Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HES3	390992	hgsc.bcm.edu	37	1	6305292	6305292	+	Missense_Mutation	SNP	C	C	A	rs61760836		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	HES3-514	NM_001024598	exon4	c.C286A	p.P96T	CTGGTGCCCGAGA	.	5	5	0	0	C|0.430;A|0.570	0	0	0	0	0
HES3	390992	hgsc.bcm.edu	37	1	6305303	6305303	+	Silent	SNP	C	C	A	rs61760837		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	HES3-514	NM_001024598	exon4	c.C297A	p.A99A	GAGCGCCGCCGGC	.	5	5	0	0	C|0.438;A|0.562	0	0	0	0	0
HES3	390992	hgsc.bcm.edu	37	1	6305321	6305321	+	Silent	SNP	C	C	T	rs180888799		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	HES3-514	NM_001024598	exon4	c.C315T	p.D105D	CATGGACAGCGCC	.	5	5	0	0	C|0.995;T|0.005	0	0	0	0	0
TAS1R2	80834	broad.mit.edu	37	1	19181387	19181387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TAS1R2-93	NM_152232	exon3	c.G577T	p.A193S	CCATGGCCTCGAT	.	73	6	54	0	.	0	0	0	0	0
FAM46B	115572	hgsc.bcm.edu	37	1	27339103	27339103	+	Missense_Mutation	SNP	G	G	T	rs4970471		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FAM46B-90	NM_052943	exon1	c.C59A	p.T20K	GCAGCCGTCCCCA	.	5	5	0	0	G|0.670;T|0.330	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	15	14	0	0	G|0.061;T|0.939	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	26	25	4	0	T|0.861;C|0.139	2	1	1	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	8	8	0	0	T|0.073;G|0.921	13	0	13	0	0
ITLN2	142683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160922445	160922445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ITLN2-91	NM_080878	exon3	c.G158T	p.C53F	TCTTTGCAGCTTC	.	111	41	78	0	.	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	39	23	1	0	C|0.242;T|0.758	0	0	0	0	0
TATDN3	128387	broad.mit.edu	37	1	212988479	212988479	+	Missense_Mutation	SNP	G	G	A	rs147372063	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TATDN3-22	NM_001146171	exon10	c.G827A	p.R276Q	AGCTCCGACACTT	.	78	4	64	2	G|0.999;A|0.001	46	46	0	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	KCTD3-93	NM_016121	exon1	c.T25G	p.F9V	GGCAGCTTCCCCG	.	18	18	0	0	T|0.721;G|0.279	6	0	6	0	0
KCTD3	51133	ucsc.edu;bcgsc.ca	37	1	215781465	215781465	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	KCTD3-93	NM_016121	exon14	c.C1416A	p.S472S	ACTATCCCTGGAG	.	181	77	162	2	.	97	64	33	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	61	61	0	0	C|0.643;T|0.357	0	0	0	0	0
FAM25B	100132929	broad.mit.edu	37	10	49207753	49207753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001137556	exon1	c.G47T	p.R16L	TCGGTGCGGTGGG	.	327	33	246	1	.	0	0	0	0	0
KCNMA1	3778	hgsc.bcm.edu	37	10	78729786	78729786	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	KCNMA1-93	NM_001161352	exon20	c.2306delA	p.K769fs	CGTTGCTTTTTTT	.	194	12	181	5	.	0	0	0	0	0
FAM178A	55719	hgsc.bcm.edu;bcgsc.ca	37	10	102676854	102676854	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001136123	exon3	c.712delT	p.L238fs	TTCCAGTTGTCAC	.	171	54	235	1	.	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	18	18	0	0	A|0.009;G|0.991	9	0	9	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219066	134219066	+	Silent	SNP	G	G	C	rs76595411	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	PWWP2B-90	NM_001098637	exon2	c.G1062C	p.V354V	GCTGGTGGGGGAG	.	22	5	3	0	G|0.955;C|0.045	32	25	7	0	0
MUC2	4583	broad.mit.edu	37	11	1093069	1093069	+	Missense_Mutation	SNP	A	A	G	rs201496058		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MUC2-90	NM_002457	exon30	c.A4888G	p.T1630A	ACCCCAACAGCCA	.	112	15	78	2	.	0	0	0	0	0
WEE1	7465	hgsc.bcm.edu	37	11	9595768	9595768	+	Silent	SNP	C	C	T	rs117347074	byfrequency;by1000genomes	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	WEE1-1404	NM_003390	exon1	c.C288T	p.P96P	GCTGCCCGGCGCC	.	8	6	0	0	C|0.953;T|0.047	0	0	0	0	0
RAG1	5896	broad.mit.edu;bcgsc.ca	37	11	36596586	36596586	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RAG1-230	NM_000448	exon2	c.T1732C	p.L578L	GACATCTTGGAAG	.	238	8	194	0	.	0	0	0	0	0
FNBP4	23360	hgsc.bcm.edu	37	11	47788664	47788669	+	In_Frame_Del	DEL	GGTGGT	GGTGGT	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	GGTGGT	GGTGGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FNBP4-91	NM_015308	exon1	c.172_177del	p.58_59del	CACCGCGGTGGTG	.	25	11	2	0	.	0	0	0	0	0
LRRC10B	390205	hgsc.bcm.edu	37	11	61277031	61277031	+	Silent	SNP	C	C	T	rs1139011	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001145077	exon1	c.C561T	p.L187L	CATCCTCGACCTC	.	36	16	0	0	C|0.816;T|0.184	0	0	0	0	0
SAC3D1	29901	hgsc.bcm.edu	37	11	64809090	64809090	+	Missense_Mutation	SNP	T	T	G	rs12271134		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SAC3D1-90	NM_013299	exon1	c.T326G	p.L109R	CTGTGCTCCTGGA	.	4	4	0	0	T|0.005;G|0.995	4	0	4	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	14	14	0	0	G|0.005;C|0.995	299	1	298	0	0
MAML2	84441	ucsc.edu	37	11	95825383	95825383	+	Silent	SNP	C	C	T	rs113349418		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MAML2-850	NM_032427	exon2	c.G1812A	p.Q604Q	CTGCTGCTGCTGC	.	186	37	159	0	C|0.500;T|0.500	62	43	19	0	0
