Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	ref_context	gc_content	COSMIC_n_overlapping_mutations	ESP_AvgAAsampleReadDepth	ESP_AvgEAsampleReadDepth	ESP_AvgSampleReadDepth	ESP_Chromosome	ESP_Position	ESP_TotalAAsamplesCovered	ESP_TotalEAsamplesCovered	ESP_TotalSamplesCovered	Ensembl_so_accession	Ensembl_so_term	HGNC_AccessionNumbers	HGNC_CCDSIDs	HGNC_Chromosome	HGNC_DateModified	HGNC_DateNameChanged	HGNC_DateSymbolChanged	HGNC_EnsemblGeneID	HGNC_EnsemblIDsuppliedbyEnsembl	HGNC_Genefamilydescription	HGNC_HGNCID	HGNC_LocusGroup	HGNC_LocusType	HGNC_NameSynonyms	HGNC_OMIMIDsuppliedbyNCBI	HGNC_PreviousNames	HGNC_PreviousSymbols	HGNC_PubmedIDs	HGNC_RecordType	HGNC_RefSeqsuppliedbyNCBI	HGNC_Status	HGNC_Synonyms	HGNC_UCSCIDsuppliedbyUCSC	HGNC_UniProtIDsuppliedbyUniProt	HGNC_VEGAIDs	HGVS_coding_DNA_change	HGVS_genomic_change	HGVS_protein_change	UniProt_alt_uniprot_accessions	annotation_transcript	build	ccds_id	dbNSFP_1000Gp1_AC	dbNSFP_1000Gp1_AF	dbNSFP_1000Gp1_AFR_AC	dbNSFP_1000Gp1_AFR_AF	dbNSFP_1000Gp1_AMR_AC	dbNSFP_1000Gp1_AMR_AF	dbNSFP_1000Gp1_ASN_AC	dbNSFP_1000Gp1_ASN_AF	dbNSFP_1000Gp1_EUR_AC	dbNSFP_1000Gp1_EUR_AF	dbNSFP_Ancestral_allele	dbNSFP_CADD_phred	dbNSFP_CADD_raw	dbNSFP_CADD_raw_rankscore	dbNSFP_ESP6500_AA_AF	dbNSFP_ESP6500_EA_AF	dbNSFP_Ensembl_geneid	dbNSFP_Ensembl_transcriptid	dbNSFP_FATHMM_pred	dbNSFP_FATHMM_rankscore	dbNSFP_FATHMM_score	dbNSFP_GERP_NR	dbNSFP_GERP_RS	dbNSFP_GERP_RS_rankscore	dbNSFP_Interpro_domain	dbNSFP_LRT_Omega	dbNSFP_LRT_converted_rankscore	dbNSFP_LRT_pred	dbNSFP_LRT_score	dbNSFP_LR_pred	dbNSFP_LR_rankscore	dbNSFP_LR_score	dbNSFP_MutationAssessor_pred	dbNSFP_MutationAssessor_rankscore	dbNSFP_MutationAssessor_score	dbNSFP_MutationTaster_converted_rankscore	dbNSFP_MutationTaster_pred	dbNSFP_MutationTaster_score	dbNSFP_Polyphen2_HDIV_pred	dbNSFP_Polyphen2_HDIV_rankscore	dbNSFP_Polyphen2_HDIV_score	dbNSFP_Polyphen2_HVAR_pred	dbNSFP_Polyphen2_HVAR_rankscore	dbNSFP_Polyphen2_HVAR_score	dbNSFP_RadialSVM_pred	dbNSFP_RadialSVM_rankscore	dbNSFP_RadialSVM_score	dbNSFP_Reliability_index	dbNSFP_SIFT_converted_rankscore	dbNSFP_SIFT_pred	dbNSFP_SIFT_score	dbNSFP_SLR_test_statistic	dbNSFP_SiPhy_29way_logOdds	dbNSFP_SiPhy_29way_logOdds_rankscore	dbNSFP_SiPhy_29way_pi	dbNSFP_UniSNP_ids	dbNSFP_Uniprot_aapos	dbNSFP_Uniprot_acc	dbNSFP_Uniprot_id	dbNSFP_aaalt	dbNSFP_aapos	dbNSFP_aapos_FATHMM	dbNSFP_aapos_SIFT	dbNSFP_aaref	dbNSFP_cds_strand	dbNSFP_codonpos	dbNSFP_folddegenerate	dbNSFP_genename	dbNSFP_hg18_pos1coor	dbNSFP_phastCons100way_vertebrate	dbNSFP_phastCons100way_vertebrate_rankscore	dbNSFP_phastCons46way_placental	dbNSFP_phastCons46way_placental_rankscore	dbNSFP_phastCons46way_primate	dbNSFP_phastCons46way_primate_rankscore	dbNSFP_phyloP100way_vertebrate	dbNSFP_phyloP100way_vertebrate_rankscore	dbNSFP_phyloP46way_placental	dbNSFP_phyloP46way_placental_rankscore	dbNSFP_phyloP46way_primate	dbNSFP_phyloP46way_primate_rankscore	dbNSFP_refcodon	gencode_transcript_name	gencode_transcript_status	gencode_transcript_tags	gencode_transcript_type	gene_type	havana_transcript	init_n_lod	init_t_lod	isArtifactMode	n_alt_count	n_ref_count	oxoGCut	pox	pox_cutoff	qox	refseq_mrna_id	t_alt_count	t_lod_fstar	t_ref_count	tumor_f
LINC00174	0	broad.mit.edu	hg19	7	65842570	65842570	+	RNA	SNP	A	A	T			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr7:65842570A>T	ENST00000421767.1	-	0	3162					NR_026873.1																GGCTTATTTCAGGACGATTTG	0.557	0	37.0	33.0	34.0	7	65842570	2203	4300	6503			AK091213		7q11.21	2013-12-05	2013-12-05	2013-12-05	ENSG00000179406	ENSG00000179406	"""Long non-coding RNAs"""	27788	non-coding RNA	RNA, long non-coding			"""non-protein coding RNA 174"""	NCRNA00174		Standard	NR_026873	Approved		uc003tux.4		OTTHUMG00000156590		7.37:g.65842570A>T			ENST00000421767.1	37																																																																																				LINC00174-001	KNOWN	basic	lincRNA	lincRNA	OTTHUMT00000344721.1		10.694738	0	10	30	0	0	1	0	NR_026873	4	11.431434	11	0.266667
