Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
HERC1	0	genome.wustl.edu	37	15	63928318	63928318	+	Missense_Mutation	SNP	T	T	C			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	15	63928318	63928318	T	C	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.12256	p.T4086A	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	tier1	-	-	67	0	0.00	34	37	52.11
MAML2	0	genome.wustl.edu	37	11	95826234	95826234	+	Missense_Mutation	SNP	T	T	A			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	11	95826234	95826234	T	A	SNP	MAML2	ENST00000524717	human	ensembl	74_37	-1	known	missense	c.961	p.M321L	0.997	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	tier1	-	-	48	0	0.00	45	4	8.16
ENSG00000188693	0	genome.wustl.edu	37	7	91771742	91771742	+	RNA	SNP	C	C	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	7	91771742	91771742	C	T	SNP	ENSG00000188693	ENST00000453068	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CTB-161K23.1	Clone_based_vega_gene	ENSG00000188693	tier1	-	-	27	0	0.00	14	4	22.22
DTX1	0	genome.wustl.edu	37	12	113532615	113532615	+	Nonsense_Mutation	SNP	C	C	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	12	113532615	113532615	C	T	SNP	DTX1	ENST00000257600	human	ensembl	74_37	+1	known	nonsense	c.1249	p.R417*	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144	tier1	-	-	33	0	0.00	31	4	11.43
TRDN	0	genome.wustl.edu	37	6	123869712	123869712	+	Missense_Mutation	SNP	C	C	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	6	123869712	123869712	C	T	SNP	TRDN	ENST00000398178	human	ensembl	74_37	-1	known	missense	c.278	p.R93H	0.983	pfam_Asp-B-hydro/Triadin_dom	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	tier1	-	-	51	0	0.00	30	10	25.00
A3GALT2	0	genome.wustl.edu	37	1	33777708	33777708	+	Missense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	1	33777708	33777708	G	T	SNP	A3GALT2	ENST00000442999	human	ensembl	74_37	-1	novel	missense	c.280	p.Q94K	0.001	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	A3GALT2	HGNC	ENSG00000184389	tier1	-	-	84	0	0.00	41	4	8.89
SWAP70	0	genome.wustl.edu	37	11	9769442	9769442	+	Nonsense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	11	9769442	9769442	G	T	SNP	SWAP70	ENST00000318950	human	ensembl	74_37	+1	known	nonsense	c.1393	p.E465*	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_EF_hand_dom,pfscan_Pleckstrin_homology	-	no_errors	SWAP70	HGNC	ENSG00000133789	tier1	-	-	83	0	0.00	42	4	8.70
COPE	0	genome.wustl.edu	37	19	19021743	19021748	+	RNA	DEL	CCCGCG	CCCGCG	-			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	CCCGCG	CCCGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	19	19021743	19021748	CCCGCG	-	DEL	COPE	ENST00000597646	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.001:0.002:0.002:0.015:0.028	-	-	-	no_errors	COPE	HGNC	ENSG00000105669	tier1			NA	NA	NA	NA	NA	NA
LOC440905	0	genome.wustl.edu	37	2	130807905	130807905	+	RNA	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	2	130807905	130807905	G	T	SNP	LOC440905	ENST00000325390	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.233	-	-	-	no_errors	AC018865.8	Clone_based_vega_gene	ENSG00000180178	tier1	rs201541587	-	32	0	0.00	16	4	20.00
PTCHD1	0	genome.wustl.edu	37	X	23398042	23398042	+	Missense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	X	23398042	23398042	G	T	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	missense	c.686	p.W229L	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	tier1	-	-	77	0	0.00	46	4	8.00
C20orf96	0	genome.wustl.edu	37	20	257695	257695	+	Missense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	20	257695	257695	G	T	SNP	C20orf96	ENST00000360321	human	ensembl	74_37	-1	known	missense	c.815	p.S272Y	0.001	NULL	NULL	-	no_errors	C20orf96	HGNC	ENSG00000196476	tier1	-	-	38	0	0.00	19	4	17.39
TRAPPC13	0	genome.wustl.edu	37	5	64954317	64954317	+	Missense_Mutation	SNP	A	A	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	5	64954317	64954317	A	T	SNP	TRAPPC13	ENST00000545191	human	ensembl	74_37	+1	known	missense	c.690	p.Q230H	0.991	pfam_DUF974	pfam_DUF974	-	no_errors	TRAPPC13	HGNC	ENSG00000113597	tier1	-	-	40	0	0.00	22	3	12.00