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MAML2-850	NM_032427	exon2	c.G1788A	p.Q596Q	CTGCTGCTGCTGC	.	220	24	180	0	C|0.250;T|0.750	121	109	12	0	0
PRDM10	56980	broad.mit.edu;bcgsc.ca	37	11	129788483	129788483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	PRDM10-91	NM_020228	exon15	c.C2177T	p.T726M	TTGAACGTGAAGC	.	169	8	120	0	.	0	0	0	0	0
GLB1L2	89944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134240909	134240909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	GLB1L2-25	NM_138342	exon13	c.A1223G	p.K408R	CAATCAAGTCTGA	.	98	45	63	0	.	0	0	0	0	0
ATN1	1822	broad.mit.edu	37	12	7047103	7047103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ATN1-139	NM_001007026	exon6	c.C2390A	p.A797D	AGCGGGCCGACCT	.	232	12	29	1	.	138	135	1	2	0
FAM186A	121006	broad.mit.edu	37	12	50747102	50747102	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FAM186A-68	NM_001145475	exon4	c.T3513C	p.L1171L	AGGGGTAAGAGGG	.	124	7	110	1	.	0	0	0	0	0
KRT4	3851	bcgsc.ca	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	KRT4-96	NM_002272	exon1	c.T240C	p.F80F	AGTGCCAAAGCCT	.	101	9	47	0	A|1.000;|0.000	0	0	0	0	0
KRT4	3851	bcgsc.ca	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	KRT4-96	NM_002272	exon1	c.C237T	p.G79G	GCCAAAGCCTCCA	.	102	8	49	0	.	0	0	0	0	0
ITGA7	3679	broad.mit.edu	37	12	56094084	56094084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ITGA7-229	NM_001144996	exon5	c.A764C	p.D255A	CGGGGGTCCTGCT	.	71	14	38	7	.	6	6	0	0	0
MARCH9	92979	hgsc.bcm.edu	37	12	58149446	58149446	+	Silent	SNP	C	C	T	rs1689582		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MARCH9-492	NM_138396	exon1	c.C135T	p.G45G	CGCTGGCTGCTCC	.	4	4	0	0	T|0.004;G|0.064	0	0	0	0	0
DUSP6	1848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	89744754	89744754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	DUSP6-846	NM_001946	exon2	c.A449G	p.N150S	TCTAGATTGGTCT	.	45	24	33	0	.	17	13	4	0	0
LHX5	64211	hgsc.bcm.edu	37	12	113901232	113901232	+	Silent	SNP	T	T	C	rs202131487		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	LHX5-90	NM_022363	exon5	c.A972G	p.G324G	CAGCGCTCCCAGC	.	37	18	2	0	.	0	0	0	0	0
C12orf49	79794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117160973	117160973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	C12orf49-91	NM_024738	exon2	c.C167T	p.P56L	GGGATGGGCTGAT	.	250	47	204	0	.	9	7	2	0	0
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120616700	120616700	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	GCN1L1-94	NM_006836	exon6	c.C480T	p.H160H	CACGGCGTGCTTG	.	75	28	67	0	.	5	2	3	0	0
FBRSL1	57666	hgsc.bcm.edu	37	12	133159733	133159733	+	Missense_Mutation	SNP	C	C	T	rs11550079		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FBRSL1-70	NM_001142641	exon17	c.C2507T	p.A836V	AGGAGGCCGCCAA	.	11	10	0	0	C|0.470;T|0.530	8	5	2	0	1
EFHA1	221154	hgsc.bcm.edu	37	13	22178258	22178258	+	Silent	SNP	C	C	T	rs9509812	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	EFHA1-90	NM_152726	exon1	c.G30A	p.R10R	CGCCACCCGCGCG	.	15	11	2	0	C|0.873;T|0.127	7	0	7	0	0
RASL11A	387496	broad.mit.edu;bcgsc.ca	37	13	27847550	27847550	+	Silent	SNP	C	C	G	rs148298639	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RASL11A-522	NM_206827	exon4	c.C648G	p.R216R	GCCCCGCTCTCCC	.	149	5	217	1	C|0.992;G|0.008	4	4	0	0	0
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	48934194	48934194	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RB1-3784	NM_000321	exon7	c.C649T	p.Q217X	TCATTTCAGTTAA	.	32	24	85	0	.	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	49	9	16	0	.	11	11	0	0	0
ACIN1	22985	ucsc.edu	37	14	23548787	23548787	+	Missense_Mutation	SNP	C	C	T	rs61741619	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ACIN1-156	NM_001164814	exon6	c.G1931A	p.R644H	CGAGAACGTGAAC	.	236	45	197	0	C|0.985;T|0.015	0	0	0	0	0
ARHGAP5	394	bcgsc.ca	37	14	32561296	32561296	+	Missense_Mutation	SNP	T	T	C	rs200111638		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ARHGAP5-94	NM_001173	exon2	c.T1421C	p.V474A	AAGAGGTATATGG	.	190	7	170	2	T|0.999;C|0.001	2	2	0	0	0
OTX2	5015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57268974	57268974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	OTX2-205	NM_001270525	exon3	c.C373G	p.P125A	GAGCTGGAGATGT	.	56	22	42	0	.	0	0	0	0	0
PLEKHG3	26030	hgsc.bcm.edu	37	14	65210339	65210339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	PLEKHG3-91	NM_015549	exon15	c.C3410T	p.S1137F	AGGGTTCCAGGGA	.	65	4	57	0	.	7	7	0	0	0
ACOT4	122970	hgsc.bcm.edu	37	14	74058832	74058832	+	Missense_Mutation	SNP	C	C	T	rs3742819		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ACOT4-90	NM_152331	exon1	c.C169T	p.R57C	GACGCCCGCGGCG	.	20	18	0	0	T|0.002;G|0.599	1	0	1	0	0
ASB2	51676	broad.mit.edu	37	14	94405527	94405527	+	Missense_Mutation	SNP	T	T	G	rs199833352		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ASB2-228	NM_001202429	exon8	c.A1544C	p.H515P	GGCGGGTGCGGGC	.	178	42	22	0	.	1	1	0	0	0
