Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
GRP	0	genome.wustl.edu	37	18	56892836	56892836	+	Missense_Mutation	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	18	56892836	56892836	G	T	SNP	GRP	ENST00000256857	human	ensembl	74_37	+1	known	missense	c.252	p.L84F	0.994	NULL	pfam_Bombesin	-	no_errors	GRP	HGNC	ENSG00000134443	tier1	-	-	82	0	0.00	39	21	35.00
GPX8	0	genome.wustl.edu	37	5	54460113	54460113	+	RNA	DEL	T	T	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	5	54460113	54460113	T	-	DEL	GPX8	ENST00000506123	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPX8	HGNC	ENSG00000164294	tier1			30	0	0.00	23	3	11.54
FANCD2	0	genome.wustl.edu	37	3	10108898	10108898	+	Silent	SNP	A	A	G			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	3	10108898	10108898	A	G	SNP	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	silent	c.2391	p.V797	0.998	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	tier1	rs77246387	-	41	0	0.00	69	6	8.00
PTPRK	0	genome.wustl.edu	37	6	128321225	128321225	+	RNA	DEL	A	A	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	6	128321225	128321225	A	-	DEL	PTPRK	ENST00000524481	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.625	-	-	-	no_errors	PTPRK	HGNC	ENSG00000152894	tier1			13	0	0.00	20	2	9.09
ZNF217	0	genome.wustl.edu	37	20	52192497	52192497	+	Frame_Shift_Del	DEL	A	A	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	20	52192497	52192497	A	-	DEL	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	frame_shift_del	c.2806	p.Y936fs	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940	tier1			68	0	0.00	20	2	9.09
SYCP2	0	genome.wustl.edu	37	20	58496452	58496452	+	Missense_Mutation	SNP	T	T	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	20	58496452	58496452	T	A	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	missense	c.81	p.K27N	0.064	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	tier1	-	-	75	0	0.00	12	51	79.69
ETNPPL	0	genome.wustl.edu	37	4	109683976	109683976	+	Splice_Site	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	4	109683976	109683976	C	T	SNP	ETNPPL	ENST00000510706	human	ensembl	74_37	-1	putative	splice_site	c.1+1	e0+1	0.000	-	-	-	no_errors	ETNPPL	HGNC	ENSG00000164089	tier1	-	-	72	0	0.00	17	6	25.00
FMN1	0	genome.wustl.edu	37	15	33446037	33446037	+	Missense_Mutation	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	15	33446037	33446037	G	T	SNP	FMN1	ENST00000320930	human	ensembl	74_37	-1	known	missense	c.1079	p.A360D	0.056	NULL	NULL	-	no_errors	FMN1	HGNC	ENSG00000248905	tier1	-	-	85	0	0.00	22	4	15.38
ZNF354B	0	genome.wustl.edu	37	5	178310890	178310890	+	Silent	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	5	178310890	178310890	C	T	SNP	ZNF354B	ENST00000322434	human	ensembl	74_37	+1	known	silent	c.1437	p.S479	0.127	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354B	HGNC	ENSG00000178338	tier1	-	-	64	0	0.00	19	6	24.00
UCKL1	0	genome.wustl.edu	37	20	62587648	62587648	+	Silent	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	20	62587648	62587648	C	T	SNP	UCKL1	ENST00000354216	human	ensembl	74_37	-1	known	silent	c.78	p.R26	0.005	NULL	pfam_PRK/URK,pfam_CPT,superfamily_P-loop_NTPase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCKL1	HGNC	ENSG00000198276	tier1	-	-	104	0	0.00	34	4	10.53
SPATA31E1	0	genome.wustl.edu	37	9	90500171	90500171	+	Missense_Mutation	SNP	C	C	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	9	90500171	90500171	C	A	SNP	SPATA31E1	ENST00000325643	human	ensembl	74_37	+1	known	missense	c.769	p.P257T	0.000	NULL	NULL	-	no_errors	SPATA31E1	HGNC	ENSG00000177992	tier1	-	-	70	0	0.00	44	4	8.33