C14orf182	0	genome.wustl.edu	37	14	50470549	50470550	+	RNA	INS	-	-	TT			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	14	50470549	50470550	-	TT	INS	C14orf182	ENST00000529902	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	C14orf182	HGNC	ENSG00000214900	tier1			37	0	0.00	18	3	14.29
ZEB2-AS1	0	genome.wustl.edu	37	2	145277515	145277515	+	RNA	SNP	C	C	G			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	2	145277515	145277515	C	G	SNP	ZEB2-AS1	ENST00000421083	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZEB2-AS1	HGNC	ENSG00000238057	tier1	-	-	81	0	0.00	34	21	38.18
ASUN	0	genome.wustl.edu	37	12	27078722	27078722	+	Missense_Mutation	SNP	C	C	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	12	27078722	27078722	C	T	SNP	ASUN	ENST00000261191	human	ensembl	74_37	-1	known	missense	c.647	p.S216N	1.000	pfam_Cell_cycle_regulator_Mat89Bb	pfam_Cell_cycle_regulator_Mat89Bb	-	no_errors	ASUN	HGNC	ENSG00000064102	tier1	-	-	46	0	0.00	43	4	8.51
PM20D1	0	genome.wustl.edu	37	1	205819093	205819093	+	Silent	SNP	C	C	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	1	205819093	205819093	C	T	SNP	PM20D1	ENST00000367136	human	ensembl	74_37	-1	known	silent	c.108	p.A36	0.000	NULL	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors	PM20D1	HGNC	ENSG00000162877	tier1	-	-	63	0	0.00	41	5	10.87
A2ML1	0	genome.wustl.edu	37	12	8997981	8997981	+	RNA	SNP	T	T	C			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	12	8997981	8997981	T	C	SNP	A2ML1	ENST00000540049	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	A2ML1	HGNC	ENSG00000166535	tier1	-	-	44	0	0.00	23	3	11.54
GPR141	0	genome.wustl.edu	37	7	37780183	37780183	+	Missense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	7	37780183	37780183	G	T	SNP	GPR141	ENST00000334425	human	ensembl	74_37	+1	known	missense	c.188	p.S63I	0.946	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR141	HGNC	ENSG00000187037	tier1	-	-	31	0	0.00	32	4	11.11
MIR3648	0	genome.wustl.edu	37	21	9825966	9825966	+	RNA	SNP	A	A	C			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	21	9825966	9825966	A	C	SNP	MIR3648	ENST00000581792	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.050	-	-	-	no_errors	MIR3648	HGNC	ENSG00000264462	tier1	rs1796672	-	17	0	0.00	7	4	36.36
EXOC6	0	genome.wustl.edu	37	10	94773974	94773974	+	Missense_Mutation	SNP	C	C	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	10	94773974	94773974	C	T	SNP	EXOC6	ENST00000371547	human	ensembl	74_37	+1	known	missense	c.2167	p.P723S	1.000	pfam_Sec15,pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190	tier1	-	-	47	0	0.00	30	4	11.76
USP32	0	genome.wustl.edu	37	17	58379033	58379033	+	Silent	SNP	T	T	C			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	17	58379033	58379033	T	C	SNP	USP32	ENST00000300896	human	ensembl	74_37	-1	known	silent	c.219	p.K73	1.000	NULL	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_EF_hand_dom,smart_Pept_C19_DUSP,pfscan_EF_hand_dom,pfscan_Peptidase_C19/C67,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	tier1	-	-	64	0	0.00	31	3	8.82
SLC6A20	0	genome.wustl.edu	37	3	45807258	45807258	+	RNA	DEL	T	T	-			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	3	45807258	45807258	T	-	DEL	SLC6A20	ENST00000493980	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.231	-	-	-	no_errors	SLC6A20	HGNC	ENSG00000163817	tier1			42	0	0.00	11	2	15.38
ACSM3	0	genome.wustl.edu	37	16	20803613	20803613	+	Missense_Mutation	SNP	G	G	A			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	16	20803613	20803613	G	A	SNP	ACSM3	ENST00000289416	human	ensembl	74_37	+1	known	missense	c.1510	p.A504T	0.005	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM3	HGNC	ENSG00000005187	tier1	-	-	58	0	0.00	37	4	9.76
PC	0	genome.wustl.edu	37	11	66617484	66617484	+	Missense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	11	66617484	66617484	G	T	SNP	PC	ENST00000393958	human	ensembl	74_37	-1	known	missense	c.2822	p.P941H	1.000	pfam_Carboxylase_cons_dom,pirsf_Pyruv_COase,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599	tier1	-	-	74	0	0.00	39	4	9.30