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	95571420	95571420	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	DICER1-961	NM_030621	exon21	c.3257delC	p.P1086fs	TCCGCAGGAAGTG	.	140	64	115	0	.	0	0	0	0	0
CEP170B	283638	broad.mit.edu	37	14	105352885	105352890	+	In_Frame_Del	DEL	GCAGGA	GCAGGA	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001112726	exon12	c.2309_2314del	p.770_772del	GCAGACGCAGGAG	.	35	13	5	0	.	0	0	0	0	0
AHNAK2	113146	bcgsc.ca	37	14	105414629	105414629	+	Missense_Mutation	SNP	G	G	A	rs72702027	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	AHNAK2-47	NM_138420	exon7	c.C7159T	p.P2387S	CCTCTGGGAGTTT	.	191	6	132	0	G|0.478;A|0.522	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	13	6	0	0	A|0.226;C|0.774	5	5	0	0	0
MTFMT	123263	hgsc.bcm.edu	37	15	65321938	65321938	+	Missense_Mutation	SNP	A	A	G	rs2946655	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MTFMT-24	NM_139242	exon1	c.T14C	p.V5A	CGCCGCACCAACA	.	22	8	0	0	A|0.942;G|0.058	19	5	14	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369947	65369947	+	Missense_Mutation	SNP	G	G	A	rs146917406		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001101362	exon1	c.G794A	p.G265D	TCGGCGGCGAATT	.	28	16	4	0	G|0.992;A|0.008	0	0	0	0	0
RPS2	6187	hgsc.bcm.edu	37	16	2014528	2014528	+	Silent	SNP	G	G	A	rs17135712	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RPS2-90	NM_002952	exon2	c.C99T	p.I33I	GCCCCGGATGCCA	.	22	8	0	0	G|0.933;A|0.067	230	75	155	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	6	6	0	0	T|0.007;C|0.993	8	0	8	0	0
TSC2	7249	bcgsc.ca	37	16	2138269	2138269	+	Silent	SNP	T	T	C	rs1748	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TSC2-1908	NM_000548	exon41	c.T5202C	p.D1734D	CACCGATATCTAC	.	121	5	56	0	T|0.505;G|0.066;C|0.239;A|0.190	65	65	0	0	0
RSL1D1	26156	bcgsc.ca	37	16	11940390	11940390	+	Silent	SNP	T	T	C	rs8052900	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RSL1D1-90	NM_015659	exon5	c.A603G	p.T201T	TAAGACTGTTCCA	.	112	6	119	0	T|0.271;C|0.729	131	130	1	0	0
GP2	2813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20335574	20335574	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	GP2-94	NM_001502	exon3	c.T99C	p.Y33Y	GTTTCCATAACCT	.	208	82	149	0	.	0	0	0	0	0
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24580870	24580870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RBBP6-230	NM_006910	exon17	c.A2859C	p.L953F	AGAGTTATTAGAG	.	78	35	60	0	.	17	6	11	0	0
INO80E	283899	broad.mit.edu	37	16	30007665	30007665	+	Frame_Shift_Del	DEL	A	A	-	rs34220380		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	INO80E-91	NM_173618	exon1	c.34delA	p.K12fs	GACTACAAAAAAA	.	310	8	174	0	.	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	5	5	0	0	T|0.035;G|0.004	1	0	1	0	0
CLEC18A	348174	ucsc.edu	37	16	69988260	69988260	+	Silent	SNP	G	G	A	rs74456876		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CLEC18A-68	NM_001271197	exon4	c.G240A	p.Q80Q	GGCCCAGCTGGCT	.	220	61	112	21	G|0.500;A|0.500	0	0	0	0	0
MARVELD3	91862	ucsc.edu;bcgsc.ca	37	16	71674801	71674801	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MARVELD3-91	NM_001017967	exon3	c.G1104A	p.V368V	TCTCGTGATCATG	.	361	157	259	2	.	1	0	1	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	20	20	0	0	G|0.292;A|0.708	1	0	1	0	0
IRF8	3394	hgsc.bcm.edu	37	16	85952145	85952145	+	Missense_Mutation	SNP	T	T	C	rs142267779	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	IRF8-154	NM_002163	exon7	c.T724C	p.Y242H	AAGCTGTATGGGC	.	65	21	0	0	T|0.998;C|0.002	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	20	17	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	19	0	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	17	17	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	17	17	0	0	.	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	21	18	2	0	T|0.657;C|0.343	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	10	10	0	0	C|0.015;A|0.985	1	0	1	0	0
TNFSF12	8742	hgsc.bcm.edu	37	17	7452542	7452542	+	Silent	SNP	C	C	T	rs77711855		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TNFSF12-44	NM_003809	exon1	c.C72T	p.L24L	CCCGCTCGCGCTG	.	7	7	0	0	C|0.883;T|0.117	10	0	10	0	0
RNF222	643904	hgsc.bcm.edu	37	17	8296383	8296383	+	Missense_Mutation	SNP	C	C	T	rs12601362	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RNF222-68	NM_001146684	exon3	c.G397A	p.A133T	GCTGGGCGCTCTG	.	12	10	0	0	C|0.808;T|0.192	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_015077	exon1	c.G68C	p.R23P	CACGGCGGGGCGC	.	7	7	0	0	G|0.001;C|0.999	1	0	1	0	0
MYO18A	399687	broad.mit.edu	37	17	27437604	27437604	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MYO18A-22	NM_078471	exon18	c.C2937A	p.G979G	GGCACTGCCTGCG	.	43	8	11	0	.	3	3	0	0	0
TOP2A	7153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38561085	38561085	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TOP2A-655	NM_001067	exon17	c.C2004T	p.F668F	CTCCATGAAATTA	.	98	38	81	0	.	6	6	0	0	0
IGFBP4	3487	hgsc.bcm.edu	37	17	38600092	38600092	+	Silent	SNP	G	G	A	rs598892	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	IGFBP4-522	NM_001552	exon1	c.G105A	p.L35L	GAAGCTGGCGCGC	.	14	14	0	0	G|0.645;A|0.355	1	0	1	0	0
