Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CCNL2	81669	broad.mit.edu;bcgsc.ca	37	1	1334591	1334591	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCNL2-70	NM_030937	exon1	c.G96T	p.S32S	CCCCTGCGACCCT	.	71	39	57	1	.	0	0	0	0	0
C1orf158	93190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12815709	12815709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C1orf158-92	NM_152290	exon2	c.C171A	p.F57L	CCCCTTCCCAGAC	.	354	162	340	1	.	0	0	0	0	0
NIPAL3	57185	broad.mit.edu	37	1	24766704	24766704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NIPAL3-90	NM_020448	exon3	c.G136T	p.V46L	CACCTCGTGGTCA	.	127	4	85	1	.	0	0	0	0	0
TRNP1	388610	hgsc.bcm.edu	37	1	27320356	27320356	+	Missense_Mutation	SNP	T	T	C	rs6689941		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TRNP1-44	NM_001013642	exon1	c.T79C	p.W27R	CCGCCCTGGGATC	.	4	4	0	0	T|0.030;C|0.970	0	0	0	0	0
MACF1	23499	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39851188	39851188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MACF1-165	NM_012090	exon53	c.G7745T	p.G2582V	GCCCTGGAGATGT	.	166	65	172	2	.	0	0	0	0	0
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150443166	150443166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RPRD2-23	NM_015203	exon11	c.G1742A	p.S581N	CCTCCAGTGCCCA	.	80	40	66	0	.	0	0	0	0	0
INTS3	65123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153721204	153721204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	INTS3-93	NM_023015	exon6	c.G557C	p.S186T	CAGAAAGTGTTCT	.	197	55	129	2	.	0	0	0	0	0
KCNN3	3782	hgsc.bcm.edu	37	1	154842250	154842250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KCNN3-91	NM_001204087	exon1	c.C191A	p.P64Q	AGCTGCGGAGGCT	.	60	11	14	0	.	0	0	0	0	0
HAPLN2	60484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156593357	156593357	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HAPLN2-90	NM_021817	exon3	c.A75G	p.Q25Q	AGCCCAAGGAGAC	.	53	6	67	0	.	0	0	0	0	0
GPA33	10223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167042639	167042639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GPA33-90	NM_005814	exon2	c.C181A	p.L61I	GGAGGAGCTTATC	.	130	29	145	0	.	0	0	0	0	0
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175046673	175046673	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TNN-138	NM_022093	exon2	c.T119A	p.V40D	AACAGGTCACTGT	.	144	57	145	0	.	0	0	0	0	0
PRG4	10216	bcgsc.ca	37	1	186276284	186276286	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	CTC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PRG4-91	NM_005807	exon7	c.1433_1435del	p.478_479del	CCACCACTCCCAA	.	24	10	34	2	.	0	0	0	0	0
ZNF281	23528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200378016	200378016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ZNF281-154	NM_012482	exon2	c.C818T	p.S273F	TGATAGGAGCTTC	.	179	35	159	0	.	0	0	0	0	0
FLVCR1	28982	broad.mit.edu	37	1	213037122	213037122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FLVCR1-90	NM_014053	exon2	c.A794G	p.N265S	CACAGAATGACAC	.	103	4	113	0	.	0	0	0	0	0
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214816433	214816433	+	Silent	SNP	C	C	T	rs200241672	alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CENPF-567	NM_016343	exon12	c.C4752T	p.L1584L	AGAGCTCGAGCAG	.	102	47	102	0	C|0.999;G|0.001	0	0	0	0	0
USH2A	7399	broad.mit.edu	37	1	216363571	216363571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	USH2A-115	NM_206933	exon20	c.G4390A	p.A1464T	CTGCTGCTAAAGT	.	67	4	81	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228399799	228399799	+	Silent	SNP	C	C	T	rs11582369	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OBSCN-403	NM_001271223	exon2	c.C315T	p.C105C	CGCGTGCGCCGAG	.	23	9	1	0	C|0.943;T|0.057	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	64	53	4	0	C|0.643;T|0.357	0	0	0	0	0
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228563506	228563506	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OBSCN-403	NM_001271223	exon109	c.T25638C	p.I8546I	CTACATTGTGCAG	.	208	82	204	1	.	0	0	0	0	0
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	233388165	233388165	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PCNXL2-91	NM_014801	exon7	c.G2063C	p.G688A	TCAGGCCCACTGA	.	237	15	229	0	.	0	0	0	0	0
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236722384	236722384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HEATR1-93	NM_018072	exon35	c.G4822A	p.V1608M	TGCCCACCAGCCC	.	59	23	27	0	.	0	0	0	0	0
LIPN	643418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	90528645	90528645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001102469	exon5	c.T632C	p.I211T	CGGGCATTTTTAC	.	68	33	68	0	.	0	0	0	0	0
IFIT1B	439996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	91143636	91143636	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	IFIT1B-90	NM_001010987	exon2	c.A566T	p.D189V	GCCTGGATAAATT	.	79	12	80	0	.	0	0	0	0	0
PLCE1	51196	broad.mit.edu;bcgsc.ca	37	10	95931233	95931233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PLCE1-229	NM_016341	exon4	c.C1789G	p.L597V	GAAGATCTGGTGA	.	269	9	252	0	.	0	0	0	0	0
CCDC147	159686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	106159171	106159171	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCDC147-71	NM_001008723	exon12	c.A1728T	p.E576D	TATTGAAAAGCAA	.	89	15	101	0	.	0	0	0	0	0
TCF7L2	6934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	114711350	114711350	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TCF7L2-586	NM_001198526	exon3	c.C365A	p.S122X	CGCTCTCGCCCAC	.	114	26	114	0	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1092926	1092926	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MUC2-90	NM_002457	exon30	c.C4745G	p.T1582R	CCCCAACATCGAC	.	168	10	151	2	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093413	1093413	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MUC2-90	NM_002457	exon30	c.G5232T	p.T1744T	AACCACGACACCC	.	160	6	122	0	.	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1268449	1268449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_002458	exon31	c.G10339A	p.V3447M	CCCCCAGTGCCGA	.	913	82	728	2	.	0	0	0	0	0
KRTAP5-1	387264	hgsc.bcm.edu	37	11	1606121	1606150	+	In_Frame_Del	DEL	CCACAGCCACCCTTGGATCCCCCACAAGAG	CCACAGCCACCCTTGGATCCCCCACAAGAG	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	CCACAGCCACCCTTGGATCCCCCACAAGAG	CCACAGCCACCCTTGGATCCCCCACAAGAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KRTAP5-1-44	NM_001005922	exon1	c.330_359del	p.110_120del	CCGGAACCACAGC	.	122	0	101	0	.	0	0	0	0	0
TH	7054	hgsc.bcm.edu;broad.mit.edu	37	11	2189798	2189798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TH-90	NM_199292	exon4	c.G503A	p.R168H	CCTCGGCGCACCT	.	95	12	22	0	.	0	0	0	0	0
OR51E2	81285	broad.mit.edu	37	11	4703475	4703475	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR51E2-502	NM_030774	exon2	c.467delT	p.F156fs	AGTGGGAAAAAAA	.	105	9	106	0	.	0	0	0	0	0
OR56A3	390083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5969056	5969056	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR56A3-68	NM_001003443	exon1	c.T480C	p.T160T	TATGACTCTGCCC	.	165	42	151	0	.	0	0	0	0	0