EFCAB3	0	genome.wustl.edu	37	17	60483901	60483901	+	Missense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	17	60483901	60483901	G	T	SNP	EFCAB3	ENST00000450662	human	ensembl	74_37	+1	known	missense	c.705	p.M235I	0.017	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB3	HGNC	ENSG00000172421	tier1	-	-	70	0	0.00	27	4	12.90
POU2F2	0	genome.wustl.edu	37	19	42626729	42626729	+	Splice_Site	SNP	C	C	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	19	42626729	42626729	C	T	SNP	POU2F2	ENST00000342301	human	ensembl	74_37	-1	known	splice_site	c.29-1	e2-1	1.000	-	-	-	no_errors	POU2F2	HGNC	ENSG00000028277	tier1	-	-	103	0	0.00	66	24	26.67
ZNF608	0	genome.wustl.edu	37	5	123983157	123983157	+	Missense_Mutation	SNP	T	T	A			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	5	123983157	123983157	T	A	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	missense	c.2920	p.S974C	0.011	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916	tier1	-	-	47	0	0.00	36	4	10.00
DBN1	0	genome.wustl.edu	37	5	176885489	176885490	+	Frame_Shift_Ins	INS	-	-	C			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	5	176885489	176885490	-	C	INS	DBN1	ENST00000292385	human	ensembl	74_37	-1	known	frame_shift_ins	c.1352_1351	p.A451fs	0.212:0.018	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	DBN1	HGNC	ENSG00000113758	tier1			68	0	0.00	22	15	40.54
FADS1	0	genome.wustl.edu	37	11	61571200	61571200	+	Missense_Mutation	SNP	G	G	A			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	11	61571200	61571200	G	A	SNP	FADS1	ENST00000350997	human	ensembl	74_37	-1	known	missense	c.1093	p.L365F	0.631	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	FADS1	HGNC	ENSG00000149485	tier1	-	-	46	0	0.00	26	3	10.00
VPS33B	0	genome.wustl.edu	37	15	91548939	91548939	+	Missense_Mutation	SNP	G	G	A			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	15	91548939	91548939	G	A	SNP	VPS33B	ENST00000333371	human	ensembl	74_37	-1	known	missense	c.1015	p.R339C	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33B	HGNC	ENSG00000184056	tier1	-	-	42	0	0.00	37	4	9.76
ENSG00000267075	0	genome.wustl.edu	37	17	20451293	20451293	+	RNA	SNP	A	A	G			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	17	20451293	20451293	A	G	SNP	ENSG00000267075	ENST00000591705	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	RP11-434D2.3	Clone_based_vega_gene	ENSG00000267075	tier1	-	-	24	0	0.00	15	5	25.00
TPM3	0	genome.wustl.edu	37	1	154144673	154144674	+	RNA	INS	-	-	A			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	1	154144673	154144674	-	A	INS	TPM3	ENST00000469717	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012:0.000	-	-	-	no_errors	TPM3	HGNC	ENSG00000143549	tier1			64	0	0.00	42	6	12.50
CAMSAP2	0	genome.wustl.edu	37	1	200821711	200821711	+	Missense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	1	200821711	200821711	G	T	SNP	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	missense	c.3541	p.A1181S	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200	tier1	-	-	37	0	0.00	40	4	9.09
YTHDC2	0	genome.wustl.edu	37	5	112868613	112868613	+	Missense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	5	112868613	112868613	G	T	SNP	YTHDC2	ENST00000161863	human	ensembl	74_37	+1	known	missense	c.713	p.G238V	0.916	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_YTH_domain,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,pfam_R3H_ss-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_R3H_ss-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_R3H_ss-bd,pfscan_YTH_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	YTHDC2	HGNC	ENSG00000047188	tier1	-	-	56	0	0.00	41	4	8.89
STAB1	0	genome.wustl.edu	37	3	52540712	52540712	+	Missense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	3	52540712	52540712	G	T	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	missense	c.1835	p.R612L	1.000	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	tier1	-	-	30	0	0.00	8	4	33.33
DUSP27	0	genome.wustl.edu	37	1	167096608	167096608	+	Missense_Mutation	SNP	G	G	A			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	1	167096608	167096608	G	A	SNP	DUSP27	ENST00000271385	human	ensembl	74_37	+1	known	missense	c.2240	p.R747H	0.840	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	tier1	rs200160038	-	37	0	0.00	32	4	10.26