GOSR2	9570	broad.mit.edu;bcgsc.ca	37	17	45012394	45012394	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	GOSR2-92	NM_004287	exon5	c.337-1G>A	.	TTCACAGGACTCT	.	163	78	138	1	.	0	0	0	0	0
HID1	283987	bcgsc.ca	37	17	72949146	72949146	+	Silent	SNP	C	C	T	rs2307010	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_030630	exon16	c.G2007A	p.P669P	GGTGGACGGTCGC	.	108	5	142	0	C|0.809;T|0.191	1	1	0	0	0
C1QTNF1	114897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77043879	77043879	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	C1QTNF1-91	NM_030968	exon4	c.C555T	p.F185F	CAAGTTCTACTGC	.	120	94	180	1	.	36	1	35	0	0
ROCK1	6093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	18629131	18629131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ROCK1-1026	NM_005406	exon4	c.G336A	p.M112I	CTTTATCATTTCA	.	58	20	63	0	.	2	2	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	9	9	0	0	C|0.390;A|0.610	0	0	0	0	0
EFNA2	1943	hgsc.bcm.edu	37	19	1295717	1295717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	EFNA2-90	NM_001405	exon2	c.G314A	p.R105H	ACCACCGCCAGCG	.	95	6	10	0	.	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	22	8	0	0	T|0.403;C|0.597	11	11	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	KANK3-90	NM_198471	exon3	c.T1083C	p.S361S	CTCCAGACTGGCG	.	16	16	0	0	A|0.411;G|0.589	1	0	1	0	0
ZNF558	148156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8922403	8922403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ZNF558-90	NM_144693	exon6	c.A763G	p.K255E	TCCTCTTGTGGCT	.	151	65	135	0	.	7	6	1	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	40	19	1	0	C|0.671;A|0.329	0	0	0	0	0
CPAMD8	27151	bcgsc.ca	37	19	17111272	17111272	+	Silent	SNP	T	T	C	rs61740405	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CPAMD8-141	NM_015692	exon10	c.A960G	p.V320V	GTACCCTACACCA	.	86	5	56	0	T|0.986;C|0.014	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	6	6	0	0	T|0.072;C|0.928	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	8	8	0	0	A|0.065;C|0.935	0	0	0	0	0
LSM14A	26065	broad.mit.edu	37	19	34710315	34710315	+	Silent	SNP	T	T	G	rs201741862		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	LSM14A-91	NM_001114093	exon7	c.T801G	p.A267A	TTCAGCTCCAAGG	.	72	3	62	0	T|0.999;G|0.001	18	17	1	0	0
FAM98C	147965	hgsc.bcm.edu	37	19	38894307	38894307	+	Missense_Mutation	SNP	G	G	A	rs150024474		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FAM98C-91	NM_174905	exon3	c.G322A	p.E108K	CTTCGGGAACCCG	.	18	13	0	0	G|0.968;A|0.032	19	10	9	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	34	20	0	0	G|0.349;A|0.651	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	25	8	3	0	T|0.545;C|0.455	7	6	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	40993664	40993664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SPTBN4-94	NM_020971	exon3	c.G230A	p.R77H	TCGCCCGCGTGGG	.	75	5	57	0	.	0	0	0	0	0
CYP2A6	1548	bcgsc.ca	37	19	41355820	41355820	+	Silent	SNP	A	A	G	rs199702575		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CYP2A6-92	NM_000762	exon2	c.T246C	p.C82C	ATGTCCACACAGC	.	397	18	282	10	A|0.999;G|0.001	0	0	0	0	0
CYP2A6	1548	bcgsc.ca	37	19	41355828	41355828	+	Missense_Mutation	SNP	C	C	T	rs77233796		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CYP2A6-92	NM_000762	exon2	c.G238A	p.V80M	ACAGCACCACGAC	.	383	20	278	11	.	0	0	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	27	12	0	0	C|0.804;T|0.196	6	2	4	0	0
NTF4	4909	ucsc.edu	37	19	49565034	49565034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	NTF4-68	NM_006179	exon2	c.C221T	p.P74L	TTGGCCGGGGCAC	.	43	5	17	0	.	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	11	11	0	0	T|0.228;C|0.772	0	0	0	0	0
ZNF880	400713	broad.mit.edu	37	19	52888210	52888210	+	Silent	SNP	T	T	C	rs56151179	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001145434	exon4	c.T1377C	p.T459T	TCATACTGGAGAG	.	97	4	86	0	T|0.632;C|0.368	1	0	1	0	0
ZNF880	400713	broad.mit.edu	37	19	52888245	52888245	+	Missense_Mutation	SNP	A	A	G	rs55748277	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001145434	exon4	c.A1412G	p.K471R	GTGGCAAGGACTT	.	136	4	111	1	A|0.631;G|0.369	0	0	0	0	0
UBE2S	27338	hgsc.bcm.edu	37	19	55912946	55912946	+	Missense_Mutation	SNP	T	T	G	rs61748180	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	UBE2S-226	NM_014501	exon4	c.A527C	p.E176A	GAAGCTTCAGTGC	.	30	16	2	0	T|0.951;G|0.049	135	59	76	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001144989	exon3	c.C1010T	p.A337V	AAGCTAGCATATT	.	267	105	114	1	.	1	1	0	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001144989	exon3	c.G996C	p.S332S	GCTAAACGATTTC	.	238	73	101	1	.	1	1	0	0	0
ZNF814	730051	bcgsc.ca	37	19	58385873	58385873	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001144989	exon3	c.A885G	p.K295K	TTCATGTTTTTTT	.	41	9	126	6	.	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	15	15	0	0	G|0.301;C|0.699	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	10	10	0	0	A|0.003;G|0.997	0	0	0	0	0
