Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SCNN1D	6339	hgsc.bcm.edu	37	1	1226692	1226692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCNN1D-90	NM_001130413	exon18	c.T2111C	p.V704A	CCTCCGTCCTCTC	.	40	38	4	0	.	3	0	3	0	0
ATAD3B	83858	hgsc.bcm.edu	37	1	1431081	1431081	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATAD3B-44	NM_031921	exon16	c.1831delT	p.C611fs	GGCCCCTGCACAT	.	88	18	32	0	.	0	0	0	0	0
CHD5	26038	bcgsc.ca;mdanderson.org	37	1	6194223	6194223	+	Missense_Mutation	SNP	G	G	A	rs200489902		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CHD5-719	NM_015557	exon20	c.C3109T	p.R1037W	CATCCCGCAGTTT	.	41	34	39	1	G|0.999;A|0.000	0	0	0	0	0
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RPL22-650	NM_000983	exon2	c.44delA	p.K15fs	TGCTTCTTTTTTT	.	22	18	38	0	.	0	0	0	0	0
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	6534211	6534211	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLEKHG5-652	NM_001265592	exon8	c.T690C	p.P230P	ATCTCCAGGCTTG	.	58	43	52	0	.	5	0	5	0	0
PER3	8863	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	7887490	7887490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PER3-93	NM_016831	exon17	c.G2477T	p.G826V	TGCATGGGCTGCC	.	80	66	53	1	.	0	0	0	0	0
UBE4B	10277	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	10197164	10197164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UBE4B-229	NM_001105562	exon17	c.C2264T	p.T755M	TCCCTACGGAGTG	.	66	57	91	1	.	0	0	0	0	0
MASP2	10747	hgsc.bcm.edu	37	1	11105562	11105562	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MASP2-94	NM_139208	exon4	c.G447A	p.A149A	GGTGGGCGCCTCT	.	134	115	6	0	.	0	0	0	0	0
SPEN	23013	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	16254767	16254767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPEN-298	NM_015001	exon11	c.C2032T	p.R678W	GATCCTCGGGAAT	.	162	149	230	2	.	0	0	0	0	0
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	17982377	17982377	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARHGEF10L-292	NM_018125	exon24	c.2485delG	p.G829fs	CAGGTCGGGGGCG	.	94	83	76	0	.	0	0	0	0	0
MRTO4	51154	bcgsc.ca	37	1	19584004	19584004	+	Silent	SNP	G	G	A	rs1042380	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MRTO4-90	NM_016183	exon5	c.G330A	p.E110E	AAAGGAGGAGGTG	.	73	5	81	0	G|0.711;A|0.289	0	0	0	0	0
VWA5B1	127731	broad.mit.edu;bcgsc.ca	37	1	20639404	20639404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001039500	exon3	c.C215T	p.T72I	TCGTGACAGTACA	.	168	7	112	0	.	0	0	0	0	0
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21276548	21276548	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EIF4G3-91	NM_001198803	exon13	c.C636T	p.S212S	ATGAGCGCTCTCC	.	93	44	79	0	.	3	2	1	0	0
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24993380	24993380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SRRM1-93	NM_005839	exon13	c.G1703A	p.R568Q	CTCCTCGACGGCG	.	395	149	509	0	.	34	18	16	0	0
C1orf172	126695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27278436	27278436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C1orf172-154	NM_152365	exon2	c.C436T	p.R146W	CATCCCGCCGGCT	.	108	8	55	0	.	0	0	0	0	0
SLC9A1	6548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27429001	27429001	+	Silent	SNP	G	G	A	rs144261466		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC9A1-91	NM_003047	exon8	c.C1695T	p.G565G	GCGCTCGCCAGCT	.	63	59	58	0	G|1.000;A|0.000	5	1	4	0	0
ZSCAN20	7579	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33954759	33954759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZSCAN20-93	NM_145238	exon4	c.G649A	p.V217I	GGGAGCGTTGGAG	.	167	82	173	1	.	0	0	0	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370731	35370731	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DLGAP3-71	NM_001080418	exon1	c.254delG	p.G85fs	CTGCTACCCCCCC	.	15	8	13	0	.	0	0	0	0	0
CSF3R	1441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	36935323	36935323	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CSF3R-515	NM_156039	exon11	c.1404delC	p.P468fs	CGCGCTGGGGGGG	.	56	39	26	0	.	0	0	0	0	0
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39876656	39876656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_015038	exon1	c.T719C	p.V240A	AAGCTGTAGCAAC	.	100	77	147	0	.	0	0	0	0	0
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39880128	39880128	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_015038	exon1	c.C4191T	p.T1397T	TGCAACCGCTGGA	.	143	123	127	0	.	0	0	0	0	0
TMEM125	128218	hgsc.bcm.edu	37	1	43738798	43738798	+	Silent	SNP	C	C	T	rs139782659		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMEM125-153	NM_144626	exon4	c.C405T	p.A135A	GCTGGCCGCCGCC	.	31	27	1	0	C|1.000;T|0.000	0	0	0	0	0
ARTN	9048	hgsc.bcm.edu	37	1	44402375	44402375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARTN-90	NM_001136215	exon4	c.G625A	p.V209I	ATGGACGTCAACA	.	85	30	7	0	.	0	0	0	0	0
SLC5A9	200010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	48701436	48701436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC5A9-93	NM_001135181	exon11	c.G1252A	p.A418T	ATGGCCGCTCTCA	.	255	15	313	0	.	0	0	0	0	0
C8B	732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	57415368	57415368	+	Missense_Mutation	SNP	G	G	A	rs150146785	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C8B-92	NM_000066	exon6	c.C724T	p.R242C	CATTGCGTTCAAA	.	60	51	98	1	G|0.999;A|0.001	0	0	0	0	0
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62940939	62940939	+	Silent	SNP	G	G	A	rs202231787		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DOCK7-92	NM_001271999	exon46	c.C6012T	p.P2004P	GTCTGCGGGATCC	.	108	10	139	0	G|0.999;A|0.001	4	3	1	0	0
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109273459	109273459	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FNDC7-92	NM_001144937	exon9	c.C1788T	p.C596C	AGGATGCATCACA	.	134	8	178	0	.	0	0	0	0	0
MYBPHL	343263	ucsc.edu;bcgsc.ca	37	1	109839774	109839774	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYBPHL-92	NM_001010985	exon4	c.C468T	p.D156D	CCAAACGTCCACC	.	163	150	196	3	.	0	0	0	0	0
CSF1	1435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110467421	110467421	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CSF1-91	NM_000757	exon7	c.G1593A	p.A531A	GAGAGCGGATTCT	.	163	67	248	0	.	0	0	0	0	0
MOV10	4343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	113237220	113237220	+	Missense_Mutation	SNP	G	G	A	rs112768939		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MOV10-95	NM_020963	exon9	c.G1441A	p.V481I	CGGGACGTCCCGC	.	107	94	55	0	A|0.000;C|0.000;G|0.999	3	0	3	0	0
SYCP1	6847	hgsc.bcm.edu;broad.mit.edu	37	1	115537601	115537601	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYCP1-91	NM_003176	exon32	c.2892delA	p.R964fs	GGATAGAAAAAAA	.	63	11	70	0	.	0	0	0	0	0
GDAP2	54834	hgsc.bcm.edu;bcgsc.ca	37	1	118439565	118439568	+	Frame_Shift_Del	DEL	GAAA	GAAA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAAA	GAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GDAP2-92	NM_017686	exon8	c.840_843del	p.280_281del	GCCAATGAAAGAG	.	53	46	97	1	.	0	0	0	0	0
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADAMTSL4-92	NM_019032	exon14	c.2263delG	p.G755fs	GAATTTGGGGGGG	.	49	26	7	0	.	0	0	0	0	0
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150531111	150531111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADAMTSL4-92	NM_019032	exon15	c.G2545A	p.D849N	CACAGCGACTGGA	.	62	7	62	0	.	0	0	0	0	0
HRNR	388697	bcgsc.ca	37	1	152185882	152185882	+	Silent	SNP	G	G	A	rs77559827		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HRNR-93	NM_001009931	exon3	c.C8223T	p.G2741G	AGACTGGCCTGTG	.	23	6	114	1	A|1.000;|0.000	0	0	0	0	0
HRNR	388697	bcgsc.ca	37	1	152187474	152187474	+	Missense_Mutation	SNP	G	G	A	rs143987598	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HRNR-93	NM_001009931	exon3	c.C6631T	p.R2211C	GGCCACGGCTGGA	.	533	61	388	1	G|0.999;A|0.001	0	0	0	0	0
TPM3	7170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154141804	154141804	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TPM3-416	NM_152263	exon9	c.C831T	p.H277H	GAGGGCGTGGTCC	.	161	77	253	0	.	0	0	0	0	0
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156908212	156908212	+	Missense_Mutation	SNP	G	G	A	rs141649554		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARHGEF11-233	NM_198236	exon38	c.C4190T	p.T1397M	TTACCCGTAGCCT	.	125	110	166	0	G|1.000;A|0.000	0	0	0	0	0
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160100011	160100011	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP1A2-518	NM_000702	exon12	c.C1581T	p.L527L	CCCGCTCGACAAG	.	66	61	77	0	.	0	0	0	0	0
USP21	27005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161130593	161130593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	USP21-660	NM_001014443	exon3	c.C163T	p.R55W	CCTCCCCGGCCAG	.	63	57	58	0	.	6	0	6	0	0
DUSP27	92235	bcgsc.ca	37	1	167096395	167096395	+	Missense_Mutation	SNP	C	C	T	rs76205550	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DUSP27-71	NM_001080426	exon5	c.C2027T	p.T676M	ACACGACGTCAGT	.	238	8	189	1	C|0.984;T|0.016	0	0	0	0	0
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177245455	177245455	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM5B-28	NM_021165	exon6	c.C897T	p.C299C	CAAGTGCAGCCCC	.	396	175	427	0	.	0	0	0	0	0
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	180914481	180914481	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIAA1614-26	NM_020950	exon9	c.C3330T	p.D1110D	GGAGGACGTGGGT	.	48	43	8	0	.	0	0	0	0	0
ATP2B4	493	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203682343	203682343	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP2B4-517	NM_001001396	exon14	c.G2262A	p.A754A	CCTGGCGCGATCT	.	119	41	200	1	.	5	5	0	0	0
SRGAP2D	100996712	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	206566076	206566076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001271887	exon2	c.G58A	p.D20N	AATGCCGACAGCA	.	900	131	1069	0	.	10	9	1	0	0
RASSF5	83593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206757996	206757996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RASSF5-660	NM_182663	exon4	c.G968A	p.R323Q	TTAAGCGGATACA	.	142	124	207	0	.	2	0	2	0	0
CR2	1380	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207642044	207642044	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CR2-232	NM_001006658	exon3	c.618delC	p.V206fs	TGCTGTCCCCCCC	.	61	57	98	0	.	0	0	0	0	0
PLXNA2	5362	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208390432	208390432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLXNA2-92	NM_025179	exon2	c.G836A	p.R279H	ACGATGCGTGAGG	.	92	81	107	1	.	0	0	0	0	0
CAPN2	824	broad.mit.edu;bcgsc.ca	37	1	223947018	223947018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CAPN2-523	NM_001748	exon12	c.C1364T	p.T455M	TCCTGACGAATCG	.	188	7	261	0	.	11	11	0	0	0
RYR2	6262	broad.mit.edu;bcgsc.ca	37	1	237791320	237791320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RYR2-158	NM_001035	exon41	c.G6380A	p.R2127Q	AGATTCGGTCCCT	.	193	7	234	0	.	0	0	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	237811912	237811912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RYR2-158	NM_001035	exon49	c.C7511T	p.T2504M	TAGATACGGTGAG	.	68	4	92	0	.	0	0	0	0	0
AKR1C3	8644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	5139659	5139659	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AKR1C3-515	NM_001253908	exon3	c.C286T	p.R96X	TTGGTCCGACCAG	.	149	9	131	0	.	58	58	0	0	0
CALML3	810	bcgsc.ca	37	10	5567320	5567320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CALML3-90	NM_005185	exon1	c.G272A	p.R91H	CCTTCCGCGTGTT	.	248	171	35	2	.	0	0	0	0	0
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7768994	7768994	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ITIH2-93	NM_002216	exon10	c.C1066T	p.R356X	AACATTCGAACTT	.	88	53	108	0	.	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16994285	16994285	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CUBN-166	NM_001081	exon33	c.G4959A	p.A1653A	AGGTTGCGCTTGA	.	189	62	188	0	.	0	0	0	0	0
PTPLA	9200	hgsc.bcm.edu	37	10	17659149	17659149	+	Missense_Mutation	SNP	C	C	G	rs7895850	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PTPLA-226	NM_014241	exon1	c.G190C	p.E64Q	TCCGCTCGCCGGG	.	8	8	0	0	C|0.007;G|0.002;T|0.991	0	0	0	0	0
GPR158	57512	hgsc.bcm.edu	37	10	25465062	25465062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPR158-141	NM_020752	exon1	c.G713A	p.G238D	GCCGCGGCCCCAA	.	26	19	1	0	.	0	0	0	0	0
PARD3	56288	broad.mit.edu	37	10	34663856	34663856	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PARD3-92	NM_001184788	exon11	c.A1614T	p.G538G	CACAGTTCCTTCC	.	120	5	102	0	.	0	0	0	0	0
BMS1	9790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43285924	43285924	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BMS1-93	NM_014753	exon5	c.C601T	p.R201X	AAGAAGCGATTAA	.	76	7	64	0	.	7	7	0	0	0
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43622076	43622076	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RET-4507	NM_020630	exon19	c.C3093T	p.D1031D	TGACGACGGCCTC	.	90	26	65	0	.	6	3	3	0	0
PTPN20B	26095	hgsc.bcm.edu	37	10	46584455	46584455	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_015605	exon7	c.560delA	p.N187fs	TATCTGTTTTTTT	.	80	33	60	0	.	0	0	0	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	rs72780221	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	9	4	0	0	G|0.901;A|0.099	1	1	0	0	0
PPYR1	5540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	47087520	47087520	+	Missense_Mutation	SNP	G	G	A	rs115443559	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PPYR1-524	NM_005972	exon3	c.G737A	p.R246H	AGGGGCGCGTGTT	.	153	26	111	0	G|0.999;A|0.001	0	0	0	0	0
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	50533416	50533416	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C10orf71-90	NM_001135196	exon3	c.G2826A	p.S942S	GGGGTCGAGCATG	.	127	83	86	0	.	0	0	0	0	0
DRGX	644168	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50574313	50574313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	.	.	.	.	GCTCGCGGGCCTT	.	127	79	44	1	.	0	0	0	0	0
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55587306	55587306	+	Missense_Mutation	SNP	C	C	T	rs143538460		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDH15-193	NM_001142763	exon33	c.G4229A	p.R1410H	GCTTGACGTCTTG	.	105	29	101	0	C|1.000;T|0.000	2	2	0	0	0
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61012730	61012730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM13C-70	NM_198215	exon12	c.G1361A	p.R454H	TGTGGACGGTCTT	.	262	72	238	0	.	4	4	0	0	0
SUPV3L1	6832	broad.mit.edu	37	10	70967601	70967601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SUPV3L1-227	NM_003171	exon14	c.G1829A	p.R610Q	TACGCCGATACAT	.	201	4	179	0	.	43	43	0	0	0
H2AFY2	55506	broad.mit.edu	37	10	71871407	71871407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	H2AFY2-91	NM_018649	exon9	c.G1087A	p.V363M	ATCTACGTGCAGG	.	124	5	91	0	.	42	42	0	0	0
SPOCK2	9806	hgsc.bcm.edu	37	10	73848075	73848075	+	Silent	SNP	C	C	T	rs2306324		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPOCK2-90	NM_001134434	exon2	c.G12A	p.P4P	GCAGCCCGGGGCG	.	4	4	0	0	C|0.870;T|0.130	0	0	0	0	0
USP54	159195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75290071	75290071	+	Missense_Mutation	SNP	C	C	T	rs150999517		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	USP54-721	NM_152586	exon12	c.G1658A	p.R553H	CAGTCACGAGAGT	.	160	56	175	1	C|0.999;T|0.000	0	0	0	0	0
ZSWIM8	23053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75552240	75552240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001242488	exon10	c.C1943A	p.P648H	CCTGTCCTCTCCA	.	131	47	84	0	.	17	12	5	0	0
GHITM	27069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	85909926	85909926	+	Silent	SNP	G	G	A	rs201995209		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GHITM-90	NM_014394	exon7	c.G708A	p.A236A	GTGTGCGCCCAGT	.	169	37	136	1	G|0.999;A|0.001	58	46	12	0	0
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	89469057	89469057	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PAPSS2-493	NM_001015880	exon2	c.C132T	p.T44T	ATGTACCGTGTGG	.	33	12	44	0	.	1	1	0	0	0
LCOR	84458	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98708916	98708916	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LCOR-189	NM_001170766	exon6	c.G102A	p.P34P	CCTGCCGAAAGCA	.	82	52	81	1	.	0	0	0	0	0
RRP12	23223	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99129265	99129265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RRP12-92	NM_015179	exon25	c.G2872A	p.V958M	TGACCACGTCACG	.	192	74	155	1	.	6	5	1	0	0
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	99145706	99145706	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RRP12-92	NM_015179	exon9	c.C1062T	p.H354H	CCTGGCGTGGAAG	.	257	157	173	0	.	0	0	0	0	0
PDZD7	79955	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	102789754	102789754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDZD7-136	NM_001195263	exon2	c.G223A	p.E75K	TACCTTCGATGGG	.	30	6	23	0	.	0	0	0	0	0
SUFU	51684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104359294	104359294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SUFU-2246	NM_001178133	exon8	c.C1015T	p.R339W	CACGACCGGGCCC	.	114	35	88	0	.	0	0	0	0	0
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105182858	105182858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDCD11-275	NM_014976	exon18	c.G2611A	p.D871N	GTGCCCGACCTGG	.	294	188	215	0	.	2	0	2	0	0
PDCD11	22984	broad.mit.edu;bcgsc.ca	37	10	105185215	105185215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDCD11-275	NM_014976	exon20	c.A3238G	p.T1080A	CCTACTACCAAGC	.	205	16	196	1	.	1	1	0	0	0
CALHM1	255022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105215444	105215444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CALHM1-91	NM_001001412	exon2	c.C616T	p.R206W	AGGGCCGCACAGA	.	161	19	76	0	.	0	0	0	0	0
CALHM3	119395	broad.mit.edu;bcgsc.ca	37	10	105233389	105233389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CALHM3-67	NM_001129742	exon3	c.G616A	p.D206N	TCTGGTCGAAGCA	.	164	6	50	0	.	0	0	0	0	0
INPP5F	22876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121586489	121586489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INPP5F-229	NM_014937	exon20	c.A2596G	p.N866D	CTTACAAATTCTA	.	183	110	143	0	.	0	0	0	0	0
ADAM12	8038	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127755329	127755329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADAM12-716	NM_021641	exon13	c.C1379T	p.P460L	GCGTCCGGCTTCA	.	374	122	339	2	.	0	0	0	0	0
PWWP2B	170394	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	134219725	134219725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PWWP2B-90	NM_138499	exon2	c.C1721T	p.A574V	ATGCCGCAAGACA	.	159	103	121	2	.	60	16	44	0	0
RASSF7	8045	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	562158	562158	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RASSF7-91	NM_001143994	exon3	c.C204T	p.G68G	AGTGGGCGCCCAG	.	173	11	77	0	.	16	16	0	0	0
PHRF1	57661	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	598468	598468	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHRF1-22	NM_020901	exon9	c.G990A	p.T330T	CCTGACGCCGCGC	.	56	47	8	0	.	11	0	11	0	0
MUC2	4583	bcgsc.ca	37	11	1093410	1093410	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MUC2-90	NM_002457	exon30	c.C5229A	p.T1743T	CCCAACCACGACA	.	118	9	126	3	.	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266085	1266085	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002458	exon31	c.C7975G	p.P2659A	CACACCCCCACAG	.	537	80	492	17	.	0	0	0	0	0