TMEM68	137695	broad.mit.edu	hg19	8	56675150	56675150	+	Silent	SNP	G	G	A			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr8:56675150G>A	ENST00000521229.1	-	3	581	c.369C>T	c.(367-369)tgC>tgT	p.C123C	TMEM68_ENST00000522576.1_Silent_p.C123C|TMEM68_ENST00000434581.2_Intron|TMEM68_ENST00000523073.1_Intron|TMEM68_ENST00000519784.1_Intron|TMEM68_ENST00000334667.2_Intron			Q96MH6	TMM68_HUMAN	transmembrane protein 68	0			integral to membrane	acyltransferase activity	NS(1)|kidney(1)|lung(2)|ovary(1)|skin(1)	6			Epithelial(17;0.000361)|all cancers(17;0.00326)		TTCCAATGCAGCACACATGAA	0.403	0	81.0	74.0	77.0	8	56675150	2203	4300	6503	SO:0001819	synonymous_variant	AK056932	CCDS6161.1, CCDS75740.1, CCDS75741.1, CCDS75742.1	8q12.1	2011-12-12			ENSG00000167904	ENSG00000167904		26510	protein-coding gene	gene with protein product					12477932	Standard	XM_005251150	Approved	FLJ32370	uc003xsh.1	Q96MH6	OTTHUMG00000164293	ENST00000521229.1:c.369C>T	8.37:g.56675150G>A		Q658X6|Q8WUD2	ENST00000521229.1	37																																																																																				TMEM68-003	KNOWN	basic	protein_coding	protein_coding	OTTHUMT00000378149.1		-16.388383	0	6	71	0	0	1	0	NM_152417	4	8.117271	102	0.037736
NR3C1	2908	broad.mit.edu	hg19	5	142780179	142780179	+	Missense_Mutation	SNP	G	G	A			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr5:142780179G>A	ENST00000343796.2	-	2	1219	c.226C>T	c.(226-228)Cca>Tca	p.P76S	NR3C1_ENST00000394466.2_Missense_Mutation_p.P76S|NR3C1_ENST00000416954.2_Intron|NR3C1_ENST00000394464.2_Missense_Mutation_p.P76S|NR3C1_ENST00000504572.1_Missense_Mutation_p.P76S|NR3C1_ENST00000424646.2_Missense_Mutation_p.P76S|NR3C1_ENST00000503201.1_Missense_Mutation_p.P76S|NR3C1_ENST00000231509.3_Missense_Mutation_p.P76S|NR3C1_ENST00000415690.2_Missense_Mutation_p.P76S	NM_001018074.1|NM_001018075.1|NM_001018077.1	NP_001018084.1|NP_001018085.1|NP_001018087.1	P04150	GCR_HUMAN	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	76	Modulating.	chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding	breast(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(10)|lung(7)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	35		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		GACAGATCTGGCTGCTGCGCA	0.493	0	132.0	145.0	140.0	5	142780179	2203	4300	6503	SO:0001583	missense	X03225	CCDS4278.1, CCDS34258.1, CCDS47298.1	5q31-q32	2013-01-16	2002-08-27		ENSG00000113580	ENSG00000113580	"""Nuclear hormone receptors"""	7978	protein-coding gene	gene with protein product		138040	"""nuclear receptor subfamily 3, group C, member 1"""	GRL	2867473	Standard	NM_001204258	Approved	GR	uc003lnb.3	P04150	OTTHUMG00000129677	ENST00000231509.3:c.226C>T	5.37:g.142780179G>A	ENSP00000231509:p.Pro76Ser	A0ZXF9|B0LPG8|D3DQF4|P04151|Q53EP5|Q6N0A4	ENST00000231509.3	37	CCDS34258.1	.	.	.	.	.	.	.	.	.	.	G	18.82	3.705615	0.68615	.	.	ENSG00000113580	ENST00000394464;ENST00000343796;ENST00000361001;ENST00000415690;ENST00000424646;ENST00000504572;ENST00000394466;ENST00000231509;ENST00000503201;ENST00000510170;ENST00000508760;ENST00000502892;ENST00000514699;ENST00000502500	T;T;T;T;T;T;T;T;T;T;T;T;T	0.30981	1.51;1.51;1.51;1.51;1.51;1.51;1.51;1.51;1.51;1.51;1.51;1.51;1.51	4.84	4.84	0.62591	.	0.000000	0.85682	D	0.000000	T	0.49864	0.1582	M	0.80746	2.51	0.80722	D	1	P;B;P	0.48998	0.918;0.201;0.756	P;B;P	0.50708	0.648;0.26;0.524	T	0.57225	-0.7848	10	0.54805	T	0.06	.	