Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANKRD36B	0	genome.wustl.edu	37	2	98165911	98165911	+	RNA	SNP	T	T	C			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	2	98165911	98165911	T	C	SNP	ANKRD36B	ENST00000443455	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912	113	1	0.88	73	11	13.10	-	-	-
BAIAP2-AS1	0	genome.wustl.edu	37	17	79006850	79006850	+	RNA	SNP	T	T	C			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	17	79006850	79006850	T	C	SNP	BAIAP2-AS1	ENST00000573167	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.035	-	-	-	no_errors	BAIAP2-AS1	HGNC	ENSG00000226137	44	0	0.00	32	4	11.11	-	-	-
C16orf96	0	genome.wustl.edu	37	16	4626109	4626109	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	16	4626109	4626109	T	C	SNP	C16orf96	ENST00000444310	human	ensembl	69_37n	+1	known	missense	c.1628	p.V543A	0.002	NULL	NULL	-	no_errors	C16orf96	HGNC	ENSG00000205832	23	0	0.00	23	8	25.81	-	-	-
C9orf141	0	genome.wustl.edu	37	9	139863841	139863841	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	9	139863841	139863841	C	T	SNP	C9orf141	ENST00000371629	human	ensembl	69_37n	+1	known	missense	c.22	p.L8F	0.000	NULL	superfamily_Calycin-like	-	no_errors	C9orf141	HGNC	ENSG00000198454	44	0	0.00	39	6	13.33	-	-	-
CDH1	0	genome.wustl.edu	37	16	68862155	68862155	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	16	68862155	68862155	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_del	c.2243	p.R749fs	0.997	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	75	0	0.00	41	11	20.75	-	-	-
CXorf22	0	genome.wustl.edu	37	X	35989851	35989851	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	X	35989851	35989851	G	T	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	+1	known	missense	c.2119	p.G707C	0.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	36	0	0.00	23	11	32.35	-	-	-
DMBT1	0	genome.wustl.edu	37	10	124339284	124339284	+	Silent	SNP	C	C	T			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	10	124339284	124339284	C	T	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	+1	known	silent	c.870	p.G290	0.019	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	136	0	0.00	91	20	18.02	-	-	-
DNPEP	0	genome.wustl.edu	37	2	220250745	220250745	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	2	220250745	220250745	T	A	SNP	DNPEP	ENST00000273075	human	ensembl	69_37n	-1	known	missense	c.535	p.I179F	1.000	pfam_Peptidase_M18,prints_Peptidase_M18	pfam_Peptidase_M18,pfam_Peptidase_M42,prints_Peptidase_M18	-	no_errors	DNPEP	HGNC	ENSG00000123992	80	0	0.00	45	12	21.05	-	-	-
EPG5	0	genome.wustl.edu	37	18	43532523	43532523	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	18	43532523	43532523	C	A	SNP	EPG5	ENST00000282041	human	ensembl	69_37n	-1	known	missense	c.1095	p.K365N	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223	25	0	0.00	24	7	21.88	-	-	-
EPHX1	0	genome.wustl.edu	37	1	226026576	226026578	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	1	226026576	226026578	AAG	-	DEL	EPHX1	ENST00000272167	human	ensembl	69_37n	+1	known	in_frame_del	c.586_588	p.K197in_frame_del	1.000:1.000:1.000	pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase	pfam_Epoxide_hydro_N,pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase,prints_Epox_hydrolase-like	-	no_errors	EPHX1	HGNC	ENSG00000143819	47	0	0.00	37	21	35.00	-	-	-
FAM108A1	0	genome.wustl.edu	37	19	1881527	1881527	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	19	1881527	1881527	G	-	DEL	FAM108A1	ENST00000250974	human	ensembl	69_37n	-1	known	frame_shift_del	c.39	p.C14fs	1.000	NULL	pfam_Dienelactn_hydro	-	no_errors	FAM108A1	HGNC	ENSG00000129968	9	0	0.00	4	3	42.86	-	-	-
FAM108A1	0	genome.wustl.edu	37	19	1881529	1881530	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	19	1881529	1881530	AG	-	DEL	FAM108A1	ENST00000250974	human	ensembl	69_37n	-1	known	frame_shift_del	c.37_36	p.F13fs	1.000:0.997	NULL	pfam_Dienelactn_hydro	-	no_errors	FAM108A1	HGNC	ENSG00000129968	10	0	0.00	4	3	42.86	-	-	-
GALNT2	0	genome.wustl.edu	37	1	230417408	230417408	+	RNA	SNP	T	T	C			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	1	230417408	230417408	T	C	SNP	GALNT2	ENST00000485438	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GALNT2	HGNC	ENSG00000143641	39	0	0.00	47	6	11.32	-	-	-