CTR9	9646	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	10796822	10796822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CTR9-92	NM_014633	exon23	c.G2954A	p.R985H	AACGACGTCCACC	.	80	15	77	2	.	0	0	0	0	0
OR4C16	219428	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	55339779	55339779	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR4C16-70	NM_001004701	exon1	c.T176A	p.F59Y	TGTTCTTCTTCCT	.	217	12	159	0	.	0	0	0	0	0
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55432669	55432669	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR4C6-70	NM_001004704	exon1	c.A27C	p.E9D	GACTGAATTCATT	.	33	7	28	0	.	0	0	0	0	0
OR5L2	26338	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55595126	55595126	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR5L2-69	NM_001004739	exon1	c.G432A	p.L144L	GGAGCTGACCTCT	.	238	51	226	1	.	0	0	0	0	0
NRXN2	9379	hgsc.bcm.edu	37	11	64480641	64480641	+	Silent	SNP	G	G	A	rs2518907		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NRXN2-232	NM_138732	exon2	c.C531T	p.G177G	CAAGAGGCCGCGG	.	4	4	0	0	G|0.449;A|0.551	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	10	10	0	0	G|0.005;C|0.995	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	19	15	0	0	C|0.233;T|0.767	0	0	0	0	0
TMEM151A	256472	hgsc.bcm.edu	37	11	66062588	66062588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TMEM151A-90	NM_153266	exon2	c.G871A	p.V291M	TGGCTCGTGTCGG	.	65	32	7	0	.	0	0	0	0	0
UNC93B1	81622	broad.mit.edu	37	11	67763107	67763107	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	.	.	.	.	CAGGGCACTGCCC	.	216	4	74	1	.	0	0	0	0	0
PPFIA1	8500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	70228237	70228237	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PPFIA1-228	NM_003626	exon27	c.G3594A	p.R1198R	AGTCAGGACTTAC	.	215	19	76	0	.	0	0	0	0	0
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70333395	70333395	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SHANK2-94	NM_133266	exon10	c.C1239T	p.Y413Y	GGGGACGTAGACG	.	335	82	167	0	.	0	0	0	0	0
WNT11	7481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	75898196	75898196	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	WNT11-562	NM_004626	exon5	c.C978T	p.V326V	CCGCTCGACCACG	.	163	14	80	0	.	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751543	76751604	+	In_Frame_Del	DEL	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_138706	exon3	c.947_1006del	p.316_336del	GTGTCTTGGAGCG	.	25	0	0	0	.	0	0	0	0	0
SIK2	23235	broad.mit.edu	37	11	111591721	111591721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SIK2-783	NM_015191	exon12	c.G1879C	p.E627Q	GGACCGGAGGCAG	.	85	4	78	0	.	0	0	0	0	0
USP28	57646	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113679796	113679796	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	USP28-706	NM_020886	exon17	c.C2153G	p.S718C	GATGTAGAGTAGT	.	250	61	283	2	.	0	0	0	0	0
VSIG2	23584	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124618582	124618582	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	VSIG2-93	NM_014312	exon5	c.C664T	p.Q222X	CCATCTGGTTGGT	.	149	45	158	1	.	0	0	0	0	0
FGF23	8074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	4488634	4488634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FGF23-660	NM_020638	exon1	c.C115G	p.L39V	GGATCAGGCCACC	.	107	9	54	0	.	0	0	0	0	0
SCNN1A	6337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6457898	6457898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SCNN1A-90	NM_001159576	exon11	c.G1801A	p.V601I	CCGTGACAGAGGG	.	175	24	178	0	.	0	0	0	0	0
PTPN6	5777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	7060782	7060782	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PTPN6-703	NM_080548	exon2	c.C25T	p.R9X	TTTCACCGAGACC	.	115	9	113	0	.	0	0	0	0	0
CD163L1	283316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7522051	7522051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CD163L1-100	NM_174941	exon15	c.G3941A	p.R1314Q	TTGCACCGCATGT	.	88	28	71	1	.	0	0	0	0	0
ARID2	196528	broad.mit.edu	37	12	46211485	46211485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ARID2-100	NM_152641	exon5	c.G451T	p.D151Y	TCCATGGACTTTA	.	33	4	36	0	.	0	0	0	0	0
HDAC7	51564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48189737	48189737	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HDAC7-289	NM_015401	exon9	c.A858C	p.T286T	GGACACTGTCGGC	.	122	20	80	0	.	0	0	0	0	0
TMBIM6	7009	broad.mit.edu;bcgsc.ca	37	12	50136045	50136045	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TMBIM6-90	NM_001098576	exon1	c.A126G	p.G42G	TTTCGGATTGGTT	.	81	10	56	1	.	0	0	0	0	0
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57976934	57976934	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KIF5A-517	NM_004984	exon28	c.C3071G	p.P1024R	TTTTCCCTCTCCA	.	130	31	90	0	.	0	0	0	0	0
SYCP3	50511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102122734	102122734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SYCP3-90	NM_001177949	exon9	c.C682T	p.R228W	ACTTCCGAACACT	.	90	20	71	0	.	0	0	0	0	0
MMAB	326625	broad.mit.edu	37	12	110011235	110011235	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MMAB-90	NM_052845	exon1	c.C51A	p.G17G	GCGCAGGCCAAGA	.	94	12	42	0	.	0	0	0	0	0
LHX5	64211	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	113906071	113906071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LHX5-90	NM_022363	exon3	c.A536G	p.K179R	CGCCGCTTGGTGC	.	268	14	173	0	.	0	0	0	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	25	14	1	0	T|0.767;C|0.233	0	0	0	0	0
NOS1	4842	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117725978	117725978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NOS1-154	NM_000620	exon5	c.C1028T	p.P343L	TGAGAAGGATGCA	.	130	61	104	1	.	0	0	0	0	0
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	119583269	119583269	+	Silent	SNP	C	C	T	rs201517536		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SRRM4-2	NM_194286	exon9	c.C855T	p.Y285Y	GGAGTACGACTCA	.	103	40	102	0	C|1.000;T|0.000	0	0	0	0	0
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120589045	120589045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GCN1L1-94	NM_006836	exon34	c.G4213A	p.V1405M	CCTTCACCAGGCC	.	101	15	105	0	.	0	0	0	0	0
CLIP1	6249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122812908	122812908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CLIP1-155	NM_001247997	exon16	c.G2933C	p.S978T	TCAATACTTTTTT	.	71	14	50	0	.	0	0	0	0	0
RIMBP2	23504	hgsc.bcm.edu	37	12	130921471	130921471	+	Silent	SNP	T	T	C	rs2292663	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	86	49	2	0	T|0.868;C|0.132	0	0	0	0	0
GSX1	219409	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28367932	28367932	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GSX1-69	NM_145657	exon2	c.C642T	p.G214G	TGGCGGCGGCGGC	.	180	80	98	1	.	0	0	0	0	0
TEP1	7011	hgsc.bcm.edu;broad.mit.edu	37	14	20869174	20869174	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TEP1-95	NM_007110	exon9	c.1518delG	p.G506fs	TTTGTTCCCCCGT	.	221	13	144	0	.	0	0	0	0	0