CRIM1	51232	hgsc.bcm.edu	37	2	36583461	36583461	+	Missense_Mutation	SNP	G	G	T	rs3821169		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CRIM1-118	NM_016441	exon1	c.G26T	p.G9V	ACAGGGGGTTGGC	.	24	12	1	0	G|0.927;T|0.073	0	0	0	0	0
ADD2	119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	70933534	70933534	+	Missense_Mutation	SNP	C	C	T	rs200519011		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ADD2-93	NM_001185055	exon2	c.G55A	p.E19K	TCTCTTCGCTCAT	.	41	18	17	0	C|0.999;T|0.000	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001145054	exon4	c.A943C	p.T315P	GGCGGGTGGCGCC	.	133	44	34	8	.	3	2	1	0	0
ATOH8	84913	hgsc.bcm.edu	37	2	85981761	85981761	+	Missense_Mutation	SNP	T	T	C	rs17851881		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ATOH8-90	NM_032827	exon1	c.T449C	p.L150P	CGGGTCTGCGTCC	.	11	4	0	0	T|0.382;C|0.618	0	0	0	0	0
LYG2	254773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99860495	99860495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	LYG2-91	NM_175735	exon5	c.T487C	p.F163L	TGGGGAATTTTTT	.	90	48	92	0	.	0	0	0	0	0
XIRP2	129446	broad.mit.edu;bcgsc.ca	37	2	168100197	168100197	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	XIRP2-104	NM_152381	exon9	c.A2295T	p.G765G	AAAGGGAGATGTA	.	193	7	236	0	.	0	0	0	0	0
CTLA4	1493	bcgsc.ca	37	2	204732714	204732714	+	Missense_Mutation	SNP	A	A	G	rs231775	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CTLA4-90	NM_005214	exon1	c.A49G	p.T17A	CTGGCTACCAGGA	.	120	5	124	0	A|0.591;G|0.409	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	8	8	0	0	A|0.165;G|0.835	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	4	4	0	0	G|0.122;C|0.878	1	0	1	0	0
LRRN4	164312	hgsc.bcm.edu	37	20	6033033	6033033	+	Missense_Mutation	SNP	G	G	A	rs6107751	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	LRRN4-93	NM_152611	exon2	c.C413T	p.P138L	CACGGCGGCAGAG	.	5	5	0	0	G|0.864;A|0.136	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	39	37	0	0	C|0.769;T|0.231	0	0	0	0	0
SLC35C2	51006	hgsc.bcm.edu;bcgsc.ca	37	20	44979124	44979131	+	Frame_Shift_Del	DEL	CTGGAGCC	CTGGAGCC	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	CTGGAGCC	CTGGAGCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SLC35C2-91	NM_173179	exon10	c.1000_1007del	p.334_336del	TCGGGGCTGGAGC	.	105	81	110	1	.	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	19	19	0	0	C|0.999;T|0.001	22	0	22	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36041978	36041978	+	Silent	SNP	A	A	G	rs7280973		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CLIC6-91	NM_053277	exon1	c.A291G	p.Q97Q	GCCCCAAGGAGGG	.	4	4	0	0	A|0.001;G|0.999	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu	37	21	46924425	46924425	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	COL18A1-90	NM_030582	exon33	c.C3363A	p.P1121P	CCCCCCCGGCCCC	.	27	7	12	0	.	1	1	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	20	10	0	0	A|0.354;G|0.646	1	1	0	0	0
C22orf26	55267	hgsc.bcm.edu	37	22	46449891	46449891	+	Missense_Mutation	SNP	G	G	A	rs12159707		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	C22orf26-90	NM_018280	exon1	c.C83T	p.P28L	GGGTTGGGGGGGG	.	9	5	0	0	A|0.248;C|0.000;G|0.752	5	3	2	0	0
RBMS3	27303	broad.mit.edu;ucsc.edu	37	3	30029712	30029712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RBMS3-90	NM_001003793	exon13	c.G1177A	p.E393K	TCTATTGAAGTAA	.	59	10	53	1	.	0	0	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266103	41266103	+	Missense_Mutation	SNP	G	G	C	rs121913399	alternate_allele	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CTNNB1-24361	NM_001098209	exon3	c.G100C	p.G34R	GACTCTGGAATCC	.	265	59	185	0	.	150	114	36	0	0
LYZL4	131375	broad.mit.edu	37	3	42448455	42448455	+	Missense_Mutation	SNP	G	G	A	rs76947105	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	LYZL4-90	NM_144634	exon3	c.C175T	p.P59S	CCATGGGGTTGAA	.	240	4	169	0	G|0.997;A|0.003	0	0	0	0	0
ARHGEF3	50650	bcgsc.ca	37	3	56835761	56835761	+	Silent	SNP	G	G	A	rs3732508	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ARHGEF3-228	NM_019555	exon1	c.C66T	p.P22P	GGCCGGGGGTAGC	.	215	7	127	1	G|0.677;A|0.323	9	9	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	8	8	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	10	10	0	0	G|0.252;C|0.748	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	18	18	1	0	T|0.412;A|0.588	0	0	0	0	0
ADCY5	111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123010075	123010075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ADCY5-94	NM_183357	exon18	c.C3212T	p.A1071V	ATGACCGCCACAC	.	566	334	379	0	.	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195508940	195508940	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MUC4-90	NM_018406	exon2	c.G9511C	p.V3171L	TGGTGACAGGAAG	.	371	12	254	0	.	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195595405	195595405	+	Silent	SNP	G	G	A	rs1056726	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TNK2-957	NM_001010938	exon13	c.C1953T	p.F651F	CTCACCGAAGTCG	.	10	10	2	0	G|0.936;A|0.064	5	0	5	0	0
