Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
MIR342	0	genome.wustl.edu	37	14	100576061	100576061	+	RNA	SNP	G	G	C			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	14	100576061	100576061	G	C	SNP	MIR342	ENST00000362212	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR342	HGNC	ENSG00000199082	tier1	-	-	31	0	0.00	40	4	9.09
DOCK10	0	genome.wustl.edu	37	2	225659678	225659678	+	Missense_Mutation	SNP	G	G	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	2	225659678	225659678	G	A	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.5072	p.S1691F	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	tier1	-	-	67	0	0.00	39	15	27.78
MUC12	0	genome.wustl.edu	37	7	100643080	100643080	+	Missense_Mutation	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	7	100643080	100643080	C	T	SNP	MUC12	ENST00000536621	human	ensembl	74_37	+1	known	missense	c.9236	p.T3079M	0.000	NULL	pfam_SEA_dom	-	no_errors	MUC12	HGNC	ENSG00000205277	tier1	rs139875131	-	11	0	0.00	7	3	30.00
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74929214	74929214	+	Missense_Mutation	SNP	G	G	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	1	74929214	74929214	G	T	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	missense	c.2443	p.G815W	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030	tier1	-	-	43	0	0.00	35	4	10.26
C6orf89	0	genome.wustl.edu	37	6	36891153	36891153	+	Missense_Mutation	SNP	A	A	G			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	6	36891153	36891153	A	G	SNP	C6orf89	ENST00000355190	human	ensembl	74_37	+1	known	missense	c.1001	p.Y334C	0.860	NULL	NULL	-	no_errors	C6orf89	HGNC	ENSG00000198663	tier1	-	-	42	0	0.00	7	24	77.42
LONRF2	0	genome.wustl.edu	37	2	100900776	100900776	+	Missense_Mutation	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	2	100900776	100900776	C	T	SNP	LONRF2	ENST00000393437	human	ensembl	74_37	-1	known	missense	c.2249	p.R750K	0.000	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_Znf_RING,smart_TPR_repeat,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF2	HGNC	ENSG00000170500	tier1	-	-	49	0	0.00	18	41	69.49
ZNF330	0	genome.wustl.edu	37	4	142153779	142153779	+	Missense_Mutation	SNP	A	A	G			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	4	142153779	142153779	A	G	SNP	ZNF330	ENST00000262990	human	ensembl	74_37	+1	known	missense	c.671	p.K224R	1.000	pfam_NOA36	pfam_NOA36	-	no_errors	ZNF330	HGNC	ENSG00000109445	tier1	-	-	77	0	0.00	53	49	48.04
CCNDBP1	0	genome.wustl.edu	37	15	43482568	43482568	+	Missense_Mutation	SNP	G	G	C			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	15	43482568	43482568	G	C	SNP	CCNDBP1	ENST00000568507	human	ensembl	74_37	+1	known	missense	c.377	p.R126P	0.000	NULL	NULL	-	no_errors	CCNDBP1	HGNC	ENSG00000166946	tier1	-	-	63	0	0.00	8	35	81.40
EIF2AK4	0	genome.wustl.edu	37	15	40284991	40284991	+	Missense_Mutation	SNP	G	G	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	15	40284991	40284991	G	T	SNP	EIF2AK4	ENST00000263791	human	ensembl	74_37	+1	known	missense	c.2708	p.G903V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829	tier1	-	-	58	0	0.00	40	4	9.09
MEI4	0	genome.wustl.edu	37	6	78400413	78400413	+	Missense_Mutation	SNP	A	A	G			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	6	78400413	78400413	A	G	SNP	MEI4	ENST00000602452	human	ensembl	74_37	+1	novel	missense	c.25	p.R9G	1.000	NULL	NULL	-	no_errors	MEI4	HGNC	ENSG00000269964	tier1	-	-	58	0	0.00	16	36	69.23
DPY19L2P4	0	genome.wustl.edu	37	7	89754242	89754242	+	RNA	DEL	T	T	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	7	89754242	89754242	T	-	DEL	DPY19L2P4	ENST00000497063	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	DPY19L2P4	HGNC	ENSG00000235436	tier1			9	0	0.00	4	18	81.82
TAF1L	0	genome.wustl.edu	37	9	32632679	32632679	+	Missense_Mutation	SNP	G	G	C			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	9	32632679	32632679	G	C	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.2899	p.L967V	0.999	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	tier1	-	-	78	0	0.00	37	25	40.32