CEBPE	1053	broad.mit.edu	37	14	23588089	23588089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CEBPE-92	NM_001805	exon1	c.G212T	p.G71V	CCGGGGCCCTTGA	.	90	9	63	0	.	0	0	0	0	0
SAMD4A	23034	hgsc.bcm.edu	37	14	55227103	55227103	+	Silent	SNP	C	C	T	rs12879706		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SAMD4A-90	NM_015589	exon6	c.C1401T	p.A467A	CGGGGCCAGCGGG	.	5	5	0	0	C|0.973;T|0.027	0	0	0	0	0
ALKBH1	8846	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	78161095	78161095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ALKBH1-228	NM_006020	exon3	c.C441A	p.S147R	CTCTTTGCTCTGT	.	77	6	72	0	.	0	0	0	0	0
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	78205323	78205323	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SNW1-187	NM_012245	exon4	c.G412T	p.E138X	TAGCTTCTTCATC	.	143	13	134	0	.	0	0	0	0	0
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	102484794	102484794	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DYNC1H1-98	NM_001376	exon41	c.G8184A	p.L2728L	GTTCCTGCGCCAC	.	79	7	79	0	.	0	0	0	0	0
CDC42BPB	9578	bcgsc.ca	37	14	103447136	103447136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CDC42BPB-581	NM_006035	exon8	c.G1114A	p.V372M	CATCCACGTCGAA	.	166	8	149	0	.	0	0	0	0	0
EXOC3L4	91828	hgsc.bcm.edu	37	14	103568729	103568729	+	Silent	SNP	A	A	G	rs10142200	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	EXOC3L4-23	NM_001077594	exon2	c.A669G	p.E223E	GGAGGAAGCCCAC	.	9	9	0	0	A|0.486;G|0.514	0	0	0	0	0
C14orf180	400258	hgsc.bcm.edu	37	14	105055119	105055127	+	Frame_Shift_Del	DEL	GACGGGCAG	GACGGGCAG	-	rs61397088	bycluster;alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	GACGGGCAG	GACGGGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C14orf180-492	NM_001008404	exon5	c.482_784del	p.161_161del	GGCTCTGACGGGC	.	18	4	2	0	-|1.000;|0.000	0	0	0	0	0
SKOR1	390598	hgsc.bcm.edu	37	15	68120014	68120014	+	Silent	SNP	C	C	T	rs62015251		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SKOR1-90	NM_001258024	exon7	c.C1668T	p.Y556Y	GGCGTACGGCGCG	.	20	15	0	0	C|0.908;T|0.092	0	0	0	0	0
C15orf59	388135	broad.mit.edu	37	15	74032929	74032929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C15orf59-91	NM_001039614	exon2	c.G211T	p.D71Y	AGTCGTCCGGCTC	.	313	7	239	2	.	0	0	0	0	0
CSPG4	1464	broad.mit.edu	37	15	75981765	75981765	+	Missense_Mutation	SNP	G	G	T	rs149356457	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CSPG4-229	NM_001897	exon3	c.C1641A	p.N547K	GACAGGGTTGACC	.	226	9	185	2	G|0.998;T|0.002	0	0	0	0	0
RASGRF1	5923	broad.mit.edu;bcgsc.ca	37	15	79290464	79290464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RASGRF1-662	NM_002891	exon20	c.G2988C	p.E996D	CTTCCGCTCCTGG	.	223	9	156	0	.	0	0	0	0	0
HOMER2	9455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83527785	83527785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HOMER2-67	NM_199330	exon5	c.C523G	p.Q175E	ACCTCTGCGTCAA	.	123	42	107	0	.	0	0	0	0	0
SEC11A	23478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	85230912	85230912	+	Silent	SNP	A	A	G	rs71395463	alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SEC11A-23	NM_014300	exon3	c.T255C	p.F85F	TATCCTAAAAACA	.	113	7	92	0	A|0.500;T|0.500	0	0	0	0	0
RCCD1	91433	hgsc.bcm.edu	37	15	91500017	91500017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RCCD1-90	NM_001017919	exon2	c.G53T	p.G18V	GCTTCGGGCAGGA	.	37	13	4	0	.	0	0	0	0	0
C16orf89	146556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5097933	5097933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C16orf89-92	NM_001098514	exon7	c.C901A	p.Q301K	GATATTGAATAGC	.	39	18	29	0	.	0	0	0	0	0
ABCC6	368	broad.mit.edu	37	16	16302676	16302676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ABCC6-93	NM_001171	exon7	c.G703T	p.D235Y	AGAGGTCTTTTGG	.	310	87	303	2	.	0	0	0	0	0
CLN3	1201	bcgsc.ca	37	16	28502861	28502861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CLN3-90	NM_001042432	exon3	c.C67A	p.P23T	GCCGGGGCTCCGG	.	72	4	86	0	.	0	0	0	0	0
APOBR	55911	bcgsc.ca	37	16	28508069	28508069	+	Silent	SNP	C	C	T	rs151174	byfrequency;by1000genomes	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	APOBR-90	NM_018690	exon2	c.C1707T	p.G569G	GGGGGGCGCCCAG	.	208	7	197	0	C|0.746;T|0.254	0	0	0	0	0
VPS35	55737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	46705646	46705646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	VPS35-90	NM_018206	exon12	c.C1495T	p.R499C	CAGAGCGCAGCAG	.	154	29	147	0	.	0	0	0	0	0
DNAJA2	10294	broad.mit.edu;bcgsc.ca	37	16	47005448	47005448	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DNAJA2-226	NM_005880	exon3	c.A175T	p.N59Y	CAGGATTTGATAG	.	52	17	68	1	.	0	0	0	0	0
ABCC11	85320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48261750	48261750	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ABCC11-95	NM_033151	exon3	c.C362G	p.S121X	TGGACTGACAGTG	.	111	20	151	0	.	0	0	0	0	0
CDH5	1003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	66420935	66420935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CDH5-525	NM_001795	exon3	c.A434G	p.N145S	ACGTGAACGACAA	.	345	18	272	0	.	0	0	0	0	0
KLHDC4	54758	bcgsc.ca	37	16	87788864	87788864	+	Missense_Mutation	SNP	G	G	A	rs2303771	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KLHDC4-182	NM_001184856	exon4	c.C305T	p.T102I	TTTCTGGTATTGT	.	145	8	188	0	G|0.634;A|0.366	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	20	12	0	0	C|0.846;T|0.154	0	0	0	0	0
NOS2	4843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26110037	26110037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NOS2-156	NM_000625	exon6	c.T563A	p.F188Y	GTGGCGAAGATGA	.	228	45	147	1	.	0	0	0	0	0
ASIC2	40	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	31618452	31618452	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_183377	exon1	c.C682G	p.L228V	CGCAGAGCTCGCC	.	116	17	85	0	.	0	0	0	0	0
RAD51D	5892	broad.mit.edu	37	17	33428353	33428353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RAD51D-228	NM_001142571	exon9	c.G830A	p.S277N	CTCCCGCTGTCCC	.	65	3	41	0	.	0	0	0	0	0
AATF	26574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35310421	35310421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	AATF-90	NM_012138	exon3	c.G519C	p.E173D	GGAGGAGGAAGAC	.	306	116	244	0	.	0	0	0	0	0
C17orf78	284099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35734873	35734873	+	Missense_Mutation	SNP	G	G	A	rs184660990		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_173625	exon2	c.G115A	p.V39M	AAAGACGTGAGAA	.	323	49	262	0	G|0.999;A|0.001	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274069	39274069	+	Missense_Mutation	SNP	G	G	C	rs75281517		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_033059	exon1	c.C499G	p.R167G	AGACTCGGCCACA	.	206	6	140	0	G|0.750;C|0.250	0	0	0	0	0
KRT32	3882	broad.mit.edu	37	17	39619136	39619136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KRT32-90	NM_002278	exon6	c.G1163A	p.R388Q	TCCAGCCGGGCCC	.	156	20	100	2	.	0	0	0	0	0