KCNA1	0	genome.wustl.edu	37	12	5020795	5020795	+	Missense_Mutation	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	12	5020795	5020795	G	A	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	missense	c.251	p.R84H	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	tier1	-	-	212	0	0.00	97	20	16.95
SLC35A4	0	genome.wustl.edu	37	5	139947189	139947191	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	5	139947189	139947191	GCT	-	DEL	SLC35A4	ENST00000323146	human	ensembl	74_37	+1	known	in_frame_del	c.435_437	p.L149in_frame_del	0.375:0.638:0.998	pfam_Nuc_sug_transpt,pfam_DMT,pirsf_UDP/CMP-sugar_transptr	pfam_Nuc_sug_transpt,pfam_DMT,pirsf_UDP/CMP-sugar_transptr	-	no_errors	SLC35A4	HGNC	ENSG00000176087	tier1			47	0	0.00	7	2	22.22
SORBS1	0	genome.wustl.edu	37	10	97116159	97116159	+	Frame_Shift_Del	DEL	G	G	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	10	97116159	97116159	G	-	DEL	SORBS1	ENST00000607232	human	ensembl	74_37	-1	known	frame_shift_del	c.2133	p.T712fs	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637	tier1			69	0	0.00	10	2	16.67
EDEM1	0	genome.wustl.edu	37	3	5257568	5257568	+	Missense_Mutation	SNP	A	A	G			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	3	5257568	5257568	A	G	SNP	EDEM1	ENST00000256497	human	ensembl	74_37	+1	known	missense	c.1939	p.M647V	1.000	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM1	HGNC	ENSG00000134109	tier1	-	-	115	0	0.00	46	11	19.30
HSF2BP	0	genome.wustl.edu	37	21	44949764	44949764	+	Missense_Mutation	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	21	44949764	44949764	G	A	SNP	HSF2BP	ENST00000291560	human	ensembl	74_37	-1	known	missense	c.875	p.S292L	0.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HSF2BP	HGNC	ENSG00000160207	tier1	-	-	67	0	0.00	41	41	50.00
SRGAP3	0	genome.wustl.edu	37	3	9106121	9106121	+	Missense_Mutation	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	3	9106121	9106121	G	A	SNP	SRGAP3	ENST00000383836	human	ensembl	74_37	-1	known	missense	c.631	p.R211C	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP3	HGNC	ENSG00000196220	tier1	-	-	62	0	0.00	15	14	48.28
GTPBP2	0	genome.wustl.edu	37	6	43593082	43593082	+	RNA	SNP	C	C	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	6	43593082	43593082	C	A	SNP	GTPBP2	ENST00000480263	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	GTPBP2	HGNC	ENSG00000172432	tier1	-	-	67	0	0.00	32	4	11.11
TNC	0	genome.wustl.edu	37	9	117808688	117808688	+	Splice_Site	SNP	C	C	G			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	9	117808688	117808688	C	G	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	splice_site	c.5125+1	e16+1	1.000	-	-	-	no_errors	TNC	HGNC	ENSG00000041982	tier1	rs111797890	-	100	0	0.00	23	6	20.69
THSD7A	0	genome.wustl.edu	37	7	11514099	11514099	+	Frame_Shift_Del	DEL	C	C	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	7	11514099	11514099	C	-	DEL	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	frame_shift_del	c.2114	p.G705fs	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	tier1			81	0	0.00	31	3	8.82
SLC35F4	0	genome.wustl.edu	37	14	58030878	58030878	+	Missense_Mutation	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	14	58030878	58030878	C	T	SNP	SLC35F4	ENST00000339762	human	ensembl	74_37	-1	known	missense	c.1541	p.G514E	1.000	NULL	pfam_DMT,pfam_SLC35_F1/F2/F6	-	no_errors	SLC35F4	HGNC	ENSG00000151812	tier1	-	-	54	0	0.00	44	4	8.33
ANXA8L2	0	genome.wustl.edu	37	10	47754779	47754779	+	Missense_Mutation	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	10	47754779	47754779	G	A	SNP	ANXA8L2	ENST00000374277	human	ensembl	74_37	+1	known	missense	c.386	p.R129Q	0.524	pfam_Annexin_repeat,smart_Annexin_repeat,prints_AnnexinIII	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVIII,prints_AnnexinIII	-	no_errors	ANXA8L2	HGNC	ENSG00000186807	tier1	-	-	82	0	0.00	8	11	57.89