RNF212	285498	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	1107223	1107223	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RNF212-68	NM_194439	exon1	c.C30T	p.C10C	CTGGAAGCAGCGA	.	212	67	90	1	.	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	137	13	11	0	T|0.980;C|0.020	9	9	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1389005	1389005	+	Missense_Mutation	SNP	T	T	C	rs71614970		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CRIPAK-90	NM_175918	exon1	c.T706C	p.C236R	TGCCGATGCGGAG	.	102	34	17	0	C|1.000;|0.000	27	15	12	0	0
MSANTD1	345222	hgsc.bcm.edu	37	4	3251006	3251006	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001042690	exon1	c.C57T	p.G19G	CACAGGCGCCTCC	.	14	9	0	0	.	0	0	0	0	0
DOK7	285489	hgsc.bcm.edu	37	4	3495095	3495095	+	Missense_Mutation	SNP	G	G	A	rs9684786	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	DOK7-91	NM_173660	exon7	c.G1382A	p.G461D	CCCAGGGCAGCGA	.	40	26	1	0	G|0.834;A|0.166	0	0	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	78	16	5	0	.	0	0	0	0	0
CRMP1	1400	hgsc.bcm.edu	37	4	5894586	5894586	+	Silent	SNP	G	G	A	rs143304363		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CRMP1-92	NM_001014809	exon1	c.C111T	p.A37A	CACCGCGGCGAAC	.	18	16	0	0	G|0.946;A|0.054	0	0	0	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CCDC96-90	NM_153376	exon1	c.T309C	p.V103V	AGCCCCAACCTCG	.	6	6	0	0	A|0.036;G|0.964	0	0	0	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044380	7044380	+	Missense_Mutation	SNP	C	C	T	rs871134		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CCDC96-90	NM_153376	exon1	c.G286A	p.E96K	CGGGCTCGGGCTG	.	8	8	0	0	C|0.472;T|0.528	3	0	3	0	0
CPZ	8532	broad.mit.edu	37	4	8605757	8605757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CPZ-93	NM_001014447	exon4	c.G551A	p.R184H	TCATCCGCTTCAG	.	92	3	24	0	.	0	0	0	0	0
C1QTNF7	114905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15444216	15444216	+	Silent	SNP	C	C	T	rs140722077	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	C1QTNF7-90	NM_001135170	exon3	c.C684T	p.F228F	GACCTTCGACGCC	.	90	48	69	0	C|0.999;T|0.001	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	8	8	0	0	G|0.794;C|0.206	5	0	5	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	20	20	0	0	G|0.025;C|0.975	0	0	0	0	0
LOC550113	0	bcgsc.ca	37	4	68928722	68928722	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	.	.	.	.	TTCACTACAAGAC	.	87	4	103	0	.	0	0	0	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662248	77662248	+	Silent	SNP	G	G	A	rs60216375	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SHROOM3-93	NM_020859	exon5	c.G2922A	p.S974S	GGCGTCGGCCTCC	.	6	6	0	0	G|0.531;A|0.469	2	0	2	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662309	77662309	+	Silent	SNP	C	C	T	rs344143	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SHROOM3-93	NM_020859	exon5	c.C2983T	p.L995L	GGCGACCTGGCCA	.	18	18	0	0	C|0.604;T|0.396	2	0	2	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001029870	exon1	c.A801G	p.T267T	CCTGCTTGTCGCA	.	15	6	0	0	T|0.691;C|0.309	0	0	0	0	0
GK2	2712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	80328985	80328985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	GK2-94	NM_033214	exon1	c.G370A	p.E124K	GATCCTCAACAGT	.	156	43	170	0	.	0	0	0	0	0
COQ2	27235	hgsc.bcm.edu	37	4	84205872	84205872	+	Missense_Mutation	SNP	C	C	A	rs6818847	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	COQ2-92	NM_015697	exon1	c.G196T	p.V66L	GTGCCACAGCCCG	.	13	13	0	0	C|0.324;A|0.676	0	0	0	0	0
UNC5C	8633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96163681	96163681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	UNC5C-94	NM_003728	exon7	c.G1007A	p.R336H	CTCCTGCGCCAGT	.	141	89	130	0	.	1	0	1	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126367514	126367514	+	Silent	SNP	C	C	T	rs147010455		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FAT4-108	NM_024582	exon8	c.C7260T	p.S2420S	CACCAGCGCATTG	.	132	30	148	0	C|0.999;T|0.001	0	0	0	0	0
LRBA	987	broad.mit.edu	37	4	151769988	151769988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	LRBA-157	NM_006726	exon26	c.C4321T	p.R1441W	ACTGCCGCAAAAT	.	143	3	118	0	.	2	2	0	0	0
TLR2	7097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154624343	154624343	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TLR2-523	NM_003264	exon3	c.C284G	p.S95C	AAGATTCTTTTTC	.	154	54	168	0	.	0	0	0	0	0
MAP9	79884	ucsc.edu;bcgsc.ca	37	4	156273768	156273768	+	Missense_Mutation	SNP	T	T	C	rs2305050	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MAP9-91	NM_001039580	exon13	c.A1801G	p.N601D	ATTCATTAATAGC	.	42	5	32	0	T|0.372;C|0.628	2	2	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ADAMTS16-275	NM_139056	exon1	c.T52C	p.L18L	ATGCTGTTGGCGC	.	7	6	0	0	T|0.352;C|0.648	0	0	0	0	0
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16701501	16701501	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MYO10-3	NM_012334	exon25	c.C3003T	p.D1001D	GGCGTCGTCGTCG	.	135	53	91	0	.	0	0	0	0	0