KLHL10	317719	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39998282	39998282	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KLHL10-227	NM_152467	exon2	c.A402T	p.S134S	CAAGTCAGAGCTG	.	301	20	229	0	.	0	0	0	0	0
TBX21	30009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45821703	45821703	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TBX21-90	NM_013351	exon4	c.C911G	p.A304G	TGACTGCCTACCA	.	211	26	177	0	.	0	0	0	0	0
WFIKKN2	124857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48916914	48916914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	WFIKKN2-93	NM_175575	exon2	c.G265A	p.V89M	AGCTGCGTGGCGG	.	270	98	186	1	.	0	0	0	0	0
TOM1L1	10040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	52993172	52993172	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TOM1L1-91	NM_005486	exon7	c.G669C	p.L223F	CATATTGATGGAG	.	161	32	156	0	.	0	0	0	0	0
TBX4	9496	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59560686	59560686	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TBX4-227	NM_018488	exon8	c.C1447T	p.R483X	CAGGTCCGAGAGC	.	173	58	168	0	.	0	0	0	0	0
PITPNC1	26207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65683182	65683182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PITPNC1-226	NM_181671	exon9	c.A683G	p.D228G	TTTCAGATATGAC	.	138	27	96	0	.	0	0	0	0	0
RBFOX3	146713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	77093792	77093792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001082575	exon10	c.G604A	p.D202N	CAGGCCCGTAGAC	.	350	62	221	0	.	0	0	0	0	0
NPLOC4	55666	ucsc.edu;bcgsc.ca	37	17	79577266	79577266	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NPLOC4-24	NM_017921	exon5	c.G405A	p.L135L	TTTCCCCAAAGGG	.	422	143	352	4	.	0	0	0	0	0
CCDC178	374864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	30926226	30926226	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001105528	exon8	c.G607C	p.D203H	AAGAGTCAATTTT	.	96	9	95	0	.	0	0	0	0	0
LOXHD1	125336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44118286	44118286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_144612	exon26	c.A3928G	p.I1310V	GGGTGATCTCGTA	.	134	27	118	0	.	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	11	11	0	0	A|0.114;G|0.886	0	0	0	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KLF16-90	NM_031918	exon2	c.T660C	p.P220P	GGCACCAGGGCGC	.	28	13	2	0	A|0.591;G|0.409	0	0	0	0	0
FAM108A1	81926	broad.mit.edu	37	19	1881527	1881527	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM108A1-90	NM_031213	exon2	c.39delC	p.F13fs	GCAGCAGAAGAGG	.	69	7	16	0	.	0	0	0	0	0
FAM108A1	81926	broad.mit.edu	37	19	1881529	1881530	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM108A1-90	NM_031213	exon2	c.36_37del	p.12_13del	AGCAGAAGAGGCA	.	68	7	16	0	.	0	0	0	0	0
ADAT3	113179	hgsc.bcm.edu	37	19	1912251	1912251	+	Missense_Mutation	SNP	A	A	G	rs150715312	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ADAT3-154	NM_138422	exon2	c.A205G	p.K69E	CTGGACAAGCGCC	.	64	18	10	0	A|0.993;G|0.007	0	0	0	0	0
DOHH	83475	broad.mit.edu	37	19	3496745	3496745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DOHH-90	NM_001145165	exon2	c.C68A	p.A23D	AAGCGGGCCTGCA	.	147	12	24	1	.	0	0	0	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	9	7	1	0	C|0.752;G|0.248	0	0	0	0	0
TNFSF9	8744	broad.mit.edu	37	19	6534816	6534816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TNFSF9-227	NM_003811	exon3	c.G504T	p.Q168H	CCTGCAGCCACTG	.	82	8	23	1	.	0	0	0	0	0
CD209	30835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7808071	7808071	+	Missense_Mutation	SNP	C	C	T	rs200282091		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CD209-91	NM_021155	exon7	c.G1069A	p.A357T	ATTCCGCGCAGTC	.	147	44	130	0	C|0.999;T|0.000	0	0	0	0	0
HNRNPM	4670	broad.mit.edu	37	19	8550869	8550869	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.1557delC	p.G519fs	CATGGGCCCTGCC	.	168	11	39	0	.	0	0	0	0	0
HNRNPM	4670	hgsc.bcm.edu	37	19	8550870	8550870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.C1558T	p.P520S	ATGGGCCCTGCCA	.	168	23	39	0	.	0	0	0	0	0
HNRNPM	4670	hgsc.bcm.edu	37	19	8550874	8550874	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.C1562G	p.A521G	GCCCTGCCATCGA	.	167	38	39	0	.	0	0	0	0	0
HNRNPM	4670	hgsc.bcm.edu	37	19	8550876	8550876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.A1564G	p.I522V	CCTGCCATCGAGC	.	170	24	40	0	.	0	0	0	0	0
HNRNPM	4670	hgsc.bcm.edu	37	19	8550878	8550878	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.C1566G	p.I522M	TGCCATCGAGCGC	.	169	40	40	0	.	0	0	0	0	0
LPAR2	9170	broad.mit.edu;bcgsc.ca	37	19	19737970	19737970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LPAR2-501	NM_004720	exon2	c.G124A	p.V42I	CGCTGACGGTCAG	.	214	15	134	2	.	0	0	0	0	0
LSM14A	26065	broad.mit.edu	37	19	34710315	34710315	+	Silent	SNP	T	T	G	rs201741862		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LSM14A-91	NM_001114093	exon7	c.T801G	p.A267A	TTCAGCTCCAAGG	.	67	4	60	1	T|0.999;G|0.001	0	0	0	0	0
DMKN	93099	broad.mit.edu	37	19	36002403	36002404	+	Frame_Shift_Del	DEL	GC	GC	-	rs71940230	alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DMKN-155	NM_001126058	exon5	c.827_828del	p.276_276del	ACTGCTGCTGCCA	.	92	0	81	0	.	0	0	0	0	0
PRR19	284338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42814036	42814036	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PRR19-68	NM_199285	exon2	c.C300T	p.P100P	CAGCCCCACACTC	.	38	5	52	0	.	0	0	0	0	0
ZNF285	26974	bcgsc.ca	37	19	44891003	44891003	+	Silent	SNP	G	G	A	rs201302972		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ZNF285-94	NM_152354	exon4	c.C1404T	p.S468S	AACAGAGCTATAC	.	164	16	144	2	G|0.998;A|0.002	0	0	0	0	0
ZNF285	26974	bcgsc.ca	37	19	44891010	44891010	+	Missense_Mutation	SNP	G	G	C	rs150792548	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ZNF285-94	NM_152354	exon4	c.C1397G	p.A466G	CTATACGCAAAAT	.	178	15	147	3	A|0.000;C|0.002;G|0.998	0	0	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	16	16	0	0	C|0.254;G|0.746	0	0	0	0	0
SLC8A2	6543	hgsc.bcm.edu	37	19	47951134	47951134	+	Silent	SNP	C	C	T	rs61748880	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SLC8A2-94	NM_015063	exon4	c.G1695A	p.T565T	GCGCGCCGTGCCG	.	7	7	0	0	C|0.964;T|0.036	0	0	0	0	0
FAM83E	54854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49104471	49104471	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM83E-91	NM_017708	exon5	c.A1332G	p.P444P	TCGGGCTGGGGAC	.	71	6	54	0	.	0	0	0	0	0
KLK11	11012	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51527336	51527336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KLK11-650	NM_144947	exon4	c.T524C	p.L175P	GAAATGAGGCAGC	.	111	14	105	1	.	0	0	0	0	0
FPR1	2357	broad.mit.edu	37	19	52249450	52249450	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FPR1-524	NM_001193306	exon3	c.C798G	p.V266V	GATTCTGACTGTG	.	129	3	111	0	.	0	0	0	0	0
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56369429	56369429	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NLRP4-216	NM_134444	exon3	c.G670T	p.E224X	CAACCGGAGAGAC	.	102	14	111	0	.	0	0	0	0	0