DCSTAMP	0	genome.wustl.edu	37	8	105367322	105367322	+	Missense_Mutation	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	8	105367322	105367322	G	A	SNP	DCSTAMP	ENST00000297581	human	ensembl	74_37	+1	known	missense	c.1247	p.R416H	0.903	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	-	no_errors	DCSTAMP	HGNC	ENSG00000164935	tier1	-	-	54	0	0.00	17	8	32.00
FAM198A	0	genome.wustl.edu	37	3	43074191	43074191	+	Missense_Mutation	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	3	43074191	43074191	C	T	SNP	FAM198A	ENST00000273146	human	ensembl	74_37	+1	known	missense	c.436	p.P146S	0.000	NULL	NULL	-	no_errors	FAM198A	HGNC	ENSG00000144649	tier1	-	-	71	0	0.00	30	15	33.33
ASPM	0	genome.wustl.edu	37	1	197073160	197073160	+	Missense_Mutation	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	1	197073160	197073160	C	T	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.5221	p.G1741R	1.000	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	tier1	-	-	87	0	0.00	46	4	8.00
SYCP2	0	genome.wustl.edu	37	20	58476847	58476847	+	Missense_Mutation	SNP	A	A	G			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	20	58476847	58476847	A	G	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	missense	c.1052	p.L351P	0.996	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	tier1	-	-	86	0	0.00	4	27	87.10
NFATC2	0	genome.wustl.edu	37	20	50092070	50092070	+	Missense_Mutation	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	20	50092070	50092070	G	T	SNP	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	missense	c.1460	p.T487N	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096	tier1	-	-	171	0	0.00	45	4	8.16
RAD51AP2	0	genome.wustl.edu	37	2	17696723	17696723	+	Missense_Mutation	SNP	A	A	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	2	17696723	17696723	A	T	SNP	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	missense	c.2960	p.L987H	0.007	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842	tier1	-	-	22	0	0.00	13	12	48.00
HAS2	0	genome.wustl.edu	37	8	122629430	122629430	+	Missense_Mutation	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	8	122629430	122629430	G	T	SNP	HAS2	ENST00000303924	human	ensembl	74_37	-1	known	missense	c.644	p.T215N	1.000	pfam_Chitin_synth_fng	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961	tier1	-	-	57	0	0.00	28	4	12.50
INSC	0	genome.wustl.edu	37	11	15267818	15267818	+	RNA	SNP	G	G	C			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	11	15267818	15267818	G	C	SNP	INSC	ENST00000526102	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	INSC	HGNC	ENSG00000188487	tier1	-	-	59	0	0.00	24	10	29.41
FAM81B	0	genome.wustl.edu	37	5	94728590	94728590	+	Missense_Mutation	SNP	C	C	G			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	5	94728590	94728590	C	G	SNP	FAM81B	ENST00000283357	human	ensembl	74_37	+1	known	missense	c.217	p.Q73E	0.848	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347	tier1	-	-	99	0	0.00	102	31	23.31
CFDP1	0	genome.wustl.edu	37	16	75327731	75327732	+	RNA	INS	-	-	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	16	75327731	75327732	-	A	INS	CFDP1	ENST00000570103	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.904:0.940	-	-	-	no_errors	CFDP1	HGNC	ENSG00000153774	tier1			48	0	0.00	61	6	8.96
KDM4B	0	genome.wustl.edu	37	19	5077423	5077423	+	Missense_Mutation	SNP	A	A	C			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	19	5077423	5077423	A	C	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.722	p.H241P	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663	tier1	-	-	116	0	0.00	116	14	10.77
SPTBN2	0	genome.wustl.edu	37	11	66475241	66475241	+	Missense_Mutation	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	11	66475241	66475241	G	T	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.1399	p.H467N	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898	tier1	-	-	74	0	0.00	14	3	17.65
