Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BRCA2	0	genome.wustl.edu	37	13	32954172	32954172	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	13	32954172	32954172	A	C	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	+1	known	missense	c.9146	p.Y3049S	0.998	superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	69	0	0.00	61	19	23.75	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16950687	16950687	+	RNA	SNP	G	G	T			TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	1	16950687	16950687	G	T	SNP	CROCCP2	ENST00000421700	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	9	0	0.00	11	4	26.67	-	-	-
KLK5	0	genome.wustl.edu	37	19	51452257	51452257	+	Silent	SNP	G	G	A			TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	19	51452257	51452257	G	A	SNP	KLK5	ENST00000336334	human	ensembl	69_37n	-1	known	silent	c.450	p.H150	0.980	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK5	HGNC	ENSG00000167754	38	0	0.00	53	6	10.17	-	-	-
KRTAP4-9	0	genome.wustl.edu	37	17	39261693	39261693	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	17	39261693	39261693	A	T	SNP	KRTAP4-9	ENST00000391415	human	ensembl	69_37n	+1	known	missense	c.53	p.D18V	0.587	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-9	HGNC	ENSG00000212722	24	0	0.00	22	7	23.33	-	-	-
PER3	0	genome.wustl.edu	37	1	7890053	7890053	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	1	7890053	7890053	G	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	+1	known	missense	c.3019	p.A1007T	0.080	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	16	0	0.00	21	8	26.67	-	-	-
PER3	0	genome.wustl.edu	37	1	7890055	7890055	+	Silent	SNP	T	T	A			TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	1	7890055	7890055	T	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	+1	known	silent	c.3021	p.A1007	0.063	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	18	0	0.00	25	7	21.88	-	-	-
SDHAP2	0	genome.wustl.edu	37	3	195400728	195400728	+	RNA	SNP	A	A	G			TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	3	195400728	195400728	A	G	SNP	SDHAP2	ENST00000429897	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	SDHAP2	HGNC	ENSG00000215837	22	0	0.00	21	5	19.23	-	-	-
SHROOM4	0	genome.wustl.edu	37	X	50350782	50350782	+	Silent	SNP	C	C	T			TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	X	50350782	50350782	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	silent	c.3360	p.Q1120	0.943	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	21	0	0.00	18	11	37.93	-	-	-