ZNF835	90485	broad.mit.edu	37	19	57176051	57176051	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ZNF835-72	NM_001005850	exon2	c.C516A	p.G172G	GGCCTTGCCGCAC	.	68	5	46	0	.	0	0	0	0	0
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57327088	57327088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PEG3-164	NM_001146184	exon9	c.G2722T	p.V908F	CAGGAACACTTTT	.	69	5	48	0	.	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	6	6	0	0	A|0.003;G|0.997	0	0	0	0	0
CPSF3	51692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9580674	9580674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CPSF3-153	NM_016207	exon8	c.C815T	p.S272L	ATGCATCATCTTT	.	142	45	145	0	.	0	0	0	0	0
CCDC121	79635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27850291	27850291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCDC121-68	NM_001142683	exon2	c.G862A	p.E288K	TCTCCTCCTGTAA	.	48	13	49	0	.	0	0	0	0	0
FAM179A	165186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29274646	29274646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM179A-26	NM_199280	exon20	c.G2747A	p.R916Q	ACCCCCGGAAGCC	.	170	16	157	0	.	0	0	0	0	0
C2orf71	388939	broad.mit.edu;bcgsc.ca	37	2	29296788	29296788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C2orf71-91	NM_001029883	exon1	c.A340G	p.I114V	ACGGAATATCCTT	.	233	10	263	1	.	0	0	0	0	0
PLEKHH2	130271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	43984346	43984346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PLEKHH2-92	NM_172069	exon26	c.T3884A	p.V1295D	AGCAAGTCATAGA	.	108	6	102	0	.	0	0	0	0	0
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	45801796	45801796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SRBD1-90	NM_018079	exon8	c.A1139G	p.D380G	TCTTTGTCTTTAG	.	89	21	90	0	.	0	0	0	0	0
INO80B	83444	hgsc.bcm.edu	37	2	74684659	74684659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	INO80B-226	NM_031288	exon5	c.G739A	p.A247T	ACTGCGGCGACCA	.	18	6	5	0	.	0	0	0	0	0
KRCC1	51315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88327571	88327571	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KRCC1-69	NM_016618	exon4	c.C512G	p.S171X	TCCTCTGATTTTT	.	52	20	71	0	.	0	0	0	0	0
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97475185	97475185	+	Silent	SNP	C	C	T	rs187426899		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CNNM4-154	NM_020184	exon7	c.C2259T	p.D753D	GGTGGACGAGACC	.	203	86	178	0	C|0.999;T|0.000	0	0	0	0	0
PDCL3	79031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	101192892	101192892	+	Silent	SNP	C	C	T	rs145184150	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PDCL3-90	NM_024065	exon6	c.C654T	p.D218D	TGAAGACGTGTTG	.	84	14	92	0	C|0.999;T|0.001	0	0	0	0	0
POU3F3	5455	hgsc.bcm.edu	37	2	105472055	105472055	+	Silent	SNP	T	T	C	rs186512421	by1000genomes	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	POU3F3-45	NM_006236	exon1	c.T87C	p.A29A	AGGGGCTGGCGGC	.	7	6	1	0	T|0.299;C|0.701	0	0	0	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682226	106682226	+	Silent	SNP	T	T	C	rs4271786		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C2orf40-90	NM_032411	exon1	c.T6C	p.A2A	CATGGCTGCCTCC	.	11	8	1	0	T|0.765;C|0.235	0	0	0	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682235	106682235	+	Silent	SNP	C	C	G	rs4266035		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C2orf40-90	NM_032411	exon1	c.C15G	p.P5P	CTCCCCCGCGCGG	.	15	10	1	0	C|0.795;G|0.205	0	0	0	0	0
MARCO	8685	broad.mit.edu	37	2	119739941	119739941	+	Missense_Mutation	SNP	G	G	T	rs202171758		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MARCO-95	NM_006770	exon12	c.G1018T	p.G340W	AGCCCCGGGAGTC	.	128	4	114	2	.	0	0	0	0	0
NR4A2	4929	bcgsc.ca	37	2	157185931	157185931	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NR4A2-189	NM_006186	exon3	c.C768A	p.S256S	GGAGGGGGAGCCC	.	67	36	34	1	.	0	0	0	0	0
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160676404	160676404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LY75-90	NM_002349	exon29	c.C3986A	p.T1329N	AGTGGGGTCTTAT	.	54	19	58	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179445121	179445121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TTN-636	NM_001267550	exon317	c.G66985T	p.A22329S	TTCCTGCATCATA	.	93	34	116	0	.	0	0	0	0	0
MYL1	4632	broad.mit.edu	37	2	211179635	211179635	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MYL1-91	NM_079420	exon1	c.G132C	p.K44N	AGTTACCTTAATG	.	196	6	175	0	.	0	0	0	0	0
DNAJB2	3300	broad.mit.edu;bcgsc.ca	37	2	220149572	220149572	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DNAJB2-226	NM_006736	exon9	c.C838G	p.Q280E	GAGGCACAGCACC	.	166	12	161	1	.	0	0	0	0	0
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220354432	220354432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SPEG-383	NM_005876	exon36	c.A8692G	p.T2898A	TCCTCTACTCCTG	.	65	39	55	0	.	0	0	0	0	0
CDS2	8760	ucsc.edu;bcgsc.ca	37	20	5170814	5170814	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CDS2-226	NM_003818	exon13	c.C1272T	p.I424I	CCACATCTTCAAC	.	331	57	304	3	.	0	0	0	0	0
INSM1	3642	hgsc.bcm.edu	37	20	20350152	20350152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	INSM1-91	NM_002196	exon1	c.C1241T	p.P414L	CCGGGCCCGACGA	.	6	4	0	0	.	0	0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29625956	29625956	+	RNA	SNP	G	G	A	rs147809085		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FRG1B-22	.	.	.	.	GACCAAGAGAACA	.	169	5	153	0	.	0	0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29625971	29625971	+	RNA	SNP	C	C	A	rs145033899		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FRG1B-22	.	.	.	.	GGGAACCAGTCTT	.	173	7	156	0	.	0	0	0	0	0
C20orf112	140688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31115669	31115669	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C20orf112-514	NM_001256798	exon2	c.C369T	p.V123V	CACAGCGACCCGC	.	104	27	83	0	.	0	0	0	0	0
WFDC8	90199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44184408	44184408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	WFDC8-90	NM_181510	exon4	c.G377A	p.R126K	CAGCCCCTGTATT	.	94	11	77	0	.	0	0	0	0	0
ARFRP1	10139	bcgsc.ca	37	20	62333492	62333492	+	Silent	SNP	C	C	T	rs112359854		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ARFRP1-291	NM_001134758	exon5	c.G342A	p.A114A	ACCAAACGCCTGC	.	63	22	38	1	.	0	0	0	0	0
SON	6651	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34924819	34924819	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SON-97	NM_032195	exon3	c.G3282A	p.S1094S	GATGTCGTCATAC	.	324	72	263	1	.	0	0	0	0	0
KRTAP10-10	353333	ucsc.edu	37	21	46057625	46057625	+	Silent	SNP	T	T	C	rs55677560	bycluster	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KRTAP10-10-90	NM_181688	exon1	c.T291C	p.P97P	TGTGCCTGTCTGC	.	141	13	120	0	C|1.000;|0.000	0	0	0	0	0
C21orf67	84536	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46355733	46355733	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	.	.	.	.	CCTGATGGGCAGG	.	64	12	51	0	.	0	0	0	0	0
PRODH	5625	hgsc.bcm.edu	37	22	18923745	18923745	+	Missense_Mutation	SNP	G	G	T	rs2008720	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PRODH-289	NM_016335	exon2	c.C56A	p.P19Q	GACAGCGGGACGA	.	5	5	0	0	G|0.457;T|0.543	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	6	6	0	0	C|0.138;G|0.862	0	0	0	0	0