PRR14	0	genome.wustl.edu	37	16	30666296	30666296	+	Silent	SNP	T	T	C			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	16	30666296	30666296	T	C	SNP	PRR14	ENST00000300835	human	ensembl	74_37	+1	known	silent	c.1005	p.P335	1.000	NULL	NULL	-	no_errors	PRR14	HGNC	ENSG00000156858	tier1	-	-	57	0	0.00	42	4	8.70
TTLL11	0	genome.wustl.edu	37	9	124801570	124801570	+	Silent	SNP	A	A	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	9	124801570	124801570	A	T	SNP	TTLL11	ENST00000321582	human	ensembl	74_37	-1	known	silent	c.810	p.G270	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL11	HGNC	ENSG00000175764	tier1	-	-	97	0	0.00	62	8	11.43
RPL13A	0	genome.wustl.edu	37	19	49993810	49993810	+	Missense_Mutation	SNP	G	G	A			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	19	49993810	49993810	G	A	SNP	RPL13A	ENST00000391857	human	ensembl	74_37	+1	known	missense	c.233	p.R78H	1.000	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,tigrfam_Ribosomal_L13_euk/arc	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,tigrfam_Ribosomal_L13_euk/arc	-	no_errors	RPL13A	HGNC	ENSG00000142541	tier1	-	-	50	0	0.00	46	4	8.00
EML4	0	genome.wustl.edu	37	2	42530460	42530460	+	Silent	SNP	T	T	C			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	2	42530460	42530460	T	C	SNP	EML4	ENST00000318522	human	ensembl	74_37	+1	known	silent	c.1773	p.H591	0.997	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924	tier1	-	-	40	0	0.00	22	3	12.00
CYLC2	0	genome.wustl.edu	37	9	105767704	105767704	+	Missense_Mutation	SNP	C	C	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	9	105767704	105767704	C	T	SNP	CYLC2	ENST00000374798	human	ensembl	74_37	+1	known	missense	c.791	p.A264V	0.000	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833	tier1	-	-	48	0	0.00	44	4	8.33
ENSG00000221280	0	genome.wustl.edu	37	12	118604652	118604653	+	RNA	INS	-	-	ACAC			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	12	118604652	118604653	-	ACAC	INS	ENSG00000221280	ENST00000408353	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	AC026366.1	Clone_based_ensembl_gene	ENSG00000221280	tier1			19	0	0.00	8	3	27.27
ATG16L1	0	genome.wustl.edu	37	2	234173536	234173536	+	Splice_Site	SNP	A	A	G			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	2	234173536	234173536	A	G	SNP	ATG16L1	ENST00000392017	human	ensembl	74_37	+1	known	splice_site	c.390-2	e5-2	1.000	-	-	-	no_errors	ATG16L1	HGNC	ENSG00000085978	tier1	-	-	54	0	0.00	26	14	35.00
PAMR1	0	genome.wustl.edu	37	11	35454442	35454442	+	Splice_Site	DEL	T	T	-			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	11	35454442	35454442	T	-	DEL	PAMR1	ENST00000278360	human	ensembl	74_37	-1	known	splice_site_del	c.1678-2	e12-2	1.000	-	-	-	no_errors	PAMR1	HGNC	ENSG00000149090	tier1			51	0	0.00	14	2	12.50
XPO1	0	genome.wustl.edu	37	2	61726050	61726051	+	Splice_Site	INS	-	-	A			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	2	61726050	61726051	-	A	INS	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	splice_site_ins	c.591-3_591-2	e7-2	1.000:0.996	-	-	-	no_errors	XPO1	HGNC	ENSG00000082898	tier1			35	0	0.00	17	4	19.05
KARS	0	genome.wustl.edu	37	16	75665341	75665341	+	Missense_Mutation	SNP	G	G	A			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	16	75665341	75665341	G	A	SNP	KARS	ENST00000319410	human	ensembl	74_37	-1	known	missense	c.1309	p.P437S	1.000	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Lys-tRNA-ligase_II	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Lys-tRNA-synth_II_C,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Lys-tRNA-ligase_II	-	no_errors	KARS	HGNC	ENSG00000065427	tier1	-	-	44	0	0.00	26	4	13.33
NUTM2E	0	genome.wustl.edu	37	10	81606700	81606700	+	Silent	SNP	C	C	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	10	81606700	81606700	C	T	SNP	NUTM2E	ENST00000429984	human	ensembl	74_37	+1	known	silent	c.1197	p.Y399	0.069	NULL	NULL	-	no_errors	NUTM2E	HGNC	ENSG00000228570	tier1	-	-	17	0	0.00	3	5	62.50
ZNF532	0	genome.wustl.edu	37	18	56601781	56601781	+	Missense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	18	56601781	56601781	G	T	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	+1	known	missense	c.2463	p.R821S	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657	tier1	-	-	60	0	0.00	36	4	10.00
