Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AASS	0	genome.wustl.edu	37	7	121756793	121756793	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	7	121756793	121756793	G	A	SNP	AASS	ENST00000393376	human	ensembl	69_37n	-1	known	missense	c.788	p.T263M	1.000	pfam_AlaDH/PNT_NAD(H)-bd	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311	58	0	0.00	92	19	17.12	-	-	-
ANKZF1	0	genome.wustl.edu	37	2	220100548	220100548	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	220100548	220100548	G	A	SNP	ANKZF1	ENST00000323348	human	ensembl	69_37n	+1	known	missense	c.1922	p.R641H	0.015	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKZF1	HGNC	ENSG00000163516	170	0	0.00	79	10	11.11	-	-	-
ARMC7	0	genome.wustl.edu	37	17	73106586	73106586	+	Silent	SNP	C	C	T			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	17	73106586	73106586	C	T	SNP	ARMC7	ENST00000245543	human	ensembl	69_37n	+1	known	silent	c.120	p.L40	0.996	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC7	HGNC	ENSG00000125449	94	0	0.00	60	12	16.67	-	-	-
CEP104	0	genome.wustl.edu	37	1	3750452	3750452	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	3750452	3750452	G	A	SNP	CEP104	ENST00000378230	human	ensembl	69_37n	-1	known	missense	c.1633	p.R545C	0.945	superfamily_ARM-type_fold	superfamily_Galactose-bd-like,superfamily_ARM-type_fold	-	no_errors	CEP104	HGNC	ENSG00000116198	110	0	0.00	93	36	27.91	-	-	-
ENSG00000211459	0	genome.wustl.edu	37	MT	1461	1461	+	RNA	SNP	A	A	G			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	MT	1461	1461	A	G	SNP	ENSG00000211459	ENST00000389680	human	ensembl	69_37n	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	J01415.24	Clone_based_ensembl_gene	ENSG00000211459	15	0	0.00	3	2	40.00	-	-	-
FAM47B	0	genome.wustl.edu	37	X	34961961	34961961	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	X	34961961	34961961	C	G	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	+1	known	missense	c.1013	p.T338S	0.712	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	87	0	0.00	67	27	28.72	-	-	-
IL2RG	0	genome.wustl.edu	37	X	70330750	70330750	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	X	70330750	70330750	T	A	SNP	IL2RG	ENST00000374202	human	ensembl	69_37n	-1	known	missense	c.266	p.Y89F	0.426	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	pfam_IL6_recept-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RG	HGNC	ENSG00000147168	120	0	0.00	114	47	29.19	-	-	-
LCT	0	genome.wustl.edu	37	2	136561583	136561583	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	136561583	136561583	C	T	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.4580	p.G1527E	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	128	0	0.00	144	24	14.29	-	-	-
LRRC7	0	genome.wustl.edu	37	1	70505012	70505012	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	70505012	70505012	G	T	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	+1	known	missense	c.3391	p.V1131F	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	45	0	0.00	21	7	25.00	-	-	-
MLL3	0	genome.wustl.edu	37	7	151859457	151859457	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	7	151859457	151859457	T	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.11205	p.K3735fs	0.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	97	0	0.00	167	32	15.69	-	-	-
MSX2	0	genome.wustl.edu	37	5	174156285	174156285	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	5	174156285	174156285	C	T	SNP	MSX2	ENST00000239243	human	ensembl	69_37n	+1	known	missense	c.503	p.S168F	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MSX2	HGNC	ENSG00000120149	89	0	0.00	45	14	23.73	-	-	-
MTUS2	0	genome.wustl.edu	37	13	29933490	29933490	+	Silent	SNP	G	G	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	13	29933490	29933490	G	A	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	+1	known	silent	c.3027	p.L1009	0.998	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	35	0	0.00	19	10	34.48	-	-	-
MUC4	0	genome.wustl.edu	37	3	195489057	195489057	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	195489057	195489057	C	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.14413	p.D4805Y	0.395	pfam_VWF_type-D,smart_VWF_type-D	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	29	0	0.00	32	6	15.79	-	-	-
MYH8	0	genome.wustl.edu	37	17	10318470	10318470	+	Silent	SNP	A	A	G			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	17	10318470	10318470	A	G	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	silent	c.768	p.G256	0.725	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	114	0	0.00	126	54	29.83	-	-	-
MYO7A	0	genome.wustl.edu	37	11	76900501	76900501	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	11	76900501	76900501	G	A	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	+1	known	missense	c.3616	p.E1206K	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	146	0	0.00	93	21	18.42	-	-	-
NLRC4	0	genome.wustl.edu	37	2	32475353	32475353	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	32475353	32475353	G	A	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	missense	c.1580	p.P527L	0.130	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	129	0	0.00	168	53	23.98	-	-	-
PHEX	0	genome.wustl.edu	37	X	22231059	22231059	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	X	22231059	22231059	G	A	SNP	PHEX	ENST00000379374	human	ensembl	69_37n	+1	known	missense	c.1684	p.G562R	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	PHEX	HGNC	ENSG00000102174	112	0	0.00	161	39	19.50	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	55	0	0.00	95	21	18.10	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952139	178952139	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	178952139	178952139	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3194	p.H1065L	1.000	smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	47	0	0.00	69	21	23.33	-	-	-