18.3334	0.90279	0.0:0.0:1.0:0.0	.	76;76;76	E5KQF5;P04150;E5KQF6	.;GCR_HUMAN;.	S	76	ENSP00000377977:P76S;ENSP00000343205:P76S;ENSP00000387672:P76S;ENSP00000405282:P76S;ENSP00000422518:P76S;ENSP00000377979:P76S;ENSP00000231509:P76S;ENSP00000427672:P76S;ENSP00000424747:P76S;ENSP00000425313:P76S;ENSP00000420856:P76S;ENSP00000426478:P76S;ENSP00000425374:P76S	ENSP00000231509:P76S	P	-	1	0	NR3C1	142760372	1.000000	0.71417	0.999000	0.59377	0.898000	0.52572	6.173000	0.71937	2.400000	0.81607	0.561000	0.74099	CCA	NR3C1-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000251879.1		154.332149	0	-45	170	0	0	1	0		50	155.058844	70	0.416667
MEGF8	1954	broad.mit.edu	hg19	19	42857739	42857739	+	Missense_Mutation	SNP	G	G	A			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr19:42857739G>A	ENST00000334370.4	+	20	4107	c.3472G>A	c.(3472-3474)Gac>Aac	p.D1158N	MEGF8_ENST00000251268.6_Missense_Mutation_p.D1225N	NM_001410.2	NP_001401.2	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	1225			integral to membrane	calcium ion binding|structural molecule activity	breast(2)|cervix(1)|endometrium(11)|kidney(2)|large_intestine(9)|lung(20)|ovary(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	50		Prostate(69;0.00682)			TGGCCACTGCGACAACCTCAG	0.692	0	13.0	12.0	12.0	19	42857739	2197	4282	6479	SO:0001583	missense	AB011541	CCDS12604.2, CCDS62693.1	19q13.2	2011-11-24	2006-03-31	2006-03-31	ENSG00000105429	ENSG00000105429		3233	protein-coding gene	gene with protein product	"""HBV pre s2 binding protein 1"""	604267	"""EGF-like-domain, multiple 4"", ""chromosome 19 open reading frame 49"""	EGFL4, C19orf49	9693030	Standard	NM_001410	Approved	SBP1, FLJ22365	uc002otm.5	Q7Z7M0	OTTHUMG00000150342	ENST00000334370.4:c.3472G>A	19.37:g.42857739G>A	ENSP00000334219:p.Asp1158Asn	A8KAY0|O75097	ENST00000334370.4	37	CCDS12604.2	.	.	.	.	.	.	.	.	.	.	G	15.97	2.989551	0.53934	.	.	ENSG00000105429	ENST00000334370;ENST00000251268	T;T	0.62941	-0.01;-0.01	5.47	4.37	0.52481	EGF-like, laminin (3);	0.065812	0.64402	D	0.000011	T	0.62307	0.2417	L	0.37850	1.14	0.80722	D	1	D;D	0.67145	0.996;0.987	P;P	0.58331	0.837;0.597	T	0.54221	-0.8326	10	0.11182	T	0.66	-36.3793	13.4243	0.61015	0.0:0.1588:0.8412:0.0	.	1225;1158	Q7Z7M0;Q7Z7M0-2	MEGF8_HUMAN;.	N	1158;1225	ENSP00000334219:D1158N;ENSP00000251268:D1225N	ENSP00000251268:D1225N	D	+	1	0	MEGF8	47549579	0.999000	0.42202	0.998000	0.56505	0.976000	0.68499	3.172000	0.50832	2.580000	0.87095	0.561000	0.74099	GAC	MEGF8-001	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000317695.1		9.725300	0	6	13	0	0	1	0	NM_001410	3	9.725300	3	0.500000
PRKD1	5587	broad.mit.edu	hg19	14	30108044	30108044	+	Nonsense_Mutation	SNP	G	G	A			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr14:30108044G>A	ENST00000331968.5	-	5	992	c.763C>T	c.(763-765)Cga>Tga	p.R255*	PRKD1_ENST00000551644.1_5'UTR|PRKD1_ENST00000415220.2_Nonsense_Mutation_p.R263*	NM_002742.2	NP_002733.2	Q15139	KPCD1_HUMAN	protein kinase D1	255		cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity	NS(1)|breast(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(21)|lung(32)|ovary(2)|prostate(1)|skin(4)|urinary_tract(2)	78	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)	TGAATTGGTCGTCCAATGTAT	0.418	0	98.0	97.0	97.0	14	30108044	2203	4300	6503	SO:0001587	stop_gained		CCDS9637.1	14q11	2013-01-10	2004-10-28	2004-10-30	ENSG00000184304	ENSG00000184304	"""Pleckstrin homology (PH) domain containing"""	9407	protein-coding gene	gene with protein product		605435	"""protein kinase C, mu"""	PRKCM	8119958, 10965134	Standard	NM_002742	Approved	PKCM, PKD, PKC-mu	uc001wqh.3	Q15139	OTTHUMG00000140203	ENST00000331968.5:c.763C>T	14.37:g.30108044G>A	ENSP00000333568:p.Arg255*	A6NL64|B2RAF6	ENST00000331968.5	37	CCDS9637.1	.	