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	29121006	29121006	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CHEK2-1515	NM_001005735	exon5	c.A680T	p.N227I	TTGTTATTCAAAG	.	222	15	167	0	.	0	0	0	0	0
C22orf31	25770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29454817	29454817	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C22orf31-90	NM_015370	exon3	c.G786C	p.Q262H	GTCCCTCTGAGCA	.	112	17	87	0	.	0	0	0	0	0
CSF2RB	1439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37333549	37333549	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CSF2RB-93	NM_000395	exon14	c.C1699G	p.P567A	CAGCCCCCCAGCC	.	65	7	47	0	.	0	0	0	0	0
CACNA1I	8911	broad.mit.edu	37	22	40066230	40066230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CACNA1I-135	NM_021096	exon25	c.G4382A	p.R1461H	AGAAGCGCCGGAG	.	66	15	49	1	.	0	0	0	0	0
ENTHD1	150350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40140106	40140106	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ENTHD1-93	NM_152512	exon7	c.C1402T	p.L468L	GATGCAGCTTGGC	.	155	25	129	0	.	0	0	0	0	0
RRP7A	27341	bcgsc.ca	37	22	42912029	42912029	+	Silent	SNP	G	G	T	rs3201001	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RRP7A-91	NM_015703	exon3	c.C330A	p.P110P	TGGCTTGGGATGA	.	172	8	122	1	G|0.748;T|0.252	0	0	0	0	0
ARPP21	10777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	35730810	35730810	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ARPP21-93	NM_001267619	exon6	c.G418T	p.E140X	AGCCAAGAATACA	.	276	83	236	2	.	0	0	0	0	0
MLH1	4292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	37055929	37055929	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MLH1-2559	NM_000249	exon9	c.G684C	p.L228L	AGAACTGATAGAA	.	115	9	124	0	.	0	0	0	0	0
MAGI1	9223	broad.mit.edu	37	3	65372850	65372851	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MAGI1-661	NM_015520	exon15	c.2467_2468del	p.823_823del	TTGATTTCTCTCT	.	149	12	99	0	.	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	5	5	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	5	5	0	0	G|0.252;C|0.748	0	0	0	0	0
CCDC14	64770	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	123650270	123650270	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCDC14-68	NM_022757	exon10	c.G1551A	p.V517V	TTCAATCACTTTT	.	22	4	31	0	.	0	0	0	0	0
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180372596	180372596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCDC39-72	NM_181426	exon7	c.C884T	p.T295M	TATGCCGTTCTAC	.	95	20	74	0	.	0	0	0	0	0
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	182941972	182941972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MCF2L2-293	NM_015078	exon19	c.G2122C	p.D708H	GAAGATCTTCTTT	.	17	8	16	0	.	0	0	0	0	0
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183975278	183975278	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ECE2-94	NM_014693	exon2	c.C214G	p.L72V	AGTGCCCTGAGCT	.	98	9	93	0	.	0	0	0	0	0
RTP1	132112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	186917619	186917619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RTP1-155	NM_153708	exon2	c.C553T	p.R185W	AACCGGCGGCACC	.	215	26	54	0	.	0	0	0	0	0
TMEM44	93109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	194336340	194336340	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TMEM44-90	NM_001166305	exon8	c.A1011G	p.Q337Q	AAGGGCTTGGGTG	.	129	10	108	0	.	0	0	0	0	0
GRK4	2868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	2990469	2990469	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GRK4-507	NM_182982	exon3	c.G164C	p.S55T	ATAGCAGTCTTTG	.	113	9	80	0	.	0	0	0	0	0
BLOC1S4	55330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6718286	6718286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_018366	exon1	c.G350A	p.G117D	GCGAGGGCGTGCC	.	85	36	32	0	.	0	0	0	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM184B-23	NM_015688	exon13	c.C2350T	p.R784W	CGCCCCGCTCCTG	.	18	12	0	0	G|0.440;A|0.560	0	0	0	0	0
LCORL	254251	hgsc.bcm.edu	37	4	18023336	18023336	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LCORL-90	NM_001166139	exon1	c.C39G	p.A13A	AGCAGCGGCGGCG	.	12	5	2	0	.	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	7	7	0	0	G|0.794;C|0.206	0	0	0	0	0
ATP8A1	10396	broad.mit.edu	37	4	42580310	42580310	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ATP8A1-92	NM_001105529	exon12	c.T1095G	p.V365V	TTTCACAACTTCT	.	167	4	102	0	.	0	0	0	0	0
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47788784	47788784	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CORIN-91	NM_006587	exon3	c.A367T	p.T123S	CATCCGTAGTCCA	.	215	32	147	0	.	0	0	0	0	0
TEC	7006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48172291	48172291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TEC-1004	NM_003215	exon5	c.G428T	p.C143F	TTTTCACATCCGG	.	194	42	185	0	.	0	0	0	0	0
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79440544	79440544	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FRAS1-68	NM_025074	exon67	c.C10449G	p.I3483M	CTACATCTATGTG	.	104	42	93	0	.	0	0	0	0	0
GK2	2712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	80327936	80327936	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GK2-94	NM_033214	exon1	c.C1419T	p.S473S	TTCAAGGCTCCAA	.	262	27	170	0	.	0	0	0	0	0
COQ2	27235	hgsc.bcm.edu	37	4	84205872	84205872	+	Missense_Mutation	SNP	C	C	A	rs6818847	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	COQ2-92	NM_015697	exon1	c.G196T	p.V66L	GTGCCACAGCCCG	.	7	7	0	0	C|0.324;A|0.676	0	0	0	0	0
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	90872784	90872784	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MMRN1-94	NM_007351	exon7	c.G3147A	p.P1049P	GCATCCGTGCCAA	.	145	26	128	0	.	0	0	0	0	0
C4orf21	55345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	113505163	113505163	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C4orf21-90	NM_018392	exon15	c.A4269G	p.P1423P	ATAAAGTGGTATC	.	66	18	56	0	.	0	0	0	0	0
QRFPR	84109	broad.mit.edu	37	4	122254171	122254171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	QRFPR-90	NM_198179	exon4	c.G602A	p.C201Y	TCTAAGCAGCAGA	.	212	8	189	0	.	0	0	0	0	0
GLRB	2743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	158074152	158074152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GLRB-92	NM_000824	exon9	c.G1187T	p.S396I	ATATTAGCACTTT	.	81	13	118	0	.	0	0	0	0	0
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169369890	169369890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DDX60L-69	NM_001012967	exon9	c.T1037G	p.V346G	CCAAAAACGTTTA	.	260	37	210	0	.	0	0	0	0	0
ACSL1	2180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185686036	185686036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ACSL1-92	NM_001995	exon15	c.G1403A	p.C468Y	GTCAGGCAGCACC	.	157	30	222	0	.	0	0	0	0	0
IRX4	50805	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1879672	1879672	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	IRX4-226	NM_016358	exon4	c.G682T	p.E228X	CCCCCTCCTCCTC	.	145	58	139	1	.	0	0	0	0	0