VSIG10L	0	genome.wustl.edu	37	19	51840497	51840497	+	Missense_Mutation	SNP	C	C	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	19	51840497	51840497	C	A	SNP	VSIG10L	ENST00000335624	human	ensembl	74_37	-1	novel	missense	c.2300	p.R767L	0.139	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	VSIG10L	HGNC	ENSG00000186806	tier1	-	-	52	0	0.00	37	4	9.76
ENSG00000224363	0	genome.wustl.edu	37	1	144090814	144090814	+	RNA	SNP	T	T	C			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	1	144090814	144090814	T	C	SNP	ENSG00000224363	ENST00000441760	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.859	-	-	-	no_errors	RP11-289H16.1	Clone_based_vega_gene	ENSG00000224363	tier1	-	-	181	1	0.55	99	9	8.33
PPP2R2B	0	genome.wustl.edu	37	5	146080608	146080608	+	Silent	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	5	146080608	146080608	C	T	SNP	PPP2R2B	ENST00000394414	human	ensembl	74_37	-1	known	silent	c.366	p.E122	1.000	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2B	HGNC	ENSG00000156475	tier1	-	-	59	0	0.00	44	14	24.14
KLHL22	0	genome.wustl.edu	37	22	20819155	20819155	+	Silent	SNP	G	G	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	22	20819155	20819155	G	T	SNP	KLHL22	ENST00000328879	human	ensembl	74_37	-1	known	silent	c.1102	p.R368	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL22	HGNC	ENSG00000099910	tier1	-	-	33	0	0.00	18	3	14.29
HERC2P3	0	genome.wustl.edu	37	15	20649520	20649520	+	RNA	SNP	T	T	C			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	15	20649520	20649520	T	C	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.925	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229	tier1	-	-	247	0	0.00	81	54	40.00
TACC2	0	genome.wustl.edu	37	10	123954634	123954634	+	Frame_Shift_Del	DEL	C	C	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	10	123954634	123954634	C	-	DEL	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	frame_shift_del	c.5914	p.E1974fs	0.994	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	tier1			42	0	0.00	23	2	8.00
CORO1C	0	genome.wustl.edu	37	12	109095036	109095036	+	Missense_Mutation	SNP	T	T	C			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	12	109095036	109095036	T	C	SNP	CORO1C	ENST00000420959	human	ensembl	74_37	-1	known	missense	c.218	p.N73S	1.000	pfam_DUF1899	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1C	HGNC	ENSG00000110880	tier1	-	-	46	0	0.00	17	27	61.36
ZBTB20	0	genome.wustl.edu	37	3	114057869	114057869	+	Missense_Mutation	SNP	G	G	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	3	114057869	114057869	G	A	SNP	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	missense	c.2209	p.H737Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722	tier1	-	-	48	0	0.00	38	4	9.52
WASH3P	0	genome.wustl.edu	37	15	102514186	102514186	+	RNA	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	15	102514186	102514186	C	T	SNP	WASH3P	ENST00000557932	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WASH3P	HGNC	ENSG00000185596	tier1	rs76042271	-	61	0	0.00	12	2	14.29
GSX1	0	genome.wustl.edu	37	13	28367862	28367862	+	Missense_Mutation	SNP	T	T	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	13	28367862	28367862	T	A	SNP	GSX1	ENST00000302945	human	ensembl	74_37	+1	known	missense	c.572	p.V191E	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GSX1	HGNC	ENSG00000169840	tier1	-	-	36	0	0.00	30	12	28.57
ENSG00000245156	0	genome.wustl.edu	37	11	66039142	66039143	+	RNA	INS	-	-	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	11	66039142	66039143	-	A	INS	ENSG00000245156	ENST00000501708	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.020	-	-	-	no_errors	RP11-867G23.3	Clone_based_vega_gene	ENSG00000245156	tier1			25	0	0.00	13	4	23.53