MUC5B	727897	mdanderson.org	37	11	1266656	1266656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002458	exon31	c.G8546A	p.R2849H	AGACCCGCACCTC	.	114	53	24	1	.	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1267793	1267793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002458	exon31	c.C9683T	p.T3228I	GAAGCACAGCCAC	.	292	89	285	4	.	0	0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1269600	1269600	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002458	exon31	c.T11490C	p.T3830T	AGAGACTGCCCAC	.	238	14	325	0	.	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1270826	1270826	+	Missense_Mutation	SNP	T	T	C	rs4046507	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002458	exon31	c.T12716C	p.M4239T	CGGCCATGCCCTC	.	373	314	377	78	T|0.976;C|0.024	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1276467	1276467	+	Silent	SNP	A	A	G	rs56344012		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002458	exon36	c.A15861G	p.P5287P	CCCACCACAGCCG	.	24	18	6	0	A|0.981;G|0.019	0	0	0	0	0
OR51F2	119694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4843086	4843086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OR51F2-70	NM_001004753	exon1	c.G471T	p.K157N	TGCCAAGATTGGG	.	148	77	198	1	.	0	0	0	0	0
MICAL2	9645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	12234878	12234878	+	Silent	SNP	G	G	A	rs138615174		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MICAL2-92	NM_014632	exon7	c.G768A	p.A256A	CACAGCGGAAGCC	.	101	99	107	0	G|1.000;A|0.000	0	0	0	0	0
INSC	387755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	15262049	15262049	+	Missense_Mutation	SNP	G	G	A	rs201482506		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INSC-94	NM_001031853	exon12	c.G1591A	p.A531T	AGTGACGCCGTGC	.	112	51	117	0	G|0.999;A|0.000	0	0	0	0	0
KCNJ11	3767	bcgsc.ca	37	11	17408630	17408630	+	Missense_Mutation	SNP	C	C	T	rs5215	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KCNJ11-91	NM_000525	exon1	c.G1009A	p.V337I	CTTTGACGGTGTT	.	255	8	200	1	C|0.272;T|0.728	0	0	0	0	0
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18339355	18339355	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HPS5-133	NM_181507	exon2	c.G51A	p.E17E	TTCAAACTCTGCA	.	117	6	166	0	.	0	0	0	0	0
LDHA	3939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18422479	18422479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LDHA-650	NM_001165414	exon4	c.G427A	p.V143M	CGTAACGTGAACA	.	130	76	191	0	.	2	2	0	0	0
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	20075678	20075678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NAV2-96	NM_001244963	exon19	c.C4603T	p.R1535W	TGGTTACGGTCCC	.	86	74	96	0	.	1	0	1	0	0
LRRC4C	57689	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40136451	40136451	+	Silent	SNP	C	C	T	rs116285789	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRRC4C-521	NM_001258419	exon7	c.G1392A	p.P464P	CTGAGACGGTTCC	.	183	88	168	1	C|0.996;T|0.004	6	1	5	0	0
SLC35C1	55343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45832787	45832787	+	Silent	SNP	C	C	T	rs144046143		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC35C1-90	NM_018389	exon2	c.C996T	p.G332G	GCTGGGCGGCTCC	.	47	45	41	0	C|1.000;T|0.000	7	0	7	0	0
CRY2	1408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45892023	45892023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRY2-90	NM_021117	exon9	c.C1552T	p.R518W	ACCAGCCGGCTTA	.	127	20	169	0	.	5	5	0	0	0
ARHGAP1	392	broad.mit.edu	37	11	46703669	46703669	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARHGAP1-227	NM_004308	exon5	c.C381T	p.H127H	CAGGCCGTGGTGC	.	221	6	273	0	.	2	2	0	0	0
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46914637	46914637	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRP4-94	NM_002334	exon13	c.C1584T	p.T528T	TGAGTCGGTCCAG	.	66	33	78	0	.	0	0	0	0	0
PACSIN3	29763	hgsc.bcm.edu	37	11	47202120	47202120	+	Silent	SNP	G	G	A	rs2291445	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PACSIN3-68	NM_016223	exon5	c.C333T	p.R111R	CCAGGCGCGCACC	.	13	13	0	0	G|0.984;A|0.016	4	0	4	0	0
PTPRJ	5795	broad.mit.edu;bcgsc.ca	37	11	48161171	48161171	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PTPRJ-541	NM_002843	exon11	c.G2286A	p.A762A	CAATGCGACCCAC	.	134	6	164	0	.	0	0	0	0	0
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57466653	57466653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZDHHC5-226	NM_015457	exon11	c.G1745A	p.R582H	CCCCTCGTACTAG	.	57	53	57	0	.	8	0	8	0	0
GLYATL1	92292	broad.mit.edu;bcgsc.ca	37	11	58723211	58723211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GLYATL1-91	NM_080661	exon7	c.C713T	p.A238V	TGCCAGCAGCCTG	.	121	5	185	0	.	0	0	0	0	0
PRPF19	27339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	60666651	60666651	+	Silent	SNP	G	G	A	rs147483370	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRPF19-91	NM_014502	exon11	c.C954T	p.G318G	ATAGTCGCCAGTG	.	72	64	108	2	G|0.993;A|0.007	16	1	15	0	0
AHNAK	79026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62298815	62298815	+	Missense_Mutation	SNP	G	G	A	rs201304148	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AHNAK-109	NM_001620	exon5	c.C3074T	p.A1025V	ACATTCGCTTTGG	.	107	16	140	1	G|1.000;C|0.000	2	2	0	0	0
NXF1	10482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62561845	62561845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NXF1-228	NM_006362	exon19	c.G1645A	p.A549T	GCATAGCGAAGGC	.	132	64	189	0	.	67	34	33	0	0
SLC22A8	9376	bcgsc.ca	37	11	62782278	62782278	+	Silent	SNP	C	C	T	rs4149180	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC22A8-93	NM_001184732	exon2	c.G153A	p.P51P	GTGGGGCGGGCGA	.	85	6	88	0	C|0.824;T|0.176	0	0	0	0	0
C11orf84	144097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63594410	63594410	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C11orf84-90	NM_138471	exon6	c.G945A	p.P315P	CCCTCCGGGGCTC	.	58	25	30	0	.	1	1	0	0	0
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64368361	64368361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC22A12-91	NM_144585	exon9	c.G1549A	p.E517K	CTGCCCGAGACCC	.	35	12	20	0	.	0	0	0	0	0
MEN1	4221	hgsc.bcm.edu	37	11	64572093	64572093	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MEN1-3017	NM_130800	exon10	c.1561delC	p.R521fs	GCTTCCGGGGGGG	.	18	17	2	0	.	0	0	0	0	0
POLA2	23649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65034978	65034978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POLA2-227	NM_002689	exon3	c.C235T	p.H79Y	GCCAGGCATAGTA	.	58	48	100	0	.	1	1	0	0	0
PELI3	246330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66243098	66243098	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PELI3-91	NM_145065	exon8	c.C870T	p.D290D	GCAGGACGGCTCT	.	238	19	106	0	.	1	1	0	0	0
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71718457	71718457	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NUMA1-633	NM_006185	exon21	c.C5241T	p.D1747D	GGTGCCGTCTGGC	.	54	52	68	0	.	51	5	46	0	0
PHOX2A	401	hgsc.bcm.edu	37	11	71951242	71951242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHOX2A-90	NM_005169	exon3	c.G406A	p.V136I	ACCAGACCTGCGG	.	8	6	0	0	.	0	0	0	0	0
RPS3	6188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75115215	75115215	+	Missense_Mutation	SNP	G	G	A	rs11546214	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RPS3-90	NM_001260506	exon5	c.G550A	p.V184I	TACTACGTTGACA	.	179	159	175	0	.	925	70	855	0	0
MYO7A	4647	bcgsc.ca	37	11	76912590	76912590	+	Silent	SNP	C	C	T	rs80033599	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYO7A-138	NM_000260	exon36	c.C4950T	p.N1650N	GGCCAACGGCATC	.	233	9	228	0	C|0.986;T|0.014	0	0	0	0	0
INTS4	92105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	77614597	77614597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INTS4-92	NM_033547	exon17	c.G2086A	p.A696T	TCGCTGCTGCTGA	.	279	101	303	3	.	0	0	0	0	0
KCTD21	283219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77885166	77885166	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KCTD21-69	NM_001029859	exon2	c.C435T	p.N145N	GTTGGCGTTGAAG	.	81	68	131	0	.	0	0	0	0	0
CCDC83	220047	broad.mit.edu	37	11	85597253	85597253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC83-91	NM_173556	exon5	c.G354A	p.M118I	GCGCATGCAAATA	.	77	5	107	0	.	0	0	0	0	0
SLC36A4	120103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92881964	92881964	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC36A4-93	NM_152313	exon11	c.C1254T	p.F418F	TCCAACGAAGGAA	.	150	141	207	2	.	1	0	1	0	0
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	93826774	93826774	+	Missense_Mutation	SNP	G	G	A	rs200108606		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HEPHL1-71	NM_001098672	exon13	c.G2402A	p.R801Q	AAGCCCGACCACC	.	175	9	226	0	G|0.999;A|0.000	0	0	0	0	0
FUT4	2526	hgsc.bcm.edu	37	11	94278062	94278062	+	Missense_Mutation	SNP	A	A	G	rs2230273	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FUT4-91	NM_002033	exon1	c.A763G	p.I255V	TGGGGCATCCAGG	.	18	16	0	0	A|0.910;G|0.090	0	0	0	0	0
POU2AF1	5450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111229514	111229514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POU2AF1-658	NM_006235	exon2	c.C146T	p.A49V	CTCACCGCCGTAG	.	74	35	51	0	.	0	0	0	0	0
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113860305	113860305	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HTR3A-90	NM_213621	exon8	c.G1371T	p.L457L	GCTGCTGCAGGAG	.	49	5	27	0	.	0	0	0	0	0
NXPE4	54827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	114453402	114453402	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001077639	exon3	c.G438A	p.A146A	CATCAGCGCTGGG	.	237	115	298	0	.	0	0	0	0	0
TMPRSS4	56649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117984057	117984057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMPRSS4-90	NM_019894	exon9	c.G817A	p.V273M	CTGGCTGTGGCCA	.	174	10	233	0	.	0	0	0	0	0
CD3G	917	hgsc.bcm.edu	37	11	118220583	118220583	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CD3G-90	NM_000073	exon3	c.205delA	p.K69fs	GAAGATAAAAAAA	.	122	97	175	1	.	0	0	0	0	0
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118495742	118495742	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHLDB1-90	NM_001144758	exon5	c.C448T	p.R150X	GGGGGCCGAGCCC	.	58	24	82	0	.	1	1	0	0	0
DDX6	1656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118635947	118635947	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DDX6-659	NM_004397	exon6	c.C616T	p.R206X	CATCTCGTAAATT	.	91	36	126	0	.	2	1	1	0	0
CXCR5	643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118764716	118764716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CXCR5-721	NM_001716	exon2	c.G463A	p.V155I	CACGCCGTCCATG	.	125	62	58	0	.	0	0	0	0	0
POU2F3	25833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	120175859	120175859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POU2F3-92	NM_001244682	exon7	c.G571A	p.E191K	GACCTCGAGGAGC	.	111	6	117	0	.	0	0	0	0	0
GRAMD1B	57476	broad.mit.edu	37	11	123483504	123483504	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRAMD1B-69	NM_020716	exon14	c.1526delG	p.W509fs	AGCCCTGGGGGTT	.	118	10	133	0	.	0	0	0	0	0
VWA5A	4013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123993793	123993793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VWA5A-92	NM_014622	exon7	c.T887C	p.M296T	GCCCCATGAGTAG	.	36	34	39	0	.	2	0	2	0	0
OR8D2	283160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124189576	124189576	+	Missense_Mutation	SNP	G	G	A	rs151287996		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OR8D2-113	NM_001002918	exon1	c.C518T	p.T173M	CTGACCGTATGAG	.	74	62	113	0	G|1.000;A|0.000	0	0	0	0	0
PKNOX2	63876	broad.mit.edu	37	11	125255595	125255595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PKNOX2-93	NM_022062	exon6	c.G376A	p.D126N	TTCAGCGATGACC	.	144	4	171	1	.	0	0	0	0	0
WNT5B	81029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1742040	1742040	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNT5B-562	NM_032642	exon3	c.C297T	p.N99N	GGACAACGCATCT	.	154	34	86	0	.	0	0	0	0	0
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	1988971	1988971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA2D4-23	NM_172364	exon14	c.C1562T	p.T521M	CTCACCGTTTCGT	.	151	10	87	0	.	0	0	0	0	0
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2019113	2019113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA2D4-23	NM_172364	exon4	c.G445A	p.E149K	CCTCCTCGGCAGC	.	118	60	76	0	.	0	0	0	0	0
TSPAN9	10867	bcgsc.ca	37	12	3390495	3390495	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TSPAN9-91	NM_006675	exon7	c.G564A	p.T188T	GAGAACGGTGAGG	.	129	6	41	0	.	0	0	0	0	0
ANO2	57101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	5724430	5724430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANO2-139	NM_020373	exon18	c.G1850A	p.R617H	ATCAGGCGCTCTT	.	187	34	148	1	.	0	0	0	0	0
GPR162	27239	hgsc.bcm.edu;broad.mit.edu	37	12	6934685	6934685	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPR162-92	NM_019858	exon3	c.904delC	p.P302fs	TCGGCGCCCCCCT	.	103	25	24	0	.	0	0	0	0	0
C1R	715	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7187965	7187965	+	Silent	SNP	C	C	T	rs147540938	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	.	.	.	.	AGTGTTCGGGTCC	.	203	52	157	0	C|0.999;T|0.001	979	701	278	0	0
CLEC4A	50856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	8290774	8290774	+	Missense_Mutation	SNP	G	G	A	rs200191238		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CLEC4A-90	NM_016184	exon6	c.G605A	p.R202H	ATGAGCGCTGCGT	.	338	21	266	0	G|0.999;A|0.000	3	3	0	0	0
DDX11	1663	broad.mit.edu;bcgsc.ca	37	12	31254784	31254784	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DDX11-229	NM_030653	exon21	c.C2070T	p.R690R	GGGTCGCATTCTC	.	269	10	150	0	.	12	12	0	0	0
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	40422282	40422282	+	Missense_Mutation	SNP	G	G	A	rs200980396	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC2A13-515	NM_052885	exon3	c.C746T	p.A249V	ATAACCGCCGGAA	.	42	26	27	0	.	0	0	0	0	0
VDR	7421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48249477	48249477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VDR-188	NM_001017536	exon7	c.G841A	p.A281T	GGTCAGCCAGGTG	.	454	223	299	0	.	0	0	0	0	0
OR8S1	341568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48921823	48921823	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OR8S1-69	NM_001005203	exon2	c.G1017A	p.T339T	GGTCACGCCTCAA	.	60	31	20	0	.	0	0	0	0	0
WNT1	7471	hgsc.bcm.edu	37	12	49374348	49374348	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNT1-1083	NM_005430	exon3	c.500delG	p.W167fs	GGCACTGGGGGGG	.	110	33	4	0	.	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49434492	49434492	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MLL2-612	NM_003482	exon31	c.7061delC	p.P2354fs	TGGGCAGGGGGTG	.	109	52	47	0	.	0	0	0	0	0
KCNH3	23416	hgsc.bcm.edu	37	12	49943990	49943990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KCNH3-90	NM_012284	exon10	c.G1796A	p.R599Q	CCCTGCGGCCCGC	.	68	21	6	0	.	9	9	0	0	0
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54757424	54757424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPR84-523	NM_020370	exon2	c.C212T	p.T71M	AGGAGCGTGCAGT	.	527	258	307	0	.	0	0	0	0	0
PA2G4	5036	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56504465	56504465	+	Silent	SNP	G	G	A	rs145895424		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PA2G4-68	NM_006191	exon9	c.G831A	p.P277P	CATGCCGTTTACT	.	162	79	120	1	G|1.000;A|0.000	2	2	0	0	0
MYO1A	4640	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57432600	57432600	+	Missense_Mutation	SNP	G	G	A	rs141039063		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYO1A-231	NM_005379	exon16	c.C1526T	p.A509V	TTGCCCGCATAGT	.	289	65	170	2	G|1.000;A|0.000	0	0	0	0	0
SHMT2	6472	ucsc.edu;bcgsc.ca	37	12	57624758	57624758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SHMT2-91	NM_005412	exon2	c.G206A	p.R69H	AGTGTCGTGGCCT	.	565	277	397	4	.	3	3	0	0	0
TMBIM4	51643	hgsc.bcm.edu	37	12	66531937	66531937	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMBIM4-515	NM_016056	exon7	c.520delT	p.Y174fs	CACTATAAAAAAA	.	30	12	25	0	.	0	0	0	0	0
KCNC2	3747	ucsc.edu;bcgsc.ca	37	12	75444415	75444415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KCNC2-224	NM_139137	exon3	c.G1370A	p.C457Y	AGAGCACACAGGG	.	150	58	110	2	.	0	0	0	0	0
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	83290288	83290288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMTC2-92	NM_152588	exon3	c.G1346A	p.R449Q	AAAAGCGGTTCCT	.	96	42	83	0	.	1	1	0	0	0
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85554403	85554403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRRIQ1-95	NM_001079910	exon24	c.G4733A	p.R1578H	CTGTGCGTCTAGC	.	108	42	92	0	.	0	0	0	0	0
SCYL2	55681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	100732792	100732792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCYL2-336	NM_017988	exon18	c.G2632T	p.G878C	ACTATGGGCAGTT	.	266	22	172	0	.	40	36	4	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BTBD11-93	NM_001018072	exon1	c.G794C	p.G265A	GCCCTGGGTCAGG	.	7	7	0	0	G|0.588;C|0.412	0	0	0	0	0
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109613959	109613959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACACB-98	NM_001093	exon8	c.C1328T	p.A443V	CCCAGGCAGCAGA	.	276	44	205	0	.	0	0	0	0	0
OAS2	4939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113442751	113442751	+	Missense_Mutation	SNP	G	G	A	rs143746502		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OAS2-91	NM_002535	exon7	c.G1192A	p.A398T	TCAACCGCCAAAG	.	130	66	86	0	G|0.999;A|0.000	0	0	0	0	0
OAS2	4939	broad.mit.edu;bcgsc.ca	37	12	113442852	113442852	+	Silent	SNP	C	C	T	rs186647423	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OAS2-91	NM_002535	exon7	c.C1293T	p.I431I	CAAAATCGTCAAG	.	257	12	177	1	C|0.999;A|0.000	0	0	0	0	0
MAP1LC3B2	643246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117013775	117013775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAP1LC3B2-68	NM_001085481	exon2	c.C28T	p.R10W	AAGCAGCGGCGCA	.	247	52	153	0	.	1	0	1	0	0
C12orf49	79794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117160928	117160928	+	Missense_Mutation	SNP	G	G	A	rs149801903		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C12orf49-91	NM_024738	exon2	c.C212T	p.P71L	TTGCTCGGACGAC	.	366	85	191	0	G|1.000;A|0.000	0	0	0	0	0
CAMKK2	10645	hgsc.bcm.edu	37	12	121711941	121711941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CAMKK2-450	NM_153500	exon2	c.C389A	p.P130H	CTGACGGGTGAGT	.	198	80	1	0	.	1	0	1	0	0
RHOF	54509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	122219074	122219074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RHOF-660	NM_019034	exon3	c.G251A	p.R84Q	AGGGGCCGCAGCC	.	247	52	109	0	.	27	25	2	0	0
SETD1B	23067	broad.mit.edu	37	12	122252825	122252825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SETD1B-86	NM_015048	exon6	c.C2704T	p.R902W	AAGGAGCGGATGG	.	195	18	78	1	.	0	0	0	0	0
SNRNP35	11066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123950559	123950559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SNRNP35-68	NM_180699	exon2	c.C487T	p.R163W	GGGGGACGGGACC	.	55	7	35	0	.	50	43	7	0	0
DNAH10	196385	broad.mit.edu	37	12	124417938	124417938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAH10-95	NM_207437	exon76	c.C13003T	p.L4335F	TCCTACCTCACGG	.	225	5	83	0	.	0	0	0	0	0
NCOR2	9612	hgsc.bcm.edu	37	12	124829305	124829305	+	Missense_Mutation	SNP	A	A	T	rs75902515		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NCOR2-229	NM_006312	exon34	c.T4552A	p.S1518T	CCCCCGAGCTGCT	.	19	7	0	0	.	20	8	12	0	0
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130184571	130184571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMEM132D-106	NM_133448	exon2	c.G752T	p.R251L	CCTGTCCGGATCC	.	134	59	88	0	.	0	0	0	0	0
EP400	57634	bcgsc.ca	37	12	132547096	132547096	+	Silent	SNP	G	G	A	rs74479394		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EP400-520	NM_015409	exon47	c.G8184A	p.Q2728Q	ACAACAGCAGCAG	.	287	49	113	1	.	20	17	3	0	0