FAM173B	134145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	10239180	10239180	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM173B-91	NM_199133	exon2	c.T305A	p.I102N	CTCACAATGCGTC	.	38	17	46	0	.	0	0	0	0	0
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	56155597	56155597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MAP3K1-956	NM_005921	exon3	c.C689T	p.A230V	TAGCAGCTGAGTC	.	128	15	222	0	.	0	0	0	0	0
RASGRF2	5924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	80409739	80409739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RASGRF2-725	NM_006909	exon15	c.G2470T	p.A824S	CAAAAAGGTATTA	.	42	14	55	0	.	0	0	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	4	4	0	0	T|0.046;G|0.950	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	10	10	0	0	G|0.980;C|0.020	0	0	0	0	0
AFF4	27125	hgsc.bcm.edu	37	5	132232343	132232343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	AFF4-229	NM_014423	exon11	c.C1979A	p.P660H	GAAGGAGGAAGGC	.	80	4	120	0	.	0	0	0	0	0
HARS2	23438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140075331	140075331	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HARS2-90	NM_012208	exon6	c.C534T	p.D178D	TTTTGACATTGCT	.	148	22	190	0	.	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	92	27	3	0	.	0	0	0	0	0
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140797965	140797965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PCDHGB7-29	NM_018927	exon1	c.T539C	p.L180S	TCTCATTGGTGGA	.	122	12	122	0	.	0	0	0	0	0
FLT4	2324	broad.mit.edu;bcgsc.ca	37	5	180046752	180046752	+	Missense_Mutation	SNP	C	C	T	rs144045237	alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FLT4-1490	NM_182925	exon18	c.G2560A	p.G854S	AGGCGCCGTAGCC	.	242	15	187	1	.	0	0	0	0	0
OR2Y1	134083	bcgsc.ca	37	5	180166250	180166250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR2Y1-68	NM_001001657	exon1	c.G809T	p.G270V	AATTTTCCCTCAC	.	33	9	44	1	.	0	0	0	0	0
TXNDC5	81567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7904880	7904880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TXNDC5-90	NM_030810	exon2	c.G340A	p.V114I	CATAGACTTTGGC	.	76	13	86	0	.	0	0	0	0	0
TRIM39	56658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30297383	30297383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TRIM39-161	NM_021253	exon3	c.G289A	p.V97I	CAGGCCGTCAAGC	.	155	13	139	0	.	0	0	0	0	0
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31927812	31927812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SKIV2L-290	NM_006929	exon3	c.C152T	p.A51V	CTTGTGCCCCAGA	.	75	11	81	0	.	0	0	0	0	0
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31927815	31927815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SKIV2L-290	NM_006929	exon3	c.C155A	p.P52Q	GTGCCCCAGATCT	.	73	10	81	0	.	0	0	0	0	0
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31928995	31928995	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SKIV2L-290	NM_006929	exon8	c.A621G	p.G207G	TCCTGGACTACTA	.	147	15	133	0	.	0	0	0	0	0
HLA-DOB	3112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32782314	32782314	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HLA-DOB-91	NM_002120	exon3	c.C426T	p.H142H	AGAGCAGTGCAGC	.	137	18	134	0	.	0	0	0	0	0
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41057410	41057410	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NFYA-226	NM_002505	exon5	c.C402G	p.I134M	CATCATCCAGCAG	.	233	33	178	0	.	0	0	0	0	0
CNPY3	10695	broad.mit.edu	37	6	42897358	42897360	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CNPY3-69	NM_006586	exon1	c.50_52del	p.17_18del	TTCCCTTGCTGCT	.	85	9	34	0	.	0	0	0	0	0
CUL9	23113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43181477	43181477	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CUL9-529	NM_015089	exon29	c.C5515G	p.P1839A	CCTGGGCCCCAGC	.	69	37	52	1	.	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51890570	51890570	+	Silent	SNP	G	G	A	rs147584295	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PKHD1-603	NM_170724	exon32	c.C4038T	p.N1346N	GCTCACGTTGCCC	.	134	61	148	0	G|0.999;A|0.001	0	0	0	0	0
SERINC1	57515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	122772896	122772925	+	Frame_Shift_Del	DEL	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SERINC1-91	NM_020755	exon7	c.760_763del	p.254_255del	GTTGTGATTCCTA	.	82	12	81	0	.	0	0	0	0	0
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	129465098	129465098	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LAMA2-162	NM_000426	exon5	c.A692C	p.E231A	CTCCAGAACTGCT	.	71	11	59	0	.	0	0	0	0	0
MED23	9439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	131914268	131914268	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MED23-24	NM_015979	exon25	c.G3294A	p.W1098X	GAATCTCCAGTCA	.	188	86	209	0	.	0	0	0	0	0
RADIL	55698	hgsc.bcm.edu	37	7	4876135	4876135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RADIL-994	NM_018059	exon3	c.C637T	p.R213C	CTGTGCGGCGCAA	.	49	7	8	0	.	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	15	10	0	0	G|0.411;T|0.589	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	27	12	3	0	G|0.456;C|0.544	0	0	0	0	0
C7orf31	136895	broad.mit.edu;bcgsc.ca	37	7	25208036	25208036	+	Silent	SNP	G	G	A	rs148188847		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C7orf31-90	NM_138811	exon3	c.C183T	p.G61G	TTCAGCGCCCCAA	.	221	12	167	1	G|1.000;A|0.000	0	0	0	0	0
HOXA4	3201	hgsc.bcm.edu	37	7	27170145	27170145	+	Missense_Mutation	SNP	T	T	G	rs6944345		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HOXA4-153	NM_002141	exon1	c.A208C	p.T70P	AGGCAGTGGGCTC	.	5	5	0	0	T|0.037;G|0.963	0	0	0	0	0
ADCYAP1R1	117	broad.mit.edu;bcgsc.ca	37	7	31123819	31123819	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ADCYAP1R1-91	NM_001118	exon7	c.T392A	p.F131Y	ATTACTTTGATGC	.	219	7	152	0	.	0	0	0	0	0
RFC2	5982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73649931	73649931	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RFC2-229	NM_181471	exon10	c.C885T	p.I295I	GCCAATGATATCT	.	168	55	114	0	.	0	0	0	0	0
TRRAP	8295	broad.mit.edu	37	7	98529263	98529263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TRRAP-923	NM_001244580	exon26	c.C3827T	p.T1276M	GTGTCACGGTGAT	.	119	7	121	2	.	0	0	0	0	0
MOSPD3	64598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100212602	100212602	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MOSPD3-92	NM_001040098	exon5	c.T624A	p.P208P	GCTGCCTCAAGTC	.	100	20	75	0	.	0	0	0	0	0
CPED1	79974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	120768496	120768496	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001105533	exon10	c.A1363T	p.M455L	TCAATTATGACTT	.	306	21	270	0	.	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PODXL-136	NM_001018111	exon1	c.84_89del	p.28_30del	TGGGAGGGCGACG	.	18	8	0	0	.	0	0	0	0	0
FAM115A	9747	broad.mit.edu	37	7	143556212	143556212	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM115A-68	NM_001206938	exon7	c.C2210A	p.S737X	TGCACTGACTCCA	.	410	19	238	1	.	0	0	0	0	0