IDE	0	genome.wustl.edu	37	10	94228696	94228696	+	Missense_Mutation	SNP	G	G	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	10	94228696	94228696	G	T	SNP	IDE	ENST00000265986	human	ensembl	74_37	-1	known	missense	c.2260	p.H754N	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	IDE	HGNC	ENSG00000119912	tier1	-	-	75	0	0.00	6	41	87.23
FUBP1	0	genome.wustl.edu	37	1	78426184	78426185	+	RNA	INS	-	-	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	1	78426184	78426185	-	A	INS	FUBP1	ENST00000470287	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.209:0.567	-	-	-	no_errors	FUBP1	HGNC	ENSG00000162613	tier1			27	0	0.00	30	3	9.09
PAPD5	0	genome.wustl.edu	37	16	50263703	50263703	+	RNA	SNP	A	A	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	16	50263703	50263703	A	T	SNP	PAPD5	ENST00000573002	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.127	-	-	-	no_errors	PAPD5	HGNC	ENSG00000121274	tier1	-	-	53	0	0.00	44	4	8.33
FAM182A	0	genome.wustl.edu	37	20	26061831	26061831	+	RNA	DEL	G	G	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	20	26061831	26061831	G	-	DEL	FAM182A	ENST00000376398	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.232	-	-	-	no_errors	FAM182A	HGNC	ENSG00000125804	tier1			39	0	0.00	29	9	23.68
DRP2	0	genome.wustl.edu	37	X	100509889	100509889	+	Missense_Mutation	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	X	100509889	100509889	C	T	SNP	DRP2	ENST00000395209	human	ensembl	74_37	+1	known	missense	c.2156	p.S719F	1.000	pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_dom,superfamily_WW_dom,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385	tier1	-	-	20	0	0.00	13	5	27.78
ENSG00000257434	0	genome.wustl.edu	37	12	75435998	75435999	+	RNA	DEL	TA	TA	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	12	75435998	75435999	TA	-	DEL	ENSG00000257434	ENST00000547040	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-81K13.1	Clone_based_vega_gene	ENSG00000257434	tier1			27	0	0.00	22	3	12.00
TAF1L	0	genome.wustl.edu	37	9	32633008	32633008	+	Missense_Mutation	SNP	G	G	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	9	32633008	32633008	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.2570	p.S857L	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	tier1	-	-	68	0	0.00	72	31	30.10
PTHLH	0	genome.wustl.edu	37	12	28114897	28114898	+	Frame_Shift_Ins	INS	-	-	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	12	28114897	28114898	-	T	INS	PTHLH	ENST00000354417	human	ensembl	74_37	-1	known	frame_shift_ins	c.558_557	p.E187fs	0.126:0.135	NULL	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	-	no_errors	PTHLH	HGNC	ENSG00000087494	tier1			31	0	0.00	38	9	19.15
DNAH7	0	genome.wustl.edu	37	2	196619234	196619234	+	Missense_Mutation	SNP	C	C	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	2	196619234	196619234	C	A	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.11591	p.W3864L	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997	tier1	-	-	67	0	0.00	62	24	27.91
SH3BP5-AS1	0	genome.wustl.edu	37	3	15297083	15297083	+	RNA	DEL	T	T	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	3	15297083	15297083	T	-	DEL	SH3BP5-AS1	ENST00000420195	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	SH3BP5-AS1	HGNC	ENSG00000224660	tier1			28	0	0.00	16	3	15.79
T	0	genome.wustl.edu	37	6	166571913	166571913	+	Missense_Mutation	SNP	G	G	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	6	166571913	166571913	G	T	SNP	T	ENST00000296946	human	ensembl	74_37	-1	known	missense	c.1198	p.L400M	0.030	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_Brachyury,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	T	HGNC	ENSG00000164458	tier1	-	-	72	0	0.00	16	44	73.33
PRIM2	0	genome.wustl.edu	37	6	57512787	57512788	+	RNA	INS	-	-	CACCAAGGC			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	6	57512787	57512788	-	CACCAAGGC	INS	PRIM2	ENST00000389488	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.057:0.034	-	-	-	no_errors	PRIM2	HGNC	ENSG00000146143	tier1			NA	NA	NA	NA	NA	NA