POLE	5426	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133249853	133249853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POLE-233	NM_006231	exon14	c.C1370T	p.T457M	GAATACGTGGCCA	.	278	66	217	1	.	0	0	0	0	0
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24825999	24825999	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPATA13-229	NM_001166271	exon4	c.C2163T	p.N721N	ATCCAACGGTGAG	.	63	52	65	0	.	0	0	0	0	0
TSC22D1	8848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	45147753	45147753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TSC22D1-90	NM_183422	exon1	c.G2458A	p.A820T	TAACTGCAGGCAA	.	103	9	131	0	.	4	4	0	0	0
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95840746	95840746	+	Silent	SNP	G	G	A	rs150945397		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ABCC4-515	NM_005845	exon10	c.C1314T	p.G438G	CAATTCGCCAGGT	.	106	94	138	0	G|1.000;A|0.000	0	0	0	0	0
ING1	3621	bcgsc.ca	37	13	111371922	111371922	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ING1-515	NM_005537	exon2	c.C912T	p.N304N	TGAGAACGCGTCC	.	282	255	82	2	.	16	1	15	0	0
ARHGEF7	8874	broad.mit.edu	37	13	111938538	111938538	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARHGEF7-232	NM_001113511	exon18	c.G2058A	p.K686K	GCCCAAGCGCAAA	.	259	8	146	0	.	19	19	0	0	0
MCF2L	23263	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113741680	113741680	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MCF2L-228	NM_001112732	exon22	c.C2505T	p.H835H	CCTGCACGAGAAG	.	344	62	114	1	.	1	1	0	0	0
TFDP1	7027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114292172	114292172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TFDP1-416	NM_007111	exon11	c.C1046T	p.T349M	TCACGACGGCAGG	.	363	44	144	0	.	24	20	4	0	0
GRK1	6011	broad.mit.edu	37	13	114325865	114325865	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRK1-614	NM_002929	exon3	c.C879T	p.R293R	GCCGCGCGCCCTC	.	202	6	58	0	.	0	0	0	0	0
MMP14	4323	hgsc.bcm.edu	37	14	23315160	23315160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MMP14-226	NM_004995	exon10	c.C1661T	p.A554V	TGCTGGCGGTGGG	.	34	15	0	0	.	16	10	6	0	0
MMP14	4323	broad.mit.edu	37	14	23315199	23315199	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MMP14-226	NM_004995	exon10	c.1700delC	p.T567fs	ATGGGACCCCCAG	.	50	7	9	0	.	0	0	0	0	0
EFS	10278	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	23828979	23828979	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EFS-153	NM_005864	exon4	c.C708T	p.P236P	TTCCTCGGGTGCT	.	83	13	70	0	.	0	0	0	0	0
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	33014537	33014537	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AKAP6-733	NM_004274	exon4	c.A678G	p.E226E	ATTCGAACTGTCT	.	420	188	288	1	.	0	0	0	0	0
BAZ1A	11177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35231352	35231352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BAZ1A-291	NM_013448	exon24	c.G3854A	p.R1285H	TGGCCACGACTTG	.	128	26	89	0	.	11	9	2	0	0
MIS18BP1	55320	hgsc.bcm.edu	37	14	45716019	45716019	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MIS18BP1-90	NM_018353	exon2	c.471delA	p.K157fs	CTGCAATTTTTTT	.	130	20	76	1	.	0	0	0	0	0
NIN	51199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	51237214	51237215	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NIN-229	NM_020921	exon12	c.1325_1326del	p.442_442del	GATCTGCTCTCTC	.	127	59	89	0	.	0	0	0	0	0
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64644168	64644168	+	Silent	SNP	C	C	T	rs202141038		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYNE2-164	NM_182914	exon96	c.C17523T	p.H5841H	GCTTCACGAGGAC	.	247	116	187	0	C|0.999;T|0.000	3	2	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64680991	64680991	+	Missense_Mutation	SNP	G	G	A	rs150629598	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYNE2-164	NM_182914	exon106	c.G19136A	p.R6379H	CTTGGCGTAAACG	.	213	7	128	0	G|1.000;A|0.000	3	3	0	0	0
ACTN1	87	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69371417	69371417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACTN1-514	NM_001102	exon7	c.G631A	p.V211M	CTGCCACGTCAAA	.	245	27	144	0	.	2	1	1	0	0
GALNT16	57452	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	69792727	69792727	+	Missense_Mutation	SNP	G	G	A	rs138742665	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001168368	exon5	c.G551A	p.R184H	GCCTGCGCAATGA	.	264	14	149	0	G|1.000;A|0.000	2	2	0	0	0
PCNX	22990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	71575457	71575457	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCNX-91	NM_014982	exon34	c.G6438A	p.V2146V	GTTTGTGCCTTGT	.	283	60	173	0	.	18	17	1	0	0
ACOT2	10965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74040291	74040291	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACOT2-91	NM_006821	exon2	c.C843T	p.P281P	TCATCCCGAGGTT	.	294	49	185	0	.	0	0	0	0	0
SAMD15	161394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77845328	77845328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SAMD15-90	NM_001010860	exon1	c.C1567T	p.R523W	AAGGAACGGGTCT	.	303	64	250	0	.	1	1	0	0	0
ZC3H14	79882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	89069362	89069362	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZC3H14-93	NM_001160104	exon12	c.C1705T	p.L569L	CACTTGCTGAGCA	.	151	62	113	0	.	13	7	6	0	0
PSMC1	5700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	90730133	90730137	+	Frame_Shift_Del	DEL	TTTCA	TTTCA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	TTTCA	TTTCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PSMC1-90	NM_002802	exon5	c.407_411del	p.136_137del	GCATTCTTTCATT	.	285	62	194	0	.	0	0	0	0	0
PPP4R4	57718	broad.mit.edu;ucsc.edu	37	14	94741742	94741742	+	Silent	SNP	C	C	T	rs114442446	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PPP4R4-94	NM_058237	exon24	c.C2481T	p.S827S	CAGTAGCGTTCCA	.	209	32	132	2	C|0.999;A|0.001	0	0	0	0	0
SYNE3	161176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95884311	95884311	+	Missense_Mutation	SNP	G	G	A	rs142276866	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_152592	exon17	c.C2780T	p.A927V	GGGAGCGCCACAC	.	182	81	41	0	G|1.000;A|0.000	0	0	0	0	0
DEGS2	123099	hgsc.bcm.edu	37	14	100615855	100615855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DEGS2-90	NM_206918	exon2	c.C275T	p.S92L	TTGTGCGAGATGT	.	39	4	0	0	.	0	0	0	0	0
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102793112	102793112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF839-91	NM_018335	exon2	c.C1079T	p.T360M	GGTGCACGGAGGA	.	145	68	62	0	.	3	1	2	0	0
PPP1R13B	23368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104205313	104205313	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PPP1R13B-227	NM_015316	exon13	c.C2640T	p.H880H	CAGCCCGTGCCCC	.	160	82	103	0	.	21	6	15	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104642489	104642489	+	Missense_Mutation	SNP	G	G	T	rs117573425	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIF26A-24	NM_015656	exon12	c.G3364T	p.A1122S	TGCACTGCCGACA	.	22	17	0	0	G|0.982;T|0.018	9	5	4	0	0
CASC5	57082	bcgsc.ca	37	15	40914772	40914772	+	Silent	SNP	C	C	T	rs11855334	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CASC5-660	NM_170589	exon11	c.C2388T	p.V796V	CACTGTCGTCATT	.	199	7	272	4	C|0.632;T|0.368	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	63433897	63433897	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LACTB-90	NM_032857	exon6	c.1537delC	p.P513fs	AAGGTTCCCCCAA	.	76	32	93	0	.	0	0	0	0	0
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78466041	78466041	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACSBG1-91	NM_015162	exon13	c.C1983T	p.I661I	CTCTTCGATGGCC	.	78	35	105	0	.	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051801	79051801	+	Missense_Mutation	SNP	C	C	A	rs201472223		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADAMTS7-226	NM_014272	exon24	c.G5023T	p.A1675S	AGGGGGCGCCGTG	.	8	5	0	0	.	21	21	0	0	0
AP3B2	8120	bcgsc.ca	37	15	83328678	83328678	+	Missense_Mutation	SNP	C	C	T	rs200505090		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AP3B2-94	NM_004644	exon25	c.G3017A	p.R1006Q	TCACTCCGACAGG	.	131	38	149	2	.	2	2	0	0	0
BNC1	646	broad.mit.edu	37	15	83932513	83932513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BNC1-93	NM_001717	exon4	c.C1490T	p.T497M	GCAGGCGTGGCTG	.	219	6	282	0	.	0	0	0	0	0
ACAN	176	bcgsc.ca	37	15	89398631	89398631	+	Missense_Mutation	SNP	T	T	A	rs938609	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACAN-25	NM_001135	exon12	c.T2815A	p.S939T	CTGCCCTCTGGAG	.	80	4	110	0	T|0.540;A|0.460	0	0	0	0	0
POLG	5428	bcgsc.ca	37	15	89868870	89868870	+	Missense_Mutation	SNP	G	G	A	rs113994096	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POLG-228	NM_002693	exon10	c.C1760T	p.P587L	GGGCCCGGGGTCC	.	82	5	68	0	G|0.998;A|0.002	5	5	0	0	0
CRTC3	64784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	91184391	91184391	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRTC3-393	NM_022769	exon14	c.G1611A	p.P537P	AAGCCCGTATTCC	.	110	45	130	0	.	7	4	3	0	0
SSTR5	6755	hgsc.bcm.edu	37	16	1129594	1129594	+	Silent	SNP	G	G	A	rs201314089		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SSTR5-522	NM_001172560	exon2	c.G726A	p.S242S	GCGCTCGGAGCGG	.	55	14	7	0	G|0.999;A|0.001	0	0	0	0	0
BAIAP3	8938	broad.mit.edu;bcgsc.ca	37	16	1393394	1393394	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BAIAP3-91	NM_003933	exon15	c.G1371A	p.L457L	CCACAGGCACTGG	.	264	132	60	1	.	0	0	0	0	0
IGFALS	3483	hgsc.bcm.edu	37	16	1841949	1841949	+	Missense_Mutation	SNP	C	C	T	rs199977317		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IGFALS-90	NM_001146006	exon2	c.G584A	p.R195H	CTCAGACGGTTGT	.	109	74	6	0	C|0.999;T|0.000	0	0	0	0	0
TBL3	10607	hgsc.bcm.edu	37	16	2025627	2025627	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TBL3-90	NM_006453	exon10	c.A903G	p.A301A	CCTGGCACACACC	.	37	20	0	0	.	8	5	3	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	4	4	0	0	T|0.007;C|0.993	2	0	2	0	0
PRSS27	83886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2763556	2763556	+	Missense_Mutation	SNP	C	C	T	rs149957191	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRSS27-91	NM_031948	exon5	c.G652A	p.E218K	CCTCCTCGAAGCC	.	358	134	211	1	C|0.999;T|0.001	4	4	0	0	0
HMOX2	3163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4558130	4558130	+	Silent	SNP	C	C	T	rs186971432		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HMOX2-90	NM_001127205	exon4	c.C621T	p.N207N	GATGAACGCCCTG	.	724	294	497	2	C|0.999;T|0.000	64	36	28	0	0
RRN3	54700	broad.mit.edu	37	16	15188060	15188060	+	Missense_Mutation	SNP	G	G	A	rs201504364		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RRN3-91	NM_018427	exon1	c.C31T	p.P11S	CTCCCGGCAAACG	.	303	13	87	0	G|0.997;A|0.003	4	4	0	0	0
RRN3	54700	broad.mit.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RRN3-91	NM_018427	exon1	c.C25T	p.R9C	GCAAACGCGTGTG	.	285	14	75	0	G|0.997;A|0.003	2	2	0	0	0
SMG1	23049	broad.mit.edu	37	16	18887699	18887699	+	Missense_Mutation	SNP	T	T	C	rs1136817	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SMG1-1160	NM_015092	exon13	c.A1637G	p.H546R	ACAGCATGGGCTA	.	96	10	76	1	T|0.640;C|0.360	15	12	3	0	0
SYT17	51760	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19194969	19194969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYT17-69	NM_016524	exon5	c.G451A	p.D151N	AACCCCGACGACT	.	299	144	146	2	.	6	0	6	0	0
ARHGAP17	55114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24950845	24950845	+	Missense_Mutation	SNP	C	C	T	rs145791095	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARHGAP17-227	NM_001006634	exon17	c.G1564A	p.A522T	GGAAAGCGGGGGA	.	110	53	51	0	C|0.997;T|0.003	4	3	1	0	0
LCMT1	51451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	25151548	25151548	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LCMT1-22	NM_016309	exon4	c.G384A	p.T128T	TGTCACGAGAAAG	.	142	62	130	0	.	16	11	5	0	0
KIAA0556	23247	broad.mit.edu;bcgsc.ca	37	16	27782957	27782957	+	Silent	SNP	G	G	A	rs202124589		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIAA0556-141	NM_015202	exon22	c.G4182A	p.P1394P	GGCACCGCTGATG	.	156	31	102	1	G|0.999;A|0.000	0	0	0	0	0
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu	37	16	28847350	28847350	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATXN2L-92	NM_148414	exon22	c.2992delG	p.G998fs	AGTCATGGGGGGC	.	35	12	7	0	.	0	0	0	0	0
TAOK2	9344	broad.mit.edu;bcgsc.ca	37	16	29994575	29994575	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TAOK2-521	NM_004783	exon12	c.T1182C	p.P394P	AGGCCCTGAAGCC	.	71	6	39	0	.	11	11	0	0	0
INO80E	283899	hgsc.bcm.edu	37	16	30016621	30016621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INO80E-91	NM_173618	exon7	c.C593T	p.T198I	TCGGGACAACCCT	.	28	14	0	0	.	22	13	9	0	0
PRSS8	5652	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31144689	31144689	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002773	exon3	c.124delC	p.Q42fs	GTGCTTGGGGGGC	.	240	130	59	0	.	0	0	0	0	0
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48155704	48155704	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ABCC12-93	NM_033226	exon11	c.C1635T	p.Y545Y	TGAAACGTAGGCC	.	176	93	132	0	.	0	0	0	0	0
LONP2	83752	hgsc.bcm.edu	37	16	48278491	48278491	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LONP2-90	NM_031490	exon1	c.T192C	p.P64P	CACGCCTGACCCC	.	35	11	2	0	.	2	2	0	0	0
SNX20	124460	hgsc.bcm.edu	37	16	50707433	50707433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SNX20-23	NM_182854	exon4	c.G835A	p.A279T	CCAGCGCGTAGGC	.	94	60	6	0	.	0	0	0	0	0
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50744753	50744753	+	Missense_Mutation	SNP	C	C	T	rs104895427		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NOD2-231	NM_022162	exon4	c.C931T	p.R311W	CTGCAGCGGCTGC	.	104	54	46	0	C|0.999;T|0.001	0	0	0	0	0
RANBP10	57610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67765468	67765468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RANBP10-227	NM_020850	exon7	c.G796A	p.V266M	GATGCACGAGGTA	.	275	29	136	0	.	2	2	0	0	0
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70190402	70190402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDPR-135	NM_017990	exon19	c.G2260A	p.A754T	CGCGACGCCCTCC	.	230	30	128	0	.	0	0	0	0	0
VAC14	55697	broad.mit.edu;bcgsc.ca	37	16	70732653	70732653	+	Missense_Mutation	SNP	G	G	A	rs145938865	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VAC14-227	NM_018052	exon15	c.C1723T	p.R575W	CCTCCCGCAGCAG	.	287	10	153	1	G|0.999;A|0.001	19	19	0	0	0
DHODH	1723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72057466	72057466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DHODH-227	NM_001361	exon8	c.C1067T	p.T356M	TGTACACGGCCCT	.	62	24	37	0	.	12	6	6	0	0
CTRB2	440387	broad.mit.edu;bcgsc.ca	37	16	75238144	75238144	+	Missense_Mutation	SNP	C	C	T	rs201069805		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CTRB2-68	NM_001025200	exon7	c.G707A	p.R236H	CAGGTGCGGCTGC	.	248	127	46	1	.	0	0	0	0	0
TMEM231	79583	broad.mit.edu;bcgsc.ca	37	16	75575345	75575345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001077416	exon5	c.G832A	p.V278I	TCAGGACGGTGGT	.	136	52	108	1	.	1	1	0	0	0
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84129260	84129260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MBTPS1-92	NM_003791	exon4	c.G572A	p.R191H	ACCTGGCGCGGGA	.	131	22	77	0	.	1	1	0	0	0
ZNF469	84627	broad.mit.edu;bcgsc.ca	37	16	88496389	88496389	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001127464	exon1	c.C2511T	p.D837D	GGATGACGCCAAG	.	545	25	145	0	.	0	0	0	0	0
IL17C	27189	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	88706308	88706308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IL17C-90	NM_013278	exon3	c.G422A	p.R141H	CGGGCCGCGAGAC	.	47	25	9	0	.	1	0	1	0	0
ACSF3	197322	ucsc.edu	37	16	89167094	89167094	+	Missense_Mutation	SNP	T	T	C	rs7188200	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACSF3-68	NM_174917	exon3	c.T5C	p.L2P	CAATGCTGCCCCA	.	46	14	10	0	T|0.381;C|0.619	1	1	0	0	0
ANKRD11	29123	broad.mit.edu	37	16	89345709	89345709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANKRD11-139	NM_001256183	exon9	c.C7241T	p.T2414M	GCCAGCGTCTGCT	.	301	153	58	2	.	34	16	18	0	0
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89352532	89352532	+	Silent	SNP	C	C	T	rs149525788	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANKRD11-139	NM_001256183	exon8	c.G807A	p.T269T	CAGCGGCGTCTCG	.	158	41	104	0	C|1.000;G|0.000	16	8	8	0	0
MC1R	4157	hgsc.bcm.edu	37	16	89986317	89986317	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002386	exon1	c.C651T	p.H217H	CCAGCACGCCCAG	.	67	36	4	0	.	90	48	42	0	0
RPH3AL	9501	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	169309	169309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RPH3AL-91	NM_001190413	exon4	c.C253T	p.R85W	CATTCCGCCTCAT	.	79	65	86	1	.	0	0	0	0	0
MYO1C	4641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1371412	1371412	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYO1C-90	NM_001080779	exon28	c.G2766A	p.A922A	AGGCACCGCATAC	.	88	43	60	0	.	0	0	0	0	0
GSG2	83903	hgsc.bcm.edu	37	17	3627663	3627663	+	Missense_Mutation	SNP	G	G	A	rs55991903		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GSG2-297	NM_031965	exon1	c.G434A	p.R145H	CCGGCCGCCTCAG	.	18	18	0	0	G|0.993;A|0.007	1	0	1	0	0
VMO1	284013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4688850	4688850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VMO1-69	NM_182566	exon3	c.C416T	p.A139V	TTGTTCGCTGCTG	.	106	47	43	0	.	2	2	0	0	0
ASGR1	432	hgsc.bcm.edu	37	17	7077106	7077106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ASGR1-153	NM_001671	exon9	c.G748A	p.G250R	CTCCTCCGAGCCC	.	41	37	3	0	.	1	0	1	0	0
SPEM1	374768	broad.mit.edu;bcgsc.ca	37	17	7324353	7324353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPEM1-90	NM_199339	exon3	c.G359A	p.R120H	CCACACGCTGTGC	.	151	7	136	0	.	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343	bycluster	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TP53-70225	NM_000546	exon8	c.C817T	p.R273C	AAACACGCACCTC	.	79	74	119	0	.	2	0	2	0	0
ALOX12B	242	hgsc.bcm.edu;bcgsc.ca	37	17	7982767	7982767	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ALOX12B-226	NM_001139	exon8	c.1018delC	p.L340fs	GGCAGAGGGGGGC	.	227	196	47	1	.	0	0	0	0	0
MYH10	4628	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8424545	8424545	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYH10-92	NM_001256012	exon18	c.C2016T	p.S672S	ATATGCGGAGCCA	.	155	75	201	2	.	0	0	0	0	0
ADPRM	56985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10614312	10614312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_020233	exon4	c.G880A	p.V294I	TACCACGTCAACC	.	132	18	171	0	.	3	3	0	0	0
DNAH9	1770	bcgsc.ca	37	17	11532835	11532835	+	Silent	SNP	A	A	G	rs9895535	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAH9-168	NM_001372	exon7	c.A1452G	p.E484E	GCATGAAGAATTT	.	98	6	76	0	A|0.589;G|0.411	0	0	0	0	0
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	11778483	11778483	+	Missense_Mutation	SNP	C	C	T	rs145738103	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAH9-168	NM_001372	exon53	c.C10460T	p.T3487M	GGGTCACGCAGAT	.	77	5	95	0	C|0.999;T|0.001	0	0	0	0	0
DNAH9	1770	broad.mit.edu	37	17	11845741	11845741	+	Missense_Mutation	SNP	G	G	A	rs149812805	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAH9-168	NM_001372	exon67	c.G12782A	p.R4261Q	GTGGCCGGATGAA	.	114	4	158	1	G|1.000;A|0.000	0	0	0	0	0
CCDC144C	348254	broad.mit.edu;bcgsc.ca	37	17	20224697	20224697	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	.	.	.	.	ACGCCACGAGGAA	.	128	11	118	1	.	0	0	0	0	0
LGALS9B	284194	broad.mit.edu	37	17	20363687	20363687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LGALS9B-23	NM_001042685	exon2	c.G109A	p.V37I	TGAGAACGGCCCC	.	795	15	677	0	.	0	0	0	0	0