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2040266	2040266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MYOM2-95	NM_003970	exon16	c.C1921A	p.L641M	GAGGACCTGCTGG	.	265	126	218	1	.	0	0	0	0	0
SGK223	0	broad.mit.edu	37	8	8239069	8239069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001080826	exon1	c.G189T	p.R63S	CTCAGGCCTGGGA	.	92	9	44	1	.	0	0	0	0	0
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139793209	139793209	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	COL22A1-103	NM_152888	exon13	c.G1611T	p.L537L	GCCGGGCAGGCCC	.	76	39	33	0	.	0	0	0	0	0
FAM83H	286077	hgsc.bcm.edu	37	8	144808866	144808866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM83H-92	NM_198488	exon5	c.G2765A	p.R922H	CTCCTGCGCTCCG	.	34	12	6	0	.	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	12	8	0	0	C|0.740;T|0.260	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	22	15	5	0	A|0.738;G|0.262	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	56	40	0	0	G|0.246;A|0.754	0	0	0	0	0
ERMP1	79956	broad.mit.edu	37	9	5801292	5801292	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ERMP1-69	NM_024896	exon11	c.1951delA	p.T651fs	GCATGGTTTTTTT	.	675	8	142	0	.	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	91	86	2	0	G|0.572;C|0.428	0	0	0	0	0
UHRF2	115426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	6460639	6460639	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	UHRF2-721	NM_152896	exon4	c.G711C	p.L237F	CATTTTGAAATGG	.	85	11	67	0	.	0	0	0	0	0
UHRF2	115426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	6460721	6460721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	UHRF2-721	NM_152896	exon4	c.G793C	p.D265H	TGGTTTGATGCAG	.	110	12	87	0	.	0	0	0	0	0
TAF1L	138474	hgsc.bcm.edu	37	9	32633584	32633584	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TAF1L-870	NM_153809	exon1	c.1994delA	p.K665fs	TTGGCCTTTTTTT	.	1628	13	263	1	.	0	0	0	0	0
AQP7	364	ucsc.edu	37	9	33385287	33385287	+	Missense_Mutation	SNP	T	T	C	rs74557595		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	AQP7-90	NM_001170	exon8	c.A745G	p.N249D	CCCCATTGCTGCA	.	34	10	36	3	.	0	0	0	0	0
HRCT1	646962	broad.mit.edu	37	9	35906348	35906350	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HRCT1-22	NM_001039792	exon1	c.64_66del	p.22_22del	GCGGTCCTGCTGC	.	431	10	89	0	.	0	0	0	0	0
SPATA31A6	389730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	43627272	43627272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001145196	exon4	c.T1415C	p.L472P	TGGGACAGGGGCT	.	95	20	106	0	.	0	0	0	0	0
TRPM3	80036	broad.mit.edu;bcgsc.ca	37	9	73457979	73457979	+	Missense_Mutation	SNP	G	G	C	rs146744968	alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TRPM3-521	NM_001007471	exon5	c.C741G	p.C247W	TATGGTGCATATC	.	123	6	83	0	G|1.000;A|0.000	0	0	0	0	0
GADD45G	10912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	92220393	92220393	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GADD45G-514	NM_006705	exon2	c.C100T	p.Q34X	TCGGCGCAGCGTC	.	83	37	54	0	.	0	0	0	0	0
BAAT	570	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104124861	104124861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	BAAT-228	NM_001127610	exon4	c.C1106A	p.S369Y	AGAGGAGAATAGG	.	194	79	173	1	.	0	0	0	0	0
OR13C3	138803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107298937	107298937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR13C3-69	NM_001001961	exon1	c.T158C	p.I53T	ATCTCAATCTTTG	.	183	32	168	1	.	0	0	0	0	0
DFNB31	25861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117185706	117185706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DFNB31-95	NM_001173425	exon7	c.C1514T	p.A505V	TGCCGCGCCTTCA	.	187	47	166	0	.	0	0	0	0	0
TRIM32	22954	ucsc.edu	37	9	119460913	119460913	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TRIM32-650	NM_012210	exon2	c.C892G	p.P298A	AAGAAGCCCCGGA	.	85	9	73	2	.	0	0	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126136139	126136139	+	Missense_Mutation	SNP	C	C	T	rs73571431		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CRB2-91	NM_173689	exon10	c.C3329T	p.T1110M	GTCACACGCACCC	.	12	4	0	0	C|0.875;T|0.125	0	0	0	0	0
USP20	10868	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132637739	132637739	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	USP20-658	NM_001008563	exon20	c.C2199T	p.T733T	CCAGACCTTCCTC	.	122	16	99	1	.	0	0	0	0	0
ABL1	25	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133760173	133760173	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ABL1-3810	NM_007313	exon11	c.C2553T	p.H851H	CCCCCACAAGGAA	.	171	51	168	0	.	0	0	0	0	0
SARDH	1757	broad.mit.edu	37	9	136577795	136577795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SARDH-90	NM_007101	exon10	c.C1274A	p.A425D	CAGTGGGCCAGCT	.	53	8	36	2	.	0	0	0	0	0
MAGEB4	4115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30261199	30261199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MAGEB4-131	NM_002367	exon1	c.G947A	p.G316E	GAGCTGGAGCCCG	.	60	19	63	0	.	0	0	0	0	0
FAM47A	158724	bcgsc.ca	37	X	34148842	34148842	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM47A-134	NM_203408	exon1	c.C1554T	p.R518R	CTCCGAGCGGAGA	.	103	10	101	1	.	0	0	0	0	0
FAM47A	158724	bcgsc.ca	37	X	34148844	34148844	+	Missense_Mutation	SNP	G	G	C	rs17855514		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM47A-134	NM_203408	exon1	c.C1552G	p.R518G	CCGAGCGGAGACT	.	107	13	101	3	.	0	0	0	0	0
PIN4	5303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71417263	71417263	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PIN4-130	NM_006223	exon4	c.C358G	p.Q120E	CCATTTCAAGAAG	.	442	86	350	0	.	0	0	0	0	0
MAGEE1	57692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	75648451	75648451	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MAGEE1-262	NM_020932	exon1	c.C128G	p.S43X	CAGGCTCAGACGT	.	336	19	247	0	.	0	0	0	0	0
SPANXN3	139067	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	142605206	142605206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SPANXN3-132	NM_001009609	exon1	c.C14A	p.T5N	CTGGAAGTTGGCT	.	95	23	111	2	.	0	0	0	0	0
HNRNPM	4670	broad.mit.edu	37	19	8550873	8550874	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.1561_1562insA	p.A521fs	GGCCCTGCCATCG	.	167	10	39	0	.	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KRTAP10-6-90	NM_198688	exon1	c.147_148insCAGCTGCTGCGCCCC	p.P49delinsPSCCAP	GGGGGCCGGGGCG	.	99	9	34	0	.	0	0	0	0	0
RHBDD3	25807	broad.mit.edu	37	22	29661518	29661519	+	Frame_Shift_Ins	INS	-	-	C	rs150836859	by1000genomes	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RHBDD3-91	NM_012265	exon3	c.98_99insG	p.A33fs	GGGCCGGCCCCCA	.	290	11	177	0	.	0	0	0	0	0
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	134073007	134073008	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NUP214-1131	NM_005085	exon29	c.4126_4127insC	p.A1376fs	TTTACTGCCCCCC	.	130	14	147	0	.	0	0	0	0	0
C11orf96	387763	broad.mit.edu	37	11	43965005	43965006	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C11orf96-46	.	.	.	p.L301M	CTCGCCCTGGCCC	.	15	1	8	0	.	0	0	0	0	0