ZNF704	0	genome.wustl.edu	37	8	81571895	81571895	+	Silent	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	8	81571895	81571895	C	T	SNP	ZNF704	ENST00000327835	human	ensembl	74_37	-1	known	silent	c.957	p.S319	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF704	HGNC	ENSG00000164684	tier1	-	-	109	0	0.00	70	21	23.08
HP	0	genome.wustl.edu	37	16	72093094	72093095	+	Frame_Shift_Ins	INS	-	-	CTGAGCA			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	16	72093094	72093095	-	CTGAGCA	INS	HP	ENST00000569639	human	ensembl	74_37	+1	putative	frame_shift_ins	c.272_273	p.*93fs	0.001:0.000	NULL	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	HP	HGNC	ENSG00000257017	tier1			NA	NA	NA	NA	NA	NA
ENSG00000237452	0	genome.wustl.edu	37	19	46265047	46265048	+	In_Frame_Ins	INS	-	-	TCCAGC			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	19	46265047	46265048	-	TCCAGC	INS	ENSG00000237452	ENST00000457052	human	ensembl	74_37	+1	putative	in_frame_ins	c.1356_1357	p.456in_frame_insSS	0.000:0.004	NULL	pfam_HMG_box_dom,pfam_bHLH_dom,superfamily_HMG_box_dom,superfamily_bHLH_dom,smart_HMG_box_dom,pfscan_bHLH_dom,pfscan_HMG_box_dom	-	no_errors	AC074212.3	Clone_based_vega_gene	ENSG00000237452	tier1			NA	NA	NA	NA	NA	NA
TBX5	0	genome.wustl.edu	37	12	114793374	114793374	+	Missense_Mutation	SNP	C	C	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	12	114793374	114793374	C	A	SNP	TBX5	ENST00000310346	human	ensembl	74_37	-1	known	missense	c.1520	p.G507V	0.996	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225	tier1	-	-	34	0	0.00	28	9	24.32
RABGGTB	0	genome.wustl.edu	37	1	76259678	76259714	+	RNA	DEL	CCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT	CCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	CCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT	CCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	1	76259678	76259714	CCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT	-	DEL	RABGGTB	ENST00000459697	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.001:0.001:0.000:0.002:0.005:0.008:0.009:0.007:0.005:0.003:0.003:0.001:0.001:0.002:0.001:0.001:0.001:0.000:0.000:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000	-	-	-	no_errors	RABGGTB	HGNC	ENSG00000137955	tier1			NA	NA	NA	NA	NA	NA
PINLYP	0	genome.wustl.edu	37	19	44085493	44085493	+	Missense_Mutation	SNP	G	G	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	19	44085493	44085493	G	T	SNP	PINLYP	ENST00000562255	human	ensembl	74_37	+1	known	missense	c.53	p.G18V	0.950	NULL	pfam_LY6_UPAR	-	no_errors	PINLYP	HGNC	ENSG00000234465	tier1	-	-	40	0	0.00	33	4	10.81
MIR3156-3	0	genome.wustl.edu	37	21	14778707	14778707	+	RNA	SNP	C	C	G			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	21	14778707	14778707	C	G	SNP	MIR3156-3	ENST00000580304	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR3156-3	HGNC	ENSG00000266211	tier1	-	-	79	0	0.00	13	46	77.97
KIAA1875	0	genome.wustl.edu	37	8	145162757	145162757	+	Frame_Shift_Del	DEL	A	A	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	8	145162757	145162757	A	-	DEL	KIAA1875	ENST00000534167	human	ensembl	74_37	+1	known	frame_shift_del	c.104	p.K36fs	0.010	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	KIAA1875	HGNC	ENSG00000179698	tier1			26	0	0.00	23	2	8.00
KANSL3	0	genome.wustl.edu	37	2	97276511	97276511	+	Missense_Mutation	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	2	97276511	97276511	C	T	SNP	KANSL3	ENST00000431828	human	ensembl	74_37	-1	known	missense	c.1271	p.R424Q	0.995	NULL	NULL	-	no_errors	KANSL3	HGNC	ENSG00000114982	tier1	-	-	49	0	0.00	20	21	51.22
MAN1B1	0	genome.wustl.edu	37	9	139998211	139998212	+	RNA	DEL	GT	GT	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	9	139998211	139998212	GT	-	DEL	MAN1B1	ENST00000540391	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.513:0.732	-	-	-	no_errors	MAN1B1	HGNC	ENSG00000177239	tier1			24	0	0.00	24	20	45.45