KCNJ18	100134444	ucsc.edu	37	17	21319943	21319943	+	Missense_Mutation	SNP	A	A	G	rs5021699	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001194958	exon3	c.A1289G	p.E430G	GACGGGAGTCAGA	.	58	19	16	0	A|0.600;G|0.400	0	0	0	0	0
MIR144	406936	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27188561	27188561	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	.	.	.	.	GTGCCCGGACTAG	.	104	36	106	0	.	0	0	0	0	0
LHX1	3975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35298051	35298051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LHX1-92	NM_005568	exon3	c.G542A	p.R181Q	AGCGGCGGGGACC	.	194	172	79	0	.	0	0	0	0	0
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37934013	37934013	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IKZF3-971	NM_012481	exon7	c.G717T	p.A239A	TGCCTCCGCACTT	.	105	42	95	0	.	0	0	0	0	0
RAPGEFL1	51195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38345578	38345578	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RAPGEFL1-229	NM_016339	exon6	c.C447T	p.P149P	GGAGCCCGCGGGG	.	58	39	110	0	.	3	1	2	0	0
SMARCE1	6605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38786977	38786977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SMARCE1-227	NM_003079	exon10	c.C1016T	p.P339L	TCCATCGGAATGT	.	71	63	121	0	.	0	0	0	0	0
KRT33B	3884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39521212	39521212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRT33B-90	NM_002279	exon6	c.C916T	p.R306C	TGTAGCGGGCCTC	.	107	104	83	0	.	0	0	0	0	0
KRT31	3881	bcgsc.ca	37	17	39551197	39551197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRT31-90	NM_002277	exon6	c.C1000T	p.R334W	TCTGCCGCTCCAG	.	125	11	126	2	.	0	0	0	0	0
KRT32	3882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39623234	39623234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRT32-90	NM_002278	exon1	c.G344A	p.R115Q	AGCTGCCGCACCC	.	86	38	89	0	.	0	0	0	0	0
KRT14	3861	broad.mit.edu	37	17	39743071	39743071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRT14-91	NM_000526	exon1	c.C16T	p.R6C	ACTGGCGGCTGCA	.	39	4	24	0	.	0	0	0	0	0
KRT17	3872	broad.mit.edu;bcgsc.ca	37	17	39775873	39775873	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRT17-92	NM_000422	exon8	c.C1272T	p.R424R	CTGCTCGCGGGAG	.	707	20	493	0	.	3	3	0	0	0
STAT5B	6777	hgsc.bcm.edu;bcgsc.ca	37	17	40364022	40364023	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	STAT5B-850	NM_012448	exon13	c.1659_1660del	p.553_554del	ACCAGGACACAGA	.	218	197	303	3	.	0	0	0	0	0
CNTNAP1	8506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40838076	40838076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CNTNAP1-525	NM_003632	exon6	c.C817T	p.R273C	TTTGGCCGCGATG	.	164	76	187	0	.	1	0	1	0	0
WNK4	65266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40948205	40948205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNK4-336	NM_032387	exon17	c.C3496T	p.R1166W	TACAGCCGGCTGG	.	52	47	21	0	.	2	0	2	0	0
AOC3	8639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41004636	41004636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AOC3-516	NM_003734	exon1	c.C1276T	p.R426C	ACAATACGTGATG	.	168	9	196	0	.	3	3	0	0	0
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42170066	42170066	+	Silent	SNP	G	G	A	rs199980075		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HDAC5-227	NM_001015053	exon7	c.C753T	p.D251D	GAAGTCGTCTCGA	.	69	60	81	0	G|0.999;A|0.000	8	0	8	0	0
TTLL6	284076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46878650	46878650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TTLL6-90	NM_001130918	exon5	c.G578A	p.R193H	AAAAAGCGGAAAT	.	122	46	183	1	.	1	0	1	0	0
ZNF652	22834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47395005	47395005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF652-91	NM_001145365	exon2	c.G83A	p.R28H	CCACGACGGCTAT	.	218	120	254	0	.	0	0	0	0	0
YPEL2	388403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57430826	57430826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	YPEL2-90	NM_001005404	exon2	c.G56A	p.R19Q	GCCACCGGACCTA	.	123	112	149	0	.	0	0	0	0	0
STRADA	92335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61780974	61780974	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	STRADA-547	NM_001003787	exon13	c.C1281T	p.D427D	CCAATCGTCCACC	.	86	23	132	0	.	15	11	4	0	0
GRIN2C	2905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72843589	72843589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRIN2C-228	NM_000835	exon9	c.C1859T	p.P620L	CCCCGCGGGTTCT	.	114	43	138	0	.	22	7	15	0	0
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73750779	73750779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ITGB4-227	NM_000213	exon34	c.G4441A	p.V1481M	CACCGCGTGCTAA	.	164	151	178	1	.	1	0	1	0	0
ZACN	353174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74077421	74077421	+	Missense_Mutation	SNP	G	G	A	rs143316623	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZACN-90	NM_180990	exon6	c.G607A	p.V203I	GAATACGTAGTTT	.	195	14	221	0	G|0.998;A|0.002	84	73	11	0	0
TNRC6C	57690	bcgsc.ca	37	17	76045635	76045635	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TNRC6C-24	NM_018996	exon4	c.G492A	p.T164T	ACAAACGTCCACT	.	42	37	73	2	.	0	0	0	0	0
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76118720	76118720	+	Missense_Mutation	SNP	C	C	T	rs150505551	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMC6-90	NM_001127198	exon10	c.G1193A	p.R398H	TGGAGGCGGGAGG	.	120	38	61	0	C|1.000;T|0.000	1	1	0	0	0
CYTH1	9267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76695039	76695039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CYTH1-228	NM_017456	exon8	c.G562A	p.V188I	AGAGGACGTAACA	.	104	48	144	0	.	0	0	0	0	0
RPTOR	57521	bcgsc.ca	37	17	78599562	78599562	+	Silent	SNP	C	C	G	rs17848685	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RPTOR-847	NM_001163034	exon2	c.C234G	p.T78T	GAAGACCACGCCC	.	170	7	147	0	C|0.836;G|0.164	0	0	0	0	0
BAIAP2	10458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79031712	79031712	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BAIAP2-90	NM_001144888	exon3	c.C162T	p.D54D	CTTTGACGCCCTG	.	23	20	30	0	.	5	2	3	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	rs61738821	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	4	4	0	0	C|0.850;T|0.150	0	0	0	0	0
SLC38A10	124565	hgsc.bcm.edu	37	17	79219637	79219637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC38A10-70	NM_001037984	exon16	c.C3079A	p.P1027T	CCCCCGGGACAGC	.	96	90	1	0	.	53	5	47	1	0
DUS1L	64118	bcgsc.ca;mdanderson.org	37	17	80019852	80019852	+	Missense_Mutation	SNP	G	G	A	rs138482688		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DUS1L-91	NM_022156	exon6	c.C518T	p.T173M	TGCACCGTCAGCA	.	63	59	41	1	G|1.000;A|0.000	0	0	0	0	0
EMILIN2	84034	ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2891551	2891551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EMILIN2-93	NM_032048	exon4	c.C1426T	p.R476W	ACCCTTCGGGGCG	.	117	48	152	2	.	0	0	0	0	0
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29104699	29104699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DSG2-563	NM_001943	exon8	c.G862A	p.V288I	GTCAACGTAGAAG	.	173	137	250	0	.	0	0	0	0	0
SLC25A52	147407	broad.mit.edu;bcgsc.ca	37	18	29340269	29340269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001034172	exon1	c.C386T	p.A129V	TGGGTTGCAAACT	.	197	8	238	0	.	1	1	0	0	0
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43529494	43529494	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EPG5-580	NM_020964	exon5	c.C1453T	p.R485X	GGCATCGAAGAAT	.	61	24	104	0	.	0	0	0	0	0
MBD1	4152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47796100	47796100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MBD1-228	NM_001204136	exon16	c.C1867A	p.P623T	CTCGTGGGTTCCA	.	144	51	177	0	.	46	17	29	0	0
CNDP2	55748	bcgsc.ca	37	18	72178161	72178161	+	Silent	SNP	T	T	C	rs2278159	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CNDP2-93	NM_018235	exon6	c.T570C	p.Y190Y	GGACTATGTCTGC	.	231	7	266	0	T|0.825;C|0.175	2	2	0	0	0
SHC2	25759	hgsc.bcm.edu;broad.mit.edu	37	19	422360	422360	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SHC2-392	NM_012435	exon11	c.1406delC	p.P469fs	CGGGTAGGGGGGC	.	148	33	7	0	.	0	0	0	0	0
SHC2	25759	hgsc.bcm.edu	37	19	436677	436677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SHC2-392	NM_012435	exon5	c.G727A	p.A243T	GGTTGGCGATGAC	.	156	39	6	0	.	0	0	0	0	0
CFD	1675	hgsc.bcm.edu	37	19	863169	863169	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CFD-514	NM_001928	exon5	c.693delC	p.N231fs	CGGCAACCGCAAG	.	27	14	1	0	.	0	0	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1004687	1004687	+	Missense_Mutation	SNP	T	T	C	rs12978900	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRIN3B-90	NM_138690	exon3	c.T1187C	p.L396S	TGGACTTGGAACC	.	15	5	1	0	T|0.967;C|0.033	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1043419	1043419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ABCA7-98	NM_019112	exon9	c.G877A	p.G293R	ATCCTCGGGAAGC	.	330	65	148	0	.	2	2	0	0	0
C19orf24	55009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1277286	1277286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C19orf24-90	NM_017914	exon2	c.G386A	p.R129Q	AGTCCCGGAATCT	.	304	122	121	0	.	0	0	0	0	0
REEP6	92840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1496349	1496349	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	REEP6-90	NM_138393	exon4	c.C414T	p.R138R	TCAGCGCGTCGTG	.	160	33	26	0	.	181	143	37	1	0
FZR1	51343	hgsc.bcm.edu	37	19	3532525	3532525	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FZR1-227	NM_001136198	exon10	c.1119delG	p.S373fs	GGCCTCGGGGGGC	.	259	125	28	1	.	0	0	0	0	0
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5206812	5206812	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PTPRS-357	NM_002850	exon38	c.C5820T	p.L1940L	GCTTCCGAGGTAC	.	221	51	114	0	.	103	77	26	0	0
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6833562	6833562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VAV1-1276	NM_005428	exon17	c.G1634A	p.R545H	GCTACCGCTGCCA	.	63	27	52	0	.	0	0	0	0	0
INSR	3643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7267587	7267587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INSR-1381	NM_000208	exon2	c.C421T	p.R141W	AACCCCGGGTGAT	.	466	122	323	3	.	1	0	1	0	0
CAMSAP3	57662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7682925	7682925	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001080429	exon19	c.C3813T	p.G1271G	GAAGGGCGGCGGC	.	80	9	31	0	.	120	112	8	0	0
CD320	51293	hgsc.bcm.edu	37	19	8369919	8369921	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CD320-90	NM_016579	exon2	c.262_264del	p.88_88del	ACTGCACTCCTCC	.	50	21	2	1	.	0	0	0	0	0
CD320	51293	hgsc.bcm.edu	37	19	8373152	8373152	+	Missense_Mutation	SNP	T	T	C	rs2232775	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CD320-90	NM_001165895	exon1	c.A23G	p.Q8R	CCAACCTGCGCCA	.	10	10	0	0	T|0.852;C|0.148	24	1	23	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF414-90	NM_032370	exon5	c.G705A	p.P235P	CGGGAACGGCAGG	.	13	9	0	0	C|0.788;T|0.212	8	1	7	0	0
ACTL9	284382	hgsc.bcm.edu	37	19	8807994	8807994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACTL9-154	NM_178525	exon1	c.G1058A	p.R353H	CGGAAGCGACCCT	.	97	28	5	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9049154	9049154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MUC16-566	NM_024690	exon5	c.C32477T	p.T10826M	GGATGCGTGACCA	.	418	94	280	0	.	0	0	0	0	0
COL5A3	50509	hgsc.bcm.edu	37	19	10077378	10077378	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	COL5A3-99	NM_015719	exon63	c.C4503T	p.F1501F	TGGGACGAAGCGC	.	21	4	2	0	.	1	1	0	0	0
EIF3G	8666	broad.mit.edu	37	19	10227826	10227826	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EIF3G-68	NM_003755	exon6	c.339delC	p.P113fs	GGGTCCGGGGGGG	.	159	10	79	0	.	0	0	0	0	0
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10476463	10476463	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TYK2-1009	NM_003331	exon7	c.G741A	p.P247P	TCGGCCCGGCTGG	.	262	146	36	0	.	16	10	6	0	0
FBXW9	84261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12805414	12805414	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FBXW9-227	NM_032301	exon3	c.C672T	p.T224T	CTCATGGGTACTA	.	254	126	143	0	.	0	0	0	0	0
TNPO2	30000	broad.mit.edu;bcgsc.ca	37	19	12816346	12816346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TNPO2-227	NM_013433	exon16	c.G1823A	p.R608H	ACACAGCGCTGGT	.	532	12	283	1	.	25	23	2	0	0
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13356010	13356010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA1A-67	NM_001127221	exon31	c.G4939A	p.V1647M	CAGTCACGAGGAT	.	176	83	111	0	.	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13370425	13370425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA1A-67	NM_001127221	exon27	c.G4344T	p.W1448C	CAGAGCCCACAGC	.	221	115	175	0	.	0	0	0	0	0
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15276714	15276714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NOTCH3-855	NM_000435	exon30	c.C5551T	p.R1851C	CAGCACGGGCATA	.	239	32	68	0	.	2	2	0	0	0
NOTCH3	4854	ucsc.edu	37	19	15292437	15292437	+	Silent	SNP	T	T	C	rs1043997	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NOTCH3-855	NM_000435	exon17	c.A2742G	p.P914P	GTAGCCTGGCGGG	.	419	174	18	4	T|0.238;C|0.762	1	1	0	0	0
OR10H1	26539	bcgsc.ca	37	19	15918802	15918802	+	Missense_Mutation	SNP	C	C	G	rs4808383	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OR10H1-68	NM_013940	exon1	c.G46C	p.G16R	AGAAGCCGACGAG	.	322	8	177	1	C|0.832;G|0.168	0	0	0	0	0
C19orf44	84167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16611814	16611814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C19orf44-90	NM_032207	exon2	c.G211A	p.G71R	GTGCTCGGGAGTG	.	109	59	77	0	.	0	0	0	0	0
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16986968	16986968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SIN3B-228	NM_015260	exon16	c.G2791A	p.V931I	CGCTGCGTCCGCG	.	265	137	55	0	.	45	21	24	0	0
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17283599	17283599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYO9B-67	NM_001130065	exon13	c.G1967A	p.R656Q	ACATGCGGCCAGA	.	144	29	56	0	.	3	3	0	0	0
ANO8	57719	hgsc.bcm.edu	37	19	17435647	17435647	+	Silent	SNP	G	G	A	rs150818557	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANO8-93	NM_020959	exon17	c.C3210T	p.G1070G	CTGCCCGCCCGCC	.	58	35	0	0	G|0.998;A|0.002	28	17	11	0	0
ANO8	57719	broad.mit.edu;bcgsc.ca	37	19	17441307	17441307	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANO8-93	NM_020959	exon9	c.C1000T	p.R334X	TACGTCGCACGCC	.	186	9	49	0	.	3	3	0	0	0
COLGALT1	79709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17679361	17679361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_024656	exon5	c.G668A	p.R223Q	GCAAGCGAGACCG	.	240	50	144	0	.	1	0	1	0	0
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18279340	18279340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PIK3R2-1311	NM_005027	exon14	c.A1792G	p.K598E	GGGATTAAAAATG	.	62	31	55	0	.	48	27	20	0	1
ISYNA1	51477	broad.mit.edu	37	19	18546481	18546481	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ISYNA1-92	NM_016368	exon9	c.C1146T	p.V382V	CTTGATGACCACC	.	73	3	41	0	.	12	12	0	0	0
FKBP8	23770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18650417	18650417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FKBP8-227	NM_012181	exon3	c.C406T	p.R136W	GCACCCGTGTGCC	.	173	80	19	0	.	144	85	59	0	0
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19360612	19360612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NCAN-94	NM_004386	exon15	c.C3858A	p.H1286Q	CCACCACCACCAA	.	365	102	259	0	.	0	0	0	0	0
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21720662	21720662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF429-516	NM_001001415	exon4	c.A1807C	p.N603H	GCTTTTAATCGGT	.	49	13	47	0	.	2	1	1	0	0
GPATCH1	55094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33616095	33616095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPATCH1-91	NM_018025	exon18	c.G2606A	p.R869Q	ACAGGCGGAAGAA	.	183	39	101	0	.	0	0	0	0	0
MLL4	8085	broad.mit.edu;bcgsc.ca	37	19	36217156	36217156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MLL4-697	NM_014727	exon14	c.G3905A	p.R1302H	GTGTGCGCTGTAA	.	499	18	303	1	.	14	14	0	0	0
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36222925	36222925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MLL4-697	NM_014727	exon27	c.G5554A	p.A1852T	GGCAGCGCCCCTC	.	73	18	35	0	.	30	18	12	0	0
LRFN3	79414	hgsc.bcm.edu	37	19	36430696	36430696	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRFN3-90	NM_024509	exon2	c.C369T	p.G123G	ACTGGGCGAGGGC	.	17	10	1	0	.	0	0	0	0	0
ZNF781	163115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38160733	38160733	+	Missense_Mutation	SNP	C	C	T	rs12460961	byhapmap	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF781-90	NM_152605	exon4	c.G317A	p.R106Q	TGATGTCGAATAA	.	66	34	46	0	C|1.000;|0.000	4	1	3	0	0
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38591715	38591715	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SIPA1L3-91	NM_015073	exon6	c.C1878T	p.G626G	GGTGGGCATCCTC	.	177	32	103	0	.	0	0	0	0	0
DPF1	8193	hgsc.bcm.edu	37	19	38713189	38713189	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DPF1-90	NM_001135155	exon2	c.G270A	p.P90P	GGTACCCGGCCCG	.	76	44	3	0	.	0	0	0	0	0
RYR1	6261	broad.mit.edu	37	19	38966036	38966036	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RYR1-100	NM_001042723	exon29	c.C4239T	p.D1413D	TCACGACGTGGTG	.	212	6	53	0	.	0	0	0	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu	37	19	38993359	38993359	+	Silent	SNP	G	G	A	rs201827284		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RYR1-100	NM_001042723	exon48	c.G7827A	p.S2609S	CATGTCGCTCTGC	.	82	37	15	0	G|0.999;A|0.000	0	0	0	0	0
PAK4	10298	hgsc.bcm.edu	37	19	39663757	39663757	+	Missense_Mutation	SNP	G	G	A	rs56099436		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PAK4-957	NM_001014832	exon3	c.G404A	p.R135Q	GCAGCCGAGGCCG	.	10	7	0	0	G|0.989;A|0.011	14	6	8	0	0
SYCN	342898	hgsc.bcm.edu	37	19	39694831	39694831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYCN-68	NM_001080468	exon1	c.G64A	p.A22T	GGCAGGCGCCCTG	.	40	19	2	0	.	0	0	0	0	0
LRFN1	57622	hgsc.bcm.edu	37	19	39805167	39805167	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRFN1-70	NM_020862	exon1	c.C810T	p.D270D	TAAGTCGTCCTCG	.	58	27	3	0	.	5	1	4	0	0
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	40412003	40412003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FCGBP-98	NM_003890	exon7	c.G3625A	p.G1209R	CACATCCGGGGCC	.	169	21	14	0	.	0	0	0	0	0
FCGBP	8857	hgsc.bcm.edu	37	19	40430566	40430566	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FCGBP-98	NM_003890	exon3	c.C1377T	p.G459G	CTTCCCGCCTACC	.	40	14	1	0	.	0	0	0	0	0
B3GNT8	374907	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41931793	41931793	+	Silent	SNP	G	G	A	rs147647792		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	B3GNT8-90	NM_198540	exon3	c.C891T	p.F297F	ACCTTCGAAGAAG	.	166	56	59	1	G|1.000;A|0.000	1	1	0	0	0
IRGC	56269	hgsc.bcm.edu	37	19	44223766	44223766	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IRGC-70	NM_019612	exon2	c.C1056T	p.D352D	GTCCGACGGCGCC	.	84	48	1	0	.	0	0	0	0	0
ZNF296	162979	broad.mit.edu	37	19	45578983	45578983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF296-90	NM_145288	exon2	c.G436A	p.G146S	CCTGGCCGCGGCT	.	178	5	88	0	.	0	0	0	0	0
KLC3	147700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45852157	45852157	+	Missense_Mutation	SNP	G	G	A	rs190310418	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KLC3-91	NM_177417	exon7	c.G947A	p.R316H	GCCAGCGCGCTTT	.	122	29	47	0	G|0.999;A|0.000	7	5	2	0	0