.	.	.	.	.	.	.	.	.	G	37	6.102455	0.97286	.	.	ENSG00000184304	ENST00000331968;ENST00000415220	.	.	.	5.45	3.54	0.40534	.	0.000000	0.85682	D	0.000000	.	.	.	.	.	.	0.80722	A	1	.	.	.	.	.	.	.	.	.	.	0.02654	T	1	-15.9893	14.728	0.69360	0.0:0.0:0.7502:0.2498	.	.	.	.	X	255;263	.	ENSP00000333568:R255X	R	-	1	2	PRKD1	29177795	1.000000	0.71417	0.987000	0.45799	0.862000	0.49288	3.985000	0.56930	0.712000	0.32039	0.650000	0.86243	CGA	PRKD1-001	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000276611.2		69.802672	0	2	105	0	0	1	0	NM_002742	23	70.063508	31	0.425926
FBXL13	222235	broad.mit.edu	hg19	7	102669190	102669190	+	Nonsense_Mutation	SNP	C	C	T			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr7:102669190C>T	ENST00000393772.2	-	4	500	c.74G>A	c.(73-75)tGg>tAg	p.W25*	FBXL13_ENST00000379305.3_Nonsense_Mutation_p.W25*|FBXL13_ENST00000313221.4_Nonsense_Mutation_p.W25*|FBXL13_ENST00000455112.2_Nonsense_Mutation_p.W25*|FBXL13_ENST00000471074.1_Intron|FBXL13_ENST00000379308.3_Nonsense_Mutation_p.W25*|FBXL13_ENST00000456695.1_Nonsense_Mutation_p.W25*|FBXL13_ENST00000436908.1_Nonsense_Mutation_p.W25*|FBXL13_ENST00000379306.3_Nonsense_Mutation_p.W25*			Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13	25					NS(1)|breast(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(7)|lung(9)|skin(3)|stomach(1)	27					TATGTCTCTCCAAGTGCTGCA	0.318	0	79.0	71.0	74.0	7	102669190	2203	4300	6503	SO:0001587	stop_gained	BC031285	CCDS5726.1, CCDS47678.1, CCDS75649.1	7q22.1	2014-07-18			ENSG00000161040	ENSG00000161040	"""F-boxes / Leucine-rich repeats"""	21658	protein-coding gene	gene with protein product		609080				Standard	NM_145032	Approved	MGC21636, Fbl13	uc003vaq.2	Q8NEE6	OTTHUMG00000157224	ENST00000313221.4:c.74G>A	7.37:g.102669190C>T	ENSP00000321927:p.Trp25*	C9J565|C9J566|Q6UVW7|Q6UVW8|Q75MN5|Q86UJ5|Q8N7Y4|Q8TCL2|Q8WUF9|Q8WUG0	ENST00000313221.4	37	CCDS5726.1	.	.	.	.	.	.	.	.	.	.	C	37	6.582179	0.97680	.	.	ENSG00000161040	ENST00000393772;ENST00000379308;ENST00000379306;ENST00000379305;ENST00000436908;ENST00000313221;ENST00000456695;ENST00000455112;ENST00000440067	.	.	.	3.94	3.94	0.45596	.	0.000000	0.64402	D	0.000019	.	.	.	.	.	.	0.80722	A	1	.	.	.	.	.	.	.	.	.	.	0.02654	T	1	.	11.7814	0.52018	0.0:1.0:0.0:0.0	.	.	.	.	X	25;25;25;25;25;25;25;25;115	.	ENSP00000321927:W25X	W	-	2	0	FBXL13	102456426	0.998000	0.40836	0.922000	0.36590	0.575000	0.36095	2.871000	0.48459	2.489000	0.83994	0.460000	0.39030	TGG	FBXL13-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000348001.1		2.466144	0	-19	75	0	0	1	0	NM_145032	4	9.631055	39	0.093023
EXD1	161829	broad.mit.edu	hg19	15	41501729	41501729	+	Silent	SNP	T	T	C			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr15:41501729T>C	ENST00000314992.5	-	5	520	c.330A>G	c.(328-330)gtA>gtG	p.V110V	EXD1_ENST00000458580.2_Silent_p.V168V	NM_152596.2	NP_689809.2	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1	110	3'-5' exonuclease.	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding	large_intestine(5)|liver(1)|lung(4)|ovary(2)|prostate(2)|skin(2)	16					CATGGCGACATACATTCGCTC	0.378	0	68.0	62.0	64.0	15	41501729	2203	4300	6503	SO:0001819	synonymous_variant	BC030628	CCDS10072.1, CCDS66738.1	15q15.1	2009-02-24	2009-02-24	2009-02-24	ENSG00000178997	ENSG00000178997		28507	protein-coding gene	gene with protein product			"""exonuclease 3'-5' domain-like 1"""	EXDL1	12477932	Standard	NM_001286441	Approved	MGC33637	uc001znk.3	Q8NHP7	OTTHUMG00000130232	ENST00000458580.2:c.504A>G	15.37:g.41501729T>C		A8K909|B7Z839|Q6ZW94	ENST00000458580.2	37																																																																																				EXD1-002	PUTATIVE	basic|appris_principal	protein_coding	protein_coding	OTTHUMT00000418943.1		32.881280	0	2	53	0	0	1	0	NM_152596	12	35.605128	36	0.250000