PCDH20	0	genome.wustl.edu	37	13	61986224	61986224	+	Nonsense_Mutation	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	13	61986224	61986224	G	A	SNP	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	nonsense	c.2008	p.R670*	0.907	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991	tier1	-	-	33	0	0.00	33	6	15.38
MYH11	0	genome.wustl.edu	37	16	15850274	15850274	+	Missense_Mutation	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	16	15850274	15850274	C	T	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	missense	c.1694	p.G565D	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392	tier1	-	-	141	0	0.00	72	10	12.05
CENPC	0	genome.wustl.edu	37	4	68338334	68338334	+	Missense_Mutation	SNP	T	T	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	4	68338334	68338334	T	A	SNP	CENPC	ENST00000273853	human	ensembl	74_37	-1	known	missense	c.2821	p.I941L	1.000	NULL	pfam_Mif2/CENP-C_cupin,pfam_Cupin_2,superfamily_RmlC_Cupin	-	no_errors	CENPC	HGNC	ENSG00000145241	tier1	-	-	184	0	0.00	60	113	64.94
ZNF536	0	genome.wustl.edu	37	19	31038939	31038939	+	Missense_Mutation	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	19	31038939	31038939	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.2413	p.R805W	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	tier1	-	-	54	0	0.00	22	6	21.43
FAM230A	0	genome.wustl.edu	37	22	20709420	20709420	+	Missense_Mutation	SNP	C	C	G			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	22	20709420	20709420	C	G	SNP	FAM230A	ENST00000434783	human	ensembl	74_37	+1	known	missense	c.1152	p.N384K	0.000	superfamily_Kinase-like_dom	pfam_Ret-finger_pr-like_3_antisense,superfamily_Kinase-like_dom	-	no_errors	FAM230A	HGNC	ENSG00000188280	tier1	-	-	111	1	0.89	79	7	8.14
TARS2	0	genome.wustl.edu	37	1	150469344	150469344	+	Missense_Mutation	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	1	150469344	150469344	G	A	SNP	TARS2	ENST00000369064	human	ensembl	74_37	+1	known	missense	c.980	p.R327Q	1.000	tigrfam_Thr-tRNA-ligase_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-ligase_IIa,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	tier1	-	-	88	0	0.00	39	9	18.75
CALML6	0	genome.wustl.edu	37	1	1848446	1848446	+	Silent	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	1	1848446	1848446	C	T	SNP	CALML6	ENST00000307786	human	ensembl	74_37	+1	known	silent	c.432	p.N144	0.011	pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALML6	HGNC	ENSG00000169885	tier1	-	-	196	0	0.00	72	29	28.71
PCNT	0	genome.wustl.edu	37	21	47852034	47852034	+	Missense_Mutation	SNP	G	G	C			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	21	47852034	47852034	G	C	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.8656	p.E2886Q	0.022	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	tier1	-	-	20	0	0.00	14	7	33.33
ITGA3	0	genome.wustl.edu	37	17	48153819	48153819	+	Missense_Mutation	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	17	48153819	48153819	G	A	SNP	ITGA3	ENST00000320031	human	ensembl	74_37	+1	known	missense	c.1804	p.A602T	0.818	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884	tier1	-	-	36	0	0.00	17	4	19.05
UBXN10	0	genome.wustl.edu	37	1	20517707	20517707	+	Missense_Mutation	SNP	C	C	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	1	20517707	20517707	C	A	SNP	UBXN10	ENST00000375099	human	ensembl	74_37	+1	known	missense	c.653	p.T218K	0.962	pfam_UBX,smart_UBX,pfscan_UBX	pfam_UBX,smart_UBX,pfscan_UBX	-	no_errors	UBXN10	HGNC	ENSG00000162543	tier1	-	-	45	0	0.00	35	5	12.50
MAST1	0	genome.wustl.edu	37	19	12977542	12977542	+	Missense_Mutation	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	19	12977542	12977542	G	T	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	missense	c.2105	p.R702L	1.000	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	tier1	-	-	32	0	0.00	38	4	9.52