GCC1	0	genome.wustl.edu	37	7	127224987	127224987	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	7	127224987	127224987	C	A	SNP	GCC1	ENST00000321407	human	ensembl	69_37n	-1	known	missense	c.250	p.D84Y	1.000	NULL	pfam_GRIP,superfamily_ARM-type_fold,smart_GRIP,pfscan_GRIP	-	no_errors	GCC1	HGNC	ENSG00000179562	40	0	0.00	27	12	30.77	-	-	-
GPC2	0	genome.wustl.edu	37	7	99767587	99767587	+	RNA	SNP	A	A	G			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	7	99767587	99767587	A	G	SNP	GPC2	ENST00000471050	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPC2	HGNC	ENSG00000213420	32	0	0.00	43	7	14.00	-	-	-
GPRIN1	0	genome.wustl.edu	37	5	176025940	176025940	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	5	176025940	176025940	G	T	SNP	GPRIN1	ENST00000303991	human	ensembl	69_37n	-1	known	missense	c.896	p.P299H	0.018	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258	53	0	0.00	27	9	25.00	-	-	-
INPP5J	0	genome.wustl.edu	37	22	31521404	31521404	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	22	31521404	31521404	G	A	SNP	INPP5J	ENST00000331075	human	ensembl	69_37n	+1	known	missense	c.679	p.A227T	0.011	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5J	HGNC	ENSG00000185133	25	0	0.00	26	4	13.33	-	-	-
KATNAL2	0	genome.wustl.edu	37	18	44610718	44610718	+	Silent	SNP	T	T	C			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	18	44610718	44610718	T	C	SNP	KATNAL2	ENST00000592005	human	ensembl	69_37n	+1	putative	silent	c.270	p.F90	0.000	NULL	pfam_ATPase_AAA_core	-	no_errors	KATNAL2	HGNC	ENSG00000167216	35	0	0.00	35	4	10.26	-	-	-
LINC00588	0	genome.wustl.edu	37	8	58192284	58192284	+	RNA	SNP	T	T	C			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	8	58192284	58192284	T	C	SNP	LINC00588	ENST00000521663	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	LINC00588	HGNC	ENSG00000215117	35	0	0.00	35	4	10.26	-	-	-
MATN1-AS1	0	genome.wustl.edu	37	1	31192650	31192650	+	RNA	SNP	T	T	G			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	1	31192650	31192650	T	G	SNP	MATN1-AS1	ENST00000414532	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MATN1-AS1	HGNC	ENSG00000186056	54	0	0.00	38	5	11.63	-	-	-
MED23	0	genome.wustl.edu	37	6	131925356	131925356	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	6	131925356	131925356	T	C	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	missense	c.1736	p.Y579C	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	28	0	0.00	16	6	27.27	-	-	-
MLL3	0	genome.wustl.edu	37	7	151848016	151848019	+	Frame_Shift_Del	DEL	GATG	GATG	-			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	GATG	GATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	7	151848016	151848019	GATG	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.12914_12911	p.S4304fs	1.000:0.999:0.998:1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	32	0	0.00	34	8	19.05	-	-	-
MUC19	0	genome.wustl.edu	37	12	40918902	40918902	+	RNA	SNP	T	T	C			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	12	40918902	40918902	T	C	SNP	MUC19	ENST00000474954	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MUC19	HGNC	ENSG00000205592	30	0	0.00	21	4	16.00	-	-	-
MUC19	0	genome.wustl.edu	37	12	40954386	40954386	+	Silent	SNP	C	C	T			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	12	40954386	40954386	C	T	SNP	MUC19	ENST00000380816	human	ensembl	69_37n	+1	novel	silent	c.1242	p.Y414	0.336	NULL	pfam_Cys_knot,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MUC19	HGNC	ENSG00000205592	24	0	0.00	17	3	15.00	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1280246	1280246	+	Silent	SNP	G	G	A			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	11	1280246	1280246	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	silent	c.16677	p.T5559	0.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	35	0	0.00	26	14	35.00	-	-	-
NLRP9	0	genome.wustl.edu	37	19	56226512	56226512	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	19	56226512	56226512	G	T	SNP	NLRP9	ENST00000332836	human	ensembl	69_37n	-1	known	missense	c.2410	p.L804I	0.011	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	16	0	0.00	16	6	27.27	-	-	-
NOL6	0	genome.wustl.edu	37	9	33468140	33468140	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	9	33468140	33468140	G	A	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	nonsense	c.1312	p.Q438*	0.999	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	56	0	0.00	31	4	11.43	-	-	-