GALK1	0	genome.wustl.edu	37	17	73754413	73754413	+	Missense_Mutation	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	17	73754413	73754413	C	T	SNP	GALK1	ENST00000437911	human	ensembl	74_37	-1	known	missense	c.1075	p.V359M	1.000	pfam_GHMP_kinase_C_dom,pirsf_Galactokinase,tigrfam_Galactokinase	pfam_GalKase_gal-bd,pfam_GHMP_kinase_C_dom,pfam_GHMP_kinase_N_dom,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Mevalonate/galactokinase,prints_Galactokinase,prints_Galkinase,tigrfam_Galactokinase	-	no_errors	GALK1	HGNC	ENSG00000108479	tier1	-	-	21	0	0.00	12	3	20.00
RTKN2	0	genome.wustl.edu	37	10	64022582	64022583	+	Splice_Site	INS	-	-	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	10	64022582	64022583	-	A	INS	RTKN2	ENST00000373789	human	ensembl	74_37	-1	known	splice_site_ins	c.61-3_61-2	e2-2	1.000:0.881	-	-	-	no_errors	RTKN2	HGNC	ENSG00000182010	tier1			30	0	0.00	22	5	18.52
GMPPA	0	genome.wustl.edu	37	2	220371491	220371491	+	Nonsense_Mutation	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	2	220371491	220371491	C	T	SNP	GMPPA	ENST00000313597	human	ensembl	74_37	+1	known	nonsense	c.1234	p.R412*	1.000	NULL	pfam_NTP_transferase	-	no_errors	GMPPA	HGNC	ENSG00000144591	tier1	-	-	67	0	0.00	40	22	35.48
DYTN	0	genome.wustl.edu	37	2	207530749	207530749	+	Missense_Mutation	SNP	G	G	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	2	207530749	207530749	G	A	SNP	DYTN	ENST00000452335	human	ensembl	74_37	-1	known	missense	c.985	p.L329F	0.930	NULL	pfam_EF-hand_dom_typ2,pfam_EF-hand_dom_typ1,pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	DYTN	HGNC	ENSG00000232125	tier1	-	-	77	0	0.00	31	38	55.07
TAF1L	0	genome.wustl.edu	37	9	32632655	32632655	+	Missense_Mutation	SNP	G	G	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	9	32632655	32632655	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.2923	p.P975S	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	tier1	-	-	75	0	0.00	43	27	38.57
LPAL2	0	genome.wustl.edu	37	6	160899631	160899631	+	RNA	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	6	160899631	160899631	C	T	SNP	LPAL2	ENST00000335388	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	LPAL2	HGNC	ENSG00000213071	tier1	-	-	53	0	0.00	30	4	11.76
MIER3	0	genome.wustl.edu	37	5	56219632	56219632	+	Missense_Mutation	SNP	T	T	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	5	56219632	56219632	T	A	SNP	MIER3	ENST00000381199	human	ensembl	74_37	-1	known	missense	c.1081	p.T361S	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER3	HGNC	ENSG00000155545	tier1	-	-	71	0	0.00	52	32	38.10
SMARCA5	0	genome.wustl.edu	37	4	144449085	144449085	+	Missense_Mutation	SNP	T	T	C			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	4	144449085	144449085	T	C	SNP	SMARCA5	ENST00000283131	human	ensembl	74_37	+1	known	missense	c.866	p.M289T	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_SLIDE,pfam_ISWI_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,superfamily_ISWI_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA5	HGNC	ENSG00000153147	tier1	-	-	88	0	0.00	71	62	46.62
HLA-DPB2	0	genome.wustl.edu	37	6	33084812	33084812	+	RNA	SNP	A	A	G			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	6	33084812	33084812	A	G	SNP	HLA-DPB2	ENST00000435074	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	HLA-DPB2	HGNC	ENSG00000224557	tier1	-	-	58	0	0.00	42	6	12.50
C22orf43	0	genome.wustl.edu	37	22	23964283	23964285	+	In_Frame_Del	DEL	CAT	CAT	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	22	23964283	23964285	CAT	-	DEL	C22orf43	ENST00000317749	human	ensembl	74_37	-1	known	in_frame_del	c.379_377	p.D126in_frame_del	0.003:0.003:0.004	NULL	NULL	-	no_errors	C22orf43	HGNC	ENSG00000189269	tier1			31	0	0.00	13	8	38.10
MTA3	0	genome.wustl.edu	37	2	42808937	42808937	+	Missense_Mutation	SNP	G	G	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	2	42808937	42808937	G	T	SNP	MTA3	ENST00000430763	human	ensembl	74_37	+1	known	missense	c.203	p.R68L	0.002	pfscan_BAH_dom	pfam_BAH_dom,pfscan_BAH_dom	-	no_errors	MTA3	HGNC	ENSG00000057935	tier1	-	-	43	0	0.00	40	4	9.09