PARP2	0	genome.wustl.edu	37	14	20822373	20822373	+	Missense_Mutation	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	14	20822373	20822373	G	A	SNP	PARP2	ENST00000250416	human	ensembl	74_37	+1	known	missense	c.769	p.E257K	1.000	pfam_Poly(ADP-ribose)pol_reg_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP2	HGNC	ENSG00000129484	tier1	-	-	76	0	0.00	68	19	21.84
SLC22A14	0	genome.wustl.edu	37	3	38357847	38357847	+	Missense_Mutation	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	3	38357847	38357847	C	T	SNP	SLC22A14	ENST00000273173	human	ensembl	74_37	+1	known	missense	c.1565	p.S522L	0.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A14	HGNC	ENSG00000144671	tier1	rs114208565	GMAF=0.0005	112	0	0.00	25	12	32.43
ADAMTS18	0	genome.wustl.edu	37	16	77356258	77356258	+	Missense_Mutation	SNP	T	T	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	16	77356258	77356258	T	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.2138	p.D713V	0.993	prints_Peptidase_M12B_ADAM-TS	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873	tier1	-	-	104	0	0.00	33	39	54.17
LRRK2	0	genome.wustl.edu	37	12	40714914	40714914	+	Frame_Shift_Del	DEL	T	T	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	12	40714914	40714914	T	-	DEL	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	frame_shift_del	c.5094	p.Y1699fs	0.822	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	tier1			113	0	0.00	33	32	49.23
SKIV2L	0	genome.wustl.edu	37	6	31934559	31934559	+	Missense_Mutation	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	6	31934559	31934559	C	T	SNP	SKIV2L	ENST00000375394	human	ensembl	74_37	+1	known	missense	c.2276	p.A759V	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351	tier1	-	-	87	0	0.00	32	4	11.11
PTPRK	0	genome.wustl.edu	37	6	128321224	128321225	+	RNA	INS	-	-	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	6	128321224	128321225	-	A	INS	PTPRK	ENST00000524481	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.341:0.625	-	-	-	no_errors	PTPRK	HGNC	ENSG00000152894	tier1			13	0	0.00	19	3	13.64
GPR25	0	genome.wustl.edu	37	1	200842925	200842925	+	Missense_Mutation	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	1	200842925	200842925	G	T	SNP	GPR25	ENST00000304244	human	ensembl	74_37	+1	known	missense	c.760	p.V254L	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR25	HGNC	ENSG00000170128	tier1	-	-	117	0	0.00	39	4	9.30
NOTCH3	0	genome.wustl.edu	37	19	15281256	15281256	+	Missense_Mutation	SNP	C	C	G			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	19	15281256	15281256	C	G	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	missense	c.5000	p.R1667P	0.998	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	tier1	-	-	47	0	0.00	22	9	29.03
DAGLA	0	genome.wustl.edu	37	11	61511829	61511829	+	Missense_Mutation	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	11	61511829	61511829	G	T	SNP	DAGLA	ENST00000257215	human	ensembl	74_37	+1	known	missense	c.2997	p.E999D	1.000	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780	tier1	-	-	45	0	0.00	19	3	13.64
SLC9A5	0	genome.wustl.edu	37	16	67300017	67300019	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	16	67300017	67300019	GAG	-	DEL	SLC9A5	ENST00000299798	human	ensembl	74_37	+1	known	in_frame_del	c.2107_2109	p.E706in_frame_del	1.000:1.000:1.000	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A5	HGNC	ENSG00000135740	tier1			84	0	0.00	44	6	12.00
CCNL2	0	genome.wustl.edu	37	1	1334664	1334666	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	1	1334664	1334666	GCC	-	DEL	CCNL2	ENST00000400809	human	ensembl	74_37	-1	known	in_frame_del	c.23_21	p.A8in_frame_del	0.005:0.003:0.058	pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978	tier1			30	0	0.00	6	2	25.00