PCDHB12	0	genome.wustl.edu	37	5	140589906	140589906	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	5	140589906	140589906	C	A	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	+1	known	missense	c.1427	p.T476K	0.018	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	88	0	0.00	65	25	27.78	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	12	0	0.00	12	4	25.00	-	-	-
PTPRE	0	genome.wustl.edu	37	10	129883933	129883933	+	RNA	SNP	C	C	T			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	10	129883933	129883933	C	T	SNP	PTPRE	ENST00000479896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTPRE	HGNC	ENSG00000132334	52	0	0.00	33	5	13.16	-	-	-
RABEPK	0	genome.wustl.edu	37	9	127996096	127996096	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	9	127996096	127996096	T	C	SNP	RABEPK	ENST00000373538	human	ensembl	69_37n	+1	known	missense	c.956	p.L319P	0.000	NULL	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	RABEPK	HGNC	ENSG00000136933	41	0	0.00	32	18	36.00	-	-	-
RECQL5	0	genome.wustl.edu	37	17	73657112	73657112	+	Silent	SNP	G	G	A			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	17	73657112	73657112	G	A	SNP	RECQL5	ENST00000317905	human	ensembl	69_37n	-1	known	silent	c.909	p.N303	0.976	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469	29	0	0.00	23	4	14.81	-	-	-
RNH1	0	genome.wustl.edu	37	11	499583	499583	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	11	499583	499583	G	A	SNP	RNH1	ENST00000531149	human	ensembl	69_37n	-1	putative	missense	c.461	p.T154I	0.001	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_stop_codon	RNH1	HGNC	ENSG00000023191	9	0	0.00	13	6	31.58	-	-	-
SRL	0	genome.wustl.edu	37	16	4257777	4257777	+	Silent	SNP	G	G	A			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	16	4257777	4257777	G	A	SNP	SRL	ENST00000572111	human	ensembl	69_37n	-1	known	silent	c.390	p.S130	0.000	NULL	NULL	-	no_errors	SRL	HGNC	ENSG00000185739	97	0	0.00	89	11	10.89	-	-	-
TBX3	0	genome.wustl.edu	37	12	115115441	115115443	+	In_Frame_Del	DEL	GTC	GTC	-			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	GTC	GTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	12	115115441	115115443	GTC	-	DEL	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	in_frame_del	c.885_883	p.D295in_frame_del	1.000:1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	42	0	0.00	31	5	13.89	-	-	-
TNFSF12-TNFSF13	0	genome.wustl.edu	37	17	7463369	7463369	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	17	7463369	7463369	A	T	SNP	TNFSF12-TNFSF13	ENST00000293826	human	ensembl	69_37n	+1	known	missense	c.629	p.D210V	1.000	superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	-	no_errors	TNFSF12-TNFSF13	HGNC	ENSG00000248871	29	0	0.00	21	4	16.00	-	-	-
TRAPPC3	0	genome.wustl.edu	37	1	36603290	36603290	+	RNA	SNP	C	C	T			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	1	36603290	36603290	C	T	SNP	TRAPPC3	ENST00000462715	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRAPPC3	HGNC	ENSG00000054116	55	0	0.00	32	6	15.79	-	-	-
TRIM49C	0	genome.wustl.edu	37	11	89774236	89774236	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	11	89774236	89774236	C	G	SNP	TRIM49C	ENST00000448984	human	ensembl	69_37n	+1	known	missense	c.877	p.H293D	0.024	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM49C	HGNC	ENSG00000204449	33	0	0.00	35	5	12.50	-	-	-
TUBA3FP	0	genome.wustl.edu	37	22	21363744	21363744	+	Splice_Site	SNP	T	T	C			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	22	21363744	21363744	T	C	SNP	TUBA3FP	ENST00000292748	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	TUBA3FP	HGNC	ENSG00000161149	34	0	0.00	31	4	11.43	-	-	-
TXNRD1	0	genome.wustl.edu	37	12	104703836	104703836	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	12	104703836	104703836	A	G	SNP	TXNRD1	ENST00000427956	human	ensembl	69_37n	+1	known	missense	c.268	p.T90A	0.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431	40	0	0.00	26	5	16.13	-	-	-
ZNF467	0	genome.wustl.edu	37	7	149461958	149461960	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	7	149461958	149461960	AGG	-	DEL	ZNF467	ENST00000302017	human	ensembl	69_37n	-1	known	in_frame_del	c.1633_1631	p.S544in_frame_del	0.991:0.317:0.255	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444	62	0	0.00	24	12	33.33	-	-	-