SLC1A3	6507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36671233	36671233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SLC1A3-90	NM_004172	exon4	c.T422C	p.I141T	TAATCATTGTCAT	.	347	135	224	0	.	10	3	7	0	0
SNX18	112574	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	53815125	53815125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SNX18-226	NM_052870	exon1	c.C1343T	p.T448M	ACCACACGGCCAA	.	482	69	265	2	.	23	21	2	0	0
SV2C	22987	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75594617	75594617	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SV2C-91	NM_014979	exon10	c.1503-2A>G	.	TTGGGCAGATTCA	.	131	50	109	1	.	0	0	0	0	0
HSPA9	3313	broad.mit.edu	37	5	137909456	137909456	+	Missense_Mutation	SNP	G	G	T	rs201580482	alternate_allele	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	HSPA9-226	NM_004134	exon3	c.C224A	p.A75E	ACCTTTGCTTGTT	.	57	5	92	1	G|0.999;C|0.001	0	0	0	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	PCDHB7-95	NM_018940	exon1	c.G1578T	p.A526A	GCAGGCGTTCGAG	.	268	8	79	0	.	2	0	2	0	0
B4GALT7	11285	hgsc.bcm.edu	37	5	177036622	177036622	+	Missense_Mutation	SNP	G	G	A	rs145082497	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	B4GALT7-91	NM_007255	exon6	c.G910A	p.G304R	GTGGGCGGGGCCC	.	558	37	168	0	G|0.999;A|0.001	110	110	0	0	0
BTNL9	153579	hgsc.bcm.edu	37	5	180486404	180486404	+	Missense_Mutation	SNP	C	C	T	rs186444058		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	BTNL9-91	NM_152547	exon11	c.C1150T	p.H384Y	GGCCGCCACTACT	.	22	14	0	0	C|0.983;T|0.017	1	1	0	0	0
FOXQ1	94234	hgsc.bcm.edu	37	6	1313117	1313117	+	Missense_Mutation	SNP	A	A	C	rs9502889		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FOXQ1-226	NM_033260	exon1	c.A178C	p.T60P	AGAGATACGCAGG	.	4	4	0	0	A|0.161;C|0.839	0	0	0	0	0
FOXQ1	94234	hgsc.bcm.edu	37	6	1313121	1313121	+	Missense_Mutation	SNP	A	A	C	rs9502890		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FOXQ1-226	NM_033260	exon1	c.A182C	p.Q61P	ATACGCAGGGCGA	.	4	4	0	0	A|0.173;C|0.827	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	PPP1R3G-136	NM_001145115	exon1	c.G492C	p.L164L	GCGCCTGCGAAGC	.	8	8	0	0	G|0.000;C|1.000	7	0	7	0	0
ZNF391	346157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27368446	27368446	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ZNF391-69	NM_001076781	exon3	c.C297T	p.H99H	TAAACACCAAAGA	.	77	43	69	0	.	0	0	0	0	0
FGD2	221472	broad.mit.edu	37	6	36993620	36993620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FGD2-229	NM_173558	exon14	c.A1511G	p.N504S	ACGACAACAGGCC	.	298	6	149	0	.	1	1	0	0	0
FAM46A	55603	hgsc.bcm.edu	37	6	82461742	82461742	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FAM46A-90	NM_017633	exon2	c.C117T	p.G39G	GTCGCCGCCGCCG	.	100	14	19	0	.	16	16	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	34	34	0	0	T|0.089;G|0.911	0	0	0	0	0
SEC63	11231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	108194052	108194052	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SEC63-227	NM_007214	exon20	c.C2099A	p.S700X	GAGTCTGATCTCA	.	153	78	174	0	.	72	31	41	0	0
PEX7	5191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	137193359	137193359	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	PEX7-90	NM_000288	exon8	c.G771A	p.V257V	TTCTGTGCTGGCC	.	33	9	33	0	.	19	7	12	0	0
ADGB	79747	broad.mit.edu	37	6	147106841	147106841	+	Silent	SNP	A	A	G	rs259391	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_024694	exon32	c.A4308G	p.K1436K	ACCAAAAGAAGAA	.	115	3	103	0	A|0.449;G|0.551	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	7	6	0	0	G|0.492;C|0.508	6	4	2	0	0
ARID1B	57492	hgsc.bcm.edu	37	6	157099799	157099799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ARID1B-154	NM_017519	exon1	c.G736A	p.G246S	CCCGGCGGCCGCG	.	20	9	1	0	.	1	1	0	0	0
TBP	6908	bcgsc.ca	37	6	170871052	170871052	+	Silent	SNP	G	G	A	rs112083427	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TBP-91	NM_003194	exon3	c.G228A	p.Q76Q	ACAGCAGCAGCAG	.	82	7	63	7	G|0.500;A|0.500	333	324	8	0	1
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	9	9	0	0	G|0.411;T|0.589	0	0	0	0	0
DNAH11	8701	bcgsc.ca	37	7	21675643	21675643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	DNAH11-146	.	.	.	.	TTGTCTGTTCAGA	.	184	78	155	3	.	0	0	0	0	0
DOCK4	9732	hgsc.bcm.edu	37	7	111368454	111368454	+	Missense_Mutation	SNP	G	G	A	rs34597439	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	DOCK4-26	NM_014705	exon52	c.C5777T	p.S1926L	GGCTCCGACGTGA	.	23	12	1	0	G|0.979;A|0.021	2	0	2	0	0
CADPS2	93664	broad.mit.edu	37	7	122526225	122526225	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CADPS2-94	NM_001167940	exon1	c.167delC	p.S56fs	CTCACAGATCTGG	.	39	14	10	0	.	0	0	0	0	0
ARHGEF5	7984	bcgsc.ca	37	7	144070294	144070294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ARHGEF5-229	NM_005435	exon10	c.C4057T	p.R1353W	CTGATCCGGGACT	.	1518	429	1088	4	.	0	0	0	0	0
ASIC3	9311	broad.mit.edu	37	7	150746080	150746080	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_020322	exon1	c.C108A	p.G36G	GCCAGGCAGCCTG	.	139	11	21	2	.	1	1	0	0	0