EML2	24139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	46129994	46129994	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EML2-154	NM_001193268	exon11	c.1313delG	p.G438fs	AAGCTGCCCCCCT	.	130	50	77	0	.	0	0	0	0	0
DMWD	1762	hgsc.bcm.edu	37	19	46289388	46289388	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DMWD-90	NM_004943	exon3	c.1366delC	p.L456fs	GGGCCAGGGGGGG	.	143	69	15	1	.	0	0	0	0	0
FKRP	79147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47259950	47259950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FKRP-91	NM_024301	exon4	c.G1243A	p.V415M	TTGCACGTGGACC	.	123	55	34	0	.	15	4	11	0	0
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47571027	47571027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZC3H4-74	NM_015168	exon15	c.C2498T	p.P833L	GAAGCCGGGGGTC	.	83	42	25	0	.	7	3	4	0	0
DHX34	9704	broad.mit.edu;bcgsc.ca	37	19	47856391	47856391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DHX34-231	NM_014681	exon2	c.C104T	p.T35M	CAGAGACGCGTCG	.	199	6	133	0	.	7	7	0	0	0
GLTSCR1	29998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48204610	48204610	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GLTSCR1-48	NM_015711	exon15	c.G3621A	p.S1207S	CCGCTCGCTCGGC	.	98	36	27	0	.	33	14	19	0	0
LMTK3	114783	broad.mit.edu;bcgsc.ca	37	19	49013775	49013775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LMTK3-1357	NM_001080434	exon3	c.G238A	p.A80T	TGAAGGCCAGCAG	.	238	9	166	0	.	0	0	0	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RASIP1-228	NM_017805	exon5	c.C1801T	p.R601C	CCAGGCGGCCCAG	.	5	5	0	0	G|0.738;A|0.262	6	2	4	0	0
BAX	581	hgsc.bcm.edu;bcgsc.ca	37	19	49458971	49458971	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BAX-1271	NM_004324	exon3	c.114delG	p.M38fs	GCGAATGGGGGGG	.	290	119	158	1	.	0	0	0	0	0
PPFIA3	8541	broad.mit.edu	37	19	49641518	49641518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PPFIA3-226	NM_003660	exon16	c.G1910A	p.R637Q	AGAGTCGGGTGTC	.	189	5	120	1	.	5	5	0	0	0
ZNF473	25888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50548675	50548675	+	Silent	SNP	C	C	T	rs146105171		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF473-91	NM_015428	exon5	c.C975T	p.C325C	CGAATGCGGCAAG	.	235	113	144	1	C|1.000;T|0.000	5	1	4	0	0
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52658977	52658977	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF836-46	NM_001102657	exon5	c.A1959G	p.L653L	ACGTGCTAGGCAT	.	177	18	122	0	.	44	35	9	0	0
ZNF701	55762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53086056	53086056	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF701-90	NM_001172655	exon5	c.C942T	p.C314C	TGTATGCGGCAAG	.	375	184	293	0	.	1	1	0	0	0
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53668192	53668192	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF665-70	NM_024733	exon4	c.T1551C	p.N517N	ACACTCATTACAC	.	149	85	90	0	.	4	4	0	0	0
NLRP12	91662	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54314363	54314363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NLRP12-211	NM_144687	exon3	c.G550A	p.V184M	TCCTCGCGTGTCC	.	234	98	92	1	.	0	0	0	0	0
LILRB2	10288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54782326	54782326	+	Missense_Mutation	SNP	C	C	T	rs202223934		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LILRB2-91	NM_005874	exon7	c.G1046A	p.R349Q	AACTGCCGCCATG	.	589	282	424	1	C|0.999;T|0.001	0	0	0	0	0
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55144512	55144512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LILRB1-137	NM_001081637	exon7	c.C1004T	p.T335M	GCCCCACGGTGGC	.	356	67	185	0	.	0	0	0	0	0
KIR2DL4	3805	hgsc.bcm.edu	37	19	55324635	55324635	+	Silent	SNP	T	T	C	rs649216	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIR2DL4-70	NM_001080772	exon6	c.C762C	p.F254F	CCTCTTTACCATC	.	71	71	0	0	T|0.653;C|0.347	0	0	0	0	0
FAM71E2	284418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55872251	55872251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001145402	exon7	c.G781A	p.D261N	TTCTGTCGGGGCG	.	119	27	84	0	.	0	0	0	0	0
SBK2	646643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56042650	56042650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SBK2-68	NM_001101401	exon3	c.G316A	p.E106K	AGAACTCGTACAG	.	173	43	20	1	.	0	0	0	0	0
FIZ1	84922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56105009	56105009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FIZ1-90	NM_032836	exon3	c.G298A	p.V100I	TGTGGACGACCTA	.	295	133	119	0	.	0	0	0	0	0
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57066397	57066397	+	Missense_Mutation	SNP	G	G	A	rs139300625		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZFP28-91	NM_020828	exon8	c.G2243A	p.R748H	GTCATCGCAGAAG	.	120	26	72	0	G|1.000;A|0.000	6	5	1	0	0
ZNF264	9422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57723746	57723746	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF264-92	NM_003417	exon4	c.C1281T	p.F427F	GCCCTTCGTGTGC	.	157	25	98	0	.	2	2	0	0	0
ZNF805	390980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57765484	57765484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001023563	exon4	c.G1297A	p.G433R	GAATGCGGAAAGG	.	125	52	81	0	.	2	2	0	0	0
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58004983	58004983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF419-90	NM_001098491	exon5	c.G1061A	p.S354N	TCTATAGCCACAA	.	150	26	113	0	.	10	8	2	0	0
ZNF135	7694	broad.mit.edu	37	19	58578302	58578302	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF135-91	NM_007134	exon4	c.G522A	p.T174T	CTTCACGCCTGTG	.	208	6	154	0	.	6	6	0	0	0
ZSCAN18	65982	broad.mit.edu	37	19	58600183	58600183	+	Missense_Mutation	SNP	G	G	A	rs73058515	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZSCAN18-90	NM_001145542	exon3	c.C593T	p.A198V	GAGCCCGCAGGGG	.	89	45	43	2	G|1.000;T|0.000	6	3	3	0	0
TSSC1	7260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3196229	3196229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TSSC1-90	NM_003310	exon8	c.C945T	p.D315D	ATCGTCGTCTACC	.	190	18	200	0	.	19	16	3	0	0
TRIM54	57159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27505759	27505759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TRIM54-227	NM_187841	exon1	c.G160A	p.V54I	AACGACGTCTTCC	.	133	119	170	1	.	0	0	0	0	0
FOSL2	2355	ucsc.edu;bcgsc.ca	37	2	28627094	28627094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FOSL2-712	NM_005253	exon2	c.C223A	p.P75T	TCCAACCCATACC	.	190	166	190	2	.	5	1	4	0	0
FOXN2	3344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48602109	48602109	+	Missense_Mutation	SNP	G	G	A	rs200645756		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FOXN2-226	NM_002158	exon7	c.G823A	p.G275S	AGTTACGGCAATG	.	184	153	269	1	G|0.999;A|0.001	0	0	0	0	0
FSHR	2492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	49244660	49244660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FSHR-527	NM_181446	exon4	c.G342T	p.E114D	GAAGGCCTCAGGG	.	99	87	166	0	.	0	0	0	0	0
NRXN1	9378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50149257	50149257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NRXN1-92	NM_001135659	exon24	c.A4469T	p.Y1490F	ATGGCATAGAGGA	.	163	143	208	2	.	0	0	0	0	0
EML6	400954	hgsc.bcm.edu;bcgsc.ca	37	2	55176077	55176077	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001039753	exon28	c.4063delA	p.K1355fs	ATCACCAAAAAAA	.	75	58	118	1	.	0	0	0	0	0
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61571010	61571010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	USP34-579	NM_014709	exon16	c.T2440C	p.S814P	GGTGAGATGTCAG	.	232	201	278	0	.	0	0	0	0	0
TET3	200424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74273495	74273495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_144993	exon1	c.G46A	p.A16T	CTAAGCGCCTCAG	.	90	17	98	0	.	0	0	0	0	0
WDR54	84058	broad.mit.edu	37	2	74649393	74649393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WDR54-90	NM_032118	exon2	c.A113G	p.H38R	TGGTTCATGGACC	.	225	7	104	0	.	9	9	0	0	0
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	121744055	121744055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GLI2-954	NM_005270	exon12	c.C2158T	p.R720C	CAGCTGCGCAAAC	.	248	216	167	1	.	4	0	4	0	0
PROC	5624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	128185950	128185950	+	Missense_Mutation	SNP	C	C	T	rs121918154		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PROC-90	NM_000312	exon9	c.C814T	p.R272C	CTGCGGCGCTGGG	.	125	7	99	0	.	0	0	0	0	0
CCDC74B	91409	bcgsc.ca	37	2	130897620	130897620	+	Missense_Mutation	SNP	A	A	G	rs76485676	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC74B-90	NM_207310	exon6	c.T926C	p.V309A	TCCGGGACTGCCT	.	50	41	70	2	A|0.879;G|0.121	167	0	167	0	0
POTEJ	653781	bcgsc.ca	37	2	131414645	131414645	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	.	.	.	.	CCGAGGCCCCCCT	.	173	137	185	2	.	0	0	0	0	0
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	157186454	157186454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NR4A2-189	NM_006186	exon3	c.C245T	p.P82L	GACAGGGGCATTT	.	234	15	309	0	.	0	0	0	0	0
ERMN	57471	broad.mit.edu;bcgsc.ca	37	2	158182171	158182171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ERMN-92	NM_001009959	exon2	c.G23A	p.R8Q	TGAATCCGATCTG	.	83	7	119	1	.	0	0	0	0	0
KCNH7	90134	broad.mit.edu;bcgsc.ca	37	2	163302907	163302907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KCNH7-95	NM_033272	exon7	c.C1175T	p.T392I	CGTGGTGTCTGCA	.	129	6	188	1	.	0	0	0	0	0
SCN3A	6328	broad.mit.edu;bcgsc.ca	37	2	165947568	165947568	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCN3A-141	NM_006922	exon28	c.A5095T	p.M1699L	AGATCATGCTGTT	.	278	8	418	0	.	0	0	0	0	0
SCN7A	6332	broad.mit.edu	37	2	167298121	167298121	+	Silent	SNP	G	G	A	rs181976611		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCN7A-67	NM_002976	exon14	c.C1942T	p.L648L	CAAACAGCTTCAT	.	234	4	288	0	G|0.999;A|0.001	0	0	0	0	0
COL5A2	1290	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	189898939	189898939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	COL5A2-92	NM_000393	exon54	c.C4357T	p.R1453W	CATTCCGCTTCTG	.	77	12	91	0	.	0	0	0	0	0
SDPR	8436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192700699	192700699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SDPR-92	NM_004657	exon2	c.G1228A	p.D410N	CCCCATCGGAGCG	.	53	46	31	0	.	2	2	0	0	0
SPATS2L	26010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201342532	201342532	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPATS2L-48	NM_001100423	exon13	c.C1455T	p.G485G	CAAAGGCGGTGCC	.	47	21	80	0	.	7	5	2	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EEF1B2-227	NM_021121	exon3	c.A127G	p.S43G	GTGTCCAGCCCAC	.	138	6	166	1	.	81	80	1	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EEF1B2-227	NM_021121	exon3	c.G135A	p.P45P	CCCACCGCCTGCC	.	138	6	169	1	.	67	67	0	0	0
MDH1B	130752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207615686	207615686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MDH1B-94	NM_001039845	exon6	c.C1024T	p.R342C	CAGGGCGTGAATA	.	28	16	66	0	.	0	0	0	0	0
SMARCAL1	50485	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217300105	217300105	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SMARCAL1-293	NM_014140	exon9	c.C1530T	p.N510N	CATCAACGTCGTG	.	190	167	194	2	.	3	0	3	0	0
PLCD4	84812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219498432	219498432	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLCD4-661	NM_032726	exon11	c.C1554T	p.Y518Y	CTTCTACGAGATA	.	67	58	89	1	.	3	0	3	0	0
SLC4A3	6508	bcgsc.ca	37	2	220505265	220505265	+	Silent	SNP	T	T	C	rs684428	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC4A3-157	NM_201574	exon21	c.T3472C	p.L1158L	CAGCGTTTGTTGC	.	153	6	171	1	T|0.289;C|0.711	242	242	0	0	0
SCG2	7857	ucsc.edu	37	2	224462285	224462285	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCG2-69	NM_003469	exon2	c.G1716C	p.G572G	CGGGGGCCCCACA	.	15	1	30	0	.	20	16	4	0	0
AGFG1	3267	hgsc.bcm.edu;bcgsc.ca	37	2	228384741	228384744	+	Frame_Shift_Del	DEL	GAAA	GAAA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAAA	GAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AGFG1-228	NM_004504	exon3	c.339_342del	p.113_114del	AAAAGTGAAAGAG	.	102	91	180	2	.	0	0	0	0	0
UGT1A3	54659	hgsc.bcm.edu;bcgsc.ca	37	2	234638283	234638283	+	Frame_Shift_Del	DEL	T	T	-	rs45586035		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UGT1A3-24	NM_019093	exon1	c.511delT	p.F171fs	ACTGTGTTTTTTT	.	256	207	330	0	T|0.007;-|0.993	0	0	0	0	0
KLHL30	377007	broad.mit.edu	37	2	239059485	239059485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KLHL30-22	NM_198582	exon8	c.G1516A	p.G506S	GAGAATGGCGCGC	.	211	5	25	0	.	0	0	0	0	0
ANO7	50636	bcgsc.ca	37	2	242157228	242157228	+	Silent	SNP	G	G	C	rs78605785	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANO7-92	NM_001001891	exon20	c.G2262C	p.P754P	GCGCCCGGTGGCC	.	115	115	7	0	C|0.028;G|0.842;T|0.130	0	0	0	0	0
CXXC11	285093	hgsc.bcm.edu	37	2	242814035	242814035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_173821	exon2	c.G328A	p.E110K	CCGGGCGAGCAGC	.	13	10	0	0	.	0	0	0	0	0
PDYN	5173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1961122	1961122	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDYN-92	NM_001190898	exon4	c.C612A	p.Y204X	GCGTTTGTACAGG	.	88	83	154	0	.	0	0	0	0	0
FASTKD5	60493	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3127458	3127458	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FASTKD5-90	NM_021826	exon2	c.G2259A	p.A753A	AAGAAACGCCAAC	.	133	119	168	2	.	25	0	25	0	0
C20orf27	54976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3734755	3734755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C20orf27-90	NM_001039140	exon6	c.G550A	p.A184T	GCTCGGCGCCCAC	.	211	55	44	0	.	23	19	4	0	0
ESF1	51575	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	13695562	13695563	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ESF1-91	NM_001276380	exon14	c.2514_2515del	p.838_839del	GCTCTGTTTTGGT	.	46	40	75	0	.	0	0	0	0	0
DZANK1	55184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18424085	18424085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001099407	exon8	c.G653A	p.R218Q	GATGGCCGGGGGG	.	215	199	233	0	.	0	0	0	0	0
CST2	1470	bcgsc.ca	37	20	23805918	23805918	+	Nonsense_Mutation	SNP	G	G	A	rs6049157	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CST2-90	NM_001322	exon2	c.C271T	p.R91X	TGGTTCGGCCCAC	.	332	9	372	1	G|0.988;A|0.012	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061817	26061817	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	.	.	.	.	TTCTCCTGCTTAG	.	60	4	66	1	.	0	0	0	0	0
PLAGL2	5326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30785207	30785207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLAGL2-651	NM_002657	exon3	c.G539A	p.R180H	ACCCGGCGTGAGT	.	95	14	71	0	.	0	0	0	0	0
ASXL1	171023	broad.mit.edu	37	20	31022442	31022442	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ASXL1-2057	NM_015338	exon12	c.1927delG	p.G643fs	ATCGGAGGGGGGG	.	29	22	4	0	.	0	0	0	0	0
LOC149950	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	31189498	31189498	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	.	.	.	.	TGCAAACGTAAGG	.	107	41	157	0	.	0	0	0	0	0
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34778675	34778675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EPB41L1-93	NM_001258329	exon12	c.G1256A	p.R419H	TTGAGCGTTCTTC	.	56	47	59	0	.	24	1	23	0	0
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39793679	39793679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLCG1-911	NM_182811	exon13	c.G1324A	p.V442M	AAGCCCGTGGAGA	.	124	57	169	0	.	14	5	9	0	0
CHD6	84181	broad.mit.edu	37	20	40074318	40074318	+	Silent	SNP	G	G	A	rs139410145	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CHD6-238	NM_032221	exon25	c.C3864T	p.G1288G	GAACACGCCAATG	.	126	5	139	0	G|1.000;A|0.000	2	2	0	0	0
MYBL2	4605	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42328526	42328526	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYBL2-415	NM_002466	exon7	c.C793T	p.R265X	GCAGTGCGAACAC	.	141	135	191	2	.	0	0	0	0	0
CTSA	5476	broad.mit.edu	37	20	44526395	44526395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CTSA-91	NM_000308	exon13	c.G1258A	p.A420T	GACATGGCCTGCA	.	122	5	154	0	.	431	417	14	0	0
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61522425	61522425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DIDO1-96	NM_080797	exon15	c.G3428A	p.R1143H	CGGCCACGGCTGC	.	167	9	186	0	.	2	2	0	0	0
SCAF4	57466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33065781	33065781	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCAF4-90	NM_020706	exon12	c.C1339T	p.R447X	TAGATCGCCTCCT	.	72	17	88	0	.	5	5	0	0	0
ITSN1	6453	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35208767	35208767	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ITSN1-94	NM_001001132	exon29	c.C3492T	p.Y1164Y	GATGTACGACTAC	.	170	76	216	1	.	5	3	2	0	0
SIM2	6493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	38098480	38098480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SIM2-90	NM_005069	exon6	c.G604A	p.D202N	CTGTACGACTCCT	.	117	9	112	0	.	0	0	0	0	0
DSCR6	53820	ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38390297	38390297	+	Silent	SNP	C	C	T	rs138756839	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DSCR6-153	NM_018962	exon4	c.C363T	p.S121S	TGCTTCCGAAGCT	.	43	36	55	0	C|0.999;T|0.001	0	0	0	0	0
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	40667746	40667746	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BRWD1-94	NM_018963	exon7	c.532delA	p.M178fs	TGTGCATTTTTAT	.	93	83	104	0	.	0	0	0	0	0
B3GALT5	10317	ucsc.edu;bcgsc.ca	37	21	41033159	41033159	+	Missense_Mutation	SNP	G	G	A	rs144752439		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	B3GALT5-91	NM_033170	exon3	c.G673A	p.V225M	GGCGACGTGGCGA	.	67	59	74	2	G|1.000;A|0.000	0	0	0	0	0
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45736189	45736189	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PFKL-251	NM_002626	exon8	c.C810T	p.N270N	CCGCAACGGGAAG	.	189	65	97	0	.	12	9	3	0	0
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45744758	45744758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PFKL-251	NM_002626	exon18	c.C1835T	p.T612M	ACATGACGGAGAA	.	143	83	76	0	.	46	30	16	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	.	.	.	.	GCCCCCCTGCTGC	.	54	14	11	0	.	0	0	0	0	0
LOC642852	0	broad.mit.edu	37	21	46713303	46713303	+	RNA	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	.	.	.	.	GCGGAAGGGGGCT	.	117	9	117	0	.	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46900432	46900432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	COL18A1-90	NM_030582	exon11	c.C1990T	p.R664W	GCCCTGCGGGTGA	.	50	5	70	0	.	0	0	0	0	0
PRMT2	3275	broad.mit.edu;bcgsc.ca	37	21	48068519	48068519	+	Silent	SNP	G	G	A	rs150978784		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRMT2-91	NM_001242864	exon5	c.G477A	p.A159A	CTATGCGCGGCCT	.	90	5	112	0	G|0.999;A|0.001	18	16	2	0	0
CECR5	27440	hgsc.bcm.edu	37	22	17640022	17640022	+	Silent	SNP	G	G	C	rs11550530		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CECR5-514	NM_033070	exon1	c.C120G	p.P40P	CTGAGCGGGGCCC	.	5	5	0	0	.	0	0	0	0	0
PRODH	5625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	18900804	18900804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRODH-289	NM_016335	exon15	c.C1687T	p.R563C	CACGGCGGGACAA	.	187	10	81	0	.	1	1	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28194988	28194988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MN1-993	NM_002430	exon1	c.C1544T	p.P515L	GGGGCCGGATGCT	.	103	6	4	0	.	0	0	0	0	0
TTC28	23331	hgsc.bcm.edu;broad.mit.edu	37	22	28389367	28389367	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001145418	exon18	c.5384delC	p.P1795fs	CTGGTTGGGGGGT	.	45	22	7	0	.	0	0	0	0	0
