Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCC6	0	genome.wustl.edu	37	16	16255417	16255417	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	16	16255417	16255417	G	A	SNP	ABCC6	ENST00000205557	human	ensembl	69_37n	-1	known	missense	c.3511	p.L1171F	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262	22	0	0.00	13	18	58.06	-	-	-
ARFGEF1	0	genome.wustl.edu	37	8	68130367	68130367	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	8	68130367	68130367	C	T	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	missense	c.4345	p.E1449K	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	27	0	0.00	46	13	22.03	-	-	-
ATN1	0	genome.wustl.edu	37	12	7045891	7045892	+	In_Frame_Ins	INS	-	-	CAG			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	12	7045891	7045892	-	CAG	INS	ATN1	ENST00000356654	human	ensembl	69_37n	+1	known	in_frame_ins	c.1461_1462	p.491in_frame_insQ	0.002:0.834	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	31	0	0.00	46	7	13.21	-	-	-
CCL13	0	genome.wustl.edu	37	17	32683553	32683554	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	32683553	32683554	-	C	INS	CCL13	ENST00000225844	human	ensembl	69_37n	+1	known	frame_shift_ins	c.8_9	p.S4fs	0.324:0.310	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL13	HGNC	ENSG00000181374	122	0	0.00	74	42	36.21	-	-	-
CDH1	0	genome.wustl.edu	37	16	68842417	68842418	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	16	68842417	68842418	-	G	INS	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_ins	c.478_479	p.P160fs	1.000:0.999	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	65	0	0.00	16	17	51.52	-	-	-
DLGAP4	0	genome.wustl.edu	37	20	35060343	35060343	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	20	35060343	35060343	C	T	SNP	DLGAP4	ENST00000339266	human	ensembl	69_37n	+1	known	missense	c.223	p.H75Y	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	58	0	0.00	27	19	41.30	-	-	-
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	RNA	INS	-	-	GCA			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	141107536	141107537	-	GCA	INS	FAM157B	ENST00000446912	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.033:0.036	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	25	0	0.00	47	44	48.35	-	-	-
GIGYF2	0	genome.wustl.edu	37	2	233655446	233655446	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	2	233655446	233655446	C	T	SNP	GIGYF2	ENST00000373566	human	ensembl	69_37n	+1	known	nonsense	c.817	p.R273*	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120	91	0	0.00	64	76	54.29	-	-	-
GOLGA8E	0	genome.wustl.edu	37	15	23444016	23444016	+	RNA	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	15	23444016	23444016	G	A	SNP	GOLGA8E	ENST00000526079	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	GOLGA8E	HGNC	ENSG00000175676	32	0	0.00	12	15	55.56	-	-	-
GPR61	0	genome.wustl.edu	37	1	110086977	110086977	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	110086977	110086977	G	A	SNP	GPR61	ENST00000404129	human	ensembl	69_37n	+1	known	missense	c.1333	p.A445T	0.617	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR61	HGNC	ENSG00000156097	17	0	0.00	17	7	29.17	-	-	-
GRIA1	0	genome.wustl.edu	37	5	153143997	153143997	+	Silent	SNP	C	C	T			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	5	153143997	153143997	C	T	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	+1	known	silent	c.1857	p.S619	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	73	0	0.00	41	16	28.07	-	-	-
GRIA1	0	genome.wustl.edu	37	5	153175111	153175111	+	Silent	SNP	C	C	T			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	5	153175111	153175111	C	T	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	+1	known	silent	c.2376	p.Y792	1.000	pfam_Iontro_glu_rcpt,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	111	0	0.00	71	23	24.47	-	-	-
HOXC4	0	genome.wustl.edu	37	12	54448950	54448950	+	Silent	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	12	54448950	54448950	G	A	SNP	HOXC4	ENST00000303406	human	ensembl	69_37n	+1	known	silent	c.756	p.P252	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXC4	HGNC	ENSG00000198353	10	0	0.00	4	6	60.00	-	-	-
ICAM4	0	genome.wustl.edu	37	19	10398280	10398280	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	19	10398280	10398280	G	A	SNP	ICAM4	ENST00000380770	human	ensembl	69_37n	+1	known	missense	c.463	p.V155M	0.886	prints_ICAM_VCAM_N	pfam_ICAM_N,prints_ICAM_VCAM_N	-	no_errors	ICAM4	HGNC	ENSG00000105371	44	0	0.00	16	16	50.00	-	-	-