CHST2	9435	broad.mit.edu	hg19	3	142840445	142840445	+	Missense_Mutation	SNP	C	C	T			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr3:142840445C>T	ENST00000309575.3	+	2	2171	c.787C>T	c.(787-789)Ctc>Ttc	p.L263F		NM_004267.4	NP_004258.2	Q9Y4C5	CHST2_HUMAN	carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2	263		inflammatory response|multicellular organismal development|N-acetylglucosamine metabolic process|sulfur compound metabolic process	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity	breast(1)|central_nervous_system(1)|endometrium(2)|large_intestine(1)|lung(12)|ovary(3)|prostate(2)	22					CTCGTCACCACTCTGCCCCGC	0.672	0	20.0	24.0	23.0	3	142840445	2201	4299	6500	SO:0001583	missense	BC042160	CCDS3129.1	3q24	2007-03-14			ENSG00000175040	ENSG00000175040	"""Sulfotransferases, membrane-bound"""	1970	protein-coding gene	gene with protein product		603798			10049591	Standard	NM_004267	Approved	C6ST	uc003evm.3	Q9Y4C5	OTTHUMG00000159351	ENST00000309575.3:c.787C>T	3.37:g.142840445C>T	ENSP00000307911:p.Leu263Phe	D3DNG5|Q2M370|Q9GZN5|Q9UED5|Q9Y6F2	ENST00000309575.3	37	CCDS3129.1	.	.	.	.	.	.	.	.	.	.	C	14.04	2.415669	0.42817	.	.	ENSG00000175040	ENST00000309575	D	0.96459	-4.02	4.17	4.17	0.49024	Sulfotransferase domain (1);	0.000000	0.56097	U	0.000026	D	0.96291	0.8790	L	0.36672	1.1	0.58432	D	0.999996	D	0.76494	0.999	D	0.79784	0.993	D	0.94391	0.7614	10	0.14656	T	0.56	-16.2734	16.6656	0.85252	0.0:1.0:0.0:0.0	.	263	Q9Y4C5	CHST2_HUMAN	F	263	ENSP00000307911:L263F	ENSP00000307911:L263F	L	+	1	0	CHST2	144323135	1.000000	0.71417	0.771000	0.31576	0.403000	0.30841	4.781000	0.62389	2.152000	0.67230	0.407000	0.27541	CTC	CHST2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000354850.1		25.904978	0	-11	13	0	0	1	0	NM_004267	8	26.741604	2	0.800000
ARMC9	80210	ucsc.edu	hg19	2	232135739	232135739	+	Silent	SNP	G	G	A			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224																										ACGTGGTGCGGCAGTACATGG	0.483	0	110.0	90.0	97.0	2	232135739	2203	4300	6503	SO:0001819	synonymous_variant	BC004514	CCDS2484.1, CCDS74666.1	2q37.1	2013-02-14			ENSG00000135931	ENSG00000135931	"""Armadillo repeat containing"""	20730	protein-coding gene	gene with protein product					11347906	Standard	NM_025139	Approved	FLJ12584, KIAA1868, ARM, KU-MEL-1	uc031rrs.1	Q7Z3E5	OTTHUMG00000133229	ENST00000349938.4:c.1164G>A	2.37:g.232135739G>A		Q53TI3|Q6P162|Q7L594|Q86WG2|Q96JF9|Q9H9R8	ENST00000349938.4	37	CCDS2484.1	.	.	.	.	.	.	.	.	.	.	G	9.289	1.050194	0.19827	.	.	ENSG00000135931	ENST00000424740	.	.	.	4.56	-5.45	0.02616	.	.	.	.	.	T	0.39759	0.1090	.	.	.	0.80722	D	1	.	.	.	.	.	.	T	0.38693	-0.9649	4	.	.	.	-17.8376	4.1663	0.10308	0.2993:0.4623:0.1412:0.0973	.	.	.	.	D	91	.	.	G	+	2	0	ARMC9	231843983	0.021000	0.18746	0.809000	0.32408	0.843000	0.47879	-0.908000	0.04063	-1.087000	0.03081	-0.769000	0.03391	GGC	ARMC9-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000256966.3				-5	50					NM_025139	4		37	
SYNE1	23345	broad.mit.edu	hg19	6	152763338	152763338	+	Nonsense_Mutation	SNP	G	G	A			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr6:152763338G>A	ENST00000367255.5	-	31	4481	c.3880C>T	c.