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29444383	29444383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNRF3-69	NM_001206998	exon7	c.C919T	p.R307W	GAGCTGCGGGTCA	.	161	145	169	1	.	0	0	0	0	0
SLC35E4	339665	hgsc.bcm.edu	37	22	31032952	31032952	+	Missense_Mutation	SNP	T	T	G	rs150781327	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC35E4-90	NM_001001479	exon1	c.T515G	p.L172R	TCTGCCTGGGGGC	.	20	17	0	0	T|0.995;G|0.005	4	0	4	0	0
TMPRSS6	164656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	37466579	37466579	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMPRSS6-292	NM_153609	exon15	c.1813delG	p.A605fs	TGAGGGCCCCCCC	.	135	112	92	0	.	0	0	0	0	0
BAIAP2L2	80115	broad.mit.edu;bcgsc.ca	37	22	38482353	38482394	+	In_Frame_Del	DEL	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BAIAP2L2-91	NM_025045	exon12	c.1322_1363del	p.441_455del	TTGGGGTGCGGGA	.	34	0	12	0	.	0	0	0	0	0
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39966861	39966861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA1I-135	NM_001003406	exon1	c.C104T	p.P35L	CCTCCCCGCCAGG	.	74	7	33	0	.	1	1	0	0	0
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	40661638	40661638	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TNRC6B-22	NM_001162501	exon5	c.1404delA	p.S468fs	TGGGTCAAAAAAT	.	55	45	67	0	.	0	0	0	0	0
FBLN1	2192	bcgsc.ca	37	22	45959041	45959041	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FBLN1-515	NM_001996	exon15	c.C1947T	p.P649P	TGTCCCCGAGCCC	.	162	6	186	0	.	14	13	1	0	0
MLC1	23209	hgsc.bcm.edu	37	22	50502469	50502469	+	Silent	SNP	A	A	G	rs11568190	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MLC1-91	NM_015166	exon11	c.T1053C	p.A351A	CTCCCCAGCCAGG	.	18	12	0	0	A|0.901;G|0.099	0	0	0	0	0
THUMPD3	25917	bcgsc.ca	37	3	9422210	9422210	+	Silent	SNP	T	T	C	rs2596916	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	THUMPD3-227	NM_001114092	exon7	c.T1032C	p.C344C	TGACTGTTTCCAT	.	73	5	94	0	T|0.410;C|0.590	3	3	0	0	0
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14552686	14552686	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRIP2-69	.	.	.	.	GTCCTCGTCCTTC	.	89	76	109	0	.	0	0	0	0	0
NR2C2	7182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15071882	15071882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NR2C2-226	NM_003298	exon10	c.G1090A	p.V364I	ATCCACGTCATCA	.	183	164	207	0	.	5	2	3	0	0
CTDSPL	10217	bcgsc.ca	37	3	38017252	38017252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CTDSPL-90	NM_001008392	exon7	c.G572A	p.R191Q	GGGCCCGGCTCTT	.	49	27	75	3	.	2	0	2	0	0
TTC21A	199223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39180220	39180220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TTC21A-91	NM_145755	exon29	c.G3904A	p.D1302N	CACCCCGACTACC	.	106	93	146	1	.	7	0	7	0	0
NKTR	4820	bcgsc.ca	37	3	42660604	42660604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NKTR-93	NM_005385	exon4	c.G226T	p.G76W	CAGGGTGGGGACT	.	67	4	106	0	.	0	0	0	0	0
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42771959	42771959	+	Missense_Mutation	SNP	C	C	T	rs141485184	by1000genomes;alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC13-91	NM_144719	exon13	c.G1718A	p.R573Q	TGTTACCGTTTCT	.	131	115	181	0	C|0.999;G|0.000	0	0	0	0	0
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47036641	47036641	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NBEAL2-69	NM_015175	exon13	c.G1416A	p.A472A	CCTAGCGCAACGC	.	109	99	8	0	.	2	1	1	0	0
KIF9	64147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47312930	47312930	+	Missense_Mutation	SNP	G	G	A	rs201201745		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIF9-91	NM_182902	exon5	c.C388T	p.R130C	TGGGGCGTTCTTC	.	80	8	126	0	G|1.000;A|0.000	0	0	0	0	0
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47465429	47465429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCAP-91	NM_012235	exon9	c.G1144A	p.A382T	CTTGGGCGATCCG	.	88	75	116	0	.	0	0	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395482	49395482	+	Missense_Mutation	SNP	G	G	C	rs75404373	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPX1-68	.	.	.	.	TTGCACGGGAAGC	.	98	17	17	0	G|0.333;C|0.667	245	245	0	0	0
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49694175	49694175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BSN-97	NM_003458	exon5	c.C7186T	p.R2396W	CTAGAGCGGGAAC	.	337	123	250	0	.	0	0	0	0	0
SEMA3G	56920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52475300	52475300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SEMA3G-70	NM_020163	exon7	c.C793T	p.R265C	CCACGCGGCTGAC	.	160	152	123	1	.	0	0	0	0	0
GNL3	26354	bcgsc.ca	37	3	52727736	52727736	+	Silent	SNP	A	A	G	rs4532127	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GNL3-90	NM_014366	exon13	c.A1413G	p.E471E	ACATGAAGAATTG	.	253	8	313	3	A|0.878;G|0.122	45	45	0	0	0
MAGI1	9223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	65365023	65365023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAGI1-661	NM_015520	exon18	c.G2992A	p.D998N	CCACGTCGTAGGG	.	74	73	32	0	.	3	1	2	0	0
NXPE3	91775	broad.mit.edu;bcgsc.ca	37	3	101520735	101520735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_145037	exon5	c.C750A	p.F250L	CTGCTTCAAACCA	.	73	30	67	2	.	1	0	1	0	0
PLCXD2	257068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111432936	111432936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLCXD2-227	NM_001185106	exon3	c.G827A	p.R276Q	TTGCCCGGGGCTT	.	33	33	18	0	.	0	0	0	0	0
TAGLN3	29114	broad.mit.edu	37	3	111718285	111718285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TAGLN3-90	NM_001008272	exon2	c.C16T	p.P6S	AGGGGCCCGAGCT	.	59	17	78	2	.	0	0	0	0	0
FBXO40	51725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121341510	121341510	+	Missense_Mutation	SNP	G	G	A	rs143415272		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FBXO40-273	NM_016298	exon3	c.G1234A	p.V412I	GGCCACGTCATCT	.	103	83	129	0	G|1.000;A|0.000	0	0	0	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLXNA1-93	NM_032242	exon1	c.T108G	p.G36G	CGGGGGTTCACAG	.	121	19	16	1	.	1	1	0	0	0
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129370538	129370538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMCC1-91	NM_001017395	exon6	c.G1748A	p.R583Q	AGGTTCCGGGCAG	.	149	134	161	0	.	2	0	2	0	0
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132407633	132407633	+	Missense_Mutation	SNP	C	C	T	rs150867534		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NPHP3-91	NM_153240	exon21	c.G2986A	p.V996M	ACTGCACGTATAC	.	87	10	79	0	C|0.999;T|0.000	4	4	0	0	0
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	134322975	134322975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KY-24	NM_178554	exon11	c.G1432A	p.G478R	AGCGCCCGTCGCT	.	65	7	72	0	.	0	0	0	0	0
IL20RB	53833	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	136701009	136701009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IL20RB-91	NM_144717	exon3	c.G223A	p.E75K	GAGTACGAGAGCC	.	140	47	188	0	.	0	0	0	0	0
SLC9A9	285195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142987727	142987727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC9A9-229	NM_173653	exon15	c.A1700G	p.Q567R	TAGGCTTGAGGAC	.	172	73	233	0	.	0	0	0	0	0
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151164728	151164728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IGSF10-102	NM_178822	exon4	c.G3041T	p.R1014M	ATTTTCCTCTGCC	.	72	62	112	0	.	0	0	0	0	0
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164907802	164907802	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLITRK3-100	NM_014926	exon2	c.C817T	p.R273X	TTTCTCGTAGGTC	.	55	50	91	0	.	0	0	0	0	0
MYNN	55892	broad.mit.edu;bcgsc.ca	37	3	169500336	169500336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYNN-91	NM_001185118	exon6	c.G1304A	p.R435H	ATGTCCGTAGGCA	.	180	7	126	0	.	3	3	0	0	0
DCUN1D1	54165	bcgsc.ca	37	3	182681740	182681740	+	Silent	SNP	C	C	T	rs4859146	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DCUN1D1-91	NM_020640	exon3	c.G318A	p.A106A	CTTCCACGCAATA	.	112	6	174	1	C|0.308;T|0.692	5	5	0	0	0
CHRD	8646	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	184100913	184100913	+	Missense_Mutation	SNP	G	G	A	rs201032668		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CHRD-93	NM_003741	exon10	c.G1175A	p.R392H	GGCTGCGCATCAG	.	74	31	39	1	G|0.999;A|0.000	1	1	0	0	0
ETV5	2119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185766567	185766567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ETV5-706	NM_004454	exon13	c.C1394T	p.P465L	AGGAACGGACGCT	.	194	171	232	0	.	4	1	3	0	0
FAM157A	728262	bcgsc.ca	37	3	197880129	197880129	+	Missense_Mutation	SNP	T	T	C	rs28554473		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001145248	exon2	c.T208C	p.W70R	AAGAACTGGCAGC	.	752	300	413	12	.	0	0	0	0	0
FAM157A	728262	bcgsc.ca	37	3	197880139	197880139	+	Missense_Mutation	SNP	A	A	G	rs1820791		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001145248	exon2	c.A218G	p.Q73R	AGCAGCAGCAGCA	.	934	334	488	14	.	0	0	0	0	0
UVSSA	57654	broad.mit.edu	37	4	1373989	1373989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_020894	exon11	c.C1723T	p.R575W	GACGGCCGGCTCT	.	224	10	24	0	.	2	1	1	0	0
UVSSA	57654	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	1374002	1374002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_020894	exon11	c.G1736A	p.R579H	GTGAGCGCCAAGA	.	161	81	10	0	.	2	0	2	0	0
MFSD10	10227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2933798	2933798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MFSD10-68	NM_001120	exon6	c.G776A	p.R259H	TGGCCACGAGCGA	.	133	20	20	0	.	47	37	10	0	0
ADRA2C	152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3768709	3768709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADRA2C-522	NM_000683	exon1	c.G376A	p.V126M	TGCGGCGTGTACC	.	178	45	25	0	.	3	3	0	0	0
CRMP1	1400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	5844857	5844857	+	Missense_Mutation	SNP	G	G	A	rs142255876		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRMP1-92	NM_001014809	exon7	c.C995T	p.T332M	GGACCCGTGATGC	.	359	31	216	0	G|1.000;A|0.000	6	5	1	0	0
SORCS2	57537	broad.mit.edu	37	4	7716056	7716056	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SORCS2-91	NM_020777	exon16	c.G2079A	p.A693A	GTCGGCGCTCACG	.	276	13	75	1	.	0	0	0	0	0
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7738821	7738821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SORCS2-91	NM_020777	exon26	c.G3337A	p.A1113T	GTGTACGCCCAAA	.	273	110	125	0	.	3	3	0	0	0
WDR1	9948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10086077	10086077	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WDR1-48	NM_017491	exon9	c.C1029T	p.D343D	GTGTCCGTCGTGG	.	324	54	220	0	.	0	0	0	0	0
FAM184B	27146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17636715	17636715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM184B-23	NM_015688	exon16	c.G2806A	p.A936T	ATGCTGCGTAGTG	.	95	29	71	0	.	1	1	0	0	0
SLIT2	9353	broad.mit.edu;bcgsc.ca	37	4	20469421	20469421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLIT2-521	NM_004787	exon5	c.C442T	p.R148C	GCTTTCCGTGGGG	.	169	8	168	0	.	0	0	0	0	0
PPARGC1A	10891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	23803958	23803958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PPARGC1A-230	NM_013261	exon11	c.G2030A	p.R677H	ATCACACGGCGCT	.	177	77	109	1	.	0	0	0	0	0
CCDC149	91050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	24821571	24821571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC149-68	NM_173463	exon12	c.G1069A	p.D357N	TGGGGTCGCTGAA	.	253	113	150	0	.	17	4	13	0	0
FRYL	285527	hgsc.bcm.edu;bcgsc.ca	37	4	48555392	48555394	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FRYL-69	NM_015030	exon36	c.4273_4275del	p.1425_1425del	AATGACCTTCTTC	.	100	30	85	0	.	0	0	0	0	0
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55973911	55973911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KDR-2298	NM_002253	exon10	c.G1405A	p.E469K	TGGGCTCGTTGGC	.	282	147	190	0	.	0	0	0	0	0
CLOCK	9575	hgsc.bcm.edu	37	4	56336954	56336954	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CLOCK-515	NM_004898	exon8	c.368delT	p.L123X	ATTGCTAAAAAAA	.	160	85	155	1	.	0	0	0	0	0
HNRPDL	9987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83347682	83347682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HNRPDL-91	NM_031372	exon6	c.G1126A	p.G376R	CATATCCGCCATA	.	156	70	116	0	.	119	79	39	1	0
SEC31A	22872	hgsc.bcm.edu	37	4	83785565	83785565	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SEC31A-268	NM_001077206	exon11	c.1384delA	p.I462fs	CATCAATTTTTTT	.	108	56	47	1	.	0	0	0	0	0
PKD2	5311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88996108	88996108	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PKD2-91	NM_000297	exon14	c.C2667T	p.A889A	GGTGGCCGAGGTC	.	295	78	231	0	.	0	0	0	0	0
FAM13A	10144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89670963	89670963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM13A-70	NM_014883	exon16	c.C2038T	p.R680W	ACTTCCGGATCTT	.	133	37	68	2	.	3	3	0	0	0
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138442414	138442414	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDH18-185	NM_019035	exon4	c.T3177C	p.S1059S	ATGCGTACTGGCT	.	267	104	170	0	.	11	5	6	0	0
MAP9	79884	broad.mit.edu	37	4	156273869	156273869	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAP9-91	NM_001039580	exon13	c.1700delA	p.K567fs	GCTTCCTTTTTTT	.	15	6	8	0	.	0	0	0	0	0
GUCY1B3	2983	broad.mit.edu;bcgsc.ca	37	4	156680986	156680986	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_000857	exon2	c.C51T	p.Y17Y	CAATTACGGCCCC	.	241	121	127	1	.	0	0	0	0	0
FRG1	2483	bcgsc.ca	37	4	190878626	190878626	+	Missense_Mutation	SNP	G	G	A	rs71229055		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FRG1-90	NM_004477	exon6	c.G506A	p.S169N	CAAAAAGTAAAAC	.	929	58	921	16	G|0.500;A|0.500	123	123	0	0	0
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1339097	1339097	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CLPTM1L-153	NM_030782	exon4	c.G477A	p.P159P	ACTCGTCGGCTTC	.	322	160	133	0	.	1	1	0	0	0
ADAMTS16	170690	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5146290	5146290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADAMTS16-275	NM_139056	exon3	c.G223A	p.V75M	GATTACGTGTCCC	.	221	80	150	1	.	0	0	0	0	0
TRIO	7204	hgsc.bcm.edu	37	5	14488142	14488142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TRIO-562	NM_007118	exon48	c.G7405A	p.G2469S	TCTCTCGGCAAGG	.	22	7	2	0	.	8	3	5	0	0
MYO10	4651	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16701081	16701081	+	Silent	SNP	C	C	T	rs150139256	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYO10-3	NM_012334	exon25	c.G3423A	p.A1141A	GGACTGCGCCCCC	.	278	124	129	2	C|0.999;T|0.000	1	0	1	0	0
DROSHA	29102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	31526976	31526976	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DROSHA-227	NM_013235	exon4	c.C64T	p.R22X	CTCCTCGTCCTCG	.	60	12	65	0	.	3	3	0	0	0
C1QTNF3	114899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34043081	34043081	+	Silent	SNP	G	G	A	rs143587337		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C1QTNF3-90	NM_181435	exon1	c.C150T	p.S50S	GGAGCCGCTACGG	.	167	85	98	0	G|1.000;A|0.000	0	0	0	0	0
SLC38A9	153129	broad.mit.edu	37	5	54941671	54941671	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC38A9-68	NM_173514	exon12	c.1113delT	p.F371fs	ATGAATAAAAAAA	.	35	9	34	0	.	0	0	0	0	0
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56189493	56189493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAP3K1-956	NM_005921	exon20	c.C4525T	p.R1509C	GTCTTTCGTACTA	.	233	111	186	0	.	2	1	1	0	0
ELOVL7	79993	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	60062450	60062450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ELOVL7-90	NM_001104558	exon5	c.G344A	p.R115H	CAGGTACGTGCCA	.	240	103	221	1	.	0	0	0	0	0
ELOVL7	79993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60067887	60067887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ELOVL7-90	NM_001104558	exon3	c.C98T	p.S33L	AGAGGCGAGGACA	.	262	56	162	0	.	2	2	0	0	0
ZSWIM6	57688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60839386	60839386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_020928	exon14	c.G2890A	p.V964I	ACCATCGTCCGCC	.	230	55	141	0	.	2	1	1	0	0
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65118697	65118697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NLN-90	NM_020726	exon13	c.C2069A	p.P690Q	GTGAGCCAAACCA	.	168	41	108	0	.	1	1	0	0	0
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74028894	74028894	+	Missense_Mutation	SNP	G	G	A	rs139234343		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GFM2-90	NM_032380	exon16	c.C1540T	p.R514C	CTTCACGCTGAAG	.	97	18	77	0	G|1.000;A|0.000	12	11	1	0	0
THBS4	7060	hgsc.bcm.edu	37	5	79331430	79331430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	THBS4-90	NM_003248	exon1	c.G70A	p.A24T	GCAGGCGCCCAGG	.	12	9	0	0	.	0	0	0	0	0
SERINC5	256987	broad.mit.edu	37	5	79473787	79473787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SERINC5-1	NM_001174071	exon3	c.G295A	p.A99T	AACAAGCCATTCC	.	151	5	143	0	.	11	11	0	0	0
NR2F1	7025	bcgsc.ca	37	5	92924033	92924033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NR2F1-227	NM_005654	exon2	c.G874A	p.V292I	GACCGCGTCGTGG	.	207	101	53	2	.	2	0	2	0	0
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131014837	131014837	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FNIP1-92	NM_133372	exon12	c.C1234T	p.R412X	CAATTCGTGGCAT	.	413	220	327	0	.	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	4	4	0	0	G|0.980;C|0.020	0	0	0	0	0
PHF15	23338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133896521	133896521	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHF15-90	NM_015288	exon6	c.T558C	p.I186I	GGCCATTGAGACG	.	437	60	283	0	.	4	4	0	0	0
PHF15	23338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	133896569	133896569	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHF15-90	NM_015288	exon6	c.C606T	p.C202C	TGTCTGCGACGTG	.	491	248	314	0	.	12	2	10	0	0
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	135692634	135692634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001167576	exon2	c.G442A	p.D148N	CGTCGTCGCGCAG	.	162	79	11	0	.	0	0	0	0	0
SIL1	64374	broad.mit.edu	37	5	138282960	138282960	+	Missense_Mutation	SNP	C	C	T	rs192255604		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SIL1-90	NM_001037633	exon11	c.G1232A	p.R411H	CGGTAGCGGTCCC	.	319	9	14	0	C|0.999;T|0.000	219	213	6	0	0
TMEM173	340061	ucsc.edu;bcgsc.ca	37	5	138861257	138861257	+	Silent	SNP	C	C	T	rs149842998	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMEM173-69	NM_198282	exon3	c.G33A	p.P11P	GGGACACGGGATG	.	450	242	278	3	C|0.999;T|0.001	0	0	0	0	0
WDR55	54853	hgsc.bcm.edu;bcgsc.ca	37	5	140049102	140049102	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WDR55-91	NM_017706	exon7	c.1015delA	p.K339fs	CGGCGCAAAAAAA	.	436	209	250	2	.	0	0	0	0	0
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140181912	140181912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHA3-98	NM_031497	exon1	c.G1130A	p.R377H	CCGACCGCGACTC	.	451	97	221	0	.	1	1	0	0	0
PCDHA7	56141	broad.mit.edu;bcgsc.ca	37	5	140214422	140214422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHA7-94	NM_031852	exon1	c.T454C	p.F152L	TCTCGGTTTCCAC	.	782	26	517	0	.	0	0	0	0	0
PCDHA13	56136	hgsc.bcm.edu	37	5	140263870	140263870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHA13-75	NM_031865	exon1	c.G2017A	p.G673S	GAGAGCGGCCAAG	.	129	31	4	0	.	0	0	0	0	0
PCDHB5	26167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140515676	140515676	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHB5-95	NM_015669	exon1	c.G660A	p.P220P	GGCTCCGCCCAGG	.	201	56	112	2	.	1	1	0	0	0
