Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALLC	0	genome.wustl.edu	37	2	3721691	3721691	+	Silent	SNP	T	T	C			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	2	3721691	3721691	T	C	SNP	ALLC	ENST00000252505	human	ensembl	69_37n	+1	known	silent	c.60	p.F20	1.000	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360	139	0	0.00	96	16	14.29	-	-	-
C12orf68	0	genome.wustl.edu	37	12	48578409	48578410	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	12	48578409	48578410	-	G	INS	C12orf68	ENST00000316554	human	ensembl	69_37n	+1	known	frame_shift_ins	c.504_505	p.D170fs	0.336:0.295	NULL	NULL	-	no_errors	C12orf68	HGNC	ENSG00000177875	18	0	0.00	15	2	11.76	-	-	-
CDR2	0	genome.wustl.edu	37	16	22359093	22359093	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	16	22359093	22359093	A	-	DEL	CDR2	ENST00000268383	human	ensembl	69_37n	-1	known	frame_shift_del	c.558	p.Q187fs	0.031	NULL	NULL	-	no_errors	CDR2	HGNC	ENSG00000140743	131	0	0.00	107	74	39.15	-	-	-
FAM53C	0	genome.wustl.edu	37	5	137682473	137682474	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	5	137682473	137682474	-	C	INS	FAM53C	ENST00000239906	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1004_1005	p.P338fs	1.000:1.000	NULL	NULL	-	no_errors	FAM53C	HGNC	ENSG00000120709	55	0	0.00	25	4	13.79	-	-	-
FAM73A	0	genome.wustl.edu	37	1	78269078	78269078	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	1	78269078	78269078	A	T	SNP	FAM73A	ENST00000370791	human	ensembl	69_37n	+1	known	missense	c.497	p.Q166L	1.000	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73A	HGNC	ENSG00000180488	81	0	0.00	61	11	15.28	-	-	-
HLA-DQB1	0	genome.wustl.edu	37	6	32632633	32632633	+	Silent	SNP	C	C	T			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	6	32632633	32632633	C	T	SNP	HLA-DQB1	ENST00000374943	human	ensembl	69_37n	-1	known	silent	c.321	p.L107	0.893	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DQB1	HGNC	ENSG00000179344	130	0	0.00	88	32	26.67	-	-	-
IGKV3-7	0	genome.wustl.edu	37	2	89278093	89278095	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	2	89278093	89278095	GCT	-	DEL	IGKV3-7	ENST00000390247	human	ensembl	69_37n	-1	known	in_frame_del	c.242_240	p.A81in_frame_del	0.021:0.031:0.076	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGKV3-7	HGNC	ENSG00000243063	273	0	0.00	226	200	46.95	-	-	-
PRRC2A	0	genome.wustl.edu	37	6	31600113	31600114	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	6	31600113	31600114	GG	-	DEL	PRRC2A	ENST00000376007	human	ensembl	69_37n	+1	known	frame_shift_del	c.3663_3664	p.G1224fs	0.000:0.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469	19	0	0.00	3	2	40.00	-	-	-
RDH13	0	genome.wustl.edu	37	19	55556534	55556534	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	19	55556534	55556534	C	-	DEL	RDH13	ENST00000415061	human	ensembl	69_37n	-1	known	frame_shift_del	c.904	p.D302fs	1.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH13	HGNC	ENSG00000160439	25	0	0.00	14	7	33.33	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037856	10037856	+	RNA	SNP	G	G	A			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	Y	10037856	10037856	G	A	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	15	0	0.00	13	5	27.78	-	-	-
S1PR5	0	genome.wustl.edu	37	19	10625045	10625046	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	19	10625045	10625046	-	C	INS	S1PR5	ENST00000333430	human	ensembl	69_37n	-1	known	frame_shift_ins	c.643_642	p.I214fs	0.991:0.887	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_EDG8_S1P_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	S1PR5	HGNC	ENSG00000180739	9	0	0.00	8	8	50.00	-	-	-
SEMA6D	0	genome.wustl.edu	37	15	48056083	48056083	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	15	48056083	48056083	G	A	SNP	SEMA6D	ENST00000316364	human	ensembl	69_37n	+1	known	missense	c.784	p.D262N	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6D	HGNC	ENSG00000137872	390	1	0.26	257	31	10.76	-	-	-
SSPO	0	genome.wustl.edu	37	7	149474082	149474083	+	RNA	INS	-	-	G			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	7	149474082	149474083	-	G	INS	SSPO	ENST00000262089	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	15	0	0.00	14	5	26.32	-	-	-
TLN2	0	genome.wustl.edu	37	15	62999439	62999439	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	15	62999439	62999439	T	C	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	+1	known	missense	c.2159	p.V720A	1.000	pfam_ILWEQ	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	83	0	0.00	73	10	11.90	-	-	-
TMC2	0	genome.wustl.edu	37	20	2582823	2582823	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	20	2582823	2582823	G	A	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	+1	known	missense	c.1289	p.R430H	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	846	0	0.00	684	96	12.31	-	-	-
TMEM132B	0	genome.wustl.edu	37	12	125834676	125834676	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	12	125834676	125834676	C	A	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	+1	known	nonsense	c.731	p.S244*	0.085	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	199	0	0.00	126	17	11.89	-	-	-
TMPRSS7	0	genome.wustl.edu	37	3	111766802	111766802	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	3	111766802	111766802	G	A	SNP	TMPRSS7	ENST00000419127	human	ensembl	69_37n	+1	known	missense	c.569	p.S190N	0.472	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS7	HGNC	ENSG00000176040	145	0	0.00	85	11	11.34	-	-	-
XIAP	0	genome.wustl.edu	37	X	123019870	123019870	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	X	123019870	123019870	T	A	SNP	XIAP	ENST00000355640	human	ensembl	69_37n	+1	known	missense	c.358	p.Y120N	0.195	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	XIAP	HGNC	ENSG00000101966	66	0	0.00	70	13	15.66	-	-	-
ZBTB7C	0	genome.wustl.edu	37	18	45566518	45566519	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	18	45566518	45566519	-	C	INS	ZBTB7C	ENST00000332053	human	ensembl	69_37n	-1	known	frame_shift_ins	c.961_960	p.P320fs	1.000:0.989	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828	63	0	0.00	42	5	10.64	-	-	-