(3880-3882)Cag>Tag	p.Q1294*	SYNE1_ENST00000341594.5_Nonsense_Mutation_p.Q1360*|SYNE1_ENST00000448038.1_Nonsense_Mutation_p.Q1301*|SYNE1_ENST00000265368.4_Nonsense_Mutation_p.Q1294*|SYNE1_ENST00000423061.1_Nonsense_Mutation_p.Q1301*|SYNE1_ENST00000367253.4_Nonsense_Mutation_p.Q1294*|SYNE1_ENST00000367248.3_Nonsense_Mutation_p.Q1284*|SYNE1_ENST00000413186.2_Nonsense_Mutation_p.Q1294*	NM_182961.3	NP_892006.3	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1294		cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding	NS(3)|biliary_tract(1)|breast(17)|central_nervous_system(21)|cervix(3)|endometrium(27)|haematopoietic_and_lymphoid_tissue(4)|kidney(16)|large_intestine(138)|liver(1)|lung(190)|ovary(11)|pancreas(5)|prostate(12)|skin(20)|stomach(3)|upper_aerodigestive_tract(33)|urinary_tract(19)	524		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)	GCGATCTGCTGCTGCACATCT	0.542	0	81.0	71.0	74.0	6	152763338	2203	4300	6503	SO:0001587	stop_gained	AB018339	CCDS5235.1, CCDS5236.1, CCDS5236.2	6q24.2-q25.3	2014-09-17			ENSG00000131018	ENSG00000131018		17089	protein-coding gene	gene with protein product	"""myocyte nuclear envelope protein 1"", ""nuclear envelope spectrin repeat-1"""	608441	"""chromosome 6 open reading frame 98"""	C6orf98	9872452, 10878022	Standard	NM_182961	Approved	SYNE-1B, KIAA0796, 8B, Nesprin-1, enaptin, MYNE1, CPG2, dJ45H2.2, SCAR8, ARCA1, Nesp1	uc003qou.4	Q8NF91	OTTHUMG00000015841	ENST00000367255.5:c.3880C>T	6.37:g.152763338G>A	ENSP00000356224:p.Gln1294*	E7EQI5|O94890|Q5JV19|Q5JV22|Q8N9P7|Q8TCP1|Q8WWW6|Q8WWW7|Q8WXF6|Q96N17|Q9C0A7|Q9H525|Q9H526|Q9NS36|Q9NU50|Q9UJ06|Q9UJ07|Q9ULF8	ENST00000367255.5	37	CCDS5236.2	.	.	.	.	.	.	.	.	.	.	G	43	10.124505	0.99342	.	.	ENSG00000131018	ENST00000367255;ENST00000423061;ENST00000265368;ENST00000448038;ENST00000341594;ENST00000367253;ENST00000367248;ENST00000413186	.	.	.	5.41	2.39	0.29439	.	0.237208	0.29551	N	0.011825	.	.	.	.	.	.	0.80722	D	1	.	.	.	.	.	.	.	.	.	.	0.06236	T	0.91	.	13.1528	0.59498	0.0:0.314:0.5746:0.1115	.	.	.	.	X	1294;1301;1294;1301;1360;1294;1284;1294	.	ENSP00000265368:Q1294X	Q	-	1	0	SYNE1	152805031	1.000000	0.71417	1.000000	0.80357	0.369000	0.29798	1.698000	0.37794	0.710000	0.31997	0.650000	0.86243	CAG	SYNE1-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000334755.2		42.544245	0	-10	77	0	0	1	0	NM_182961	17	45.557482	46	0.269841
GNA11	2767	broad.mit.edu	hg19	19	3118942	3118942	+	Missense_Mutation	SNP	A	A	T			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr19:3118942A>T	ENST00000078429.4	+	5	868	c.626A>T	c.(625-627)cAg>cTg	p.Q209L	GNA11_ENST00000586180.1_3'UTR|AC005262.3_ENST00000587701.1_RNA	NM_002067.2	NP_002058.2	P29992	GNA11_HUMAN	guanine nucleotide binding protein (G protein), alpha 11 (Gq class)	209		activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation|regulation of action potential	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity	endometrium(2)|eye(132)|kidney(1)|large_intestine(2)|lung(1)|meninges(5)|ovary(1)|prostate(1)|skin(16)	161		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.79e-05)|OV - Ovarian serous cystadenocarcinoma(105;2.68e-113)|Epithelial(107;1.22e-111)|all cancers(105;5.78e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00141)|STAD - Stomach adenocarcinoma(1328;0.181)	GTGGGGGGCCAGCGGTCGGAG	0.612	82	104.0	89.0	94.0	19	3118942	2203	4300	6503	SO:0001583	missense	AF493900	CCDS12103.1	19p13.3	2014-02-04			ENSG00000088256	ENSG00000088256		4379	protein-coding gene	gene with protein product		139313	"""hypocalciuric hypercalcemia 2"""	HHC2	1302014, 23802516	Standard	NM_002067	Approved	FBH, FBH2, FHH2	uc002lxd.3	P29992	OTTHUMG00000180631	ENST00000078429.4:c.626A>T	19.37:g.3118942A>T	ENSP00000078429:p.Gln209Leu	O15109|Q14350|Q6IB00	ENST00000078429.4	37	CCDS12103.1	.	.	.	.	.	.	.	.	.	.	.	15.05	2.718086	0.48622	.	.	ENSG00000088256	ENST00000078429	D	0.91237	-2.81	3.26	3.26	0.37387	.	0.000000	0.64402	U	0.000006	D	0.96950	0.9004	H	0.99357	4.53	0.80722	D	1	D	0.59767	0.986	D	0.68483	0.958	D	0.96823	0.9605	10	0.87932	D	0	.	10.7338	0.46113	1.0:0.0:0.0:0.0	.	209	P29992	GNA11_HUMAN	L	209	ENSP00000078429:Q209L	ENSP00000078429:Q209L	Q	+	2	0	GNA11	3069942	1.000000	0.71417	0.438000	0.26821	0.027000	0.11550	9.104000	0.94239	1.256000	0.44068	0.379000	0.24179	CAG	GNA11-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000452261.2		23.462308	0	3	84	0	0	1	0	NM_002067	9	24.684178	22	0.290323