PCDHB12	56124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140589396	140589396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHB12-93	NM_018932	exon1	c.C917A	p.P306H	CAGCACCTTTGGA	.	92	19	88	1	.	1	0	1	0	0
PCDHB13	56123	hgsc.bcm.edu	37	5	140595625	140595625	+	Missense_Mutation	SNP	G	G	A	rs76927815		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHB13-93	NM_018933	exon1	c.G1930A	p.V644I	GTGCTGGTCAAGG	.	24	14	0	0	G|0.500;A|0.500	46	41	5	0	0
PCDHGC4	56098	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140865109	140865109	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHGC4-72	NM_018928	exon1	c.C369T	p.I123I	AGAGATCGTAGAT	.	167	10	127	0	.	0	0	0	0	0
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141051181	141051181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARAP3-291	NM_022481	exon12	c.C1810T	p.R604W	GCTTCCGGAAGAG	.	195	86	129	0	.	1	1	0	0	0
SCGB3A2	117156	bcgsc.ca	37	5	147261610	147261610	+	Silent	SNP	G	G	A	rs34212847	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCGB3A2-153	NM_054023	exon3	c.G279A	p.V93V	CTTGGTGTGACAT	.	212	8	122	1	G|0.980;A|0.020	0	0	0	0	0
CSF1R	1436	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149435889	149435889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CSF1R-2640	NM_005211	exon18	c.G2335A	p.V779M	CTGCCACGTCCCG	.	416	114	227	2	.	0	0	0	0	0
C1QTNF2	114898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	159781908	159781908	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C1QTNF2-91	NM_031908	exon2	c.C246G	p.S82R	AGGCAGGCTGCAG	.	33	27	14	0	.	0	0	0	0	0
NUDCD2	134492	hgsc.bcm.edu	37	5	162886888	162886888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NUDCD2-90	NM_145266	exon1	c.G169A	p.G57S	GGCCGCCCACCGA	.	99	10	17	0	.	4	4	0	0	0
TENM2	57451	broad.mit.edu;bcgsc.ca	37	5	167643865	167643865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001122679	exon22	c.G4144A	p.G1382S	CTGCTGGGCTCCA	.	258	11	169	0	.	0	0	0	0	0
FGFR4	2264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176520335	176520335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FGFR4-1460	NM_022963	exon8	c.A1060G	p.T354A	ACAGGTACTGGGC	.	151	56	68	0	.	0	0	0	0	0
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176638620	176638620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NSD1-188	NM_022455	exon5	c.C3220T	p.R1074C	CGAGAACGTGGAG	.	456	35	314	0	.	0	0	0	0	0
COL23A1	91522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177669111	177669111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	COL23A1-91	NM_173465	exon27	c.G1513A	p.G505S	TCCGGCCGGGGAC	.	156	32	36	0	.	1	1	0	0	0
RNF130	55819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179394008	179394008	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RNF130-227	NM_018434	exon7	c.G948A	p.P316P	CAAATTCGGCTGC	.	126	59	90	0	.	0	0	0	0	0
PXDC1	221749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	3738356	3738356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_183373	exon2	c.G283A	p.D95N	CTATGTCGTGGGC	.	88	82	90	0	.	1	0	1	0	0
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12120284	12120284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HIVEP1-139	NM_002114	exon4	c.G256A	p.V86I	TTCGCCGTTCTTC	.	47	28	40	0	.	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327865	16327867	+	In_Frame_Del	DEL	TGC	TGC	-	rs66949327	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATXN1-93	NM_001128164	exon7	c.675_677del	p.225_226del	CTGAGGTGCTGCT	.	44	8	4	0	.	0	0	0	0	0
ATXN1	6310	hgsc.bcm.edu	37	6	16327906	16327906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATXN1-93	NM_001128164	exon7	c.G636T	p.Q212H	CTGCTGCTGATGC	.	37	12	3	0	.	1	1	0	0	0
VARS2	57176	bcgsc.ca	37	6	30890885	30890885	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VARS2-26	NM_001167734	exon24	c.C2280T	p.G760G	AGCGGGCGACTTG	.	82	71	73	4	.	0	0	0	0	0
HLA-B	3106	hgsc.bcm.edu	37	6	31323953	31323960	+	Frame_Shift_Del	DEL	CCAGCTTG	CCAGCTTG	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CCAGCTTG	CCAGCTTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HLA-B-90	NM_005514	exon3	c.603_610del	p.201_204del	CGCGCTCCAGCTT	.	49	0	47	0	.	0	0	0	0	0
VARS	7407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	31759412	31759412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VARS-93	NM_006295	exon8	c.G1075A	p.A359T	GGATGGCGTTGGT	.	144	123	179	0	.	2	0	2	0	0
CYP21A2	1589	bcgsc.ca	37	6	32007865	32007865	+	Silent	SNP	T	T	C	rs55695018		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CYP21A2-68	.	.	.	.	GGGCTCTGGACAG	.	278	244	275	5	.	1106	7	1098	1	0
SYNGAP1	8831	broad.mit.edu;bcgsc.ca	37	6	33415649	33415649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYNGAP1-48	NM_006772	exon18	c.G3824A	p.R1275Q	TGCGCCGGGACCA	.	161	71	70	2	.	3	1	2	0	0
C6orf106	64771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34558353	34558353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C6orf106-93	NM_024294	exon5	c.G886A	p.G296S	ACTGGCCGAAGGG	.	76	43	65	0	.	2	2	0	0	0
SRPK1	6732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35837637	35837637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SRPK1-359	NM_003137	exon11	c.C1033T	p.R345C	TATCACGTTCCAT	.	89	75	153	0	.	1	0	1	0	0
BRPF3	27154	broad.mit.edu	37	6	36175153	36175153	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BRPF3-92	NM_015695	exon4	c.C1669G	p.H557D	CTCCGGCATGACT	.	265	8	288	0	.	5	5	0	0	0
MDGA1	266727	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	37619964	37619964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MDGA1-91	NM_153487	exon7	c.C1135T	p.R379C	ACATGCGTGCCGG	.	115	55	140	1	.	0	0	0	0	0
DAAM2	23500	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39835483	39835483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DAAM2-228	NM_015345	exon6	c.G626A	p.R209H	GCCTACGCACAGA	.	71	62	106	1	.	1	1	0	0	0
TREM1	54210	bcgsc.ca	37	6	41243926	41243926	+	Missense_Mutation	SNP	G	G	C	rs2234245	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TREM1-577	NM_018643	exon4	c.C642G	p.F214L	ACTCAGGAATCCA	.	161	6	177	2	G|0.729;C|0.271	0	0	0	0	0
CRISP2	7180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49660590	49660590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRISP2-91	NM_001142408	exon10	c.C628A	p.L210I	TTAGGAGATCTTG	.	168	156	203	0	.	0	0	0	0	0
PAQR8	85315	broad.mit.edu	37	6	52268989	52268991	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PAQR8-68	NM_133367	exon2	c.978_980del	p.326_327del	CCTCTCCTTCTTC	.	115	8	130	0	.	0	0	0	0	0
EYS	346007	broad.mit.edu	37	6	66005970	66005970	+	Silent	SNP	G	G	A	rs9345601	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EYS-660	NM_001142800	exon12	c.C1809T	p.V603V	AACATTGACAACA	.	107	4	114	0	G|0.404;A|0.596	0	0	0	0	0
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70423650	70423650	+	Missense_Mutation	SNP	C	C	T	rs143758103		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LMBRD1-91	NM_018368	exon9	c.G802A	p.A268T	TTAAGGCGCGTTT	.	46	44	105	0	A|0.000;C|1.000;T|0.000	0	0	0	0	0
C6orf57	135154	bcgsc.ca	37	6	71289189	71289189	+	Missense_Mutation	SNP	A	A	G	rs1048886	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C6orf57-90	NM_145267	exon2	c.A137G	p.Q46R	TCAAACAGTCCCT	.	63	5	98	0	A|0.787;G|0.213	11	11	0	0	0
DPPA5	340168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	74063857	74063857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DPPA5-90	NM_001025290	exon1	c.G92A	p.R31Q	AGCAGCCGCGTCT	.	75	32	79	0	.	0	0	0	0	0
BEND3	57673	broad.mit.edu;bcgsc.ca	37	6	107390069	107390069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BEND3-71	NM_001080450	exon5	c.C2326T	p.R776W	GCAGCCGCGTGGG	.	85	6	51	0	.	1	1	0	0	0
PLAGL1	5325	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	144269186	144269186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLAGL1-91	NM_001080953	exon6	c.C88T	p.R30W	ACGGCCGCTCCCT	.	274	253	278	2	.	0	0	0	0	0
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	151672365	151672365	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AKAP12-293	NM_005100	exon4	c.2839delC	p.P947fs	GAAGAACCCCCCA	.	33	27	56	0	.	0	0	0	0	0
TBP	6908	bcgsc.ca	37	6	170871058	170871058	+	Silent	SNP	G	G	A	rs113440919		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TBP-91	NM_003194	exon3	c.G234A	p.Q78Q	GCAGCAGCAGCAG	.	89	39	30	2	G|0.500;A|0.500	155	155	0	0	0
ELFN1	392617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	1784620	1784620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001128636	exon2	c.G388A	p.G130S	CTGCGCGGCCTGG	.	168	14	33	0	.	0	0	0	0	0
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4799094	4799094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FOXK1-516	NM_001037165	exon7	c.G1564A	p.V522I	CCCACCGTCACCA	.	109	37	17	0	.	4	3	1	0	0
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	5352513	5352515	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TNRC18-46	NM_001080495	exon27	c.8007_8009del	p.2669_2670del	GTGGAGGAAGAAG	.	55	13	51	0	.	0	0	0	0	0
GRID2IP	392862	ucsc.edu;bcgsc.ca	37	7	6561142	6561142	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001145118	exon6	c.C1002T	p.H334H	CTTGTCGTGGGAG	.	281	91	167	2	.	0	0	0	0	0
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21646323	21646323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAH11-146	.	.	.	.	TTAATGCAGAAAA	.	49	10	38	0	.	2	2	0	0	0
BLVRA	644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43827548	43827548	+	Missense_Mutation	SNP	G	G	A	rs138715080	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BLVRA-91	NM_001253823	exon4	c.G58A	p.G20S	CGAGCCGGCTCCG	.	264	76	221	0	G|1.000;A|0.000	26	18	8	0	0
POLM	27434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44114081	44114081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POLM-229	NM_013284	exon7	c.T884C	p.V295A	GCATCTACATCGG	.	241	142	21	0	.	0	0	0	0	0
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44747186	44747186	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OGDH-228	NM_002541	exon22	c.G2802A	p.S934S	GCTGTCGCCATTC	.	108	66	99	0	.	0	0	0	0	0
H2AFV	94239	ucsc.edu	37	7	44874113	44874113	+	Missense_Mutation	SNP	T	T	C	rs1802437	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	H2AFV-90	NM_012412	exon5	c.A374G	p.Q125R	GTTTTCTGCTGTC	.	62	11	61	1	T|0.997;C|0.003	160	159	1	0	0
PKD1L1	168507	bcgsc.ca	37	7	47840387	47840387	+	Missense_Mutation	SNP	C	C	T	rs13231277	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PKD1L1-145	NM_138295	exon54	c.G8053A	p.A2685T	GGAAGGCGTCTGT	.	180	8	154	0	C|0.858;T|0.142	0	0	0	0	0
PION	54103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76942815	76942815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PION-514	NM_017439	exon28	c.G2261A	p.R754Q	GGAAGCCGCACAA	.	50	21	51	0	.	0	0	0	0	0
CACNA2D1	781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81637024	81637024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA2D1-96	NM_000722	exon16	c.G1411A	p.G471S	ATTGGCCGGTTAT	.	95	34	121	0	.	0	0	0	0	0
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86415919	86415919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRM3-528	NM_000840	exon3	c.G811A	p.V271I	GCGCGCGTCGTGG	.	94	35	16	0	.	0	0	0	0	0
TECPR1	25851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97854151	97854151	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TECPR1-91	NM_015395	exon19	c.G2652A	p.T884T	CTGGTCCGTGCCC	.	150	47	99	0	.	5	5	0	0	0
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98609726	98609726	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TRRAP-923	NM_001244580	exon72	c.C11328T	p.D3776D	CCGGGACGAGATC	.	232	79	183	0	.	29	22	7	0	0
SRRT	51593	broad.mit.edu	37	7	100479332	100479332	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SRRT-92	NM_001128853	exon4	c.304delG	p.G102fs	TATGCTGGGGGGG	.	79	7	51	0	.	0	0	0	0	0
SERPINE1	5054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100778833	100778833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SERPINE1-652	NM_000602	exon6	c.G958A	p.D320N	ATGACCGACATGT	.	88	5	104	0	.	0	0	0	0	0
SPDYE6	729597	bcgsc.ca	37	7	101989090	101989090	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPDYE6-1	NM_001146210	exon6	c.C783T	p.D261D	CTCGTCGTCCTCC	.	1622	118	1447	4	.	2	2	0	0	0
DNAJB9	4189	broad.mit.edu	37	7	108212318	108212318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAJB9-226	NM_012328	exon2	c.G148T	p.A50S	AAGTTGGCCATGA	.	124	5	103	0	.	1	1	0	0	0
LMOD2	442721	ucsc.edu;bcgsc.ca	37	7	123302045	123302045	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LMOD2-68	NM_207163	exon2	c.C405T	p.D135D	CAGTGACGAAGAG	.	160	107	129	2	.	0	0	0	0	0
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133932369	133932369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRGUK-227	NM_144648	exon17	c.G2045A	p.R682H	GGATACGCCCTGA	.	140	80	126	0	.	1	1	0	0	0
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135323345	135323345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NUP205-207	NM_015135	exon38	c.T5306C	p.L1769S	TCATGTTACAGAG	.	185	36	158	0	.	18	12	6	0	0
ATP6V0A4	50617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138417706	138417706	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP6V0A4-91	NM_130841	exon16	c.C1824T	p.H608H	GGGGGCGTGCTGA	.	183	65	107	0	.	0	0	0	0	0
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139818942	139818942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	JHDM1D-91	NM_030647	exon9	c.T1217C	p.V406A	TTGGCTACAAACC	.	69	25	61	0	.	0	0	0	0	0
GSTK1	373156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142965205	142965205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GSTK1-90	NM_001143679	exon6	c.G727A	p.V243M	ATCACCGTGGCCC	.	108	74	119	0	.	199	79	120	0	0
ZNF425	155054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148801944	148801944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF425-136	NM_001001661	exon4	c.G1019A	p.R340H	TTCAGGCGGAAGC	.	48	14	31	0	.	0	0	0	0	0
SMARCD3	6604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150938652	150938652	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SMARCD3-228	NM_001003801	exon8	c.C865T	p.Q289X	CATACTGCCACAG	.	202	47	114	0	.	124	109	15	0	0
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154863297	154863297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HTR5A-155	NM_024012	exon1	c.C688T	p.R230C	AAGTTCCGCGTGG	.	261	64	110	0	.	0	0	0	0	0
RBM33	155435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155534695	155534695	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RBM33-23	NM_053043	exon13	c.G2232A	p.S744S	ACCCTCGCGGGCC	.	336	81	139	0	.	1	1	0	0	0
SHH	6469	hgsc.bcm.edu	37	7	155596413	155596413	+	Silent	SNP	C	C	T	rs9333633	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SHH-1134	NM_000193	exon3	c.G570A	p.S190S	CGCCACCGAGTTC	.	29	5	0	0	C|0.996;T|0.004	6	5	1	0	0
NOM1	64434	hgsc.bcm.edu	37	7	156742868	156742868	+	Missense_Mutation	SNP	C	C	A	rs199647631		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NOM1-90	NM_138400	exon1	c.C437A	p.P146Q	CGCGGCCGTCCCG	.	15	10	0	0	C|0.999;A|0.000	0	0	0	0	0
UBE3C	9690	broad.mit.edu;bcgsc.ca	37	7	157000478	157000478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UBE3C-704	NM_014671	exon13	c.G1658A	p.C553Y	ATGCATGCCTGGG	.	165	6	75	0	.	2	2	0	0	0
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	157013470	157013470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UBE3C-704	NM_014671	exon15	c.G2002A	p.V668M	CTGGACGGTGAGT	.	125	15	52	0	.	0	0	0	0	0
CSMD1	64478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3047597	3047597	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CSMD1-86	NM_033225	exon34	c.C5235T	p.P1745P	GGGCTCGGGGACA	.	126	43	126	0	.	0	0	0	0	0
CSMD1	64478	broad.mit.edu;bcgsc.ca	37	8	3432588	3432588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CSMD1-86	NM_033225	exon10	c.C1223T	p.A408V	GTTCTCGCTGGAA	.	90	28	107	1	.	0	0	0	0	0
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10466464	10466464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RP1L1-139	NM_178857	exon4	c.C5144T	p.T1715M	GGGTCCGTGTGGG	.	76	23	44	0	.	0	0	0	0	0
NUDT18	79873	bcgsc.ca	37	8	21965113	21965113	+	Missense_Mutation	SNP	T	T	C	rs3739435	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_024815	exon5	c.A670G	p.M224V	GCTCCATAGGGTC	.	131	5	64	0	T|0.476;C|0.524	5	5	0	0	0
SORBS3	10174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22421834	22421834	+	Silent	SNP	G	G	A	rs201952170		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SORBS3-90	NM_005775	exon9	c.G714A	p.T238T	CTGGACGGAAGAG	.	162	104	128	0	G|0.999;A|0.000	0	0	0	0	0
LOXL2	4017	broad.mit.edu;bcgsc.ca	37	8	23174525	23174525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LOXL2-272	NM_002318	exon9	c.G1573A	p.G525R	CCTCCCCGTCGTG	.	221	11	43	0	.	0	0	0	0	0
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	35579761	35579761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UNC5D-96	NM_080872	exon9	c.C1151T	p.S384L	TGTACTCGGGCTT	.	222	148	167	0	.	0	0	0	0	0
UNC5D	137970	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	35588557	35588557	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UNC5D-96	NM_080872	exon11	c.C1709G	p.A570G	ACGGTGCCATCCC	.	111	73	143	1	.	2	0	2	0	0
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41561586	41561586	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANK1-716	NM_001142446	exon20	c.C2367T	p.N789N	AGCACCGTTTTTC	.	99	59	114	0	.	0	0	0	0	0
OPRK1	4986	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	54147371	54147371	+	Silent	SNP	C	C	T	rs200269505		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OPRK1-70	NM_000912	exon3	c.G558A	p.S186S	AGATGACGACAGC	.	216	69	185	1	.	0	0	0	0	0
OPRK1	4986	hgsc.bcm.edu	37	8	54163562	54163562	+	Silent	SNP	C	C	A	rs1051660	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OPRK1-70	NM_000912	exon2	c.G36T	p.P12P	AGGGCCCGGCTCC	.	6	4	0	0	C|0.895;A|0.105	0	0	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BHLHE22-90	NM_152414	exon1	c.T185A	p.L62Q	CGCCCCTGGGCTG	.	7	5	0	0	T|0.935;A|0.065	0	0	0	0	0
VCPIP1	80124	hgsc.bcm.edu	37	8	67579170	67579170	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VCPIP1-662	NM_025054	exon1	c.G24T	p.P8P	CGGAGGCGGCGGC	.	27	19	2	0	.	0	0	0	0	0
ESRP1	54845	hgsc.bcm.edu;bcgsc.ca	37	8	95686611	95686611	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ESRP1-94	NM_001122827	exon12	c.1528delA	p.K510fs	TGTCATAAAAAAA	.	263	174	267	3	.	0	0	0	0	0
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	106814998	106814998	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZFPM2-139	NM_012082	exon8	c.G2688A	p.P896P	GTTTCCGAATCCA	.	55	10	46	0	.	0	0	0	0	0
SYBU	55638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110587864	110587864	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYBU-227	NM_001099752	exon8	c.G1263A	p.T421T	TTCCCCCGTGACC	.	109	34	129	0	.	32	26	6	0	0
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	133823330	133823330	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHF20L1-92	NM_016018	exon9	c.887delA	p.E296fs	GTGCTGAAAAAAA	.	71	43	82	0	.	0	0	0	0	0
ZFAT	57623	broad.mit.edu	37	8	135649757	135649757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZFAT-90	NM_001174157	exon3	c.G395A	p.R132Q	TGCTTCCGCAGCT	.	174	5	160	0	.	0	0	0	0	0
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	139278014	139278014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM135B-31	NM_015912	exon4	c.C229T	p.R77W	CATTCCGGTATAA	.	135	9	104	0	.	0	0	0	0	0
GPR20	2843	hgsc.bcm.edu	37	8	142367290	142367290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPR20-91	NM_005293	exon2	c.C734T	p.T245M	AGCACCGTGAGCA	.	43	29	6	0	.	0	0	0	0	0
MROH6	642475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144653155	144653155	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001100878	exon4	c.C612T	p.A204A	GAGCTCGGCTGCT	.	97	9	69	0	.	1	0	1	0	0