TAF1L	0	genome.wustl.edu	37	9	32632965	32632965	+	Silent	SNP	G	G	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	9	32632965	32632965	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	silent	c.2613	p.F871	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	tier1	-	-	61	0	0.00	61	25	29.07
JPH3	0	genome.wustl.edu	37	16	87637893	87637894	+	RNA	INS	-	-	CTGCTG			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	16	87637893	87637894	-	CTGCTG	INS	JPH3	ENST00000301008	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.030	-	-	-	no_errors	JPH3	HGNC	ENSG00000154118	tier1			NA	NA	NA	NA	NA	NA
KPNA3	0	genome.wustl.edu	37	13	50275994	50275994	+	Missense_Mutation	SNP	C	C	G			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	13	50275994	50275994	C	G	SNP	KPNA3	ENST00000261667	human	ensembl	74_37	-1	known	missense	c.1508	p.G503A	1.000	NULL	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA3	HGNC	ENSG00000102753	tier1	-	-	50	0	0.00	38	15	28.30
NUDT12	0	genome.wustl.edu	37	5	102891772	102891772	+	Missense_Mutation	SNP	A	A	C			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	5	102891772	102891772	A	C	SNP	NUDT12	ENST00000230792	human	ensembl	74_37	-1	known	missense	c.824	p.L275R	1.000	pfam_NADH_PPase-like_N,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,pfam_Ankyrin_rpt,pfam_Znr_NADH_PPase,pfam_NADH_PPase-like_N,superfamily_NUDIX_hydrolase_dom-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NUDT12	HGNC	ENSG00000112874	tier1	-	-	33	0	0.00	15	21	58.33
C10orf112	0	genome.wustl.edu	37	10	19778020	19778020	+	Silent	SNP	G	G	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	10	19778020	19778020	G	A	SNP	C10orf112	ENST00000454679	human	ensembl	74_37	+1	known	silent	c.3045	p.E1015	0.001	NULL	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_LDrepeatLR_classA_rpt,prints_MAM_dom	-	no_errors	C10orf112	HGNC	ENSG00000204740	tier1	-	-	66	0	0.00	40	6	13.04
C1orf101	0	genome.wustl.edu	37	1	244640895	244640895	+	Missense_Mutation	SNP	C	C	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	1	244640895	244640895	C	A	SNP	C1orf101	ENST00000366534	human	ensembl	74_37	+1	novel	missense	c.167	p.T56N	0.007	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	tier1	-	-	87	0	0.00	67	11	14.10
MANSC1	0	genome.wustl.edu	37	12	12483640	12483640	+	Missense_Mutation	SNP	C	C	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	12	12483640	12483640	C	A	SNP	MANSC1	ENST00000535902	human	ensembl	74_37	-1	known	missense	c.617	p.S206I	0.000	NULL	pfam_MANSC_N,smart_MANSC_N,pfscan_MANSC	-	no_errors	MANSC1	HGNC	ENSG00000111261	tier1	-	-	69	0	0.00	79	18	18.56
ENSG00000252258	0	genome.wustl.edu	37	18	3025549	3025549	+	RNA	SNP	T	T	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	18	3025549	3025549	T	A	SNP	ENSG00000252258	ENST00000516449	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.004	-	-	-	no_errors	SNORA70	RFAM	ENSG00000252258	tier1	-	-	9	0	0.00	7	7	50.00
PATZ1	0	genome.wustl.edu	37	22	31740562	31740562	+	Missense_Mutation	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	22	31740562	31740562	C	T	SNP	PATZ1	ENST00000266269	human	ensembl	74_37	-1	known	missense	c.1027	p.D343N	0.998	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	PATZ1	HGNC	ENSG00000100105	tier1	-	-	73	0	0.00	13	28	68.29
XYLT1	0	genome.wustl.edu	37	16	17451890	17451890	+	Silent	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	16	17451890	17451890	C	T	SNP	XYLT1	ENST00000261381	human	ensembl	74_37	-1	known	silent	c.381	p.P127	0.190	NULL	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT1	HGNC	ENSG00000103489	tier1	-	-	120	0	0.00	19	55	73.33