KIAA1109	0	genome.wustl.edu	37	4	123227196	123227197	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	4	123227196	123227197	-	A	INS	KIAA1109	ENST00000264501	human	ensembl	69_37n	+1	known	frame_shift_ins	c.9837_9838	p.R3279fs	0.992:1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	73	0	0.00	43	26	37.68	-	-	-
LDLRAD1	0	genome.wustl.edu	37	1	54479914	54479914	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	54479914	54479914	G	A	SNP	LDLRAD1	ENST00000371360	human	ensembl	69_37n	-1	known	missense	c.197	p.T66I	0.002	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD1	HGNC	ENSG00000203985	21	0	0.00	31	13	29.55	-	-	-
LOXL4	0	genome.wustl.edu	37	10	100013398	100013398	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	10	100013398	100013398	G	T	SNP	LOXL4	ENST00000260702	human	ensembl	69_37n	-1	known	missense	c.1747	p.R583S	1.000	pfam_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Lysyl_oxidase,prints_Srcr_rcpt	-	no_errors	LOXL4	HGNC	ENSG00000138131	67	0	0.00	55	26	32.10	-	-	-
MCOLN2	0	genome.wustl.edu	37	1	85397158	85397158	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	85397158	85397158	T	G	SNP	MCOLN2	ENST00000370608	human	ensembl	69_37n	-1	known	missense	c.1429	p.I477L	0.001	pfam_PKD1_2_channel	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898	33	0	0.00	18	16	47.06	-	-	-
NUP155	0	genome.wustl.edu	37	5	37310654	37310654	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	5	37310654	37310654	C	G	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	missense	c.2628	p.K876N	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	36	0	0.00	45	19	29.69	-	-	-
OR2L3	0	genome.wustl.edu	37	1	248224884	248224884	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	248224884	248224884	A	G	SNP	OR2L3	ENST00000359959	human	ensembl	69_37n	+1	known	missense	c.901	p.T301A	0.052	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128	46	0	0.00	29	24	45.28	-	-	-
PARP14	0	genome.wustl.edu	37	3	122419979	122419979	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	3	122419979	122419979	C	G	SNP	PARP14	ENST00000474629	human	ensembl	69_37n	+1	known	missense	c.2578	p.L860V	0.000	pfam_A1pp,smart_A1pp,pfscan_A1pp	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_A1pp,pfscan_A1pp,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	20	0	0.00	12	10	45.45	-	-	-
PHACTR3	0	genome.wustl.edu	37	20	58381222	58381222	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	20	58381222	58381222	G	C	SNP	PHACTR3	ENST00000371015	human	ensembl	69_37n	+1	known	missense	c.1301	p.R434P	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	37	0	0.00	25	4	13.79	-	-	-
PTPN3	0	genome.wustl.edu	37	9	112151535	112151535	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	112151535	112151535	G	A	SNP	PTPN3	ENST00000374541	human	ensembl	69_37n	-1	known	missense	c.2231	p.T744M	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN3	HGNC	ENSG00000070159	39	0	0.00	24	24	50.00	-	-	-
RAB37	0	genome.wustl.edu	37	17	72739280	72739280	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	72739280	72739280	G	A	SNP	RAB37	ENST00000392614	human	ensembl	69_37n	+1	known	missense	c.274	p.A92T	0.999	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB37	HGNC	ENSG00000172794	66	0	0.00	35	13	27.08	-	-	-
RAD21L1	0	genome.wustl.edu	37	20	1209137	1209137	+	Silent	SNP	T	T	C			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	20	1209137	1209137	T	C	SNP	RAD21L1	ENST00000409241	human	ensembl	69_37n	+1	known	silent	c.40	p.L14	0.998	pfam_Rad21_Rec8_N	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu	-	no_errors	RAD21L1	HGNC	ENSG00000244588	39	0	0.00	16	17	51.52	-	-	-
RMI1	0	genome.wustl.edu	37	9	86617623	86617623	+	Silent	SNP	C	C	T			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	86617623	86617623	C	T	SNP	RMI1	ENST00000325875	human	ensembl	69_37n	+1	known	silent	c.1722	p.F574	0.982	NULL	pfam_DUF1767	-	no_errors	RMI1	HGNC	ENSG00000178966	82	0	0.00	88	22	20.00	-	-	-
RYR3	0	genome.wustl.edu	37	15	33961576	33961576	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	15	33961576	33961576	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	+1	known	nonsense	c.5641	p.Q1881*	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	61	0	0.00	36	32	47.06	-	-	-
SGCA	0	genome.wustl.edu	37	17	48248012	48248012	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	48248012	48248012	A	G	SNP	SGCA	ENST00000262018	human	ensembl	69_37n	+1	known	missense	c.968	p.D323G	1.000	pfam_Sarcoglycan_2	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCA	HGNC	ENSG00000108823	35	0	0.00	20	17	45.95	-	-	-