EPPK1	83481	bcgsc.ca	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EPPK1-25	NM_031308	exon1	c.G7132C	p.D2378H	TGGGGTCGGCCAG	.	284	35	63	0	.	3	3	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998514	144998514	+	Silent	SNP	C	C	T	rs75586449	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLEC-141	NM_201380	exon31	c.G5994A	p.A1998A	GTTCTCCGCCTCC	.	4	4	0	0	C|0.961;T|0.039	11	4	7	0	0
SPATC1	375686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145094825	145094825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPATC1-91	NM_001134374	exon2	c.C227T	p.P76L	TGCCCCCGTCCCC	.	107	26	70	0	.	0	0	0	0	0
OPLAH	26873	hgsc.bcm.edu;broad.mit.edu	37	8	145106724	145106724	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OPLAH-68	NM_017570	exon27	c.3626delG	p.G1209fs	GGCTCGCCCCCTG	.	36	10	5	0	.	0	0	0	0	0
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145620718	145620718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CPSF1-91	NM_013291	exon27	c.C3028A	p.P1010T	GCCATGGGGCATC	.	222	75	108	0	.	78	66	12	0	0
KIFC2	90990	hgsc.bcm.edu	37	8	145697835	145697835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIFC2-92	NM_145754	exon15	c.T1699C	p.W567R	ACCCACTGGGACG	.	135	82	7	0	.	70	21	49	0	0
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145736909	145736909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RECQL4-1083	NM_004260	exon22	c.G3532A	p.G1178R	CCTGCCCGTACAC	.	182	40	86	0	.	89	64	24	0	1
CBWD1	55871	ucsc.edu;bcgsc.ca	37	9	163985	163985	+	Silent	SNP	A	A	G	rs2482169		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CBWD1-469	NM_001145356	exon5	c.T483C	p.Y161Y	ATCAAGATAAATA	.	186	25	167	3	.	1	0	1	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	215057	215057	+	Missense_Mutation	SNP	T	T	C	rs481905	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C9orf66-514	NM_152569	exon1	c.A340G	p.N114D	GCAGGTTGCGGCC	.	5	5	0	0	T|0.413;C|0.587	0	0	0	0	0
KANK1	23189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	712006	712006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KANK1-517	NM_001256876	exon7	c.G1240A	p.V414M	ATCGTCGTGTACC	.	321	24	205	0	.	1	1	0	0	0
KANK1	23189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	738458	738458	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KANK1-517	NM_001256876	exon12	c.C3507T	p.S1169S	TTACAGCGTGTCC	.	274	58	206	0	.	3	2	1	0	0
VLDLR	7436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	2643347	2643347	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VLDLR-516	NM_003383	exon5	c.C636T	p.C212C	GGTATGCGACGAT	.	293	75	165	0	.	4	4	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832719	5832719	+	Missense_Mutation	SNP	G	G	C	rs13302671	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ERMP1-69	NM_024896	exon1	c.C309G	p.H103Q	CCCGCGGTGTCCA	.	8	6	0	0	G|0.981;C|0.019	0	0	0	0	0
BNC2	54796	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	16419579	16419579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BNC2-92	NM_017637	exon7	c.C2708T	p.S903L	TGCGACGAGTCCA	.	70	67	67	1	.	0	0	0	0	0
ANKRD18B	441459	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	33572324	33572324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001244752	exon16	c.G2999A	p.R1000H	TGCTGCGTTGGGC	.	266	51	238	0	.	0	0	0	0	0
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34306372	34306372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIF24-22	NM_194313	exon3	c.C691T	p.R231C	GGGGGCGTTTTCG	.	93	85	114	1	.	0	0	0	0	0
TLN1	7094	hgsc.bcm.edu;broad.mit.edu	37	9	35715145	35715145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TLN1-609	NM_006289	exon21	c.C2665T	p.R889W	GCAGCCGCTGCTG	.	91	5	25	0	.	4	4	0	0	0
TMEM8B	51754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35853771	35853771	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMEM8B-91	NM_001042590	exon13	c.C1353T	p.N451N	CATCAACGAGCAG	.	43	37	13	0	.	16	0	16	0	0
GRHPR	9380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37428531	37428531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRHPR-90	NM_012203	exon5	c.C455T	p.T152M	GACTCACGCAGAG	.	123	115	30	0	.	75	0	75	0	0
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	71861604	71861604	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TJP2-115	NM_001170414	exon19	c.2498-2A>G	.	TTCTATAGCTACA	.	94	94	80	0	.	0	0	0	0	0
TMEM2	23670	broad.mit.edu;bcgsc.ca	37	9	74305086	74305086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMEM2-92	NM_013390	exon22	c.G3773A	p.R1258H	GTCAAGCGGAATG	.	244	11	183	0	.	0	0	0	0	0
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79933230	79933230	+	Missense_Mutation	SNP	C	C	T	rs144009026		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VPS13A-161	NM_001018038	exon41	c.C5036T	p.T1679M	AAGAAACGGCTTC	.	123	113	104	0	C|1.000;T|0.000	0	0	0	0	0
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96021245	96021245	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNK2-765	NM_006648	exon11	c.G2415A	p.T805T	CATCACGCCCCTG	.	288	37	83	0	.	3	3	0	0	0
WNK2	65268	broad.mit.edu	37	9	96021293	96021293	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNK2-765	NM_006648	exon11	c.G2463A	p.P821P	CCTGCCGACCGCG	.	248	6	22	0	.	0	0	0	0	0
CCDC180	0	bcgsc.ca	37	9	100070351	100070351	+	Silent	SNP	G	G	A	rs12683119	byfrequency;alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_020893	exon2	c.G138A	p.S46S	GATGTCGTCAGTG	.	386	11	212	0	G|0.813;C|0.187	0	0	0	0	0
NCBP1	4686	hgsc.bcm.edu;bcgsc.ca	37	9	100409836	100409838	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NCBP1-90	NM_002486	exon7	c.674_676del	p.225_226del	ATCCACAAGAAGA	.	71	69	81	2	.	0	0	0	0	0
INVS	27130	broad.mit.edu	37	9	102888723	102888723	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INVS-92	NM_183245	exon3	c.C165T	p.C55C	GTATTGCGTGTTG	.	236	6	162	0	.	0	0	0	0	0
EPB41L4B	54566	bcgsc.ca	37	9	111956668	111956668	+	Silent	SNP	G	G	A	rs41278379	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EPB41L4B-92	NM_019114	exon21	c.C2055T	p.D685D	GAGGTCGTCTTCA	.	308	15	203	0	G|0.994;A|0.006	0	0	0	0	0
EPB41L4B	54566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	112042162	112042162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EPB41L4B-92	NM_019114	exon2	c.T346C	p.Y116H	AGTGGTACACAAT	.	134	32	94	0	.	2	1	1	0	0
C9orf43	257169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116176059	116176059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C9orf43-90	NM_152786	exon3	c.G172A	p.V58M	CTCACCGTGGTAG	.	164	155	119	0	.	0	0	0	0	0
RGS3	5998	hgsc.bcm.edu;broad.mit.edu	37	9	116269824	116269824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RGS3-227	NM_144488	exon14	c.G1343A	p.R448H	CCAAGCGCGGGGG	.	170	25	8	0	.	2	2	0	0	0
DFNB31	25861	hgsc.bcm.edu	37	9	117166245	117166245	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DFNB31-95	NM_015404	exon10	c.G2349A	p.V783V	GGTGGACACCGAC	.	79	4	31	0	.	0	0	0	0	0
TNC	3371	bcgsc.ca	37	9	117848659	117848659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TNC-517	NM_002160	exon3	c.G1351A	p.E451K	TGCCCTCGACACA	.	236	45	156	3	.	0	0	0	0	0
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125861009	125861009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RABGAP1-500	NM_012197	exon23	c.C2749T	p.R917C	ATGTGCCGTCGGG	.	97	30	70	0	.	21	18	3	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126135831	126135831	+	Silent	SNP	T	T	C	rs7848449	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRB2-91	NM_173689	exon10	c.T3021C	p.A1007A	GCTGGCTGAGAAC	.	7	6	0	0	T|0.886;C|0.114	0	0	0	0	0
FAM129B	64855	hgsc.bcm.edu	37	9	130269566	130269571	+	In_Frame_Del	DEL	CCGCCC	CCGCCC	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CCGCCC	CCGCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM129B-68	NM_022833	exon14	c.1794_1799del	p.598_600del	GGGCTGCCGCCCC	.	123	101	2	0	.	0	0	0	0	0
FAM129B	64855	bcgsc.ca	37	9	130289573	130289573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM129B-68	NM_022833	exon3	c.C215G	p.S72W	TTCCCCGAGAAGA	.	147	5	83	0	.	7	7	0	0	0
DNM1	1759	bcgsc.ca	37	9	130984508	130984508	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNM1-228	.	.	.	.	ACTGCCGGGGCTG	.	382	25	245	3	.	2	2	0	0	0
FIBCD1	84929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133799257	133799257	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FIBCD1-90	NM_001145106	exon5	c.C723T	p.P241P	GTCTCGGGGCCGG	.	331	308	34	0	.	0	0	0	0	0
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	GCT	-	rs34222232	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SNAPC4-90	NM_003086	exon15	c.1624_1626del	p.542_542del	CTCCTCGCTGCTG	.	130	8	7	0	.	0	0	0	0	0
SDCCAG3	10807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139299638	139299638	+	Missense_Mutation	SNP	G	G	A	rs200655256		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SDCCAG3-90	NM_001039707	exon7	c.C910T	p.R304W	ACTTCCGCTCAAG	.	118	112	80	0	G|0.999;A|0.000	25	0	25	0	0
NOTCH1	4851	hgsc.bcm.edu	37	9	139400219	139400219	+	Missense_Mutation	SNP	G	G	A	rs61751542	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NOTCH1-5459	NM_017617	exon25	c.C4129T	p.P1377S	TGAAGGGGCCCAG	.	10	9	2	0	G|0.990;A|0.010	2	0	2	0	0
LCN10	414332	broad.mit.edu	37	9	139634004	139634004	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LCN10-67	NM_001001712	exon6	c.G576A	p.A192A	ACGGGACGCTGTG	.	314	7	139	1	.	0	0	0	0	0
RABL6	55684	hgsc.bcm.edu;broad.mit.edu	37	9	139734633	139734635	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001173988	exon14	c.1961_1963del	p.654_655del	CTAAGGAGAAGAA	.	254	20	134	0	.	0	0	0	0	0
MAMDC4	158056	hgsc.bcm.edu;bcgsc.ca	37	9	139748110	139748110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAMDC4-156	NM_206920	exon4	c.G442A	p.A148T	TACCACGCGGCCT	.	136	131	7	0	.	3	0	3	0	0
PNPLA7	375775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140373513	140373513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PNPLA7-91	NM_001098537	exon24	c.A2758G	p.K920E	CCAGCTTGGGCAG	.	308	49	47	0	.	0	0	0	0	0
ASMTL	8623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	1522202	1522202	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ASMTL-62	NM_004192	exon13	c.1826delG	p.G609fs	AGGACACCCCCCA	.	292	125	176	0	.	0	0	0	0	0
DHRSX	207063	bcgsc.ca	37	X	2184933	2184933	+	Silent	SNP	G	G	A	rs200644172		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_145177	exon5	c.C444T	p.F148F	CAGGCCGAAATGT	.	1480	658	993	5	G|0.999;A|0.001	34	20	14	0	0
ARSD	414	broad.mit.edu	37	X	2825437	2825437	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARSD-130	NM_001669	exon10	c.C1657T	p.Q553X	GGGTCTGCCGATG	.	224	9	119	1	.	1	1	0	0	0
TBL1X	6907	ucsc.edu;bcgsc.ca	37	X	9673126	9673126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TBL1X-131	NM_001139466	exon13	c.G1208A	p.R403H	GTGACCGCCCAGT	.	426	388	306	4	.	2	0	2	0	0
USP9X	8239	hgsc.bcm.edu;broad.mit.edu	37	X	40982957	40982957	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	USP9X-563	NM_001039591	exon2	c.76delC	p.P26fs	TCTCAGCCCCCCC	.	242	13	184	0	.	0	0	0	0	0
CCDC120	90060	hgsc.bcm.edu	37	X	48921959	48921959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC120-131	NM_001163321	exon6	c.C488T	p.A163V	CGGCGGCCGCCCG	.	21	18	2	0	.	0	0	0	0	0
CCDC120	90060	hgsc.bcm.edu	37	X	48925015	48925015	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC120-131	NM_001163321	exon10	c.C1365T	p.A455A	CCGGGCCGCCCGG	.	21	21	0	0	.	3	0	3	0	0
AKAP4	8852	bcgsc.ca	37	X	49955729	49955729	+	Silent	SNP	C	C	T	rs78668179	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AKAP4-540	NM_003886	exon6	c.G2439A	p.E813E	CCCCTTCTCTGCT	.	117	6	81	0	C|0.961;T|0.039	0	0	0	0	0
UBQLN2	29978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	56591874	56591874	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UBQLN2-131	NM_013444	exon1	c.1568delC	p.A523fs	CTGCAGCCCCCCC	.	57	48	21	0	.	0	0	0	0	0
STARD8	9754	broad.mit.edu	37	X	67941902	67941902	+	Missense_Mutation	SNP	C	C	T	rs61735034	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	STARD8-196	NM_001142503	exon11	c.C2473T	p.R825C	AGCAAACGCAGCC	.	169	7	87	2	C|0.998;T|0.002	0	0	0	0	0
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69902635	69902635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TEX11-178	NM_001003811	exon15	c.C1090T	p.R364C	TAAAACGTTCATG	.	111	46	88	0	.	0	0	0	0	0
SLC7A3	84889	broad.mit.edu;bcgsc.ca	37	X	70148709	70148709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC7A3-132	NM_032803	exon3	c.G514A	p.V172M	GCAACACGAGGCC	.	131	6	74	0	.	0	0	0	0	0
KIAA2022	340533	broad.mit.edu;bcgsc.ca	37	X	73960665	73960665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIAA2022-183	NM_001008537	exon3	c.C3727T	p.R1243C	CCCCACGGCCAAT	.	239	11	176	0	.	0	0	0	0	0
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	73961524	73961524	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIAA2022-183	NM_001008537	exon3	c.C2868T	p.T956T	GAGTTGGGTATCT	.	137	13	92	0	.	0	0	0	0	0
PRPS1	5631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	106890920	106890920	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRPS1-289	NM_002764	exon6	c.C789T	p.N263N	CAACAACGCATGC	.	216	103	167	0	.	30	14	16	0	0
HTR2C	3358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114141204	114141204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HTR2C-133	NM_001256761	exon6	c.C508T	p.R170C	GGTGTTCGTGAAC	.	251	90	186	0	.	0	0	0	0	0
AGTR2	186	hgsc.bcm.edu;bcgsc.ca	37	X	115303928	115303928	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AGTR2-565	NM_000686	exon3	c.395delT	p.I132fs	CAAGCATTTTTTT	.	72	59	52	0	.	0	0	0	0	0
NKAP	79576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	119059239	119059239	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NKAP-132	NM_024528	exon9	c.1192delC	p.L398fs	TGGCCAGAATCTT	.	87	82	60	0	.	0	0	0	0	0
ATP1B4	23439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	119512613	119512613	+	Silent	SNP	C	C	T	rs148650396		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP1B4-131	NM_001142447	exon7	c.C897T	p.Y299Y	TTACTACGGCAAA	.	95	11	59	0	C|1.000;T|0.000	0	0	0	0	0
BCORL1	63035	hgsc.bcm.edu;bcgsc.ca	37	X	129149050	129149050	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BCORL1-294	NM_021946	exon3	c.2302delA	p.K768fs	TGTGGCAAAAAGG	.	149	133	105	1	.	0	0	0	0	0
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135323411	135323411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAP7D3-110	NM_024597	exon5	c.G443A	p.R148H	AAAGTACGATAAA	.	105	41	72	0	.	0	0	0	0	0
MAGEA12	4111	broad.mit.edu;bcgsc.ca	37	X	151900357	151900357	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAGEA12-131	NM_005367	exon2	c.T444C	p.P148P	GATCACAGGAAAG	.	512	14	353	0	.	0	0	0	0	0
MAGEA12	4111	broad.mit.edu;bcgsc.ca	37	X	151900373	151900373	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAGEA12-131	NM_005367	exon2	c.T428G	p.F143C	TCCTGGAAATTTC	.	481	17	351	0	.	0	0	0	0	0
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152807870	152807870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP2B3-109	NM_001001344	exon4	c.C754T	p.R252C	CACGTGCGCAAGT	.	208	84	38	0	.	11	7	4	0	0
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	153042767	153042767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLXNB3-130	NM_001163257	exon31	c.C5101T	p.R1701W	AGCCTGCGGGAGC	.	198	85	15	0	.	97	54	43	0	0
PDZD4	57595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153073942	153073942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDZD4-193	NM_032512	exon2	c.C169T	p.R57W	CCCCCCGGAGGCG	.	218	112	53	0	.	6	4	2	0	0
FLNA	2316	bcgsc.ca	37	X	153595114	153595114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FLNA-599	NM_001456	exon6	c.G973A	p.G325R	GGTGTCCGGCCGG	.	126	117	43	2	.	4	0	4	0	0
PRKAA2	5563	broad.mit.edu;bcgsc.ca	37	1	57173340	57173341	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRKAA2-885	NM_006252	exon9	c.1613_1614insT	p.D538fs	CCATGGATTTTTT	.	88	9	124	0	.	0	0	0	0	0
HIP1R	9026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123339931	123339932	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HIP1R-91	NM_003959	exon11	c.972_973insC	p.G324fs	CACAGGGCCCCCC	.	171	60	40	0	.	0	0	0	0	0
EFS	10278	broad.mit.edu	37	14	23826637	23826638	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EFS-153	NM_005864	exon6	c.1484_1485insG	p.A495fs	GAGGCTGCCAGCC	.	389	8	48	0	.	0	0	0	0	0
TMC5	79838	broad.mit.edu	37	16	19452014	19452015	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMC5-91	NM_001105249	exon3	c.654_655insT	p.P218fs	TCCACCCTTTTTT	.	233	9	177	0	.	0	0	0	0	0
KRTAP4-3	85290	broad.mit.edu	37	17	39324139	39324140	+	In_Frame_Ins	INS	-	-	GCAGCAGGTGGTCAG	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRTAP4-3-22	NM_033187	exon1	c.286_287insCTGACCACCTGCTGC	p.R96delinsLTTCCR	TGGTCCTGCAGCA	.	285	10	196	0	.	0	0	0	0	0
FLT3LG	2323	hgsc.bcm.edu	37	19	49982165	49982166	+	Splice_Site	INS	-	-	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FLT3LG-115	NM_001204502	exon6	c.343-1->C	.	CTCCCAGCCCCCC	.	98	43	25	0	.	0	0	0	0	0
CACNG6	59285	broad.mit.edu	37	19	54496174	54496175	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNG6-92	NM_031897	exon1	c.43_44insT	p.R15fs	CGGCGGCGGGGGG	.	11	5	5	0	.	0	0	0	0	0
FILIP1L	11259	hgsc.bcm.edu;bcgsc.ca	37	3	99567122	99567123	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FILIP1L-45	NM_001042459	exon5	c.3398_3399insTA	p.N1133fs	GGTCAGTTATATA	.	165	143	260	2	.	0	0	0	0	0
GCSAM	257144	broad.mit.edu;bcgsc.ca	37	3	111845872	111845873	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001190259	exon4	c.158_159insA	p.I53fs	ATGAGTATTTTTT	.	24	7	30	0	.	0	0	0	0	0
AMTN	401138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	71394929	71394930	+	Splice_Site	INS	-	-	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AMTN-153	NM_212557	exon7	c.357+2->A	.	AATTGGTAAAAAA	.	194	63	180	0	.	0	0	0	0	0
LARP7	51574	hgsc.bcm.edu	37	4	113578482	113578483	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LARP7-93	NM_001267039	exon15	c.1769_1770insA	p.X590delinsX	ATGATTGAAAAAA	.	215	48	160	0	.	0	0	0	0	0
RAD50	10111	hgsc.bcm.edu	37	5	131931451	131931452	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RAD50-229	NM_005732	exon13	c.2156_2157insA	p.L719fs	CAGAGCTAAAAAA	.	67	16	41	0	.	0	0	0	0	0
TBP	6908	broad.mit.edu	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	-	CAG	rs201732168		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TBP-91	NM_003194	exon3	c.189_190insCAG	p.Q63delinsQQ	ACAACAACAGCAG	.	81	48	47	0	-|0.138;CAG|0.862	0	0	0	0	0
BOP1	23246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	145512978	145512979	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BOP1-90	NM_015201	exon2	c.107_108insC	p.L36fs	CAGAGGAGGGGGG	.	118	31	94	0	.	0	0	0	0	0
PRRC2B	84726	broad.mit.edu	37	9	134351684	134351685	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRRC2B-24	NM_013318	exon15	c.4168_4169insG	p.R1390fs	GAGCGGCGGGAAG	.	159	16	13	0	.	0	0	0	0	0
CAMSAP1	157922	hgsc.bcm.edu;broad.mit.edu	37	9	138719314	138719315	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CAMSAP1-92	NM_015447	exon8	c.1162_1163insC	p.V388fs	GCTGCACGGGGGG	.	178	19	38	0	.	0	0	0	0	0
CAPN6	827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	110496401	110496402	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CAPN6-195	NM_014289	exon4	c.341_342insA	p.T114fs	TTTTCTGTTTTTT	.	54	49	63	0	.	0	0	0	0	0
MECP2	4204	broad.mit.edu	37	X	153295915	153295916	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MECP2-226	NM_001110792	exon3	c.1400_1401insG	p.E467fs	TCTCCCTCCCCTC	.	152	11	76	0	.	0	0	0	0	0
CLTB	1212	hgsc.bcm.edu;mdanderson.org	37	5	175843341	175843342	+	Missense_Mutation	DNP	GA	GA	CG	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CLTB-90	NM_001834	exon1	c.T23C	p.F8S	GACGAGAAGAAGC	.	192	0	10	0	.	0	0	0	0	0
