22	0	0.00	18	4	18.18
PTPRZ1	0	genome.wustl.edu	37	7	121513382	121513383	+	RNA	INS	-	-	CA			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	7	121513382	121513383	-	CA	INS	PTPRZ1	ENST00000471837	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	tier1			12	0	0.00	9	4	30.77
COL9A3	0	genome.wustl.edu	37	20	61467792	61467792	+	RNA	SNP	C	C	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	20	61467792	61467792	C	T	SNP	COL9A3	ENST00000467819	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.007	-	-	-	no_errors	COL9A3	HGNC	ENSG00000092758	tier1	-	-	34	0	0.00	24	4	14.29
PTEN	0	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	10	89692905	89692905	G	A	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	missense	c.389	p.R130Q	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	tier1	rs121909229	-	122	0	0.00	34	66	66.00
UQCRC1	0	genome.wustl.edu	37	3	48641757	48641757	+	Missense_Mutation	SNP	T	T	C			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	3	48641757	48641757	T	C	SNP	UQCRC1	ENST00000203407	human	ensembl	74_37	-1	known	missense	c.535	p.M179V	0.001	pfam_Pept_M16_N,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	UQCRC1	HGNC	ENSG00000010256	tier1	-	-	30	0	0.00	14	14	50.00
ANKLE1	0	genome.wustl.edu	37	19	17396345	17396345	+	Silent	SNP	G	G	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	19	17396345	17396345	G	T	SNP	ANKLE1	ENST00000394458	human	ensembl	74_37	+1	known	silent	c.1482	p.R494	0.963	NULL	pfam_Ankyrin_rpt,pfam_LEM_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_LEM/LEM-like_dom,superfamily_Lactate_DH/Glyco_Ohase_4_C,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_LEM_dom	-	no_errors	ANKLE1	HGNC	ENSG00000160117	tier1	-	-	53	0	0.00	36	4	10.00
LOC388813	0	genome.wustl.edu	37	21	16015347	16015347	+	Silent	SNP	T	T	C			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	21	16015347	16015347	T	C	SNP	LOC388813	ENST00000400562	human	ensembl	74_37	-1	putative	silent	c.132	p.E44	0.003	NULL	NULL	-	no_errors	AF165138.7	Clone_based_vega_gene	ENSG00000243440	tier1	-	-	86	0	0.00	54	29	34.94
PRDM14	0	genome.wustl.edu	37	8	70964471	70964471	+	Nonsense_Mutation	SNP	G	G	T			TCGA-WK-A8Y0-01A-11D-A417-09	TCGA-WK-A8Y0-10D-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efdaf8c2-1a45-4677-9eac-e5a8ab3dae46	f02bb3c1-15b5-43b8-a511-7e422b29cdbc	8	70964471	70964471	G	T	SNP	PRDM14	ENST00000276594	human	ensembl	74_37	-1	known	nonsense	c.1557	p.C519*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596	tier1	-	-	35	0	0.00	44	4	8.33