TP53	0	genome.wustl.edu	37	17	7579296	7579331	+	Splice_Site	DEL	CCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGG	CCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGG	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	CCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGG	CCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	17	7579296	7579331	CCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGG	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site_del	c.375+21_375+1	e4-1	0.000:0.000:0.000:0.098:0.375:0.705:0.810:0.818:0.907:0.921:0.997:1.000:1.000:0.991:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.960:0.999:0.998:0.949:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			NA	NA	NA	NA	NA	NA
GAPVD1	0	genome.wustl.edu	37	9	128025963	128025989	+	Splice_Site	DEL	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	9	128025963	128025989	CAGCACTCCATCTGTAGGTATGTCTGT	-	DEL	GAPVD1	ENST00000469528	human	ensembl	74_37	+1	known	splice_site_del	c.NULL	NULL	1.000:1.000:1.000:1.000:1.000:0.999:0.996:0.980:0.970:0.963:0.961:0.959:0.952:0.948:0.947:0.950:0.961:0.966:0.966:0.969:0.974:0.982:0.984:0.985:0.984:0.985:0.993	-	-	-	no_errors	GAPVD1	HGNC	ENSG00000165219	tier1			NA	NA	NA	NA	NA	NA
ANO5	0	genome.wustl.edu	37	11	22242681	22242681	+	Silent	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	11	22242681	22242681	C	T	SNP	ANO5	ENST00000324559	human	ensembl	74_37	+1	known	silent	c.219	p.F73	0.994	NULL	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714	tier1	-	-	60	0	0.00	8	22	73.33
UBBP4	0	genome.wustl.edu	37	17	21730946	21730946	+	Missense_Mutation	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	17	21730946	21730946	C	T	SNP	UBBP4	ENST00000578713	human	ensembl	74_37	+1	putative	missense	c.248	p.T83I	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563	tier1	-	-	73	0	0.00	45	38	45.78
BCRP2	0	genome.wustl.edu	37	22	21475923	21475923	+	RNA	SNP	G	G	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	22	21475923	21475923	G	A	SNP	BCRP2	ENST00000461808	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	BCRP2	HGNC	ENSG00000169668	tier1	-	-	26	0	0.00	11	5	31.25
CA5BP1	0	genome.wustl.edu	37	X	15721279	15721279	+	RNA	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	X	15721279	15721279	C	T	SNP	CA5BP1	ENST00000380333	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CA5BP1	HGNC	ENSG00000186312	tier1	-	-	41	0	0.00	19	18	48.65
BFAR	0	genome.wustl.edu	37	16	14738206	14738206	+	Missense_Mutation	SNP	G	G	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	16	14738206	14738206	G	A	SNP	BFAR	ENST00000261658	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	1.000	NULL	pfam_SAM_type1,pfam_Znf_C3HC4_RING-type,pfam_SAM_2,superfamily_SAM/pointed,smart_Znf_RING,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	BFAR	HGNC	ENSG00000103429	tier1	-	-	66	0	0.00	6	20	76.92
MVB12B	0	genome.wustl.edu	37	9	129243626	129243627	+	RNA	INS	-	-	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	9	129243626	129243627	-	T	INS	MVB12B	ENST00000485886	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	MVB12B	HGNC	ENSG00000196814	tier1			20	0	0.00	31	4	11.43
CEP164	0	genome.wustl.edu	37	11	117222648	117222648	+	Frame_Shift_Del	DEL	A	A	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	11	117222648	117222648	A	-	DEL	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	frame_shift_del	c.337	p.K116fs	1.000	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274	tier1			33	0	0.00	42	4	8.70
VEZF1	0	genome.wustl.edu	37	17	56056605	56056607	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	17	56056605	56056607	TGC	-	DEL	VEZF1	ENST00000581208	human	ensembl	74_37	-1	known	in_frame_del	c.1046_1044	p.Q352in_frame_del	0.940:0.945:0.948	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	VEZF1	HGNC	ENSG00000136451	tier1			44	0	0.00	29	4	12.12
PITPNM3	0	genome.wustl.edu	37	17	6380417	6380417	+	Silent	SNP	C	C	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	17	6380417	6380417	C	T	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	silent	c.1017	p.P339	0.007	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622	tier1	-	-	23	0	0.00	20	19	48.72