HAPLN4	0	genome.wustl.edu	37	19	19371776	19371776	+	Silent	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	19	19371776	19371776	G	T	SNP	HAPLN4	ENST00000291481	human	ensembl	74_37	-1	known	silent	c.330	p.G110	0.978	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN4	HGNC	ENSG00000187664	tier1	-	-	44	0	0.00	28	4	12.50
FN1	0	genome.wustl.edu	37	2	216243906	216243906	+	Missense_Mutation	SNP	T	T	C			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	2	216243906	216243906	T	C	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.5569	p.K1857E	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	tier1	-	-	80	0	0.00	25	23	47.92
STEAP2	0	genome.wustl.edu	37	7	89856742	89856742	+	Missense_Mutation	SNP	T	T	C			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	7	89856742	89856742	T	C	SNP	STEAP2	ENST00000287908	human	ensembl	74_37	+1	known	missense	c.950	p.V317A	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP2	HGNC	ENSG00000157214	tier1	-	-	87	0	0.00	56	10	15.15
HDC	0	genome.wustl.edu	37	15	50534531	50534531	+	Missense_Mutation	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	15	50534531	50534531	C	T	SNP	HDC	ENST00000267845	human	ensembl	74_37	-1	known	missense	c.1915	p.V639I	1.000	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	HDC	HGNC	ENSG00000140287	tier1	-	-	117	0	0.00	38	5	11.63
DNAH11	0	genome.wustl.edu	37	7	21775267	21775267	+	Missense_Mutation	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	7	21775267	21775267	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.7471	p.V2491I	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	tier1	-	-	65	0	0.00	42	4	8.70
KIAA1211	0	genome.wustl.edu	37	4	57193907	57193907	+	Silent	SNP	C	C	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	4	57193907	57193907	C	A	SNP	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	silent	c.3639	p.A1213	1.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	tier1	-	-	127	1	0.78	70	30	30.00
ZBED6CL	0	genome.wustl.edu	37	7	150027518	150027518	+	Missense_Mutation	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	7	150027518	150027518	G	A	SNP	ZBED6CL	ENST00000343855	human	ensembl	74_37	+1	known	missense	c.25	p.A9T	0.000	NULL	NULL	-	no_errors	ZBED6CL	HGNC	ENSG00000188707	tier1	-	-	77	0	0.00	44	4	8.33
CDHR1	0	genome.wustl.edu	37	10	85968029	85968029	+	Frame_Shift_Del	DEL	G	G	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	10	85968029	85968029	G	-	DEL	CDHR1	ENST00000372117	human	ensembl	74_37	+1	known	frame_shift_del	c.1063	p.G355fs	1.000	superfamily_Cadherin-like	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600	tier1			55	0	0.00	10	2	16.67
MFSD2A	0	genome.wustl.edu	37	1	40430569	40430569	+	RNA	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	1	40430569	40430569	C	T	SNP	MFSD2A	ENST00000480630	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MFSD2A	HGNC	ENSG00000168389	tier1	-	-	67	0	0.00	13	20	60.61
PLCD3	0	genome.wustl.edu	37	17	43192760	43192762	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	17	43192760	43192762	TCC	-	DEL	PLCD3	ENST00000322765	human	ensembl	74_37	-1	known	in_frame_del	c.1511_1509	p.E503in_frame_del	0.000:0.003:0.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD3	HGNC	ENSG00000161714	tier1			95	0	0.00	54	5	8.47
ZSWIM5	0	genome.wustl.edu	37	1	45671800	45671800	+	Missense_Mutation	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	1	45671800	45671800	C	T	SNP	ZSWIM5	ENST00000359600	human	ensembl	74_37	-1	known	missense	c.223	p.E75K	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415	tier1	-	-	59	0	0.00	32	19	37.25