AGAP3	116988	broad.mit.edu	37	7	150835296	150835296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	AGAP3-92	NM_031946	exon12	c.C1562A	p.A521D	CCTGGGCTGGCCC	.	113	6	17	1	.	18	18	0	0	0
REEP4	80346	broad.mit.edu	37	8	21996554	21996554	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	REEP4-91	NM_025232	exon6	c.C438A	p.G146G	CAGCCTGCCGGCC	.	37	7	33	0	.	41	41	0	0	0
TACC1	6867	bcgsc.ca	37	8	38677932	38677932	+	Silent	SNP	A	A	G	rs2013586	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TACC1-187	NM_006283	exon3	c.A1170G	p.E390E	GTGGGAAAGCCCC	.	104	5	93	0	A|0.696;G|0.304	10	10	0	0	0
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72981348	72981348	+	Silent	SNP	G	G	T	rs146503939	alternate_allele	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TRPA1-230	NM_007332	exon3	c.C354A	p.L118L	TCTGCTGAGAAGA	.	90	40	79	0	G|1.000;C|0.000	0	0	0	0	0
E2F5	1875	hgsc.bcm.edu	37	8	86089787	86089787	+	Silent	SNP	C	C	G	rs12926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	E2F5-415	NM_001083588	exon1	c.C132G	p.A44A	GGGCGCCGGGGGC	.	10	5	0	0	C|0.434;G|0.566	2	2	0	0	0
MROH6	642475	hgsc.bcm.edu	37	8	144649601	144649601	+	Silent	SNP	A	A	G	rs13268196		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001100878	exon14	c.T1968C	p.A656A	GGCCACAGCCGGC	.	9	9	0	0	A|0.057;G|0.943	11	0	11	0	0
MROH6	642475	hgsc.bcm.edu	37	8	144649625	144649625	+	Silent	SNP	T	T	C	rs10097556		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001100878	exon14	c.A1944G	p.R648R	CTGCAGTCGCCCT	.	17	17	0	0	T|0.058;C|0.942	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	21	20	0	0	G|0.572;C|0.428	0	0	0	0	0
IL33	90865	bcgsc.ca	37	9	6241723	6241723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	IL33-90	NM_001199640	exon2	c.A29G	p.N10S	CAACCAACAAAAT	.	90	4	157	0	.	0	0	0	0	0
PTPRD	5789	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	8376721	8376721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	PTPRD-912	NM_002839	exon38	c.G4392T	p.K1464N	GTCACACTTCACC	.	87	31	119	1	.	0	0	0	0	0
PSIP1	11168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	15478495	15478495	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	PSIP1-658	NM_021144	exon7	c.C609T	p.P203P	AGGACAGGGCTGT	.	186	12	301	0	.	44	40	4	0	0
AKAP2	11217	hgsc.bcm.edu	37	9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	rs78923754	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	AKAP2-24	NM_001004065	exon1	c.C59T	p.P20L	GACCCCCGGAGTC	.	17	9	1	0	C|0.917;T|0.083	1	1	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126135831	126135831	+	Silent	SNP	T	T	C	rs7848449	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CRB2-91	NM_173689	exon10	c.T3021C	p.A1007A	GCTGGCTGAGAAC	.	13	13	0	0	T|0.886;C|0.114	0	0	0	0	0
GPR144	347088	hgsc.bcm.edu	37	9	127215430	127215430	+	Missense_Mutation	SNP	G	G	C	rs184300525	by1000genomes	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001161808	exon4	c.G454C	p.D152H	CAGTGGGACTGTG	.	36	13	0	0	G|0.991;C|0.009	0	0	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	12	12	0	0	A|0.235;G|0.765	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	4	4	0	0	A|0.006;C|0.994	0	0	0	0	0
CXorf58	254158	bcgsc.ca	37	X	23933912	23933912	+	Splice_Site	SNP	G	G	A	rs62584865	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CXorf58-130	NM_001169574	exon4	c.311+1G>A	.	ATTCAGGTAATGT	.	193	9	186	0	G|0.991;A|0.009	0	0	0	0	0
SOWAHD	347454	hgsc.bcm.edu	37	X	118892888	118892888	+	Silent	SNP	G	G	C	rs2782222	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_001105576	exon1	c.G258C	p.A86A	TCCTGCGGGGTGG	.	6	4	0	0	G|0.401;C|0.599	3	0	3	0	0
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651199	1651200	+	In_Frame_Ins	INS	-	-	GGCTGTGGCTCC	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	KRTAP5-5-23	NM_001001480	exon1	c.129_130insGGCTGTGGCTCC	p.G43delinsGGCGS	CTGTGGAGGCTGT	.	83	22	29	0	.	0	0	0	0	0
POLG	5428	broad.mit.edu	37	15	89876827	89876828	+	In_Frame_Ins	INS	-	-	TGC	rs41550117	bycluster	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	POLG-228	NM_001126131	exon2	c.159_160insGCA	p.Q53delinsQQ	CTGCTGTTGCTGC	.	35	10	11	0	.	0	0	0	0	0
BCR	613	broad.mit.edu	37	22	23653975	23653976	+	Frame_Shift_Ins	INS	-	-	CCGG	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	BCR-1349	NM_004327	exon19	c.3274_3275insCCGG	p.S1092fs	CGCGTGTCCGGTG	.	757	16	459	6	.	0	0	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28194933	28194934	+	In_Frame_Ins	INS	-	-	TGCTGC	rs75719175	alternate_allele	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MN1-993	NM_002430	exon1	c.1599_1600insGCAGCA	p.Q533delinsQQQ	CTGCTGTTGCTGC	.	99	38	13	0	.	0	0	0	0	0
TTLL11	158135	broad.mit.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	-	TGGCCT	rs201653732		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TTLL11-112	NM_001139442	exon1	c.368_369insAGGCCA	p.T123delinsKAT	TCCGCTGTGGCCT	.	17	7	4	0	-|0.843;TGGCCT|0.157	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806D	TGGAGTTGCTTCC	.	14	0	0	0	T|0.470;C|0.530	0	0	0	0	0