SLC6A16	0	genome.wustl.edu	37	19	49796572	49796572	+	Silent	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	19	49796572	49796572	G	T	SNP	SLC6A16	ENST00000335875	human	ensembl	74_37	-1	known	silent	c.1686	p.I562	0.002	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127	tier1	-	-	81	0	0.00	43	4	8.51
MKI67	0	genome.wustl.edu	37	10	129906760	129906760	+	Missense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	10	129906760	129906760	G	T	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.3344	p.S1115Y	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	tier1	-	-	45	0	0.00	45	4	8.16
NHSL1	0	genome.wustl.edu	37	6	138752872	138752872	+	Frame_Shift_Del	DEL	T	T	-			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	6	138752872	138752872	T	-	DEL	NHSL1	ENST00000427025	human	ensembl	74_37	-1	known	frame_shift_del	c.2622	p.K874fs	0.260	NULL	NULL	-	no_errors	NHSL1	HGNC	ENSG00000135540	tier1			38	0	0.00	20	2	9.09
ATXN7L1	0	genome.wustl.edu	37	7	105254802	105254804	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	7	105254802	105254804	GAG	-	DEL	ATXN7L1	ENST00000419735	human	ensembl	74_37	-1	known	in_frame_del	c.1979_1977	p.S661in_frame_del	0.098:0.098:0.097	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	tier1			53	0	0.00	46	7	13.21
LRRK1	0	genome.wustl.edu	37	15	101555577	101555577	+	Missense_Mutation	SNP	A	A	G			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	15	101555577	101555577	A	G	SNP	LRRK1	ENST00000388948	human	ensembl	74_37	+1	known	missense	c.1579	p.R527G	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	tier1	-	-	66	0	0.00	33	4	10.81
PAPPA2	0	genome.wustl.edu	37	1	176564689	176564689	+	Missense_Mutation	SNP	C	C	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	1	176564689	176564689	C	T	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.1949	p.A650V	0.998	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	tier1	-	-	50	0	0.00	35	4	10.00
BCAR1	0	genome.wustl.edu	37	16	75298316	75298316	+	Missense_Mutation	SNP	C	C	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	16	75298316	75298316	C	T	SNP	BCAR1	ENST00000418647	human	ensembl	74_37	-1	known	missense	c.83	p.G28D	0.000	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	BCAR1	HGNC	ENSG00000050820	tier1	-	-	54	0	0.00	22	3	12.00
RNF216	0	genome.wustl.edu	37	7	5765071	5765071	+	Splice_Site	SNP	T	T	A			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	7	5765071	5765071	T	A	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	splice_site	c.1390-2	e7-2	1.000	-	-	-	no_errors	RNF216	HGNC	ENSG00000011275	tier1	-	-	63	0	0.00	43	4	8.51
PCDHA8	0	genome.wustl.edu	37	5	140223169	140223169	+	Missense_Mutation	SNP	C	C	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	5	140223169	140223169	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	missense	c.2263	p.P755S	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	tier1	-	-	83	0	0.00	42	4	8.70
SDAD1P1	0	genome.wustl.edu	37	8	26237768	26237768	+	RNA	SNP	T	T	C			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	8	26237768	26237768	T	C	SNP	SDAD1P1	ENST00000519902	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDAD1P1	HGNC	ENSG00000228451	tier1	-	-	49	0	0.00	42	4	8.70
RNF14	0	genome.wustl.edu	37	5	141353195	141353195	+	Silent	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	5	141353195	141353195	G	T	SNP	RNF14	ENST00000347642	human	ensembl	74_37	+1	known	silent	c.42	p.L14	1.000	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	pfam_RWD-domain,pfam_Znf_C6HC,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_C6HC,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF14	HGNC	ENSG00000013561	tier1	-	-	58	0	0.00	42	4	8.70
C1orf137	0	genome.wustl.edu	37	1	117237401	117237401	+	Missense_Mutation	SNP	G	G	T			TCGA-X6-A8C7-01A-11D-A36J-09	TCGA-X6-A8C7-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b052af04-ea5e-4acc-8fd1-1b647128a35b	ef4fb3ba-651c-48b8-b2c6-5e957c154b14	1	117237401	117237401	G	T	SNP	C1orf137	ENST00000369482	human	ensembl	74_37	+1	known	missense	c.89	p.G30V	0.000	NULL	NULL	-	no_errors	C1orf137	HGNC	ENSG00000203864	tier1	-	-	74	0	0.00	41	4	8.89