MT-ND5	0	genome.wustl.edu	37	MT	12418	12418	+	Frame_Shift_Del	DEL	A	A	-			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	MT	12418	12418	A	-	DEL	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	frame_shift_del	c.82	p.N30fs	NULL	tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786	tier1			40	0	0.00	7	8	53.33
ZNF800	0	genome.wustl.edu	37	7	127013660	127013660	+	Missense_Mutation	SNP	G	G	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	7	127013660	127013660	G	A	SNP	ZNF800	ENST00000265827	human	ensembl	74_37	-1	known	missense	c.1730	p.P577L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405	tier1	-	-	67	0	0.00	6	46	88.46
VWF	0	genome.wustl.edu	37	12	6078426	6078426	+	Silent	SNP	G	G	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	12	6078426	6078426	G	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	silent	c.7680	p.G2560	1.000	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	tier1	-	-	47	0	0.00	28	42	60.00
DENND2C	0	genome.wustl.edu	37	1	115130449	115130449	+	Missense_Mutation	SNP	G	G	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	1	115130449	115130449	G	T	SNP	DENND2C	ENST00000393274	human	ensembl	74_37	-1	known	missense	c.2556	p.F852L	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984	tier1	-	-	58	0	0.00	44	4	8.33
TAF1L	0	genome.wustl.edu	37	9	32632977	32632977	+	Silent	SNP	G	G	C			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	9	32632977	32632977	G	C	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	silent	c.2601	p.L867	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	tier1	-	-	59	0	0.00	57	28	32.94
CCDC63	0	genome.wustl.edu	37	12	111311658	111311659	+	Frame_Shift_Ins	INS	-	-	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	12	111311658	111311659	-	A	INS	CCDC63	ENST00000308208	human	ensembl	74_37	+1	known	frame_shift_ins	c.382_383	p.I131fs	0.975:0.872	NULL	NULL	-	no_errors	CCDC63	HGNC	ENSG00000173093	tier1			55	0	0.00	50	5	9.09
EFEMP2	0	genome.wustl.edu	37	11	65637630	65637630	+	Missense_Mutation	SNP	G	G	C			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	11	65637630	65637630	G	C	SNP	EFEMP2	ENST00000307998	human	ensembl	74_37	-1	known	missense	c.569	p.P190R	0.997	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,superfamily_TIL_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	EFEMP2	HGNC	ENSG00000172638	tier1	-	-	55	0	0.00	12	29	70.73
MT-CO1	0	genome.wustl.edu	37	MT	6656	6656	+	Missense_Mutation	SNP	C	C	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	MT	6656	6656	C	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.753	p.F251L	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	tier1	-	-	36	0	0.00	10	2	16.67
SLC35G1	0	genome.wustl.edu	37	10	95660526	95660526	+	Missense_Mutation	SNP	C	C	A			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	10	95660526	95660526	C	A	SNP	SLC35G1	ENST00000427197	human	ensembl	74_37	+1	known	missense	c.377	p.P126Q	1.000	pfam_DMT	pfam_DMT	-	no_errors	SLC35G1	HGNC	ENSG00000176273	tier1	-	-	36	0	0.00	20	4	16.67
DNAH11	0	genome.wustl.edu	37	7	21603913	21603913	+	Silent	SNP	A	A	G			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	7	21603913	21603913	A	G	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	silent	c.1092	p.L364	0.925	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	tier1	-	-	55	0	0.00	76	14	15.56
SP6	0	genome.wustl.edu	37	17	45924895	45924895	+	Missense_Mutation	SNP	G	G	T			TCGA-Z4-AAPG-01A-11D-A38Z-09	TCGA-Z4-AAPG-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5c60f83-e78d-427a-a555-336d753b9798	0a67fd48-b06f-407d-a340-b59e67c4b9c4	17	45924895	45924895	G	T	SNP	SP6	ENST00000342234	human	ensembl	74_37	-1	known	missense	c.901	p.L301M	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP6	HGNC	ENSG00000189120	tier1	-	-	51	0	0.00	35	7	16.67