HIRA	7290	broad.mit.edu	hg19	22	19343354	19343354	+	Silent	SNP	C	C	T			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr22:19343354C>T	ENST00000263208.5	-	21	2746	c.2490G>A	c.(2488-2490)acG>acA	p.T830T	HIRA_ENST00000340170.4_Silent_p.T623T|HIRA_ENST00000541063.1_Silent_p.T786T|HIRA_ENST00000546308.1_Intron	NM_003325.3	NP_003316.3	P54198	HIRA_HUMAN	histone cell cycle regulator	830	Interaction with histone H4.	chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity	autonomic_ganglia(1)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|lung(14)|ovary(2)|prostate(1)|skin(1)	37	Colorectal(54;0.0993)				TTCCATGCTGCGTCAGCAAGA	0.478	0	165.0	114.0	131.0	22	19343354	2203	4300	6503	SO:0001819	synonymous_variant	X75296	CCDS13759.1	22q11.2	2013-05-03	2013-05-03		ENSG00000100084	ENSG00000100084	"""WD repeat domain containing"""	4916	protein-coding gene	gene with protein product	"""DiGeorge critical region gene 1"""	600237	"""HIR (histone cell cycle regulation defective) homolog A (S. cerevisiae)"", ""HIR histone cell cycle regulation defective homolog A (S. cerevisiae)"""	TUPLE1	8111380, 7633437, 9731536	Standard	NM_003325	Approved	DGCR1, TUP1	uc002zpf.1	P54198	OTTHUMG00000150134	ENST00000263208.5:c.2490G>A	22.37:g.19343354C>T		Q05BU9|Q8IXN2	ENST00000263208.5	37	CCDS13759.1																																																																																			HIRA-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000316488.2		23.591709	0	10	51	0	0	1	0	NM_003325	8	24.311082	17	0.320000
H2AFZ	3015	broad.mit.edu	hg19	4	100870470	100870470	+	Missense_Mutation	SNP	G	G	A			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr4:100870470G>A	ENST00000296417.5	-	3	372	c.155C>T	c.(154-156)gCt>gTt	p.A52V	H2AFZ_ENST00000529158.1_5'UTR	NM_002106.3	NP_002097.1	P0C0S5	H2AZ_HUMAN	H2A histone family, member Z	52		nucleosome assembly	nucleosome|nucleus	DNA binding	breast(1)|endometrium(3)|lung(1)	5				OV - Ovarian serous cystadenocarcinoma(123;2.32e-08)	GCTGTACACAGCGGCAGTCGC	0.542	0	53.0	51.0	51.0	4	100870470	2203	4300	6503	SO:0001583	missense	X52317	CCDS3654.1	4q23	2011-01-27			ENSG00000164032	ENSG00000164032	"""Histones / Replication-independent"""	4741	protein-coding gene	gene with protein product		142763		H2AZ	1697587	Standard	XM_005262971	Approved	H2A.Z	uc003hvo.1	P0C0S5	OTTHUMG00000131048	ENST00000296417.5:c.155C>T	4.37:g.100870470G>A	ENSP00000296417:p.Ala52Val	B2RD56|P17317|Q6I9U0	ENST00000296417.5	37	CCDS3654.1	.	.	.	.	.	.	.	.	.	.	G	29.4	4.999941	0.93227	.	.	ENSG00000164032	ENST00000296417	T	0.65178	-0.14	3.75	3.75	0.43078	Histone-fold (2);Histone core (1);Histone H2A (2);	0.000000	0.85682	D	0.000000	T	0.75317	0.3833	M	0.78637	2.42	0.80722	D	1	D	0.67145	0.996	P	0.58077	0.832	T	0.81028	-0.1118	10	0.72032	D	0.01	.	15.7657	0.78126	0.0:0.0:1.0:0.0	.	52	P0C0S5	H2AZ_HUMAN	V	52	ENSP00000296417:A52V	ENSP00000296417:A52V	A	-	2	0	H2AFZ	101089493	1.000000	0.71417	1.000000	0.80357	0.907000	0.53573	6.839000	0.75364	1.925000	0.55765	0.650000	0.86243	GCT	H2AFZ-001	KNOWN	basic|appris_principal|exp_conf|CCDS	protein_coding	protein_coding	OTTHUMT00000253695.1		38.163812	0	14	55	0	0	1	0	NM_002106	13	38.885025	24	0.351351