PLCXD2	0	genome.wustl.edu	37	3	111439672	111439672	+	RNA	SNP	G	G	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	111439672	111439672	G	A	SNP	PLCXD2	ENST00000472215	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.122	-	-	-	no_errors	PLCXD2	HGNC	ENSG00000240891	139	0	0.00	170	46	21.30	-	-	-
PSMD1	0	genome.wustl.edu	37	2	231937097	231937098	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	231937097	231937098	-	A	INS	PSMD1	ENST00000308696	human	ensembl	69_37n	+1	known	frame_shift_ins	c.849_850	p.T283fs	0.998:1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	153	0	0.00	153	33	17.74	-	-	-
RASA2	0	genome.wustl.edu	37	3	141292064	141292064	+	Splice_Site	SNP	G	G	T			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	141292064	141292064	G	T	SNP	RASA2	ENST00000452898	human	ensembl	69_37n	+1	known	splice_site	c.1359+1	e13+1	1.000	-	-	-	no_errors	RASA2	HGNC	ENSG00000155903	53	0	0.00	40	10	20.00	-	-	-
RBM39	0	genome.wustl.edu	37	20	34302208	34302208	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	20	34302208	34302208	G	T	SNP	RBM39	ENST00000448303	human	ensembl	69_37n	-1	novel	nonsense	c.546	p.C182*	1.000	tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_start_codon:pseudogene:no_stop_codon	RBM39	HGNC	ENSG00000131051	122	1	0.81	139	34	19.54	-	-	-
RPLP0P2	0	genome.wustl.edu	37	11	61405221	61405224	+	RNA	DEL	AAAG	AAAG	-			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	AAAG	AAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	11	61405221	61405224	AAAG	-	DEL	RPLP0P2	ENST00000496593	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors	RPLP0P2	HGNC	ENSG00000243742	12	0	0.00	6	3	33.33	-	-	-
RUNX1	0	genome.wustl.edu	37	21	36252995	36252995	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	21	36252995	36252995	C	-	DEL	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_del	c.367	p.D123fs	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	89	0	0.00	142	30	17.34	-	-	-
SEPT7P2	0	genome.wustl.edu	37	7	45776474	45776474	+	RNA	SNP	C	C	T			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	7	45776474	45776474	C	T	SNP	SEPT7P2	ENST00000338231	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEPT7P2	HGNC	ENSG00000214765	11	0	0.00	21	33	61.11	-	-	-
SIPA1L2	0	genome.wustl.edu	37	1	232607134	232607134	+	Silent	SNP	G	G	C			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	232607134	232607134	G	C	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	silent	c.2226	p.T742	0.001	pfam_Rap_GAP,pfscan_Rap_GAP	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	125	0	0.00	149	61	29.05	-	-	-
SLC29A4	0	genome.wustl.edu	37	7	5327487	5327487	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	7	5327487	5327487	G	A	SNP	SLC29A4	ENST00000297195	human	ensembl	69_37n	+1	known	missense	c.40	p.V14M	0.072	NULL	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638	48	0	0.00	29	5	14.71	-	-	-
SPEN	0	genome.wustl.edu	37	1	16248819	16248820	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	16248819	16248820	TT	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	+1	known	frame_shift_del	c.1825_1826	p.F609fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	205	0	0.00	186	50	20.92	-	-	-
SUGP1	0	genome.wustl.edu	37	19	19387471	19387471	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	19	19387471	19387471	G	A	SNP	SUGP1	ENST00000247001	human	ensembl	69_37n	-1	known	missense	c.1924	p.R642W	0.689	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP1	HGNC	ENSG00000105705	170	0	0.00	140	29	17.16	-	-	-
TBX4	0	genome.wustl.edu	37	17	59560293	59560293	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	17	59560293	59560293	C	T	SNP	TBX4	ENST00000393853	human	ensembl	69_37n	+1	known	nonsense	c.1057	p.R353*	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075	46	0	0.00	48	10	17.24	-	-	-
TMEM132B	0	genome.wustl.edu	37	12	125834884	125834884	+	Silent	SNP	T	T	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	12	125834884	125834884	T	A	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	+1	known	silent	c.939	p.T313	0.977	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	47	0	0.00	31	9	22.50	-	-	-
TMEM247	0	genome.wustl.edu	37	2	46707884	46707884	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	46707884	46707884	A	G	SNP	TMEM247	ENST00000434431	human	ensembl	69_37n	+1	known	missense	c.458	p.Q153R	0.238	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	TMEM247	HGNC	ENSG00000187600	32	0	0.00	24	5	17.24	-	-	-
TMEM247	0	genome.wustl.edu	37	2	46707885	46707885	+	Silent	SNP	A	A	G			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	46707885	46707885	A	G	SNP	TMEM247	ENST00000434431	human	ensembl	69_37n	+1	known	silent	c.459	p.Q153	0.091	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	TMEM247	HGNC	ENSG00000187600	32	0	0.00	25	5	16.67	-	-	-
TTN	0	genome.wustl.edu	37	2	179456460	179456460	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	179456460	179456460	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.52382	p.T17461N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	188	0	0.00	174	40	18.69	-	-	-
ZBTB25	0	genome.wustl.edu	37	14	64954287	64954287	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	14	64954287	64954287	G	A	SNP	ZBTB25	ENST00000261683	human	ensembl	69_37n	-1	known	missense	c.662	p.P221L	0.443	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB25	HGNC	ENSG00000089775	241	1	0.41	134	43	24.29	-	-	-
ZP4	0	genome.wustl.edu	37	1	238050144	238050144	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	238050144	238050144	C	T	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	missense	c.766	p.E256K	0.993	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	147	0	0.00	242	37	13.26	-	-	-