LAMA5	0	genome.wustl.edu	37	20	60905970	60905970	+	Frame_Shift_Del	DEL	C	C	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	20	60905970	60905970	C	-	DEL	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	frame_shift_del	c.3681	p.K1227fs	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	tier1			79	0	0.00	16	2	11.11
XIST	0	genome.wustl.edu	37	X	73068944	73068944	+	RNA	DEL	A	A	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	X	73068944	73068944	A	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	XIST	HGNC	ENSG00000229807	tier1			53	0	0.00	12	2	14.29
ENSG00000204876	0	genome.wustl.edu	37	7	155755885	155755885	+	Frame_Shift_Del	DEL	G	G	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	7	155755885	155755885	G	-	DEL	ENSG00000204876	ENST00000377722	human	ensembl	74_37	+1	putative	frame_shift_del	c.362	p.D123fs	0.000	NULL	NULL	-	no_errors	AC021218.2	Clone_based_vega_gene	ENSG00000204876	tier1			49	0	0.00	15	3	16.67
SMPD2	0	genome.wustl.edu	37	6	109762653	109762653	+	Missense_Mutation	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	6	109762653	109762653	G	T	SNP	SMPD2	ENST00000258052	human	ensembl	74_37	+1	known	missense	c.144	p.E48D	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD2	HGNC	ENSG00000135587	tier1	-	-	65	0	0.00	39	4	9.30
PIP4K2A	0	genome.wustl.edu	37	10	22825871	22825871	+	RNA	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	10	22825871	22825871	C	T	SNP	PIP4K2A	ENST00000474335	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.750	-	-	-	no_errors	PIP4K2A	HGNC	ENSG00000150867	tier1	-	-	25	0	0.00	1	11	91.67
ENSG00000269534	0	genome.wustl.edu	37	19	48630701	48630702	+	RNA	DEL	CC	CC	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	19	48630701	48630702	CC	-	DEL	ENSG00000269534	ENST00000596563	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	CTC-453G23.5	Clone_based_vega_gene	ENSG00000269534	tier1			9	0	0.00	4	4	50.00
SZT2	0	genome.wustl.edu	37	1	43891314	43891314	+	Splice_Site	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	1	43891314	43891314	G	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	splice_site	c.2814+1	e19+1	1.000	-	-	-	no_errors	SZT2	HGNC	ENSG00000198198	tier1	-	-	58	0	0.00	5	3	37.50
ADCK5	0	genome.wustl.edu	37	8	145616475	145616475	+	Splice_Site	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	8	145616475	145616475	G	T	SNP	ADCK5	ENST00000308860	human	ensembl	74_37	+1	known	splice_site	c.684+1	e6+1	1.000	-	-	-	no_errors	ADCK5	HGNC	ENSG00000173137	tier1	-	-	120	0	0.00	23	4	14.81
ANKLE2	0	genome.wustl.edu	37	12	133313590	133313590	+	Silent	SNP	C	C	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	12	133313590	133313590	C	A	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	silent	c.1482	p.L494	0.999	NULL	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915	tier1	-	-	43	0	0.00	12	14	53.85
ZEB1	0	genome.wustl.edu	37	10	31816010	31816012	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	10	31816010	31816012	GAG	-	DEL	ZEB1	ENST00000361642	human	ensembl	74_37	+1	known	in_frame_del	c.3196_3198	p.E1069in_frame_del	0.998:1.000:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516	tier1			35	0	0.00	41	4	8.89
NOBOX	0	genome.wustl.edu	37	7	144098176	144098176	+	Nonsense_Mutation	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	7	144098176	144098176	G	T	SNP	NOBOX	ENST00000467773	human	ensembl	74_37	-1	known	nonsense	c.807	p.C269*	0.790	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	NOBOX	HGNC	ENSG00000106410	tier1	-	-	106	0	0.00	36	4	10.00
ATRX	0	genome.wustl.edu	37	X	76939662	76939662	+	Frame_Shift_Del	DEL	G	G	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	X	76939662	76939662	G	-	DEL	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	frame_shift_del	c.1086	p.T363fs	0.468	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1			60	0	0.00	18	2	10.00