SHPRH	0	genome.wustl.edu	37	6	146240555	146240555	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	6	146240555	146240555	G	A	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	nonsense	c.4093	p.R1365*	1.000	NULL	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	57	0	0.00	48	38	44.19	-	-	-
SMARCA1	0	genome.wustl.edu	37	X	128657222	128657222	+	Silent	SNP	C	C	T			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	X	128657222	128657222	C	T	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	silent	c.126	p.A42	0.999	NULL	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	61	0	0.00	87	51	36.96	-	-	-
SRPRB	0	genome.wustl.edu	37	3	133524816	133524816	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	3	133524816	133524816	G	A	SNP	SRPRB	ENST00000466490	human	ensembl	69_37n	+1	known	missense	c.124	p.V42M	0.838	NULL	pfam_SRP_receptor_beta_su,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA	-	no_errors	SRPRB	HGNC	ENSG00000144867	38	0	0.00	33	18	35.29	-	-	-
SSFA2	0	genome.wustl.edu	37	2	182765477	182765477	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	2	182765477	182765477	T	G	SNP	SSFA2	ENST00000431877	human	ensembl	69_37n	+1	known	missense	c.558	p.N186K	1.000	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434	86	0	0.00	47	60	56.07	-	-	-
SVEP1	0	genome.wustl.edu	37	9	113219551	113219551	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	113219551	113219551	G	A	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.3658	p.P1220S	0.705	pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	74	0	0.00	51	16	23.88	-	-	-
TBC1D26	0	genome.wustl.edu	37	17	15640806	15640806	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	15640806	15640806	A	C	SNP	TBC1D26	ENST00000437605	human	ensembl	69_37n	+1	known	missense	c.167	p.E56A	0.285	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D26	HGNC	ENSG00000214946	47	0	0.00	27	10	27.03	-	-	-
TBP	0	genome.wustl.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	6	170871004	170871004	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	silent	c.180	p.Q60	0.991	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	17	0	0.00	40	8	16.67	-	-	-
TBP	0	genome.wustl.edu	37	6	170871052	170871052	+	Silent	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	6	170871052	170871052	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	silent	c.228	p.Q76	0.994	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	15	0	0.00	35	31	46.97	-	-	-
TCP10	0	genome.wustl.edu	37	6	167787875	167787876	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	6	167787875	167787876	CT	-	DEL	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	frame_shift_del	c.753_752	p.E251fs	0.000:0.000	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	122	0	0.00	40	61	59.22	-	-	-
TRPM6	0	genome.wustl.edu	37	9	77354721	77354721	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	77354721	77354721	A	G	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.5417	p.I1806T	1.000	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	42	0	0.00	23	29	55.77	-	-	-
TTC25	0	genome.wustl.edu	37	17	40091966	40091966	+	RNA	SNP	C	C	T			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	40091966	40091966	C	T	SNP	TTC25	ENST00000377540	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TTC25	HGNC	ENSG00000204815	82	0	0.00	37	22	37.29	-	-	-
UBE2W	0	genome.wustl.edu	37	8	74717957	74717957	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	8	74717957	74717957	C	T	SNP	UBE2W	ENST00000419880	human	ensembl	69_37n	-1	known	missense	c.404	p.R135Q	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2W	HGNC	ENSG00000104343	105	0	0.00	121	101	45.50	-	-	-
USP9X	0	genome.wustl.edu	37	X	40990740	40990741	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	X	40990740	40990741	AG	-	DEL	USP9X	ENST00000324545	human	ensembl	69_37n	+1	known	frame_shift_del	c.273_274	p.E93fs	1.000:1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	139	0	0.00	68	74	50.68	-	-	-
UST	0	genome.wustl.edu	37	6	149275038	149275038	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	6	149275038	149275038	G	A	SNP	UST	ENST00000367463	human	ensembl	69_37n	+1	known	missense	c.478	p.E160K	0.999	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase	-	no_errors	UST	HGNC	ENSG00000111962	88	0	0.00	93	19	16.96	-	-	-
ZFC3H1	0	genome.wustl.edu	37	12	72037937	72037937	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	12	72037937	72037937	G	T	SNP	ZFC3H1	ENST00000378743	human	ensembl	69_37n	-1	known	missense	c.1441	p.Q481K	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	210	0	0.00	139	101	42.08	-	-	-