SH2D5	400745	broad.mit.edu	hg19	1	21051092	21051092	+	Frame_Shift_Del	DEL	G	G	-			TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr1:21051092delG	ENST00000375031.1	-	5	799	c.175delC	c.(175-177)cagfs	p.Q59fs	SH2D5_ENST00000444387.2_Frame_Shift_Del_p.Q143fs|SH2D5_ENST00000460804.1_5'UTR	NM_001103160.1	NP_001096630.1	Q6ZV89	SH2D5_HUMAN	SH2 domain containing 5	59					lung(4)|prostate(1)|upper_aerodigestive_tract(1)	6		Colorectal(325;3.46e-05)|all_lung(284;5.32e-05)|Lung NSC(340;5.51e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.17e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000142)|GBM - Glioblastoma multiforme(114;0.000465)|Kidney(64;0.000476)|STAD - Stomach adenocarcinoma(196;0.00303)|KIRC - Kidney renal clear cell carcinoma(64;0.00634)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)	TAAGCCAGCTGGAAAGAGCGG	0.657	0	13.0	16.0	15.0	1	21051092	2019	4183	6202	SO:0001589	frameshift_variant	AK124869, AK123236	CCDS41280.1, CCDS44080.1	1p36.12	2008-02-05			ENSG00000189410	ENSG00000189410		28819	protein-coding gene	gene with protein product						Standard	NM_001103161	Approved		uc009vpy.1	Q6ZV89	OTTHUMG00000002620	ENST00000444387.2:c.427delC	1.37:g.21051092delG	ENSP00000406026:p.Gln143fs	B7Z3W3|Q5SSJ2	ENST00000444387.2	37	CCDS44080.1																																																																																			SH2D5-003	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000007455.2	.	.		2	6					XM_375698	2		4	0.33
BAP1	8314	broad.mit.edu	hg19	3	52440322	52440363	+	In_Frame_Del	DEL	TGGCCTCATACTTGATCCTGCGGTCGGGCACCACTGCCATCA	TGGCCTCATACTTGATCCTGCGGTCGGGCACCACTGCCATCA	-	rs138180791		TCGA-V4-A9EV-01A-11D-A39W-08	TCGA-V4-A9EV-10A-01D-A39Z-08							Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71f74e00-8749-4728-be0c-8daf403005be	91f22713-25ca-4cf0-8c3e-ded4ea72d224	g.chr3:52440322_52440363delTGGCCTCATACTTGATCCTGCGGTCGGGCACCACTGCCATCA	ENST00000460680.1	-	9	1160_1201	c.689_730delTGATGGCAGTGGTGCCCGACCGCAGGATCAAGTATGAGGCCA	c.(688-732)ctgatggcagtggtgcccgaccgcaggatcaagtatgaggccagg>cgg	p.LMAVVPDRRIKYEA230del	BAP1_ENST00000296288.5_Splice_Site_p.DGSGAR221del	NM_004656.2	NP_004647.1	Q99496	RING2_HUMAN	BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)	0		anterior/posterior axis specification (GO:0009948)|gastrulation with mouth forming second (GO:0001702)|histone H2A monoubiquitination (GO:0035518)|histone H2A-K119 monoubiquitination (GO:0036353)|mitotic cell cycle (GO:0000278)|negative regulation of transcription from RNA polymerase II promoter (GO:0000122)|transcription, DNA-templated (GO:0006351)	euchromatin (GO:0000791)|MLL1 complex (GO:0071339)|nuclear body (GO:0016604)|nucleoplasm (GO:0005654)|nucleus (GO:0005634)|PcG protein complex (GO:0031519)|PRC1 complex (GO:0035102)|sex chromatin (GO:0001739)|ubiquitin ligase complex (GO:0000151)	chromatin binding (GO:0003682)|ligase activity (GO:0016874)|RING-like zinc finger domain binding (GO:0071535)|ubiquitin-protein transferase activity (GO:0004842)|zinc ion binding (GO:0008270)	NS(1)|breast(4)|endometrium(3)|eye(42)|kidney(60)|large_intestine(3)|lung(9)|ovary(4)|pleura(39)|prostate(4)|skin(9)|urinary_tract(2)	180				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)	ACATGCAGCCTGGCCTCATACTTGATCCTGCGGTCGGGCACCACTGCCATCAGGTTGAAGCG	0.628	1									SO:0001651	inframe_deletion	AF045581	CCDS2853.1	3p21.31-p21.2	2014-09-17			ENSG00000163930	ENSG00000163930		950	protein-coding gene	gene with protein product		603089			9528852	Standard	NM_004656	Approved	hucep-6, KIAA0272, UCHL2	uc003ddx.4	Q92560	OTTHUMG00000158392	ENST00000460680.1:c.689_730delTGATGGCAGTGGTGCCCGACCGCAGGATCAAGTATGAGGCCA	3:g.52440322_52440363delTGGCCTCATACTTGATCCTGCGGTCGGGCACCACTGCCATCA	ENSP00000417132:p.Leu230_Ala243del	B2RBS7|B3KRH1|Q5TEN1|Q5TEN2	ENST00000460680.1		CCDS2853.1																																																																																			BAP1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000350895.1	1.980000e+01	2.555000e+01		-10	34						7		15	3.480000e-01
