Extract Name	Hybridization Name	Data File	Comment [TCGA Archive Name]	Comment [TCGA Data Level]	Comment [TCGA Include for Analysis]	Protocol REF	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
TCGA-A7-A26J-01B-02D-A275-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.hg18.seg.txt	broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.2023.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2016012800	BRCA-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2016012800.0.0	yes
TCGA-A7-A13G-01B-04D-A22Q-01	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.hg18.seg.txt	broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.2023.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2016012800	BRCA-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2016012800.0.0	yes
TCGA-A7-A26E-01B-06D-A275-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.hg18.seg.txt	broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.2023.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2016012800	BRCA-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2016012800.0.0	yes
TCGA-A7-A0DC-01B-04D-A22Q-01	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.hg18.seg.txt	broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.2023.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2016012800	BRCA-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2016012800.0.0	yes
TCGA-AC-A3OD-01B-06D-A22Q-01	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.hg18.seg.txt	broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.216.2023.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2016012800	BRCA-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2016012800.0.0	yes
TCGA-AC-A2QH-01B-04D-A22Q-01	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.hg18.seg.txt	broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.177.2023.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2016012800	BRCA-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2016012800.0.0	yes
TCGA-A7-A26F-01B-04D-A22Q-01	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.hg18.seg.txt	broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.2023.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2016012800	BRCA-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2016012800.0.0	yes