MTMR7	0	genome.wustl.edu	37	8	17230662	17230662	+	Missense_Mutation	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	8	17230662	17230662	C	T	SNP	MTMR7	ENST00000180173	human	ensembl	74_37	-1	known	missense	c.112	p.V38M	1.000	NULL	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR7	HGNC	ENSG00000003987	tier1	-	-	106	0	0.00	77	20	20.41
EPHB6	0	genome.wustl.edu	37	7	142563919	142563919	+	Missense_Mutation	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	7	142563919	142563919	G	A	SNP	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	missense	c.1307	p.R436H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123	tier1	-	-	87	0	0.00	27	16	37.21
CACNA1D	0	genome.wustl.edu	37	3	53785793	53785793	+	Silent	SNP	C	C	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	3	53785793	53785793	C	T	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	silent	c.3594	p.Y1198	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	tier1	rs148248303	-	80	0	0.00	36	14	28.00
PVRL2	0	genome.wustl.edu	37	19	45381749	45381751	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	19	45381749	45381751	GAG	-	DEL	PVRL2	ENST00000252485	human	ensembl	74_37	+1	known	in_frame_del	c.1312_1314	p.E441in_frame_del	0.686:0.659:0.301	NULL	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PVRL2	HGNC	ENSG00000130202	tier1			44	0	0.00	24	3	11.11
ANAPC2	0	genome.wustl.edu	37	9	140080911	140080912	+	RNA	DEL	CA	CA	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	9	140080911	140080912	CA	-	DEL	ANAPC2	ENST00000495611	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ANAPC2	HGNC	ENSG00000176248	tier1			28	0	0.00	7	2	22.22
PCDH17	0	genome.wustl.edu	37	13	58299074	58299074	+	Silent	SNP	G	G	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	13	58299074	58299074	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.3126	p.A1042	0.971	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946	tier1	-	-	60	0	0.00	40	5	11.11
COL17A1	0	genome.wustl.edu	37	10	105807844	105807844	+	Frame_Shift_Del	DEL	C	C	-			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	10	105807844	105807844	C	-	DEL	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	frame_shift_del	c.2246	p.G749fs	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	tier1			62	0	0.00	12	2	14.29
DNAH2	0	genome.wustl.edu	37	17	7710493	7710493	+	Silent	SNP	G	G	T			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	17	7710493	7710493	G	T	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	silent	c.9468	p.L3156	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	tier1	-	-	71	0	0.00	34	4	10.53
MROH7-TTC4	0	genome.wustl.edu	37	1	55139736	55139736	+	Missense_Mutation	SNP	C	C	G			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	1	55139736	55139736	C	G	SNP	MROH7-TTC4	ENST00000414150	human	ensembl	74_37	+1	known	missense	c.1848	p.I616M	0.993	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH7-TTC4	HGNC	ENSG00000271723	tier1	-	-	98	0	0.00	27	8	22.86
SLC25A2	0	genome.wustl.edu	37	5	140683011	140683011	+	Missense_Mutation	SNP	T	T	C			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	5	140683011	140683011	T	C	SNP	SLC25A2	ENST00000239451	human	ensembl	74_37	-1	known	missense	c.422	p.E141G	0.891	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A2	HGNC	ENSG00000120329	tier1	-	-	76	0	0.00	33	7	17.50
LRRK2	0	genome.wustl.edu	37	12	40714915	40714915	+	Missense_Mutation	SNP	T	T	A			TCGA-X9-A971-01A-11D-A387-09	TCGA-X9-A971-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40187452-3e55-49e2-a541-e272da5ea58f	fc27b823-1add-40bb-9e0b-49f2e340b162	12	40714915	40714915	T	A	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.5095	p.Y1699N	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	tier1	-	-	114	0	0.00	30	35	53.85
